Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq AADACL3 126767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 12785194 12785194 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . AADACL3 NM_001103170 exon4 c.G284A p.R95H GTTACCGCAAGTT . 136.0 36.0 114.0 0.0 . 22 ACACB 32 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 109677646 109677646 + Missense_Mutation SNP C C A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ACACB NM_001093 exon34 c.C4674A p.F1558L CTCCTTCGAATAC . 66.0 12.0 50.0 0.0 . 98 ACO2 50 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 41895734 41895734 + Missense_Mutation SNP C C G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ACO2 NM_001098 exon2 c.C41G p.A14G AGAAAGCTCTGGG . 27.0 10.0 19.0 0.0 . 290 ADCY7 113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 50339757 50339757 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ADCY7 NM_001114 exon13 c.C1749T p.R583R TGAGCGCGAGGTG . 113.0 41.0 106.0 0.0 . 91 ALMS1 7840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 73799982 73799982 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ALMS1 NM_015120 exon16 c.G10975A p.V3659M CGAAGTGTGAAGG . 150.0 37.0 98.0 0.0 . 142 ATP4A 495 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 36050844 36050844 + Missense_Mutation SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ATP4A NM_000704 exon7 c.G919A p.A307T GGCCCGCGATGAT . 185.0 53.0 183.0 1.0 . 91 AUP1 550 broad.mit.edu;bcgsc.ca 37 2 74754660 74754660 + Missense_Mutation SNP A A T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . AUP1 NM_181575 exon9 c.T899A p.L300Q TGAGCCAGAGTTG . 85.0 5.0 62.0 0.0 . 90 C3orf72 401089 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 138669208 138669208 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . C3orf72 NM_001040061 exon3 c.G322A p.A108T GGCAGCGCTTCGC . 76.0 26.0 51.0 0.0 . 22 C7orf43 55262 hgsc.bcm.edu;broad.mit.edu 37 7 99754128 99754128 + Missense_Mutation SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . C7orf43 NM_018275 exon8 c.C1121A p.A374D CAAGAAGCGGTCA . 118.0 5.0 81.0 0.0 . 90 CAMK2N1 55450 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 20811831 20811831 + Silent SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CAMK2N1 NM_018584 exon1 c.C42A p.P14P GCCGTAGGGGCTC . 43.0 14.0 42.0 0.0 . 93 CAMTA1 23261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 7723459 7723459 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CAMTA1 NM_015215 exon9 c.C852T p.R284R ACACCGCATCATC . 135.0 44.0 126.0 0.0 . 520 CARD10 29775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 37893159 37893159 + Missense_Mutation SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CARD10 NM_014550 exon12 c.G1814A p.R605Q GGGCTCCGGCCAG . 149.0 80.0 84.0 0.0 . 662 CCDC79 283847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 66822199 66822199 + Silent SNP A A C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . . NM_001136505 exon6 c.T273G p.V91V ACAGTAAACTGAA . 461.0 147.0 364.0 1.0 . . CEP70 80321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 138289885 138289885 + Missense_Mutation SNP T T C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CEP70 NM_024491 exon5 c.A275G p.Q92R AGCTGTTGATTAG . 210.0 59.0 182.0 0.0 . 69 CHRNA4 1137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 61981053 61981053 + Silent SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CHRNA4 NM_000744 exon5 c.C1710T p.G570G CTGGACGCCCTCC . 127.0 61.0 82.0 0.0 . 91 COL4A6 1288 ucsc.edu;bcgsc.ca 37 X 107402853 107402853 + Missense_Mutation SNP G G T rs201417622 alternate_allele TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . COL4A6 NM_001847 exon44 c.C4654A p.P1552T TCATGGGGATAGG . 257.0 106.0 202.0 2.0 G|0.999;C|0.001 199 CROT 54677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 86986879 86986879 + Silent SNP T T C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CROT NM_001143935 exon4 c.T172C p.L58L GGGTTCTTGGATC . 32.0 9.0 28.0 0.0 . 280 CXorf36 79742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 45011086 45011086 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CXorf36 NM_176819 exon5 c.G1113A p.Q371Q CCTCCCCTGGAGA . 149.0 53.0 153.0 0.0 . 130 CXorf38 159013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 40498275 40498275 + Missense_Mutation SNP T T G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CXorf38 NM_144970 exon3 c.A457C p.K153Q CTTTCTTTCGATC . 109.0 39.0 86.0 0.0 . 131 DCC 1630 broad.mit.edu;bcgsc.ca 37 18 50278659 50278659 + Missense_Mutation SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . DCC NM_005215 exon2 c.G327T p.K109N CCACAAGCCAGAT . 190.0 8.0 126.0 1.0 . 225 DMXL2 23312 broad.mit.edu;bcgsc.ca 37 15 51757753 51757761 + Splice_Site DEL CCAAACTCA CCAAACTCA - novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 CCAAACTCA CCAAACTCA . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . DMXL2 . . . . TAAATTCCAAACT . 207.0 32.0 204.0 0.0 . 99 DPF2 5977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 65116351 65116351 + Missense_Mutation SNP C C G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . DPF2 NM_006268 exon10 c.C1048G p.R350G TGCGATCGTGGCT . 158.0 9.0 139.0 0.0 . 91 EBF1 1879 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 158158157 158158157 + Missense_Mutation SNP C C G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . EBF1 NM_024007 exon11 c.G1045C p.E349Q TGGGTTCGTTGAG . 84.0 30.0 53.0 0.0 . 92 EYS 346007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 65301374 65301374 + Silent SNP A A G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . EYS NM_001142800 exon26 c.T4386C p.S1462S CCCCCTAGAGACA . 79.0 22.0 79.0 0.0 . 660 F10 2159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 113795287 113795287 + Missense_Mutation SNP A A T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . F10 NM_000504 exon5 c.A425T p.E142V GCCACGAGGAACA . 117.0 27.0 91.0 0.0 . 227 FAM135B 51059 broad.mit.edu;bcgsc.ca 37 8 139164944 139164944 + Missense_Mutation SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . FAM135B NM_015912 exon13 c.C1774A p.L592I TGCTTAGCCCAGT . 72.0 6.0 70.0 0.0 . 31 FAM46D 169966 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 79698375 79698375 + Missense_Mutation SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . FAM46D NM_001170574 exon5 c.C337T p.P113S TTTTTACCAAAAG . 158.0 52.0 154.0 0.0 . 130 FCGRT 2217 broad.mit.edu;ucsc.edu 37 19 50017250 50017250 + Missense_Mutation SNP A A T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . FCGRT NM_001136019 exon3 c.A185T p.N62I GCTACAATAGCCT . 71.0 4.0 72.0 0.0 . 91 FILIP1 27145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 76124503 76124503 + Silent SNP A A T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . FILIP1 NM_015687 exon2 c.T186A p.S62S TTCTCCAGATGTT . 244.0 67.0 219.0 0.0 . 94 FRAS1 80144 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 79229242 79229242 + Silent SNP T T C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . FRAS1 NM_001166133 exon15 c.T1557C p.G519G TGCAGGTTGCTGG . 130.0 40.0 124.0 2.0 . 68 GDF10 2662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 48428812 48428812 + Silent SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . GDF10 NM_004962 exon2 c.C1074T p.D358D CTTCTCGTCAAAG . 160.0 49.0 122.0 0.0 . 650 GET4 51608 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 930603 930603 + Missense_Mutation SNP T T G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . GET4 NM_015949 exon5 c.T505G p.S169A CTGCACTCAGCGG . 186.0 56.0 148.0 0.0 . 90 GJA8 2703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 147380859 147380859 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . GJA8 NM_005267 exon2 c.C777T p.S259S CTCCTCCATCCAG . 110.0 39.0 72.0 0.0 . 138 GPR101 83550 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 136113472 136113472 + Missense_Mutation SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . GPR101 NM_054021 exon1 c.C362A p.T121N ACAATGGTGTTGA . 73.0 36.0 39.0 0.0 . 134 HUWE1 10075 broad.mit.edu;bcgsc.ca 37 X 53577955 53577955 + Silent SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . HUWE1 NM_031407 exon65 c.C9292A p.R3098R GCTCTCGTCTCAG . 131.0 6.0 136.0 0.0 . 280 IGDCC3 9543 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 65622666 65622666 + Missense_Mutation SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . IGDCC3 NM_004884 exon11 c.G1823A p.R608H ACAAAGCGGACTG . 107.0 40.0 97.0 0.0 . 93 INO80 54617 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 41388013 41388013 + Missense_Mutation SNP C C A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . INO80 NM_017553 exon3 c.G257T p.G86V CCTGCTCCAGAAG . 101.0 33.0 93.0 0.0 . 72 IRX1 79192 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 3599546 3599546 + Missense_Mutation SNP A A G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . IRX1 NM_024337 exon2 c.A484G p.M162V AAGATCATGCTGG . 117.0 43.0 123.0 0.0 . 228 ITPR1 3708 broad.mit.edu;bcgsc.ca 37 3 4681100 4681100 + Missense_Mutation SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ITPR1 NM_001099952 exon6 c.G312T p.E104D GAATGAGACAGAA . 135.0 8.0 108.0 0.0 . 710 KCNN4 3783 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 44278585 44278585 + Missense_Mutation SNP C C G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . KCNN4 NM_002250 exon3 c.G442C p.G148R CTTCCCCTTGGCC . 47.0 18.0 62.0 0.0 . 92 KRTAP13-2 337959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 31744148 31744148 + Silent SNP T T C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . KRTAP13-2 NM_181621 exon1 c.A384G p.R128R CAGGGATCTGACA . 91.0 31.0 86.0 0.0 . 90 LMNB2 84823 ucsc.edu;bcgsc.ca 37 19 2431870 2431870 + Missense_Mutation SNP T T C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . LMNB2 NM_032737 exon10 c.A1621G p.S541G GGGGGCTGTGGGC . 44.0 4.0 32.0 0.0 . 290 LNPEP 4012 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 96350727 96350727 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . LNPEP NM_005575 exon13 c.C2304T p.A768A CGAAGCCCTGTTT . 152.0 13.0 114.0 0.0 . 229 MAP4K3 8491 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 39481600 39481600 + Missense_Mutation SNP T T A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . MAP4K3 NM_003618 exon32 c.A2532T p.R844S ATTAGATCTAAAA . 88.0 33.0 90.0 0.0 . 550 MC3R 4159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 54824818 54824818 + Missense_Mutation SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a MC3R,NS,carcinoma,0 MC3R NM_019888 exon1 c.C919T p.R307C GAATTGCGCAACA . 203.0 53.0 131.0 0.0 . 660 MGA 23269 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 15 42028493 42028493 + Nonsense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . MGA NM_001080541 exon13 c.G4031A p.W1344X GCAACTGGGAGGA . 96.0 33.0 83.0 0.0 . 522 MINK1 50488 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 4789860 4789860 + Silent SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . MINK1 NM_170663 exon10 c.G888A p.R296R GGAGCGGCAGGTC . 65.0 20.0 55.0 0.0 . 943 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9074914 9074914 + Missense_Mutation SNP A A G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . MUC16 NM_024690 exon3 c.T12532C p.S4178P CTTGTGATGTCAA . 181.0 64.0 128.0 0.0 . 566 MYT1L 23040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 1926429 1926429 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . MYT1L NM_015025 exon10 c.C1112T p.T371M TCCGGCGTCCTTC . 98.0 35.0 84.0 0.0 . 95 NDST4 64579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 115773896 115773896 + Missense_Mutation SNP C C G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . NDST4 NM_022569 exon8 c.G1801C p.G601R GTGGACCAATTAC . 133.0 40.0 132.0 0.0 . 94 NLRP4 147945 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 56369797 56369797 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . NLRP4 NM_134444 exon3 c.C1038T p.I346I CTGGATCCTGTGT . 74.0 32.0 49.0 0.0 . 216 OR14A16 284532 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 247978151 247978151 + Missense_Mutation SNP A A G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . OR14A16 NM_001001966 exon1 c.T881C p.I294T ACCTTTATGGCCT . 150.0 31.0 139.0 0.0 . 46 PCDHA12 56137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140255085 140255085 + Missense_Mutation SNP G G C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . . NM_018903 exon1 c.G28C p.G10R GGCCCGGGATCCC . 92.0 33.0 49.0 0.0 . . PHAX 51808 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 125944167 125944167 + Silent SNP C C A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PHAX NM_032177 exon3 c.C822A p.L274L TGGTCTCTTTATA . 79.0 20.0 56.0 0.0 . 90 PIGB 9488 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 55647553 55647553 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PIGB NM_004855 exon12 c.G1588A p.E530K TTGCCAGAGGGTC . 181.0 13.0 147.0 0.0 . 226 PIK3C2B 5287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 204394000 204394000 + Nonsense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PIK3C2B NM_002646 exon34 c.C4885T p.R1629X GACTTCGAGATCC . 117.0 50.0 106.0 0.0 . 1310 PLA2G4C 8605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 48602999 48602999 + Missense_Mutation SNP C C G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PLA2G4C NM_001159322 exon5 c.G406C p.A136P TCGCTGCTTGGAT . 96.0 27.0 92.0 0.0 . 92 PLA2R1 22925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 160840493 160840493 + Missense_Mutation SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PLA2R1 NM_001195641 exon13 c.C2129A p.A710D ATATGGGCAAAGC . 205.0 69.0 195.0 0.0 . 93 POU5F1B 5462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 128428642 128428642 + Silent SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . . NM_001159542 exon1 c.G531A p.K177K TGGGAAGGTGTTC . 71.0 21.0 60.0 0.0 . . PRKG1 5592 broad.mit.edu;bcgsc.ca 37 10 52751168 52751168 + Missense_Mutation SNP G G C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PRKG1 NM_001098512 exon1 c.G30C p.K10N TGCCAAGATTCTC . 237.0 10.0 180.0 1.0 . 523 PRPF4 9128 broad.mit.edu;bcgsc.ca 37 9 116045492 116045492 + Splice_Site SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PRPF4 NM_004697 exon5 c.563+1G>T . GCCCAGGTAAAGA . 131.0 7.0 141.0 0.0 . 93 PRRT1 80863 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 32117487 32117487 + Missense_Mutation SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PRRT1 NM_030651 exon3 c.G571A p.G191R GGGTCCCGCCTGC . 33.0 12.0 28.0 0.0 . 153 PTPN13 5783 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 87701601 87701601 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PTPN13 NM_080685 exon36 c.G5953A p.A1985T GTTTCAGCTCCAA . 84.0 34.0 74.0 0.0 . 230 PTPRB 5787 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 71003577 71003577 + Silent SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PTPRB NM_001206972 exon1 c.C18T p.A6A CAACCCGGCTCCA . 93.0 27.0 74.0 0.0 . 226 RANBP3L 202151 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 36253830 36253830 + Missense_Mutation SNP C C A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . RANBP3L NM_001161429 exon13 c.G1161T p.K387N TTGAATCTTCATT . 137.0 37.0 109.0 0.0 . 91 RPE65 6121 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 68897225 68897225 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . RPE65 NM_000329 exon11 c.C1172T p.A391V GCAGTGGCAGTTG . 89.0 29.0 80.0 0.0 . 91 RPH3A 22895 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 113303242 113303242 + Missense_Mutation SNP A A T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . RPH3A NM_001143854 exon6 c.A254T p.N85I TAGAAAACATGAG . 88.0 18.0 90.0 0.0 . 519 SCIN 85477 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 12610490 12610490 + Silent SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SCIN NM_001112706 exon1 c.G78A p.K26K TGAGAAGCTGGAG . 69.0 15.0 87.0 0.0 . 24 SEMA7A 8482 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 74703983 74703983 + Silent SNP G G A rs150179930 byfrequency TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SEMA7A NM_003612 exon12 c.C1491T p.G497G GCCCCCGCCATAG . 72.0 21.0 28.0 0.0 G|0.994;A|0.006 153 SLC12A1 6557 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 48500235 48500235 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SLC12A1 NM_001184832 exon2 c.G319A p.D107N ACCATGGATGCCG . 99.0 37.0 91.0 1.0 . 24 SLC27A6 28965 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 128364118 128364118 + Missense_Mutation SNP A A T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SLC27A6 NM_001017372 exon8 c.A1535T p.Y512F ACGTCTATGGTGT . 70.0 17.0 67.0 0.0 . 90 SLC29A1 2030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 44197695 44197695 + Silent SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SLC29A1 NM_004955 exon5 c.G366T p.V122V GCTGGTGTTTCTG . 68.0 23.0 57.0 0.0 . 154 SLC5A11 115584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 24920370 24920370 + Missense_Mutation SNP A A C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SLC5A11 NM_052944 exon14 c.A1603C p.T535P CTCATCACTGTCT . 109.0 10.0 102.0 0.0 . 92 SLITRK1 114798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 84454719 84454719 + Silent SNP A A T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SLITRK1 NM_052910 exon1 c.T924A p.G308G CTTTGTACCTCCG . 83.0 42.0 125.0 0.0 . 94 SLTM 79811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 59192012 59192012 + Silent SNP A A G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SLTM NM_024755 exon7 c.T714C p.A238A ATCCTCAGCTTCT . 124.0 43.0 106.0 0.0 . 91 SOGA2 23255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 8784213 8784213 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . . NM_015210 exon6 c.G1103A p.R368H TCCAGCGCTGCGA . 58.0 14.0 34.0 0.0 . . SP4 6671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 21521737 21521737 + Silent SNP T T C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SP4 NM_003112 exon5 c.T2103C p.H701H AACCCATACAGGT . 156.0 53.0 135.0 0.0 . 95 SPATA31A6 389730 broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 43625397 43625397 + Missense_Mutation SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . . NM_001145196 exon4 c.G3290A p.R1097K ATTGGCCTTTGGC . 251.0 70.0 216.0 1.0 . . SPCS2 9789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 74660392 74660392 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SPCS2 NM_014752 exon1 c.G62A p.G21D GGGCTGGTGGTGC . 66.0 25.0 43.0 0.0 . 113 ST18 9705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 53084937 53084937 + Missense_Mutation SNP C C A rs147121734 alternate_allele TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ST18 NM_014682 exon10 c.G484T p.D162Y CTTCATCGCTCTC . 150.0 42.0 117.0 0.0 C|0.999;T|0.000 95 TBXAS1 6916 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 139653169 139653169 + Missense_Mutation SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . TBXAS1 NM_001166253 exon7 c.G594T p.M198I TCAGATGGTTCCC . 52.0 5.0 47.0 0.0 . 155 TDRD1 56165 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 115985937 115985937 + Missense_Mutation SNP T T C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . TDRD1 NM_198795 exon22 c.T3137C p.L1046P GCCACCTGGCGCT . 100.0 38.0 87.0 0.0 . 90 TKTL1 8277 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153556013 153556013 + Missense_Mutation SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . TKTL1 NM_012253 exon11 c.C1478T p.A493V CAGCTGCTGATGA . 214.0 62.0 205.0 1.0 . 134 TM9SF3 56889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 98325145 98325145 + Missense_Mutation SNP C C A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . TM9SF3 NM_020123 exon3 c.G337T p.D113Y CTTTATCTAAATC . 90.0 26.0 61.0 0.0 . 90 TPTE 7179 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 21 10971325 10971325 + Missense_Mutation SNP G G T rs139096194 byfrequency;alternate_allele TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . TPTE NM_199259 exon5 c.C32A p.A11E ACTCCCGCCAGGT . 101.0 21.0 51.0 0.0 G|1.000;A|0.000 344 TRIL 9865 broad.mit.edu;mdanderson.org 37 7 28995704 28995704 + RNA SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . . . . . . GGTGTCCCCGCGC . 15.0 4.0 11.0 0.0 . . UNC80 285175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 210696272 210696272 + Missense_Mutation SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . UNC80 NM_032504 exon16 c.G2732T p.R911L TCACACGCTGCGC . 209.0 67.0 181.0 0.0 . 90 USP1 7398 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 62916161 62916161 + Missense_Mutation SNP A A C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . USP1 NM_001017415 exon9 c.A1867C p.K623Q ATAGGTAAGCCAG . 113.0 38.0 114.0 0.0 . 659 ZC3HAV1 56829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 138761070 138761070 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ZC3HAV1 NM_024625 exon6 c.G1659A p.E553E GATCGTCTCCATG . 95.0 34.0 90.0 0.0 . 91 ZER1 10444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 131515868 131515868 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ZER1 NM_006336 exon4 c.G321A p.E107E GTACAGCTCCACC . 36.0 10.0 40.0 0.0 . 91 ZFYVE27 118813 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 99498236 99498236 + Missense_Mutation SNP T T C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ZFYVE27 NM_001002261 exon1 c.T2C p.M1T ACAGGATGCAGAC . 42.0 18.0 43.0 0.0 . 91 ZNF607 84775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 38189778 38189778 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ZNF607 NM_032689 exon5 c.G1254A p.E418E GGGTTTCTCACCG . 70.0 26.0 67.0 0.0 . 90