Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACACA	31	hgsc.bcm.edu;broad.mit.edu	37	17	35580444	35580444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	ACACA	NM_198834	exon28	c.G3553A	p.A1185T	GAGCTGCCATCCT	.	84.0	4.0	76.0	0.0	.	154
ANKRD66	100287718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	46726569	46726569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	.	NM_001162435	exon5	c.C667T	p.L223F	CTGTCTCTTCCTT	.	76.0	15.0	53.0	0.0	.	.
APOB	338	hgsc.bcm.edu;broad.mit.edu	37	2	21233945	21233945	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	APOB	NM_000384	exon26	c.5795delT	p.L1932fs	TTCAACAGGAATT	.	154.0	13.0	147.0	0.0	.	175
APOL4	80832	broad.mit.edu;bcgsc.ca	37	22	36587462	36587462	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	APOL4	.	.	.	.	TTTTGTGGCTTCG	.	88.0	5.0	75.0	0.0	.	90
AURKA	6790	broad.mit.edu;bcgsc.ca	37	20	54958068	54958068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	AURKA	NM_198437	exon5	c.G539A	p.R180K	ACTTCTCTTCTGA	.	93.0	7.0	80.0	0.0	.	1601
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	160310259	160310259	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	BAZ2B	NM_013450	exon4	c.A199C	p.S67R	AGGCACTCGACAC	.	124.0	10.0	107.0	0.0	.	94
C20orf173	140873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34116559	34116559	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	.	NM_001145350	exon3	c.C459T	p.N153N	GATGTCGTTGCCA	.	51.0	9.0	42.0	0.0	.	.
C5orf51	285636	broad.mit.edu;bcgsc.ca	37	5	41904516	41904516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	C5orf51	NM_175921	exon1	c.G47A	p.G16E	AGCTCGGGGATCT	.	130.0	8.0	117.0	1.0	.	68
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1949905	1949905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	CACNA2D4	NM_172364	exon26	c.G2551A	p.A851T	TCCTACCTGCAGC	.	21.0	6.0	37.0	0.0	.	23
CARD16	114769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	104912234	104912234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	CARD16	NM_001017534	exon3	c.C487T	p.R163W	AGAACCGCTCAAT	.	120.0	12.0	113.0	1.0	.	228
CCDC169-SOHLH2	100526761	broad.mit.edu;bcgsc.ca	37	13	36747876	36747876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	.	NM_001198910	exon14	c.G1184T	p.G395V	GAGCACCCATTCC	.	64.0	5.0	64.0	0.0	.	.
CCDC88B	283234	broad.mit.edu;bcgsc.ca	37	11	64111617	64111617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	CCDC88B	NM_032251	exon14	c.C1604T	p.P535L	CTCCCCCGGCATT	.	64.0	4.0	62.0	0.0	.	94
CD46	4179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207934716	207934716	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	CD46	NM_172352	exon5	c.598delT	p.F200fs	GATCCATTTTCAC	.	132.0	22.0	117.0	0.0	.	963
CD8B	926	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	87073896	87073896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	CD8B	NM_004931	exon4	c.G494A	p.G165D	AGTGGGCCTGGAA	.	475.0	39.0	476.0	0.0	.	92
CPN1	1369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101823465	101823465	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	CPN1	NM_001308	exon5	c.C777A	p.S259S	TGCATAGGAGTAG	.	80.0	10.0	53.0	0.0	.	227
CXCR4	7852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136872511	136872511	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	CXCR4	NM_001008540	exon1	c.C999T	p.L333L	TTTGGAGAGGATC	.	218.0	24.0	176.0	0.0	.	1082
DMAP1	55929	broad.mit.edu;ucsc.edu	37	1	44684852	44684852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	DMAP1	NM_001034023	exon7	c.G845A	p.R282Q	AGCAGCGGCGCAC	.	79.0	5.0	60.0	1.0	.	226
DMXL2	23312	broad.mit.edu;ucsc.edu	37	15	51868294	51868294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	DMXL2	NM_001174117	exon2	c.A172G	p.I58V	CTTGGATGTTTCC	.	40.0	4.0	37.0	0.0	.	99
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	57488148	57488148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	DNAH12	NM_198564	exon10	c.C1145A	p.T382K	AGTTCTGTGTCAA	.	155.0	12.0	129.0	0.0	.	47
EPHA10	284656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38227457	38227457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	EPHA10	NM_001099439	exon3	c.C470T	p.A157V	TCGTCCGCCGCGA	.	74.0	8.0	80.0	0.0	.	1246
FAM149B1	317662	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	74970149	74970149	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	.	NM_173348	exon7	c.G851C	p.S284T	TTGTGAGCTGTAT	.	204.0	13.0	195.0	0.0	.	.
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	39264479	39264479	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	FREM2	NM_207361	exon1	c.C2998G	p.P1000A	GGCATTCCAGCAG	.	148.0	13.0	147.0	0.0	.	100
GFPT2	9945	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	179780211	179780211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	GFPT2	NM_005110	exon1	c.G7A	p.G3R	ACTCACCGCACAT	.	70.0	7.0	55.0	0.0	.	92
GPR137C	283554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	53098899	53098899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	GPR137C	NM_001099652	exon4	c.G739A	p.V247I	CAGACTGTCGTCG	.	146.0	12.0	150.0	0.0	.	68
GRIA3	2892	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	122536848	122536848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	GRIA3	NM_000828	exon8	c.C1084A	p.Q362K	CAGGTGCAAGTAC	.	548.0	31.0	500.0	2.0	.	134
GRM4	2914	broad.mit.edu;bcgsc.ca	37	6	34003577	34003577	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	GRM4	NM_000841	exon9	c.T2310C	p.Y770Y	GATGGCATACACG	.	173.0	11.0	102.0	1.0	.	525
HHATL	57467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	42738590	42738590	+	Missense_Mutation	SNP	C	C	T	rs202043526		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	HHATL	NM_020707	exon8	c.G913A	p.V305I	AGAGGACGGCCGC	.	123.0	7.0	119.0	0.0	C|1.000;T|0.000	93
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	118250523	118250523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	KIAA1210	NM_020721	exon4	c.T586C	p.S196P	TGCTGGACAAGCT	.	152.0	13.0	133.0	0.0	.	67
KLHL9	55958	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21334572	21334572	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	KLHL9	NM_018847	exon1	c.A287C	p.H96P	ACCCCATGAAGCT	.	193.0	14.0	197.0	0.0	.	94
KRT73	319101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53007536	53007536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	KRT73	NM_175068	exon5	c.G920A	p.R307H	TGGGCACGGACCT	.	93.0	6.0	77.0	0.0	.	157
KSR2	283455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	118198839	118198839	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	KSR2	NM_173598	exon4	c.C876T	p.R292R	GTCCACGCGGTGC	.	104.0	7.0	99.0	0.0	.	1449
LHPP	64077	broad.mit.edu;bcgsc.ca	37	10	126150438	126150438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	LHPP	NM_022126	exon1	c.C7T	p.P3S	ATGGCACCGTGGG	.	85.0	6.0	79.0	0.0	.	90
MAPK6	5597	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	52342240	52342240	+	Silent	SNP	T	T	G	rs41480651		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	MAPK6	NM_002748	exon3	c.T606G	p.L202L	ACGTCTTTTACTT	.	115.0	6.0	118.0	0.0	T|1.000;|0.000	1403
MED27	9442	hgsc.bcm.edu;broad.mit.edu	37	9	134735980	134735980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	MED27	NM_004269	exon8	c.C881T	p.P294L	CATGTCGGGGGAA	.	102.0	7.0	87.0	0.0	.	69
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1080902	1080902	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	MUC2	NM_002457	exon10	c.T1286A	p.L429Q	CTCTCCTGGGCGA	.	95.0	7.0	65.0	0.0	.	90
NAGLU	4669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40689487	40689487	+	Missense_Mutation	SNP	G	G	A	rs141018386		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	NAGLU	NM_000263	exon2	c.G455A	p.R152Q	GGGAGCGAGAGAT	.	84.0	10.0	70.0	0.0	G|1.000;A|0.000	90
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	29592318	29592318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	NF1	NM_001042492	exon36	c.C4796A	p.S1599Y	GGACTTCCAAAGC	.	303.0	19.0	268.0	0.0	.	3353
NPTXR	23467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39222683	39222683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	NPTXR	NM_014293	exon3	c.C920A	p.A307D	ACGCGGGCGTACA	.	88.0	13.0	68.0	0.0	.	92
OR2W5	441932	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	247655366	247655366	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	OR2W5	NM_001004698	exon1	c.G937T	p.G313X	GGCTGGGGAGCCT	.	81.0	6.0	74.0	0.0	.	115
OR51S1	119692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4869689	4869689	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	OR51S1	NM_001004758	exon1	c.C750A	p.A250A	GAGGTGGGCAGCA	.	124.0	13.0	101.0	0.0	.	72
OXTR	5021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	8809008	8809008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	OXTR	NM_000916	exon3	c.C866T	p.T289M	AAAGGCGTCCAGC	.	119.0	9.0	85.0	0.0	.	68
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140799054	140799054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	PCDHGB7	NM_018927	exon1	c.G1628T	p.S543I	CGCTCAGCGCCAA	.	92.0	8.0	85.0	0.0	.	29
PCNXL2	80003	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	233394746	233394746	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	PCNXL2	NM_014801	exon5	c.G862C	p.V288L	AACTGACAGGTTC	.	91.0	15.0	74.0	1.0	.	91
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	7615936	7615936	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	PNPLA6	NM_001166111	exon19	c.G2154A	p.T718T	CGACACGGAGCTG	.	62.0	7.0	47.0	0.0	.	47
POLG	5428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	89866679	89866679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	POLG	NM_002693	exon13	c.G2221T	p.D741Y	CCACGTCGTTGTA	.	100.0	4.0	98.0	0.0	.	228
PRKACA	5566	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14208612	14208612	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	PRKACA	NM_002730	exon6	c.G510A	p.P170P	ATTCTCCGGCTTC	.	100.0	10.0	100.0	1.0	.	978
PRKCA	5578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	64800042	64800042	+	Missense_Mutation	SNP	G	G	A	rs141376042	byfrequency	TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	PRKCA	NM_002737	exon17	c.G1906A	p.V636I	CAGCCCGTCTTAA	.	72.0	7.0	95.0	0.0	G|0.998;A|0.002	1404
SBK2	646643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56042689	56042689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	SBK2	NM_001101401	exon3	c.C277A	p.L93I	TCGGGAGCTGCTT	.	26.0	4.0	32.0	0.0	.	68
SCAF4	57466	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	33077755	33077755	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	SCAF4	NM_020706	exon3	c.T140A	p.V47E	TTTTCTACTATTT	.	277.0	19.0	289.0	1.0	.	90
SCN3A	6328	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	165947139	165947139	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	SCN3A	NM_006922	exon28	c.G5524C	p.V1842L	CACTGACCATGGG	.	269.0	22.0	229.0	0.0	.	141
SESTD1	91404	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179997118	179997118	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	SESTD1	NM_178123	exon10	c.A885G	p.Q295Q	TCTTAGTTGTTCT	.	98.0	5.0	74.0	0.0	.	228
SLC13A1	6561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	122774465	122774465	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	SLC13A1	NM_022444	exon8	c.A931T	p.N311Y	CTTACTTGAATCC	.	116.0	8.0	90.0	0.0	.	92
SSPO	23145	broad.mit.edu;ucsc.edu	37	7	149520825	149520825	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	.	NM_198455	exon93	c.C13402T	p.Q4468X	CTGGAGCAGGCTG	.	52.0	6.0	63.0	0.0	.	.
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	113192621	113192621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	SVEP1	NM_153366	exon33	c.G5463T	p.L1821F	TCCCATCAACTGG	.	163.0	12.0	120.0	0.0	.	75
SYNGR1	9145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	39746105	39746105	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	SYNGR1	NM_145731	exon1	c.C90A	p.V30V	GCGCGTCGTGTCT	.	56.0	5.0	49.0	0.0	.	90
TKTL2	84076	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	164393857	164393857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	TKTL2	NM_032136	exon1	c.G1030T	p.G344C	TGTCACCACTCAG	.	126.0	10.0	91.0	1.0	.	95
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179584040	179584040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	TTN	NM_001267550	exon83	c.T24077C	p.V8026A	CCACTAACAATCT	.	110.0	7.0	100.0	0.0	.	636
ZBTB40	9923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	22838185	22838185	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	ZBTB40	NM_001083621	exon12	c.A2019C	p.E673D	TAAGGAAGATGGA	.	209.0	18.0	175.0	0.0	.	91
ZC3HAV1	56829	hgsc.bcm.edu;broad.mit.edu	37	7	138768681	138768681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	ZC3HAV1	NM_024625	exon3	c.A542G	p.N181S	CGACAGTTCCCTC	.	94.0	4.0	74.0	0.0	.	91
ZNF300	91975	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	150275398	150275398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	ZNF300	NM_001172831	exon7	c.C1451A	p.T484N	CATTCAGTACATT	.	95.0	5.0	73.0	0.0	.	92
ZNF430	80264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	21216304	21216304	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	ZNF430	NM_025189	exon3	c.G139T	p.E47X	TCTCTGGAGGAGT	.	176.0	19.0	148.0	0.0	.	516
ZNF517	340385	broad.mit.edu;mdanderson.org	37	8	146033060	146033060	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NS-01A-11D-A30V-10	TCGA-DD-A4NS-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5abd0e3f-8431-4596-bc8a-f0a2a4b470b4	2c0ffc41-1663-4f25-8210-f48f55f1f30d	.	ZNF517	NM_213605	exon5	c.C759T	p.R253R	CCACCGCGTCCAC	.	40.0	6.0	28.0	0.0	.	90