Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ABR 29 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 909373 909374 + Frame_Shift_Ins INS - - G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ABR NM_021962 exon23 c.2527_2528insC p.I843fs AGGAAATGGGGGG . 139.0 47.0 102.0 0.0 . 91 ADAMTS1 9510 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 28210546 28210546 + Silent SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ADAMTS1 NM_006988 exon9 c.A2256G p.E752E TTTCACTTCGATG . 83.0 35.0 69.0 0.0 . 272 ADCY2 108 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 7706898 7706910 + Frame_Shift_Del DEL TGGGCGTGCATTC TGGGCGTGCATTC - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 TGGGCGTGCATTC TGGGCGTGCATTC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ADCY2 NM_020546 exon8 c.1151_1163del p.384_388del TGCGCGTGGGCGT . 264.0 59.0 228.0 0.0 . 97 ADNP 23394 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 49508566 49508566 + Silent SNP A A C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ADNP NM_015339 exon5 c.T2685G p.P895P AAAAACAGGGTCA . 161.0 84.0 112.0 0.0 . 92 AGAP1 116987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 237032725 237032725 + Missense_Mutation SNP A A G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . AGAP1 NM_001037131 exon18 c.A2533G p.N845D AACAATAACCGGA . 382.0 174.0 293.0 0.0 . 93 AGAP2 116986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 58125709 58125709 + Silent SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . AGAP2 NM_001122772 exon8 c.C1836T p.L612L GGACGGGAGGGAA . 109.0 50.0 81.0 0.0 . 716 AGPAT9 84803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 84457903 84457903 + Missense_Mutation SNP T T A rs150911365 alternate_allele TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . AGPAT9 NM_001256421 exon2 c.T128A p.V43E TCCTAGTGAAAAC . 36.0 28.0 47.0 0.0 T|1.000;C|0.000 91 APC2 10297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 1456316 1456316 + Silent SNP G G A rs138830892 alternate_allele TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . APC2 NM_005883 exon8 c.G729A p.A243A GCTGGCGGTGAAG . 201.0 68.0 159.0 0.0 G|1.000;C|0.000 290 BAG4 9530 ucsc.edu;bcgsc.ca 37 8 38050279 38050279 + Missense_Mutation SNP G G T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . BAG4 NM_004874 exon2 c.G344T p.S115I ACCCAAGTACATA . 43.0 4.0 67.0 0.0 . 228 BBS2 583 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 56548459 56548459 + Missense_Mutation SNP T T A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . BBS2 NM_031885 exon2 c.A251T p.N84I TCAGGGTTCAATA . 140.0 109.0 256.0 0.0 . 91 BCL2L1 598 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 30309743 30309743 + Silent SNP T T A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . BCL2L1 NM_138578 exon2 c.A279T p.A93A GTCGCCTGCCTCC . 279.0 83.0 141.0 0.0 . 1084 BCLAF1 9774 hgsc.bcm.edu;broad.mit.edu 37 6 136589436 136589436 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . BCLAF1 NM_014739 exon10 c.C2261T p.S754F GCTGAAGAGGATG . 94.0 11.0 106.0 0.0 . 228 BRD4 23476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 15349580 15349580 + Nonsense_Mutation SNP C C A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . BRD4 NM_058243 exon19 c.G3994T p.E1332X CCTGCTCCCGCTT . 135.0 66.0 62.0 0.0 . 767 CACNA1E 777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 181479711 181479711 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . CACNA1E NM_001205293 exon2 c.G365A p.R122Q TGTCCCGAAGACT . 418.0 69.0 167.0 0.0 . 95 CDH19 28513 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 64239420 64239420 + Missense_Mutation SNP G G C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . CDH19 NM_021153 exon2 c.C22G p.R8G TAAAACGCAGCAG . 142.0 76.0 103.0 0.0 . 516 CERS5 91012 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 50529577 50529577 + Silent SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . . NM_147190 exon8 c.C810T p.D270D AAGGGTGTCACAG . 117.0 46.0 107.0 0.0 . . CHERP 10523 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 16636060 16636060 + Missense_Mutation SNP G G C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . CHERP NM_006387 exon10 c.C1734G p.F578L GGCAGGGAAGTCC . 187.0 67.0 98.0 0.0 . 92 CIZ1 25792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 130941315 130941315 + Missense_Mutation SNP C C T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . CIZ1 NM_001257975 exon8 c.G1261A p.V421M GCTGCACCTGCCT . 174.0 81.0 110.0 0.0 . 92 CXXC5 51523 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 139060853 139060853 + Missense_Mutation SNP C C G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . CXXC5 NM_016463 exon2 c.C745G p.L249V GGAGAGCTGGCCT . 115.0 8.0 99.0 0.0 . 90 DDX41 51428 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 176940709 176940709 + Missense_Mutation SNP G G T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . DDX41 NM_016222 exon10 c.C1075A p.R359S TGGTACGGATGTC . 212.0 105.0 183.0 0.0 . 226 DMD 1756 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 31747756 31747756 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . DMD NM_004006 exon52 c.C7652T p.T2551M CGATCCGTAATGA . 202.0 69.0 207.0 1.0 . 265 DNAH7 56171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 196891544 196891544 + Missense_Mutation SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . DNAH7 NM_018897 exon7 c.A607G p.I203V TAACTATGCTGTC . 129.0 67.0 108.0 0.0 . 102 DOCK8 81704 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 429834 429834 + Missense_Mutation SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . DOCK8 NM_203447 exon36 c.T4606C p.F1536L ATGAGGTTCAGTT . 139.0 45.0 118.0 1.0 . 517 EDNRB 1910 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 78474006 78474006 + Silent SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . EDNRB NM_001201397 exon7 c.A1452G p.K484K GCAGTTTTTGAAT . 20.0 16.0 34.0 0.0 . 522 ERRFI1 54206 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 8074333 8074340 + Frame_Shift_Del DEL TCCTCTTC TCCTCTTC - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 TCCTCTTC TCCTCTTC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ERRFI1 NM_018948 exon4 c.319_326del p.107_109del ACTTGATCCTCTT . 30.0 15.0 124.0 0.0 . 91 ERRFI1 54206 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 8074342 8074343 + Frame_Shift_Del DEL TG TG - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 TG TG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ERRFI1 NM_018948 exon4 c.316_317del p.106_106del TCTTCATGTGGTC . 26.0 15.0 119.0 0.0 . 91 FGF20 26281 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 16850701 16850701 + Silent SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . FGF20 NM_019851 exon3 c.C516T p.D172D AGTTCCGTCTTTG . 151.0 51.0 114.0 0.0 . 522 FHOD3 80206 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 34340646 34340647 + Frame_Shift_Ins INS - - GT novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . FHOD3 NM_025135 exon23 c.3976_3977insGT p.E1326fs GCGGCTGAGCACG . 156.0 88.0 85.0 0.0 . 139 GAS2 2620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 22777439 22777439 + Missense_Mutation SNP C C G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . GAS2 NM_177553 exon7 c.C663G p.F221L CAAGTTCTGTGTG . 137.0 38.0 95.0 0.0 . 652 GPR52 9293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 174417683 174417683 + Missense_Mutation SNP A A T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . GPR52 NM_005684 exon1 c.A434T p.K145M TAACCAAGCCTCT . 410.0 157.0 135.0 0.0 . 91 HMCN1 83872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 186086707 186086707 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . HMCN1 NM_031935 exon77 c.G11800A p.G3934S AAAAATGGTATAA . 307.0 101.0 104.0 0.0 . 113 HNRNPCL1 343069 ucsc.edu;bcgsc.ca 37 1 12907358 12907358 + Missense_Mutation SNP T T C rs74587302 TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . HNRNPCL1 NM_001013631 exon2 c.A785G p.Q262R TCCCCCTGATCTT . 70.0 10.0 93.0 1.0 . 68 IFNAR1 3454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 34721747 34721747 + Silent SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . IFNAR1 NM_000629 exon8 c.T1041C p.H347H ATTCCATATCTAT . 101.0 45.0 106.0 0.0 . 91 INSRR 3645 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 156828374 156828381 + Frame_Shift_Del DEL GCAGGCAT GCAGGCAT - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 GCAGGCAT GCAGGCAT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . INSRR NM_014215 exon1 c.33_40del p.11_14del TCACAGGCAGGCA . 354.0 28.0 135.0 0.0 . 1403 ITGAL 3683 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 30525112 30525112 + Missense_Mutation SNP A A G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ITGAL NM_002209 exon25 c.A2807G p.Y936C CACTCTATGTCAG . 123.0 68.0 117.0 2.0 . 994 ITGAM 3684 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 31282347 31282347 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ITGAM NM_000632 exon6 c.G500A p.R167Q ACTTTCGGCGGAT . 203.0 63.0 151.0 0.0 . 226 JHDM1D 80853 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 139876582 139876582 + Missense_Mutation SNP C C G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . JHDM1D NM_030647 exon1 c.G156C p.M52I CTCGATCATGAAG . 75.0 29.0 49.0 0.0 . 91 KIAA0146 23514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 48309166 48309166 + Silent SNP A A T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . KIAA0146 NM_001080394 exon6 c.A756T p.S252S AAATTCAGCAAAG . 92.0 38.0 100.0 0.0 . 68 MAGEE1 57692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 75649900 75649900 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . MAGEE1 NM_020932 exon1 c.G1577A p.R526H AATATCGCAACCA . 105.0 30.0 118.0 0.0 . 262 MARCH6 10299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 10391780 10391780 + Missense_Mutation SNP G G C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . MARCH6 NM_005885 exon7 c.G703C p.D235H GAGGAGGACAATG . 246.0 55.0 168.0 0.0 . 501 MLXIPL 51085 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 73020062 73020062 + Missense_Mutation SNP A A C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . MLXIPL NM_032954 exon7 c.T857G p.L286R GGCGTCAGGTCCG . 175.0 84.0 134.0 1.0 . 91 MYH8 4626 ucsc.edu;bcgsc.ca 37 17 10315757 10315757 + Missense_Mutation SNP T T A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . MYH8 NM_002472 exon14 c.A1346T p.Q449L TCCAGCTGCTGGT . 457.0 184.0 395.0 2.0 . 101 MYOM2 9172 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 2054129 2054129 + Silent SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . MYOM2 NM_003970 exon22 c.T2832C p.C944C CTGGTGTAAATCC . 172.0 105.0 128.0 0.0 . 95 NAV2 89797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 20083871 20083871 + Missense_Mutation SNP C C T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . NAV2 NM_001244963 exon22 c.C5018T p.S1673F CACTCTCCTTGGT . 41.0 22.0 22.0 0.0 . 96 NPAS2 4862 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 101580582 101580590 + In_Frame_Del DEL GGAAAGGAG GGAAAGGAG - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 GGAAAGGAG GGAAAGGAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . NPAS2 NM_002518 exon8 c.661_669del p.221_223del CCACTAGGAAAGG . 94.0 24.0 88.0 0.0 . 94 OR10C1 442194 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 29408254 29408254 + Frame_Shift_Del DEL G G - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . OR10C1 NM_013941 exon1 c.462delG p.V154fs GCTGGTGGGGCTG . 172.0 52.0 98.0 0.0 . 22 PGLYRP3 114771 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 153277442 153277442 + Silent SNP G G T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . PGLYRP3 NM_052891 exon3 c.C357A p.A119A AAAGAAGGCGATG . 590.0 113.0 198.0 0.0 . 94 PKD1L1 168507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 47876604 47876604 + Missense_Mutation SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . PKD1L1 NM_138295 exon37 c.A5858G p.H1953R GGCGTGTGCAGGT . 373.0 84.0 291.0 0.0 . 145 POM121L12 285877 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 53103948 53103948 + Missense_Mutation SNP C C G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . . NM_182595 exon1 c.C584G p.P195R ACGGGCCGTTGTG . 71.0 33.0 43.0 0.0 . . PVRL4 81607 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 161044015 161044015 + Silent SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . PVRL4 NM_030916 exon6 c.C1149T p.T383T TTTCTGGGTCATC . 620.0 126.0 204.0 0.0 . 92 RECQL4 9401 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 8 145741755 145741755 + Missense_Mutation SNP C C G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . RECQL4 NM_004260 exon5 c.G748C p.G250R GGCTCCCCACACG . 41.0 13.0 22.0 0.0 . 1083 ROBO1 6091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 79174651 79174651 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ROBO1 NM_002941 exon3 c.C127T p.P43S GGATTGGCGTCCC . 334.0 149.0 269.0 0.0 . 67 SEMA6C 10500 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 151110260 151110260 + Missense_Mutation SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . SEMA6C NM_001178061 exon10 c.A683G p.Q228R AAGGCCTGGACAA . 552.0 29.0 186.0 0.0 . 92 SPTA1 6708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158622406 158622406 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . SPTA1 NM_003126 exon23 c.C3226T p.R1076C GACGACGTCTGCG . 300.0 106.0 127.0 0.0 . 142 SPTA1 6708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158624516 158624516 + Missense_Mutation SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . SPTA1 NM_003126 exon21 c.A2921G p.E974G ACTCCCTCCACTG . 227.0 35.0 79.0 0.0 . 142 SV2C 22987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 75427868 75427868 + Missense_Mutation SNP G G T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . SV2C NM_014979 exon2 c.G293T p.S98I TCCCCAGTATGAA . 192.0 80.0 151.0 0.0 . 91 THSD7A 221981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 11633070 11633070 + Missense_Mutation SNP C C T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . THSD7A NM_015204 exon3 c.G1082A p.C361Y ACCTGGCACTCTT . 136.0 61.0 128.0 0.0 . 71 TP53BP2 7159 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 223968572 223968572 + Missense_Mutation SNP G G C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . TP53BP2 NM_001031685 exon18 c.C3388G p.Q1130E TCCTTTGTCTTGG . 83.0 6.0 61.0 0.0 . 229 TSEN34 79042 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 54696036 54696036 + Missense_Mutation SNP A A G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . TSEN34 NM_024075 exon4 c.A557G p.Q186R TTGTCCAGCTGGC . 259.0 126.0 206.0 1.0 . 90 UNC13C 440279 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 54914531 54914531 + Frame_Shift_Del DEL C C - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . UNC13C NM_001080534 exon29 c.6113delC p.S2038fs GTCGTTCCTCCAA . 110.0 43.0 92.0 0.0 . 51 WDFY3 23001 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 85724505 85724505 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . WDFY3 NM_014991 exon16 c.C2545T p.P849S CTCCAGGATGAAT . 233.0 170.0 345.0 0.0 . 93 WDR17 116966 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 177058704 177058704 + Missense_Mutation SNP G G A rs200199041 TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . WDR17 NM_170710 exon10 c.G1373A p.R458Q CTTCCCGAAATGG . 32.0 26.0 61.0 0.0 . 95 ZNF431 170959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 21366647 21366647 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ZNF431 NM_133473 exon5 c.G1541A p.C514Y ACAAATGTGAAGA . 78.0 26.0 37.0 0.0 . 514 ZNF443 10224 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 12542333 12542333 + Missense_Mutation SNP G G A rs143162114 byfrequency TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ZNF443 NM_005815 exon4 c.C653T p.T218M GTGTGCGTTCTTT . 308.0 19.0 201.0 0.0 G|0.999;A|0.001 91 ZNF461 92283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 37130125 37130125 + Silent SNP T T A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . . NM_153257 exon6 c.A1122T p.I374I CTGATGTATAGTA . 90.0 38.0 81.0 0.0 . . ZNF585A 199704 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 37642633 37642633 + Missense_Mutation SNP C C A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ZNF585A NM_199126 exon6 c.G2003T p.C668F TTCCCACACTCAG . 358.0 130.0 226.0 0.0 . 92