Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCB11	8647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169791714	169791714	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ABCB11	NM_003742	exon23	c.C3036T	p.L1012L	GAAATGGAGCCCC	.	165.0	16.0	174.0	0.0	.	139
ADNP2	22850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	77895740	77895740	+	Missense_Mutation	SNP	A	A	T	rs113879497	byfrequency;alternate_allele	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ADNP2	NM_014913	exon4	c.A2444T	p.N815I	ATGCCAATGGCAA	.	94.0	16.0	92.0	0.0	A|0.999;G|0.001	140
AK8	158067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	135698618	135698618	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	AK8	NM_152572	exon9	c.T863A	p.L288Q	TGGGCCAGGAGGG	.	121.0	11.0	140.0	0.0	.	90
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4737905	4737905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	AKAP3	NM_006422	exon4	c.G163A	p.E55K	GGAACTCTGCTGT	.	181.0	37.0	191.0	0.0	.	292
APEH	327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49720037	49720037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	APEH	NM_001640	exon19	c.T1751C	p.M584T	CCCTTATGGGTGG	.	194.0	35.0	223.0	0.0	.	91
ARHGAP5	394	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	32563379	32563379	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ARHGAP5	NM_001173	exon2	c.T3504A	p.Y1168X	ATACTATAGAAGA	.	141.0	11.0	163.0	0.0	.	94
ARHGEF15	22899	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	8216404	8216404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ARHGEF15	NM_025014	exon3	c.A766G	p.I256V	CCAAGCATCGGTC	.	101.0	13.0	85.0	1.0	.	230
ASNSD1	54529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190531503	190531503	+	Silent	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ASNSD1	NM_019048	exon4	c.G645T	p.L215L	TAGCCTGAGTCAA	.	57.0	7.0	46.0	0.0	.	93
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28846411	28846411	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ATXN2L	NM_148414	exon19	c.A2466G	p.P822P	CAACCCACGCATG	.	168.0	22.0	200.0	0.0	.	92
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52441262	52441262	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	BAP1	NM_004656	exon7	c.T508G	p.F170V	TGACAAAGTGGAA	.	148.0	23.0	160.0	0.0	.	1032
BMP2K	55589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79808426	79808426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	BMP2K	NM_198892	exon15	c.A2050G	p.I684V	CCTTTCATTTCTC	.	101.0	12.0	97.0	0.0	.	383
C11orf95	65998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	63531074	63531074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001144936	exon5	c.A1853G	p.K618R	TGGCGCTTGATGG	.	46.0	6.0	75.0	0.0	.	.
C1orf146	388649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92711222	92711222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	C1orf146	NM_001012425	exon6	c.C534A	p.N178K	AGTTAACCCAAAT	.	153.0	28.0	176.0	0.0	.	91
C6orf15	29113	broad.mit.edu;ucsc.edu	37	6	31079842	31079842	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	C6orf15	NM_014070	exon2	c.G294A	p.W98X	TGGAGGCCACCTC	.	173.0	31.0	166.0	1.0	.	90
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2614096	2614096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CACNA1C	NM_001129831	exon8	c.T1202C	p.L401P	TGGTTCTCGGTGT	.	156.0	17.0	176.0	0.0	.	34
CAMP	820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48266103	48266103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CAMP	NM_004345	exon3	c.G329A	p.R110Q	TGAAGCGGTGTAT	.	187.0	27.0	231.0	0.0	.	91
CAMTA2	23125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4876952	4876952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CAMTA2	NM_001171167	exon13	c.G2198A	p.R733Q	ATGCCCCGGAAGG	.	90.0	11.0	105.0	0.0	.	91
CCDC147	159686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106166547	106166547	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CCDC147	NM_001008723	exon15	c.T2252G	p.L751R	TGCTCCTCCAGGT	.	121.0	15.0	89.0	0.0	.	71
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu	37	13	103396874	103396874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001146197	exon4	c.A6173T	p.Y2058F	ATCATGTATCCAG	.	80.0	4.0	83.0	0.0	.	.
CCL13	6357	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	32685070	32685070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CCL13	NM_005408	exon3	c.A217G	p.I73V	AAGGAGATCTGTG	.	146.0	13.0	104.0	0.0	.	90
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167550283	167550283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CCR6	NM_004367	exon3	c.T565C	p.Y189H	CAAAAATACAACA	.	215.0	37.0	212.0	0.0	.	227
CD70	970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6586092	6586092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CD70	NM_001252	exon3	c.C521A	p.T174K	AAAAGTGTCCCAG	.	102.0	16.0	93.0	0.0	.	227
CDH11	1009	broad.mit.edu;bcgsc.ca	37	16	64981643	64981643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CDH11	NM_001797	exon13	c.G2254A	p.A752T	ACCCGGCCACTGA	.	131.0	8.0	160.0	1.0	.	852
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	64981642	64981642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CDH11	NM_001797	exon13	c.C2255A	p.A752D	GACCCGGCCACTG	.	130.0	8.0	161.0	0.0	.	852
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123210343	123210343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CDK5RAP2	NM_018249	exon22	c.A2855G	p.Y952C	AGACGATACATAT	.	189.0	24.0	203.0	0.0	.	229
CELSR1	9620	ucsc.edu;mdanderson.org	37	22	46787590	46787590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CELSR1	NM_014246	exon15	c.G6088A	p.G2030S	GGCGGCCGATGAC	.	14.0	4.0	14.0	0.0	.	525
CHMP2A	27243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	59063031	59063031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CHMP2A	NM_198426	exon6	c.C654A	p.N218K	CCGCAGGTTCTTA	.	69.0	5.0	76.0	0.0	.	90
CHSY3	337876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	129520025	129520025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CHSY3	NM_175856	exon3	c.A1190G	p.K397R	CCAACAAAAGGCC	.	195.0	30.0	143.0	1.0	.	25
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42798805	42798805	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CIC	NM_015125	exon19	c.A4377G	p.P1459P	GGTGCCATACTCC	.	114.0	18.0	148.0	0.0	.	591
CISH	1154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	50645332	50645332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CISH	NM_013324	exon4	c.G534T	p.Q178H	ATAGTGCTGCACA	.	101.0	7.0	122.0	0.0	.	710
CLDN1	9076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190030766	190030766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CLDN1	NM_021101	exon2	c.A283G	p.I95V	CAAAGATTGCTAT	.	191.0	17.0	195.0	0.0	.	91
CNOT4	4850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	135122994	135122994	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CNOT4	NM_001190850	exon2	c.86delT	p.F29fs	CAAGGGAAAAAGT	.	225.0	35.0	249.0	0.0	.	90
COX6A1	1337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120878337	120878337	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	COX6A1	NM_004373	exon3	c.A327G	p.E109E	AGATGAATAAAGA	.	221.0	28.0	252.0	0.0	.	90
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113348909	113348909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CSMD3	NM_198123	exon44	c.G6991C	p.E2331Q	TTGGTTCTGTTTG	.	98.0	22.0	85.0	0.0	.	1132
CSRP3	8048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	19206570	19206570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CSRP3	NM_003476	exon6	c.G437A	p.R146H	GCACAGCGGAAAC	.	152.0	17.0	160.0	0.0	.	90
CSTB	1476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45194153	45194153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CSTB	NM_000100	exon3	c.A227G	p.E76G	TTGTTTTCATGAG	.	341.0	26.0	335.0	0.0	.	90
CT62	196993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	71404534	71404534	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001102658	exon3	c.A88T	p.S30C	AATGGCTGAATGT	.	102.0	12.0	110.0	0.0	.	.
CYBRD1	79901	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	172411309	172411309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	CYBRD1	NM_024843	exon4	c.A833G	p.D278G	CTCTGGATGAGGC	.	202.0	27.0	213.0	1.0	.	90
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	70679601	70679601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DDX50	NM_024045	exon8	c.A1103T	p.Q368L	CCATCCAGTGTCA	.	219.0	20.0	282.0	0.0	.	91
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	65994749	65994749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DENND4A	NM_001144823	exon17	c.G2324T	p.C775F	GGGAGACAAATAA	.	190.0	9.0	189.0	0.0	.	229
DIDO1	11083	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61511798	61511798	+	Missense_Mutation	SNP	A	A	C	rs147241583	byfrequency;alternate_allele	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DIDO1	NM_001193369	exon16	c.T5510G	p.V1837G	GGTGCCACTCCTC	.	154.0	16.0	172.0	1.0	A|0.999;G|0.001	96
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61511821	61511821	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DIDO1	NM_001193369	exon16	c.T5487C	p.S1829S	AAGGTAAGAGGGT	.	129.0	14.0	156.0	0.0	.	96
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	84921530	84921530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	DNAH6	NM_001370	exon46	c.G7450A	p.E2484K	TTTCATGAAGACC	.	158.0	13.0	152.0	0.0	.	69
EGFR	1956	broad.mit.edu;bcgsc.ca	37	7	55224279	55224298	+	Frame_Shift_Del	DEL	ACGAATATTAAACACTTCAA	ACGAATATTAAACACTTCAA	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	ACGAATATTAAACACTTCAA	ACGAATATTAAACACTTCAA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	EGFR	NM_201283	exon9	c.1060_1079del	p.354_360del	AATGCTACGAATA	.	147.0	8.0	142.0	0.0	.	44910
EPHB2	2048	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23233358	23233358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	EPHB2	NM_004442	exon11	c.G2047A	p.V683I	CCCAACGTCATCC	.	176.0	23.0	147.0	1.0	.	1381
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184294923	184294923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	EPHB3	NM_004443	exon5	c.C1306A	p.P436T	AAGAGCCCTCTGC	.	60.0	7.0	68.0	0.0	.	1455
ERAP2	64167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96215831	96215831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ERAP2	NM_001130140	exon2	c.A442G	p.I148V	GAACAAATTGCAC	.	209.0	24.0	205.0	0.0	.	68
FAM149A	25854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	187073131	187073131	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FAM149A	NM_001006655	exon3	c.A18G	p.K6K	AGGGAAAGTGAAC	.	252.0	11.0	261.0	0.0	.	90
FAM188A	80013	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	15876612	15876612	+	Missense_Mutation	SNP	T	T	C	rs187883529		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FAM188A	NM_024948	exon7	c.A580G	p.I194V	TTTCAATGCCCTA	.	55.0	5.0	51.0	0.0	T|0.999;C|0.001	228
FARS2	10667	hgsc.bcm.edu;bcgsc.ca	37	6	5369076	5369076	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FARS2	NM_006567	exon2	c.G273A	p.E91E	CAAGGAGAGGGTG	.	275.0	11.0	276.0	0.0	.	90
FASTKD1	79675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170428398	170428398	+	Missense_Mutation	SNP	C	C	T	rs150915965	byfrequency	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FASTKD1	NM_024622	exon2	c.G142A	p.D48N	CCTCATCTGTACA	.	125.0	24.0	132.0	0.0	C|1.000;T|0.000	119
FBXO31	79791	broad.mit.edu;bcgsc.ca	37	16	87376465	87376487	+	Frame_Shift_Del	DEL	GCCGGCTGGTGGGCTCACCTCCT	GCCGGCTGGTGGGCTCACCTCCT	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	GCCGGCTGGTGGGCTCACCTCCT	GCCGGCTGGTGGGCTCACCTCCT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FBXO31	NM_024735	exon5	c.728_732del	p.243_244del	CACAGGGCCGGCT	.	132.0	8.0	178.0	0.0	.	226
FER1L5	90342	hgsc.bcm.edu;mdanderson.org	37	2	97312182	97312182	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FER1L5	NM_001113382	exon2	c.T130A	p.W44R	CCCGTGTGGAATG	.	273.0	14.0	325.0	0.0	.	23
FLG	2312	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152281931	152281931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	FLG	NM_002016	exon3	c.G5431T	p.D1811Y	TGGTGTCCTGACC	.	466.0	65.0	384.0	1.0	.	106
GBP2	2634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89578243	89578243	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	GBP2	NM_004120	exon8	c.T1274A	p.F425Y	TTAGAAAATGTTC	.	193.0	25.0	233.0	0.0	.	91
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	154311099	154311099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	GEMIN5	NM_015465	exon5	c.G700A	p.A234T	CTGGAGCTTGTGC	.	140.0	27.0	119.0	0.0	.	228
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18688120	18688120	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HDAC9	NM_178425	exon10	c.G1281A	p.L427L	TCCCTTGGCAACA	.	65.0	9.0	63.0	0.0	.	227
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91784929	91784929	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HFM1	NM_001017975	exon24	c.A2601G	p.L867L	GCATCCTAGTTGA	.	88.0	14.0	111.0	0.0	.	112
HSD17B7	51478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162760596	162760596	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HSD17B7	NM_016371	exon1	c.A6G	p.R2R	GATGCGAAAGGTG	.	671.0	86.0	547.0	0.0	.	91
HSPA9	3313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137893621	137893621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HSPA9	NM_004134	exon13	c.A1570G	p.I524V	CATCAATGTCAAA	.	211.0	34.0	224.0	0.0	.	226
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3240242	3240242	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	HTT	NM_002111	exon65	c.T8960A	p.F2987Y	ACGACTTCTTCCC	.	197.0	18.0	202.0	0.0	.	281
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	133799610	133799610	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	IGSF9B	NM_014987	exon12	c.G1587A	p.W529X	TGGTTCCCAGGAC	.	133.0	14.0	154.0	0.0	.	68
IQSEC3	440073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	266301	266301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	IQSEC3	NM_001170738	exon6	c.T2264C	p.I755T	GGCTCATTGAGGC	.	315.0	45.0	385.0	0.0	.	560
ITGAE	3682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3680880	3680880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ITGAE	NM_002208	exon2	c.G109A	p.V37M	TGAGCACGAAAGG	.	147.0	20.0	141.0	1.0	.	161
KBTBD12	166348	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	127642469	127642469	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KBTBD12	NM_207335	exon1	c.T565A	p.S189T	AACATATCCAGAG	.	105.0	5.0	111.0	0.0	.	23
KCNH6	81033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61613399	61613399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KCNH6	NM_030779	exon6	c.G1471A	p.V491I	GAGAAGGTCTTCT	.	145.0	16.0	151.0	0.0	.	91
KDM8	79831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27232040	27232040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001145348	exon8	c.T1354C	p.W452R	AGCTTCTGGTGGT	.	207.0	23.0	192.0	0.0	.	.
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10600002	10600002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KEAP1	NM_012289	exon5	c.A1574G	p.Y525C	CCATCATAGCCCC	.	152.0	9.0	197.0	0.0	.	637
KIAA0141	9812	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	141314143	141314143	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KIAA0141	NM_001142603	exon10	c.A1141T	p.N381Y	GCAGCCAACAATG	.	145.0	11.0	164.0	0.0	.	91
KIAA1210	57481	ucsc.edu;bcgsc.ca	37	X	118230575	118230575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KIAA1210	NM_020721	exon8	c.C1148T	p.T383I	AGCTGGGTGCTAC	.	63.0	18.0	74.0	2.0	.	67
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	138629875	138629875	+	Splice_Site	SNP	G	G	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KIAA1244	NM_020340	exon24	c.3974-1G>C	.	CCCTTAGGAAAAG	.	149.0	9.0	161.0	0.0	.	228
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	51901391	51901391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KIF2B	NM_032559	exon1	c.G997A	p.A333T	CTGGTGGCACAGG	.	122.0	18.0	117.0	0.0	.	98
KRTAP13-3	337960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31797785	31797785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	KRTAP13-3	NM_181622	exon1	c.C446T	p.P149L	TAGATTGGATGGC	.	72.0	7.0	103.0	0.0	.	92
LEMD3	23592	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	65633985	65633985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	LEMD3	NM_014319	exon8	c.A2093G	p.H698R	TTCCACATGTACG	.	131.0	8.0	113.0	0.0	.	516
LGI3	203190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22006415	22006415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	LGI3	NM_139278	exon8	c.G905A	p.G302D	TAAGAGCCGCCAA	.	158.0	29.0	228.0	0.0	.	91
LOC200772	0	bcgsc.ca;mdanderson.org	37	2	241898846	241898846	+	RNA	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	.	.	.	.	GCGGGGCGATGTG	.	196.0	30.0	294.0	1.0	.	.
LRRC15	131578	broad.mit.edu;mdanderson.org	37	3	194081707	194081707	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	LRRC15	NM_001135057	exon3	c.C84T	p.Y28Y	GCCATGGTAGGCC	.	35.0	7.0	35.0	0.0	.	71
MAGEA4	4103	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	151093077	151093077	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MAGEA4	NM_001011548	exon3	c.A941T	p.E314V	AGGAGGAAGAGGG	.	103.0	8.0	132.0	0.0	.	194
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23890789	23890789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_019066	exon1	c.G2101A	p.V701I	CTGCTACCGGGGG	.	76.0	21.0	100.0	0.0	.	.
MARCH11	441061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16067841	16067841	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001102562	exon4	c.T948G	p.N316K	GTGCAAATTCACA	.	75.0	8.0	69.0	0.0	.	.
MARK1	4139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	220826560	220826560	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MARK1	NM_018650	exon16	c.G1854A	p.Q618Q	TGAACAGCTCCGG	.	237.0	12.0	230.0	0.0	.	802
MAT1A	4143	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	82034339	82034339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MAT1A	NM_000429	exon8	c.C1022A	p.T341K	CGCTCTGTCTTCT	.	178.0	22.0	236.0	2.0	.	90
MERTK	10461	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	112686826	112686826	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MERTK	NM_006343	exon2	c.T191A	p.M64K	CCTTGATGTTTTC	.	353.0	39.0	346.0	1.0	.	1463
MIER1	57708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67436525	67436525	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MIER1	NM_001077700	exon9	c.T807C	p.P269P	GGACCCTGAGTAC	.	126.0	11.0	118.0	0.0	.	91
MINPP1	9562	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89312033	89312033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MINPP1	NM_004897	exon5	c.A1262G	p.H421R	TTTACCACTGTGA	.	173.0	7.0	196.0	0.0	.	227
MMP16	4325	hgsc.bcm.edu;broad.mit.edu	37	8	89180168	89180168	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MMP16	NM_005941	exon4	c.G439T	p.E147X	GAGTCTCAGGGTC	.	142.0	7.0	149.0	0.0	.	231
MOCOS	55034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	33778679	33778679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MOCOS	NM_017947	exon3	c.A259G	p.S87G	ATCAGCAGCAAGC	.	237.0	12.0	222.0	0.0	.	91
MSANTD3-TMEFF1	100526694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	103271393	103271393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001198812	exon3	c.T635C	p.I212T	CAGTAATAGCAAG	.	63.0	15.0	55.0	0.0	.	.
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	9059729	9059729	+	Silent	SNP	G	G	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MUC16	NM_024690	exon3	c.C27717G	p.S9239S	GACAGAGGAAGGA	.	281.0	26.0	367.0	0.0	.	566
MYH4	4622	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10356573	10356573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MYH4	NM_017533	exon24	c.C3007T	p.L1003F	CCTGGAGAGCCTT	.	271.0	45.0	241.0	1.0	.	102
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3155037	3155037	+	Silent	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	MYOM1	NM_003803	exon11	c.G1551A	p.K517K	CAAGCACTTCACA	.	72.0	9.0	78.0	0.0	.	94
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101726938	101726938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NALCN	NM_052867	exon36	c.C4030G	p.L1344V	GCAAGAGAAACAT	.	43.0	7.0	38.0	0.0	.	167
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101759941	101759941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NALCN	NM_052867	exon22	c.C2476A	p.L826I	CTCTGAGTTCCTC	.	140.0	22.0	133.0	0.0	.	167
NCOR1	9611	broad.mit.edu;bcgsc.ca	37	17	15942894	15942923	+	In_Frame_Del	DEL	CCTTCCTGATAATGTCTTCCAGCCCAAGAT	CCTTCCTGATAATGTCTTCCAGCCCAAGAT	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	CCTTCCTGATAATGTCTTCCAGCCCAAGAT	CCTTCCTGATAATGTCTTCCAGCCCAAGAT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NCOR1	NM_006311	exon44	c.6779_6808del	p.2260_2270del	TGAGAGCCTTCCT	.	185.0	9.0	194.0	0.0	.	229
NDUFV2	4729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	9119504	9119504	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NDUFV2	NM_021074	exon4	c.A216G	p.E72E	TCCAGAAGGCCAT	.	113.0	11.0	118.0	0.0	.	91
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20805310	20805310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NELL1	NM_006157	exon3	c.T269C	p.L90S	CCATTTTGGCCAC	.	92.0	19.0	115.0	0.0	.	155
NEMF	9147	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50251367	50251367	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NEMF	NM_004713	exon33	c.T3218G	p.V1073G	CTTTTTACATTCA	.	59.0	6.0	62.0	0.0	.	90
NKAIN2	154215	broad.mit.edu;bcgsc.ca	37	6	124979397	124979397	+	Silent	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NKAIN2	NM_001040214	exon4	c.A339T	p.P113P	TGGACCAGGATGT	.	239.0	11.0	264.0	1.0	.	23
NLRP12	91662	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	54310856	54310856	+	Silent	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NLRP12	NM_144687	exon4	c.G2136A	p.L712L	GTTTGGATTGGTG	.	133.0	6.0	158.0	0.0	.	211
NMNAT3	349565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	139292479	139292479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NMNAT3	NM_178177	exon4	c.G226A	p.G76S	CTGGGCCTTCCAT	.	209.0	22.0	253.0	0.0	.	90
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	50744637	50744637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NOD2	NM_022162	exon4	c.G815A	p.S272N	AGAAGAGCCCAGC	.	105.0	10.0	125.0	0.0	.	231
NPLOC4	55666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79589216	79589216	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NPLOC4	NM_017921	exon3	c.A185T	p.K62I	AGGGATTTGTTGG	.	89.0	9.0	93.0	0.0	.	24
NRP1	8829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	33515205	33515205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NRP1	NM_001024629	exon7	c.C994T	p.L332F	GCAGAAGGCCCAA	.	107.0	11.0	91.0	0.0	.	525
NUBPL	80224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	32031297	32031297	+	Silent	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NUBPL	NM_025152	exon2	c.C132T	p.T44T	TGAGACCCTAAAA	.	62.0	11.0	66.0	0.0	.	226
NUDT6	11162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123814211	123814211	+	Silent	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NUDT6	NM_007083	exon5	c.A723G	p.E241E	GCATTCTTCCTGG	.	124.0	6.0	140.0	0.0	.	90
NXF3	56000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102334164	102334164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	NXF3	NM_022052	exon16	c.G1363A	p.G455R	ACACCCCGTTGAC	.	275.0	87.0	270.0	0.0	.	205
OBSCN	84033	broad.mit.edu;bcgsc.ca	37	1	228559645	228559645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OBSCN	NM_001271223	exon105	c.T24037C	p.C8013R	GCCCCATGCCCTC	.	185.0	8.0	164.0	1.0	.	403
OR10T2	128360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158368778	158368778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR10T2	NM_001004475	exon1	c.C479A	p.A160D	TTGGTGGCCACCA	.	85.0	5.0	60.0	0.0	.	70
OR13J1	392309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	35869767	35869767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR13J1	NM_001004487	exon1	c.T632A	p.L211Q	AATGCCAGGGGTA	.	108.0	7.0	135.0	0.0	.	68
OR2M5	127059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248308834	248308834	+	Missense_Mutation	SNP	C	C	G	rs150844237	alternate_allele	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR2M5	NM_001004690	exon1	c.C385G	p.P129A	TGCCACCCTCTAA	.	508.0	26.0	400.0	0.0	C|1.000;T|0.000	71
OR2T11	127077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248789769	248789769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR2T11	NM_001001964	exon1	c.A661G	p.T221A	GGATGGTTAACAA	.	224.0	18.0	198.0	0.0	.	69
OR7D4	125958	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9324952	9324952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	OR7D4	NM_001005191	exon1	c.G562T	p.A188S	AGCAGGCCACCTT	.	206.0	50.0	275.0	1.0	.	71
ORM2	5005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117093116	117093116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ORM2	NM_000608	exon3	c.G302A	p.R101Q	TCCAGCGGGAGAA	.	167.0	21.0	143.0	0.0	.	90
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	80746178	80746178	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_173591	exon44	c.T5342A	p.F1781Y	ACAAGTTTGATAT	.	96.0	8.0	80.0	0.0	.	.
PALMD	54873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100154912	100154912	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PALMD	NM_017734	exon7	c.A1096C	p.K366Q	TCTCCAAAGCCAA	.	126.0	13.0	159.0	1.0	.	71
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	67801110	67801110	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PCDH9	NM_203487	exon2	c.T1463A	p.L488X	GTTGTTAAGTATA	.	202.0	33.0	170.0	0.0	.	96
PCDHA4	56144	broad.mit.edu;bcgsc.ca	37	5	140187738	140187738	+	Silent	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PCDHA4	NM_031500	exon1	c.C966A	p.G322G	AGAGGGCATTGAT	.	68.0	6.0	69.0	0.0	.	96
PCDHA5	56143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140203713	140203713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PCDHA5	NM_031501	exon1	c.G2353A	p.V785M	GACAACGTGAGTT	.	132.0	11.0	161.0	0.0	.	137
PCDHB5	26167	hgsc.bcm.edu;mdanderson.org	37	5	140516630	140516630	+	Silent	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PCDHB5	NM_015669	exon1	c.G1614A	p.P538P	CTCCCCGGCGCTG	.	17.0	6.0	15.0	0.0	.	95
PDGFA	5154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	540840	540840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PDGFA	NM_002607	exon5	c.A493G	p.K165E	CTTCTTTTAATTT	.	192.0	28.0	180.0	0.0	.	454
PIP	5304	broad.mit.edu;bcgsc.ca	37	7	142836680	142836680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PIP	NM_002652	exon4	c.T386C	p.V129A	CTGCTGTAATCCC	.	128.0	6.0	125.0	0.0	.	91
PLK1S1	55857	hgsc.bcm.edu;broad.mit.edu	37	20	21213370	21213370	+	Splice_Site	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	NM_001163023	exon9	c.1384-2A>T	.	TATCACAGGTTTG	.	132.0	6.0	113.0	0.0	.	.
PMPCA	23203	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	139313081	139313081	+	Silent	SNP	C	C	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PMPCA	NM_015160	exon9	c.C1065G	p.P355P	TGGGCCCGGCAAG	.	137.0	9.0	139.0	0.0	.	90
POGK	57645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166818288	166818288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	POGK	NM_017542	exon5	c.A472G	p.I158V	CGGGATATCACAG	.	340.0	63.0	304.0	0.0	.	91
POTEC	388468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	14537808	14537808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	POTEC	NM_001137671	exon3	c.A802G	p.K268E	TGTTTTTTGATTC	.	348.0	49.0	351.0	0.0	.	3
PP14571	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	241390200	241390200	+	RNA	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	.	.	.	.	GCCTTTATTCAGT	.	285.0	25.0	357.0	0.0	.	.
PPP1R12A	4659	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80199549	80199549	+	Splice_Site	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PPP1R12A	NM_001143885	exon16	c.1824-1G>A	.	GAGGTACTATAGC	.	178.0	32.0	150.0	1.0	.	273
PRR5L	79899	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	36459019	36459019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PRR5L	NM_024841	exon7	c.C437A	p.P146Q	TTTATCCAGTTCA	.	124.0	5.0	114.0	0.0	.	91
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	198682109	198682109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	PTPRC	NM_002838	exon12	c.G1199A	p.C400Y	TTTTTTGTAGAAG	.	140.0	9.0	110.0	0.0	.	295
RALGAPA2	57186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20582430	20582430	+	Missense_Mutation	SNP	C	C	T	rs147045442		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RALGAPA2	NM_020343	exon16	c.G2099A	p.R700Q	TGGCTCCGCCAGC	.	67.0	13.0	76.0	0.0	C|0.999;T|0.000	24
RASD2	23551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35942929	35942929	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RASD2	NM_014310	exon2	c.C73G	p.L25V	GTGGTGCTGGGTG	.	129.0	15.0	150.0	0.0	.	659
RIPK1	8737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	3106115	3106115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RIPK1	NM_003804	exon8	c.A1406G	p.Y469C	GATTATATAGCTC	.	230.0	10.0	212.0	0.0	.	1044
RNF169	254225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	74546763	74546763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RNF169	NM_001098638	exon6	c.A1115G	p.N372S	AGAGCAATGACAG	.	155.0	12.0	183.0	0.0	.	69
RYR3	6263	broad.mit.edu;bcgsc.ca	37	15	34080629	34080629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	RYR3	NM_001243996	exon67	c.C9800A	p.P3267H	TCTACCCCATGCT	.	126.0	8.0	134.0	1.0	.	520
SCAF1	58506	hgsc.bcm.edu;mdanderson.org	37	19	50156751	50156751	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SCAF1	NM_021228	exon7	c.A3105G	p.E1035E	AGAGGAAGAGGAG	.	19.0	6.0	23.0	0.0	.	68
SCN1A	6323	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166852533	166852533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SCN1A	NM_001165963	exon24	c.C4571T	p.P1524L	GGTCGAGGTATAG	.	50.0	5.0	50.0	1.0	.	147
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166852534	166852534	+	Missense_Mutation	SNP	G	G	T	rs143088184		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SCN1A	NM_001165963	exon24	c.C4570A	p.P1524T	GTCGAGGTATAGG	.	50.0	5.0	50.0	0.0	G|1.000;T|0.000	147
SERPINB3	6317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61325772	61325772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SERPINB3	NM_006919	exon5	c.C444A	p.N148K	CCAGGAGTTAATC	.	103.0	12.0	105.0	0.0	.	228
SIAE	54414	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	124517357	124517357	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SIAE	NM_170601	exon7	c.T870C	p.N290N	TGTGCAATTGTAC	.	116.0	17.0	100.0	0.0	.	90
SIM2	6493	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38117042	38117042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SIM2	NM_005069	exon10	c.T1181C	p.F394S	GCTCGTTCCAAAT	.	82.0	8.0	80.0	2.0	.	90
SLC5A10	125206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18872410	18872410	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SLC5A10	NM_001042450	exon6	c.T499G	p.W167G	CTGGGCTGGAACT	.	156.0	11.0	209.0	0.0	.	91
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	118548101	118548101	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPAG17	NM_206996	exon32	c.A4712T	p.Y1571F	ATGATGTACCTGC	.	103.0	8.0	104.0	0.0	.	158
SPAG8	26206	bcgsc.ca;mdanderson.org	37	9	35810501	35810501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPAG8	NM_001039592	exon5	c.G1135A	p.E379K	CAGACTCAACCTC	.	146.0	13.0	190.0	1.0	.	91
SPAG9	9043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	49048126	49048126	+	Silent	SNP	C	C	A	rs112947211	bycluster;byfrequency;alternate_allele	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPAG9	NM_001130528	exon29	c.G3792T	p.T1264T	CAAGGGCGTCTGA	.	143.0	17.0	198.0	0.0	C|0.999;T|0.001	659
SPATA4	132851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177113883	177113883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPATA4	NM_144644	exon4	c.T583G	p.S195A	ATTCTGATAACCT	.	83.0	9.0	100.0	0.0	.	90
SPRR2B	6701	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153043186	153043186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SPRR2B	NM_001017418	exon3	c.C130T	p.P44S	GGCAGGGCTGTGG	.	207.0	24.0	216.0	0.0	.	68
SQLE	6713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	126030343	126030343	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SQLE	NM_003129	exon8	c.T1247G	p.L416R	ATCCACTTACTGG	.	49.0	7.0	40.0	0.0	.	523
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152638095	152638095	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SYNE1	NM_182961	exon87	c.T16599C	p.N5533N	CATTTCATTGTAT	.	63.0	7.0	56.0	0.0	.	607
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119947795	119947795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	SYNPO2	NM_001128934	exon3	c.A271G	p.I91V	AGTGGAATAAGTG	.	87.0	9.0	95.0	0.0	.	92
TAF1D	79101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93472409	93472409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	TAF1D	NM_024116	exon2	c.A62G	p.N21S	CTTCGATTTGCAA	.	80.0	15.0	73.0	0.0	.	90
TAGAP	117289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159457832	159457832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	TAGAP	NM_054114	exon10	c.G1223A	p.R408Q	CCTACCCGGGGCA	.	146.0	17.0	157.0	0.0	.	91
THBS3	7059	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155168361	155168361	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	THBS3	NM_007112	exon17	c.A1913T	p.N638I	GGGCAGTTGTCCT	.	266.0	20.0	303.0	1.0	.	222
THSD4	79875	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	71548960	71548960	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	THSD4	NM_024817	exon5	c.A921G	p.P307P	ATGTCCAGAAAGC	.	106.0	11.0	115.0	0.0	.	92
TXK	7294	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48116411	48116411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	TXK	NM_003328	exon2	c.A25G	p.I9V	ACTGGATGGTGTT	.	106.0	20.0	105.0	1.0	.	521
UBE2K	3093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39780009	39780009	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	UBE2K	NM_005339	exon7	c.A558G	p.K186K	TTCAAAATCATGG	.	86.0	6.0	63.0	0.0	.	23
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43318859	43318859	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	UBR1	NM_174916	exon23	c.A2435C	p.K812T	CCTGGTTTCCTAA	.	52.0	12.0	47.0	0.0	.	91
UCP3	7352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73717271	73717271	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	UCP3	NM_003356	exon3	c.A280T	p.I94F	TGCGGATGGAGGC	.	89.0	9.0	115.0	1.0	.	91
USP24	23358	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	55624627	55624627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	USP24	NM_015306	exon10	c.A1151G	p.D384G	AGGTCATCCACAA	.	251.0	14.0	254.0	1.0	.	521
WDR33	55339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128522413	128522413	+	Silent	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	WDR33	NM_001006623	exon6	c.T615C	p.I205I	CTCTCTAATCGCC	.	239.0	13.0	194.0	1.0	.	90
WNK4	65266	broad.mit.edu;bcgsc.ca	37	17	40945608	40945615	+	In_Frame_Del	DEL	AGGTATAT	AGGTATAT	-	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	AGGTATAT	AGGTATAT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	WNK4	NM_032387	exon12	c.2158_2163del	p.720_721del	CTCGCAAGGTATA	.	159.0	9.0	165.0	0.0	.	336
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207175044	207175044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZDBF2	NM_020923	exon5	c.G5792T	p.G1931V	AAAAGGGGCGTGT	.	251.0	31.0	217.0	0.0	.	3
ZFP82	284406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36884090	36884090	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZFP82	NM_133466	exon5	c.T1152G	p.H384Q	TCTGTGATGGAGA	.	114.0	11.0	101.0	0.0	.	91
ZMYND12	84217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42921631	42921631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZMYND12	NM_032257	exon1	c.G38A	p.R13H	AGTCTGCGCCCCT	.	56.0	10.0	52.0	0.0	.	91
ZNF254	9534	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	24309164	24309164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF254	NM_203282	exon4	c.A362T	p.Q121L	ATTTACAGTTAAG	.	120.0	6.0	91.0	0.0	.	90
ZNF33A	7581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	38345268	38345268	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF33A	NM_006954	exon5	c.A2216T	p.H739L	CTCAACATCAGAG	.	123.0	21.0	131.0	0.0	.	93
ZNF485	220992	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	44112662	44112662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF485	NM_145312	exon5	c.T1171C	p.F391L	AAAGCCTTTCGGC	.	90.0	7.0	91.0	0.0	.	90
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71629093	71629093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF638	NM_014497	exon16	c.A2705G	p.E902G	AAACAGAAGAAAT	.	49.0	9.0	62.0	0.0	.	94
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31088438	31088438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF646	NM_014699	exon2	c.A793G	p.I265V	CTGGGCATCTACC	.	151.0	16.0	179.0	0.0	.	153
ZNF716	441234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	57528611	57528611	+	Nonsense_Mutation	SNP	T	T	A	rs202240678	byfrequency	TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	ZNF716	NM_001159279	exon4	c.T444A	p.C148X	CCAATGTTTGTCA	.	159.0	21.0	154.0	0.0	T|0.995;A|0.005	24
LRRC41	10489	broad.mit.edu;bcgsc.ca	37	1	46744688	46744689	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-ED-A4XI-01A-11D-A25V-10	TCGA-ED-A4XI-10A-01D-A25V-10	GC	GC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	670f971f-a525-4ef8-91ba-610cfbaeb914	72f5179f-1c32-4e78-8f77-027a5400e7fd	.	.	.	.	.	p.A763N	CCAAAGGCTCCAC	.	75.0	6.0	75.0	0.0	.	.