Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq A1BG 1 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58862780 58862780 + Missense_Mutation SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . A1BG NM_130786 exon5 c.C887T p.P296L TCGACCGGCGCGC . 96.0 27.0 68.0 0.0 . 90 AFAP1 60312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 7787959 7787959 + Missense_Mutation SNP C C T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . AFAP1 NM_001134647 exon12 c.G1492A p.A498T GAAGTGCCGTCCC . 98.0 19.0 137.0 0.0 . 90 AKAP9 10142 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 91671427 91671427 + Missense_Mutation SNP C C T rs149244653 by1000genomes TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . AKAP9 NM_005751 exon19 c.C4985T p.A1662V TGGAAGCACTAAA . 40.0 13.0 63.0 0.0 C|0.999;T|0.000 755 AMZ1 155185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 2740124 2740124 + Silent SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . AMZ1 NM_133463 exon2 c.G39A p.G13G CTTCGGGCCCCGG . 62.0 13.0 55.0 0.0 . 90 ANKFN1 162282 broad.mit.edu;bcgsc.ca 37 17 54535232 54535232 + Silent SNP T T C novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . ANKFN1 NM_153228 exon13 c.T1458C p.C486C GTCTTGTATGTGG . 53.0 4.0 88.0 0.0 . 136 ASIC1 41 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 50473752 50473752 + Silent SNP C C T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . . NM_001256830 exon6 c.C1221T p.G407G CTATGGCAAAGAG . 324.0 53.0 325.0 0.0 . . ATP9A 10079 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 50287714 50287714 + Missense_Mutation SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . ATP9A NM_006045 exon12 c.C1120T p.R374C TGGAGCGAACCAC . 100.0 7.0 123.0 0.0 . 94 BAZ2B 29994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 160242941 160242941 + Missense_Mutation SNP T T A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . BAZ2B NM_013450 exon22 c.A3394T p.M1132L CACCCATGCTGTC . 61.0 10.0 98.0 0.0 . 94 BLK 640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 11420535 11420535 + Missense_Mutation SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . BLK NM_001715 exon12 c.G1228A p.G410R CACTTCGGGGTCT . 172.0 32.0 152.0 0.0 . 946 BTBD11 121551 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 108012091 108012091 + Missense_Mutation SNP G G T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . BTBD11 NM_001018072 exon10 c.G2388T p.R796S CCTGAGGGAGGCC . 83.0 12.0 86.0 0.0 . 93 C19orf10 56005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 4664897 4664897 + Missense_Mutation SNP G G T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . C19orf10 NM_019107 exon3 c.C278A p.T93N CAGATGGTGCAGG . 94.0 13.0 143.0 0.0 . 90 C3orf67 200844 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 58849427 58849427 + Missense_Mutation SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . C3orf67 NM_198463 exon12 c.C1075T p.P359S ATCGTGGTCTTGA . 77.0 13.0 94.0 0.0 . 68 CACNA1E 777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 181767462 181767462 + Missense_Mutation SNP C C G rs189356042 by1000genomes;alternate_allele TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . CACNA1E NM_001205293 exon48 c.C6434G p.S2145C TCCCCTCTGTCTC . 36.0 9.0 33.0 0.0 C|0.999;T|0.000 95 CAMTA1 23261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 7700465 7700465 + Silent SNP C C T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . CAMTA1 NM_015215 exon7 c.C516T p.P172P GAACCCCGACATC . 130.0 27.0 137.0 0.0 . 520 CCDC129 223075 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 31683502 31683502 + Missense_Mutation SNP C C A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . . NM_001257968 exon11 c.C2596A p.Q866K GGTCACCAGGAAG . 75.0 11.0 57.0 0.0 . . CCDC15 80071 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 124861393 124861393 + Missense_Mutation SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . CCDC15 NM_025004 exon9 c.G1945A p.D649N ATGACAGATGAGA . 56.0 5.0 70.0 0.0 . 69 CD37 951 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 49841271 49841271 + Missense_Mutation SNP C C G novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . CD37 NM_001774 exon5 c.C432G p.D144E CTGGGACTATGTG . 194.0 62.0 180.0 0.0 . 90 CHRNA4 1137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 61978125 61978125 + Missense_Mutation SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . CHRNA4 NM_000744 exon6 c.C1849T p.L617F GGAAGAGGCCCAC . 130.0 23.0 130.0 0.0 . 91 CISD1 55847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 10 60037077 60037077 + Nonsense_Mutation SNP A A T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . CISD1 NM_018464 exon2 c.A232T p.K78X AGGTCCAAAAAGG . 181.0 28.0 217.0 0.0 . 90 COL4A4 1286 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 227906897 227906897 + Missense_Mutation SNP C C A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . COL4A4 NM_000092 exon37 c.G3472T p.D1158Y CTGGATCCCCCTG . 45.0 7.0 56.0 0.0 . 142 COL4A6 1288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 107681209 107681209 + Missense_Mutation SNP A A T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . COL4A6 NM_001847 exon2 c.T29A p.L10Q GTAACCAGGAGCA . 226.0 64.0 268.0 0.0 . 199 CPNE1 8904 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 34220601 34220601 + Silent SNP C C A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . CPNE1 NM_003915 exon3 c.G162T p.R54R CCGCACCCGTTCA . 125.0 10.0 186.0 0.0 . 91 DAAM1 23002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 59821978 59821978 + Missense_Mutation SNP C C G novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . DAAM1 NM_014992 exon20 c.C2482G p.Q828E AAAGGTCAAAGAG . 63.0 12.0 109.0 0.0 . 227 DGAT2 84649 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 75509440 75509440 + Silent SNP G G T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . DGAT2 NM_032564 exon7 c.G978T p.G326G CTGGGGGCTGGTG . 60.0 12.0 90.0 1.0 . 226 DHRS7 51635 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 60631900 60631900 + Missense_Mutation SNP C C T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . DHRS7 NM_016029 exon1 c.G128A p.R43H CCTGGGCGTCGTC . 220.0 27.0 219.0 0.0 . 91 DNAH17 8632 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 76482177 76482177 + Silent SNP G G T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . DNAH17 NM_173628 exon46 c.C7140A p.I2380I TTCGTTGATCCAC . 43.0 5.0 82.0 0.0 . 142 DQX1 165545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 74745708 74745708 + Silent SNP T T A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . DQX1 NM_133637 exon12 c.A2019T p.P673P GAAGTATGGAGGG . 139.0 24.0 147.0 0.0 . 92 DVL1 1855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 1277480 1277480 + Missense_Mutation SNP A A G rs147424815 TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . DVL1 NM_004421 exon4 c.T419C p.M140T CTGACCATGGACT . 150.0 27.0 153.0 0.0 A|1.000;G|0.000 658 EPHA1 2041 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 143096483 143096483 + Missense_Mutation SNP T T A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . EPHA1 NM_005232 exon5 c.A859T p.M287L TGTCCATCCGGTA . 144.0 44.0 144.0 0.0 . 1436 FAM160A1 729830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 152507926 152507926 + Missense_Mutation SNP T T C novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . . NM_001109977 exon6 c.T866C p.L289P ACTCCCTGGAGTT . 82.0 11.0 103.0 0.0 . . FAM227B 196951 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 49620847 49620850 + Frame_Shift_Del DEL TCTC TCTC - novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 TCTC TCTC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . . NM_152647 exon16 c.1442_1445del p.481_482del ACACATTCTCTCT . 67.0 10.0 75.0 0.0 . . FBLN2 2199 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 13612210 13612210 + Missense_Mutation SNP C C T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . FBLN2 NM_001998 exon2 c.C355T p.P119S CTGCCGCCCAACT . 108.0 21.0 75.0 0.0 . 91 FCRLB 127943 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 161697408 161697408 + Missense_Mutation SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . FCRLB NM_001002901 exon6 c.G1237A p.A413T CACTTTGCTGTGA . 123.0 8.0 115.0 0.0 . 22 FGR 2268 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 27941376 27941376 + Silent SNP C C A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . FGR NM_001042729 exon10 c.G1080T p.V360V CATGTCCACCAAT . 147.0 19.0 204.0 0.0 . 547 FNTA 2339 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 42911627 42911627 + Silent SNP C C T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . FNTA NM_002027 exon1 c.C138T p.A46A GGAAGCCGTGGCG . 52.0 14.0 33.0 0.0 . 91 FSIP2 401024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 186673299 186673299 + Silent SNP C C T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . FSIP2 NM_173651 exon17 c.C19533T p.V6511V GGTTGTCGATTCC . 98.0 16.0 127.0 0.0 . 90 FYN 2534 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 112035597 112035597 + Silent SNP A A G novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . FYN NM_153047 exon2 c.T297C p.D99D CAGGTCATCTTCT . 40.0 5.0 60.0 0.0 . 1000 GABBR1 2550 broad.mit.edu;bcgsc.ca 37 6 29580368 29580368 + Missense_Mutation SNP G G T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . GABBR1 NM_001470 exon13 c.C1590A p.S530R AGAGCCGCTGGCA . 60.0 6.0 46.0 0.0 . 521 GIGYF1 64599 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 100284048 100284048 + Missense_Mutation SNP G G T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . GIGYF1 NM_022574 exon8 c.C703A p.P235T AGCGGGGACCACC . 60.0 5.0 50.0 0.0 . 136 GLI2 2736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 121554929 121554929 + Missense_Mutation SNP G G T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . GLI2 NM_005270 exon1 c.G33T p.E11D CTCCGAGAAGCAA . 68.0 15.0 73.0 0.0 . 954 GLT8D2 83468 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 104388181 104388181 + Silent SNP G G C novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . GLT8D2 NM_031302 exon9 c.C699G p.A233A CATGTTGGCAACA . 130.0 18.0 132.0 0.0 . 92 GPR144 347088 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 127232800 127232800 + Silent SNP G G T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . . NM_001161808 exon17 c.G2586T p.L862L GGTCCTGCTGCCC . 205.0 34.0 120.0 1.0 . . GRAMD1B 57476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 123489506 123489506 + Missense_Mutation SNP A A T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . GRAMD1B NM_020716 exon18 c.A2007T p.E669D CCAAGAAAGGTAA . 98.0 16.0 102.0 0.0 . 69 GREB1L 80000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 19079942 19079942 + Missense_Mutation SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . . NM_001142966 exon22 c.G3644A p.G1215E GGCCGGGACAGCC . 54.0 11.0 60.0 0.0 . . GRHL1 29841 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 10095217 10095217 + Missense_Mutation SNP A A G novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . GRHL1 NM_198182 exon2 c.A194G p.Y65C TGCTCTATGACTA . 110.0 16.0 132.0 0.0 . 92 GUF1 60558 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 44682735 44682735 + Missense_Mutation SNP A A G novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . GUF1 NM_021927 exon3 c.A302G p.N101S AGAATAATAAGCA . 92.0 20.0 137.0 2.0 . 91 H1F0 3005 hgsc.bcm.edu;broad.mit.edu 37 22 38201683 38201684 + Frame_Shift_Ins INS - - T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . H1F0 NM_005318 exon1 c.132_133insT p.G44fs CGCTGGCTCCTCG . 110.0 10.0 176.0 0.0 . 90 HOXA3 3200 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 7 27148273 27148273 + Missense_Mutation SNP T T C novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . HOXA3 NM_030661 exon3 c.A593G p.Y198C CTCGTGTAGGCCG . 55.0 8.0 39.0 0.0 . 153 HOXD9 3235 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 176988265 176988265 + Missense_Mutation SNP G G C novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . HOXD9 NM_014213 exon1 c.G769C p.E257Q CTGAAGGAGGAGG . 70.0 12.0 91.0 0.0 . 90 HUWE1 10075 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 53655712 53655712 + Missense_Mutation SNP C C T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . HUWE1 NM_031407 exon14 c.G1105A p.A369T TCATGGCCTGGAT . 97.0 31.0 93.0 1.0 . 280 IPP 3652 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 46165836 46165836 + Missense_Mutation SNP C C A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . IPP NM_001145349 exon9 c.G1557T p.M519I CACTTTCATTGAG . 34.0 6.0 38.0 0.0 . 91 ITGAV 3685 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 187465066 187465066 + Missense_Mutation SNP T T C novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . ITGAV NM_001144999 exon1 c.T5C p.L2P AAATGCTCCTAGG . 49.0 7.0 71.0 0.0 . 653 ITIH4 3700 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52864633 52864633 + Missense_Mutation SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . ITIH4 NM_001166449 exon1 c.C26T p.T9I CTGCAGGTACGGA . 134.0 28.0 142.0 1.0 . 46 JAK3 3718 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17943612 17943612 + Missense_Mutation SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . JAK3 NM_000215 exon18 c.C2477T p.S826L AGCTGTGAGATGT . 198.0 35.0 263.0 0.0 . 2418 KLHL2 11275 broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 166149976 166149976 + Missense_Mutation SNP A A T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . KLHL2 NM_001161521 exon3 c.A182T p.D61V TGTGCGATGTCAC . 273.0 27.0 372.0 0.0 . 226 LAMA4 3910 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 112435307 112435307 + Missense_Mutation SNP C C G novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . LAMA4 NM_001105206 exon38 c.G5298C p.R1766S AGGCTCCCTGTGA . 54.0 8.0 55.0 0.0 . 140 LMAN2L 81562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 97405772 97405772 + Silent SNP C C T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . LMAN2L NM_030805 exon1 c.G6A p.A2A AGTCGCCGCCATC . 37.0 9.0 22.0 0.0 . 90 LRRC69 100130742 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 92114903 92114903 + Missense_Mutation SNP T T C novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . . NM_001129890 exon1 c.T14C p.L5S AGAGATTGTTAAT . 58.0 9.0 48.0 0.0 . . LTF 4057 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 46492064 46492064 + Missense_Mutation SNP C C A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . LTF NM_002343 exon7 c.G803T p.R268L GGGACCCGGGCCA . 150.0 25.0 178.0 0.0 . 703 LYST 1130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 235973623 235973623 + Silent SNP G G T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . LYST NM_000081 exon5 c.C495A p.T165T ATCTGAGGTGGAG . 92.0 20.0 83.0 0.0 . 143 MFAP2 4237 hgsc.bcm.edu;bcgsc.ca 37 1 17301519 17301519 + Splice_Site SNP C C G novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . MFAP2 NM_001135248 exon10 c.446-1G>C . GGTCAGCTATTGG . 114.0 19.0 125.0 0.0 . 514 MPP6 51678 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 24705233 24705233 + Silent SNP C C T rs201576683 TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . MPP6 NM_016447 exon8 c.C810T p.S270S AGGAAGCGCTGGT . 88.0 27.0 99.0 0.0 C|0.999;T|0.000 90 MPPED1 758 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 43870736 43870736 + Missense_Mutation SNP T T A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . . NM_001044370 exon4 c.T527A p.L176Q CGAAGCTGAAGCC . 172.0 31.0 222.0 2.0 . . MROH1 727957 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 145234383 145234383 + Missense_Mutation SNP T T G novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . . NM_001099280 exon5 c.T194G p.V65G CAGCGGTCCTGAG . 245.0 62.0 243.0 1.0 . . NAALADL1 10004 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 64820704 64820704 + Missense_Mutation SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . NAALADL1 NM_005468 exon8 c.C1184T p.T395I AGCAGGGTCCCCA . 206.0 31.0 191.0 0.0 . 90 NCLN 56926 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 3206308 3206308 + Nonsense_Mutation SNP C C T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . NCLN NM_020170 exon12 c.C1384T p.Q462X ACCAACCAGCCGC . 109.0 27.0 105.0 0.0 . 90 NLRC5 84166 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 57060281 57060281 + Missense_Mutation SNP T T A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . NLRC5 NM_032206 exon5 c.T1426A p.Y476N ATCTTCTATGCAA . 66.0 15.0 94.0 0.0 . 159 OR10J5 127385 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 159504893 159504893 + Missense_Mutation SNP C C G novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . OR10J5 NM_001004469 exon1 c.G905C p.R302T ACAACTCTGCATA . 52.0 7.0 46.0 0.0 . 71 OR2A2 442361 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 143807041 143807041 + Nonsense_Mutation SNP T T A rs201869620 alternate_allele TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . OR2A2 NM_001005480 exon1 c.T366A p.Y122X TAGGTATGTGGCC . 159.0 21.0 143.0 0.0 T|0.999;C|0.001 92 OR51D1 390038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 4661048 4661048 + Missense_Mutation SNP A A G novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . OR51D1 NM_001004751 exon1 c.A28G p.I10V GTCCCTATCATAG . 50.0 8.0 79.0 0.0 . 68 OR51T1 401665 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 4903313 4903313 + Missense_Mutation SNP T T A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . OR51T1 NM_001004759 exon1 c.T265A p.Y89N CCCATGTATTATT . 79.0 16.0 97.0 0.0 . 115 OR5H14 403273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 97868812 97868812 + Missense_Mutation SNP A A T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . OR5H14 NM_001005514 exon1 c.A583T p.N195Y TCTATTAACTTTC . 52.0 15.0 62.0 0.0 . 91 OTUB1 55611 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 63755856 63755856 + Silent SNP C C A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . OTUB1 NM_017670 exon2 c.C106A p.R36R CAGGACCGAATTC . 82.0 13.0 113.0 1.0 . 501 PALB2 79728 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 23646654 23646654 + Missense_Mutation SNP G G T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . PALB2 NM_024675 exon4 c.C1213A p.P405T CTGCAGGAAACAG . 25.0 5.0 36.0 0.0 . 1351 PCDHA3 56145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140182464 140182464 + Missense_Mutation SNP A A G novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . PCDHA3 NM_031497 exon1 c.A1682G p.N561S ACGACAACGCGCC . 133.0 14.0 41.0 0.0 . 98 PDLIM3 27295 broad.mit.edu;bcgsc.ca 37 4 186446243 186446247 + Frame_Shift_Del DEL GACTC GACTC - novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 GACTC GACTC . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . PDLIM3 NM_001257962 exon2 c.172_176del p.58_59del GTCATGGACTCTG . 73.0 8.0 108.0 0.0 . 92 PHACTR3 116154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 58322830 58322830 + Missense_Mutation SNP G G T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . PHACTR3 NM_080672 exon3 c.G298T p.A100S AAGATGGCCGGCA . 103.0 15.0 183.0 0.0 . 93 PTPN22 26191 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 114380848 114380848 + Missense_Mutation SNP C C T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . PTPN22 NM_015967 exon13 c.G1174A p.D392N TTGTGTCAGCATT . 52.0 8.0 53.0 0.0 . 227 PYGB 5834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 25261588 25261588 + Missense_Mutation SNP G G A rs201813153 TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . PYGB NM_002862 exon11 c.G1243A p.V415M CAGCACGTGGCCG . 169.0 24.0 173.0 0.0 . 91 RAB3IP 117177 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 70206599 70206599 + Missense_Mutation SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . RAB3IP NM_175623 exon9 c.G1220A p.R407K AACACAGAATTAA . 75.0 13.0 116.0 0.0 . 227 RGPD3 653489 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 107041399 107041399 + Silent SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . RGPD3 NM_001144013 exon20 c.C3024T p.Y1008Y TTTACCGTATTGT . 95.0 11.0 105.0 1.0 . 23 RSPH1 89765 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 43896039 43896039 + Silent SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . RSPH1 NM_080860 exon8 c.C846T p.D282D CTCCTGGTCATAC . 104.0 24.0 114.0 0.0 . 227 RYR1 6261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 39071081 39071081 + Silent SNP C C T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . RYR1 NM_000540 exon101 c.C14583T p.R4861R CTTCCGCAAGTTC . 264.0 46.0 246.0 0.0 . 100 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 237778097 237778097 + Missense_Mutation SNP A A C novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . RYR2 NM_001035 exon37 c.A5669C p.K1890T GGCCCAAGGAAGG . 156.0 30.0 185.0 0.0 . 158 SDK1 221935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 4285345 4285345 + Missense_Mutation SNP T T C novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . SDK1 NM_152744 exon44 c.T6289C p.S2097P CACTACTCAGACG . 140.0 17.0 157.0 0.0 . 138 SEC23B 10483 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 18505223 18505223 + Missense_Mutation SNP G G C novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . SEC23B NM_032985 exon5 c.G513C p.R171S TGGAAGGATGGTG . 99.0 17.0 153.0 0.0 . 91 SLC2A4 6517 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 7187403 7187403 + Missense_Mutation SNP G G T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . SLC2A4 NM_001042 exon5 c.G559T p.A187S CTGATCGCCCAGG . 58.0 10.0 86.0 0.0 . 90 SLC39A14 23516 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 22273745 22273745 + Missense_Mutation SNP A A G novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . SLC39A14 NM_001135153 exon7 c.A1099G p.I367V CAAGGCATCAGCA . 147.0 23.0 140.0 0.0 . 90 SMG1 23049 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 18853630 18853630 + Silent SNP A A G novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . SMG1 NM_015092 exon40 c.T6366C p.H2122H CACACTATGGATT . 87.0 26.0 115.0 1.0 . 1160 SPATS2 65244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 49919817 49919817 + Missense_Mutation SNP A A G novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . SPATS2 NM_023071 exon14 c.A1417G p.M473V GACAGTATGGGTC . 231.0 49.0 309.0 0.0 . 135 SPEF2 79925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 35704679 35704679 + Missense_Mutation SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . SPEF2 NM_024867 exon17 c.G2422A p.A808T AAAACTGCTCACG . 40.0 7.0 63.0 0.0 . 26 THAP7 80764 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 21354333 21354333 + Missense_Mutation SNP G G A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . THAP7 NM_030573 exon4 c.C766T p.R256C GCTGGCGCTGGGC . 122.0 23.0 92.0 0.0 . 278 TNKS2 80351 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 93558647 93558647 + Splice_Site SNP G G T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . TNKS2 NM_025235 exon1 c.199+1G>T . CCGCAGGTAACCG . 75.0 12.0 67.0 0.0 . 541 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7576633 7576633 + Missense_Mutation SNP T T C novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . TP53 NM_001126114 exon10 c.A1018G p.N340D AACAATTTTCTTT . 42.0 16.0 109.0 0.0 . 70225 TRIM67 440730 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 231344856 231344857 + Frame_Shift_Ins INS - - A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . TRIM67 NM_001004342 exon8 c.1983_1984insA p.D661fs GTACGACAACCAC . 274.0 84.0 246.0 0.0 . 229 TRPC3 7222 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 122853884 122853884 + Missense_Mutation SNP C C T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . TRPC3 NM_001130698 exon2 c.G529A p.D177N GGGCGTCGCCAAT . 132.0 28.0 152.0 0.0 . 92 TSC2 7249 hgsc.bcm.edu;bcgsc.ca 37 16 2136306 2136311 + In_Frame_Del DEL TGTACC TGTACC - novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 TGTACC TGTACC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . TSC2 NM_000548 exon37 c.4775_4780del p.1592_1594del ACAAGGTGTACCT . 158.0 20.0 241.0 0.0 . 1908 TTC24 164118 bcgsc.ca;mdanderson.org 37 1 156551495 156551495 + Silent SNP C C T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . TTC24 NM_001105669 exon2 c.C339T p.G113G ACAGGGCAGGCGA . 172.0 18.0 182.0 1.0 . 46 TTC28 23331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 28494971 28494971 + Missense_Mutation SNP T T C novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . . NM_001145418 exon10 c.A3479G p.Y1160C AGTTTGTAGTCCG . 245.0 25.0 204.0 0.0 . . TUBA3D 113457 ucsc.edu;bcgsc.ca 37 2 132238309 132238309 + Missense_Mutation SNP C C A rs200206202 alternate_allele TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . TUBA3D NM_080386 exon4 c.C1043A p.P348Q GGTGCCCGACTGG . 132.0 18.0 164.0 2.0 C|0.999;T|0.000 44 TUBE1 51175 hgsc.bcm.edu;bcgsc.ca 37 6 112408489 112408489 + Missense_Mutation SNP T T A novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . TUBE1 NM_016262 exon2 c.A46T p.I16F AGCCGATCTGGTT . 280.0 31.0 336.0 0.0 . 91 TUBE1 51175 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 112408473 112408484 + In_Frame_Del DEL CAGAAGCAGCAG CAGAAGCAGCAG - novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 CAGAAGCAGCAG CAGAAGCAGCAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . TUBE1 NM_016262 exon2 c.51_62del p.17_21del AGGTCCCAGAAGC . 261.0 22.0 307.0 0.0 . 91 USP16 10600 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 30419571 30419571 + Missense_Mutation SNP G G T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . USP16 NM_006447 exon14 c.G1940T p.R647L AACTTCGAGATGC . 68.0 9.0 106.0 1.0 . 659 WDR49 151790 broad.mit.edu;bcgsc.ca 37 3 167272493 167272493 + Frame_Shift_Del DEL T T - novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . WDR49 NM_178824 exon6 c.745delA p.I249fs CCAGTATTTTCTT . 24.0 9.0 40.0 0.0 . 155 ZFAT 57623 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 135613836 135613836 + Missense_Mutation SNP C C A rs201041569 alternate_allele TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . ZFAT NM_020863 exon6 c.G2126T p.R709L CCTGACCGGTGCT . 183.0 33.0 162.0 1.0 C|0.999;T|0.001 90 ZFHX4 79776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 77767616 77767616 + Missense_Mutation SNP A A C novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . ZFHX4 NM_024721 exon10 c.A8459C p.N2820T AGGGAAACACTGA . 43.0 11.0 82.0 0.0 . 98 ZFPM2 23414 broad.mit.edu;ucsc.edu 37 8 106813669 106813669 + Missense_Mutation SNP A A T novel TCGA-DD-A4NQ-01A-21D-A28X-10 TCGA-DD-A4NQ-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c2df6b36-605d-46f7-8c66-d9625766c023 7985bd29-3002-4677-91fc-3754d1e3f0a4 . ZFPM2 NM_012082 exon8 c.A1359T p.R453S CCAGAGACCAGAG . 39.0 4.0 44.0 0.0 . 139