Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	18777646	18777646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ADAMTSL1	NM_001040272	exon19	c.G3419A	p.G1140D	TGTCTGGCTTCAG	.	28.0	14.0	39.0	0.0	.	230
AMER1	139285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63412194	63412194	+	Silent	SNP	A	A	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	.	NM_152424	exon2	c.T973C	p.L325L	CTGTCAATGAATC	.	87.0	9.0	97.0	0.0	.	.
AMH	268	hgsc.bcm.edu;mdanderson.org	37	19	2249687	2249687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	AMH	NM_000479	exon1	c.G356T	p.G119V	GGCTGGGGGCCTG	.	41.0	16.0	32.0	0.0	.	130
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21233705	21233705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	APOB	NM_000384	exon26	c.G6035A	p.R2012Q	AGAGTTCGTCCAG	.	194.0	57.0	217.0	0.0	.	175
ARCN1	372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118452209	118452209	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ARCN1	NM_001655	exon2	c.G252A	p.R84R	CCTAAGGCTCTTC	.	56.0	25.0	70.0	0.0	.	90
ARHGAP31	57514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119133178	119133178	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ARHGAP31	NM_020754	exon12	c.A2402C	p.K801T	TTTCAAAGGGCGG	.	35.0	12.0	46.0	0.0	.	92
AURKA	6790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	54961384	54961384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	AURKA	NM_198437	exon3	c.G248A	p.S83N	GGTACACTGGTTG	.	200.0	77.0	227.0	0.0	.	1601
C11orf54	28970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	93494680	93494680	+	Splice_Site	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	C11orf54	NM_014039	exon8	c.625-1G>A	.	ATCTTAGGGGTTT	.	140.0	40.0	129.0	0.0	.	90
C16orf70	80262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67159932	67159932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	C16orf70	NM_025187	exon3	c.A218G	p.N73S	CTTTCAATCAGAG	.	30.0	9.0	36.0	0.0	.	70
C17orf47	284083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56620718	56620718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	C17orf47	NM_001038704	exon1	c.T830C	p.V277A	TTAAGGACAGAGA	.	130.0	50.0	107.0	0.0	.	135
C9orf135	138255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	72459518	72459518	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	C9orf135	NM_001010940	exon2	c.C238T	p.R80X	TATCGGCGACTGG	.	43.0	13.0	76.0	0.0	.	69
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181701775	181701775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CACNA1E	NM_001205293	exon20	c.C2553A	p.S851R	CATCAGCCGTGGG	.	98.0	18.0	61.0	0.0	.	95
CASP4	837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	104819259	104819259	+	Splice_Site	SNP	C	C	A	rs144482787	alternate_allele	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CASP4	NM_033306	exon7	c.757+1G>T	.	TACATACGTGGCG	.	46.0	15.0	70.0	0.0	C|1.000;T|0.000	660
CDKN2A	1029	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21971111	21971111	+	Missense_Mutation	SNP	G	G	C	rs121913385	alternate_allele	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	CDKN2A,NS,carcinoma,+1	CDKN2A	NM_058195	exon2	c.C290G	p.A97G	CGTCGTGCACGGG	.	35.0	17.0	71.0	0.0	.	23992
CFL1	1072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65623665	65623665	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CFL1	NM_005507	exon2	c.A52T	p.M18L	CCTTCATGTCGTT	.	62.0	23.0	79.0	0.0	.	90
CHD7	55636	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61693771	61693771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CHD7	NM_017780	exon3	c.C1878A	p.N626K	AGATAACCAAGAA	.	24.0	5.0	30.0	0.0	.	141
COL4A2	1284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111141810	111141810	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	COL4A2	NM_001846	exon35	c.G3226C	p.G1076R	GCCCCAGGGAGAG	.	66.0	15.0	107.0	0.0	.	95
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	71003965	71003965	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	COL9A1	NM_001851	exon5	c.601delA	p.I201fs	ATTCAATCCTGTT	.	114.0	45.0	121.0	0.0	.	94
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	211455540	211455540	+	Missense_Mutation	SNP	G	G	A	rs148654695		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CPS1	NM_001122633	exon10	c.G875A	p.R292H	GTGATCGCAAGGA	.	40.0	16.0	61.0	0.0	G|0.999;A|0.000	162
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	G	rs121913400	bycluster	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.C98G	p.S33C	TGGACTCTGGAAT	.	149.0	16.0	215.0	1.0	.	24361
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225376243	225376243	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	CUL3	NM_001257198	exon6	c.A729G	p.V243V	AGCTTCTACTTTC	.	154.0	47.0	202.0	0.0	.	229
DDO	8528	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110714035	110714035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	DDO	NM_003649	exon5	c.G1053T	p.R351S	CACCAGCCTGGCG	.	30.0	14.0	46.0	1.0	.	155
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	31496267	31496267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	DMD	NM_004006	exon59	c.G8893T	p.D2965Y	GGAGATCGCCCAC	.	104.0	30.0	111.0	0.0	.	265
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196891574	196891574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	DNAH7	NM_018897	exon7	c.C577A	p.P193T	GTTGTGGAACTAA	.	89.0	26.0	105.0	0.0	.	102
ENTPD1	953	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	97599472	97599472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ENTPD1	NM_001164178	exon3	c.T205C	p.S69P	GCGGGTTCTTCTC	.	170.0	51.0	227.0	2.0	.	93
FFAR4	338557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95326941	95326941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	.	NM_001195755	exon1	c.G464T	p.R155L	GGGCGCGGGCAGT	.	48.0	17.0	58.0	0.0	.	.
FGF14	2259	bcgsc.ca;mdanderson.org	37	13	102379114	102379114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	FGF14	NM_175929	exon4	c.A470C	p.N157T	TAATAATTTTCAA	.	88.0	32.0	136.0	0.0	.	586
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	86089754	86089754	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	FLRT2	NM_013231	exon2	c.G1896A	p.G632G	AAATGGGGGCATT	.	55.0	26.0	81.0	0.0	.	94
GPATCH8	23131	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42477055	42477055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	GPATCH8	NM_001002909	exon8	c.G2390T	p.R797L	GCTCTTCGCTGGC	.	99.0	30.0	113.0	1.0	.	94
GPHN	10243	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	67389470	67389470	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	GPHN	NM_001024218	exon7	c.G544T	p.E182X	CATGATGAACTTG	.	23.0	15.0	87.0	1.0	.	228
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185976272	185976272	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	HMCN1	NM_031935	exon30	c.G4488A	p.L1496L	ATTTTTGGGCGAT	.	172.0	139.0	119.0	0.0	.	113
IFI30	10437	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	18284657	18284657	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	IFI30	NM_006332	exon1	c.C6T	p.T2T	GATGACCCTGTCG	.	15.0	4.0	24.0	0.0	.	226
IFNA13	3447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21367937	21367937	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	IFNA13	NM_006900	exon1	c.T73G	p.C25G	GATCACAGCCCAG	.	86.0	11.0	120.0	0.0	.	23
INHA	3623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220439974	220439974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	INHA	NM_002191	exon2	c.G827T	p.W276L	TGGGCTGGGAACG	.	102.0	37.0	89.0	0.0	.	91
INSIG1	3638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155094008	155094008	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	INSIG1	NM_005542	exon4	c.C585T	p.A195A	AGCAGCCCTATCT	.	221.0	67.0	239.0	0.0	.	90
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	3599650	3599650	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	IRX1	NM_024337	exon2	c.C588A	p.R196R	AGCGCGCAGCAAG	.	68.0	31.0	60.0	0.0	.	228
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65306964	65306964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	JAK1	NM_002227	exon19	c.A2613C	p.E871D	GCGCTTTTCAAAA	.	129.0	45.0	145.0	0.0	.	3900
KAT2B	8850	hgsc.bcm.edu;broad.mit.edu	37	3	20181810	20181810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	KAT2B	NM_003884	exon13	c.G1958T	p.R653L	ATCCACGGATCCC	.	95.0	4.0	71.0	0.0	.	228
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210856666	210856666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	KCNH1	NM_172362	exon11	c.C2927A	p.P976Q	GACTGTGGCCTCG	.	130.0	15.0	85.0	0.0	.	94
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	443421	443421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	KDM5A	NM_001042603	exon11	c.C1476G	p.I492M	GTAGTTGATGGAA	.	86.0	39.0	148.0	0.0	.	227
KIAA1586	57691	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56918371	56918371	+	Silent	SNP	A	A	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	KIAA1586	NM_020931	exon4	c.A1074C	p.I358I	AACTATAGCAGAG	.	91.0	38.0	115.0	2.0	.	44
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50869602	50869602	+	Silent	SNP	A	A	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	LARP4	NM_052879	exon16	c.A2130G	p.R710R	GACTCGACGTAAT	.	91.0	20.0	141.0	0.0	.	91
LILRA2	11027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55086255	55086255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	LILRA2	NM_001130917	exon4	c.G410T	p.G137V	TAGGAGGGAACGT	.	66.0	18.0	53.0	0.0	.	91
LMTK2	22853	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	97833378	97833378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	LMTK2	NM_014916	exon13	c.G4363T	p.A1455S	CCACCGGCCCGGA	.	25.0	9.0	51.0	0.0	.	1381
LOXHD1	125336	ucsc.edu;bcgsc.ca	37	18	44143124	44143124	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	.	NM_144612	exon18	c.C2502A	p.V834V	CATGTAGACTCGG	.	29.0	4.0	60.0	0.0	.	.
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210561763	210561763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MAP2	NM_002374	exon9	c.C4510T	p.R1504W	GTTAAGCGGAAAA	.	81.0	29.0	99.0	0.0	.	591
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	90484380	90484380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MDN1	NM_014611	exon13	c.C1894T	p.R632W	GAAGCCGCACTCG	.	148.0	10.0	163.0	0.0	.	100
MYF5	4617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	81112792	81112792	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	MYF5	NM_005593	exon3	c.730delG	p.G244fs	ACTCCAGGGGCTT	.	75.0	22.0	77.0	0.0	.	91
NDUFS5	4725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39494585	39494585	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	NDUFS5	NM_001184979	exon2	c.C189T	p.F63F	TGATTTCGTAGAG	.	86.0	31.0	89.0	0.0	.	90
NHSL1	57224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138752106	138752106	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	NHSL1	NM_020464	exon5	c.G3388C	p.E1130Q	CACTCTCCATTTC	.	161.0	43.0	172.0	1.0	.	68
PARP1	142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226590006	226590006	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PARP1	NM_001618	exon2	c.G195A	p.R65R	AGGGTGCCGGATG	.	40.0	31.0	26.0	0.0	.	727
PGP	283871	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	2264015	2264015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PGP	NM_001042371	exon2	c.A680G	p.Q227R	TGGCGCTGGGCGG	.	32.0	11.0	50.0	1.0	.	23
PIK3CG	5294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	106545719	106545719	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PIK3CG	NM_002649	exon11	c.A3196T	p.K1066X	GCTAAAAAGTATT	.	123.0	37.0	160.0	0.0	.	1316
PRRG1	5638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	37285115	37285115	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PRRG1	NM_001173490	exon3	c.C33A	p.A11A	AAAAGCCAATTCC	.	354.0	130.0	566.0	1.0	.	194
PSMB10	5699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67968561	67968561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PSMB10	NM_002801	exon8	c.C724T	p.H242Y	CAAAGTGGTAGCG	.	53.0	22.0	62.0	0.0	.	90
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87683886	87683886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	PTPN13	NM_080683	exon24	c.C3560A	p.S1187Y	TGCCTTCTACTCC	.	48.0	24.0	82.0	0.0	.	230
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	36008806	36008806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	RALGAPA1	NM_194301	exon40	c.G6194A	p.S2065N	CTTTTGCTAGTTC	.	64.0	18.0	65.0	0.0	.	138
RNF43	54894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	56435197	56435197	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	RNF43	NM_017763	exon9	c.T1940A	p.L647H	GCAGAGAGGCTGG	.	82.0	7.0	89.0	0.0	.	92
SEC22A	26984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	122978413	122978413	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SEC22A	NM_012430	exon6	c.700delG	p.G234fs	TTCCTTGGAACAG	.	339.0	113.0	373.0	0.0	.	91
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	110384263	110384263	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SEC24B	NM_006323	exon2	c.C340T	p.Q114X	GGAGCACAGCAGT	.	37.0	21.0	88.0	0.0	.	137
SGK2	10110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42195738	42195738	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SGK2	NM_016276	exon2	c.G247C	p.G83R	AACCTGGGGCCTT	.	68.0	20.0	56.0	0.0	.	990
SLC26A11	284129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78196581	78196581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SLC26A11	NM_173626	exon4	c.C362T	p.A121V	AGCCCGCCTACGC	.	93.0	47.0	86.0	0.0	.	90
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	211749034	211749047	+	Frame_Shift_Del	DEL	AAAACGTCTTTAAT	AAAACGTCTTTAAT	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	AAAACGTCTTTAAT	AAAACGTCTTTAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SLC30A1	NM_021194	exon2	c.1207_1220del	p.403_407del	TTATGAAAAACGT	.	95.0	65.0	77.0	0.0	.	93
SLC7A7	9056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23242904	23242904	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SLC7A7	NM_001126105	exon11	c.A1451C	p.Q484P	AGGACCTGGAGGT	.	52.0	17.0	78.0	0.0	.	154
SLC9C1	285335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111981884	111981884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	.	NM_183061	exon10	c.C1084T	p.R362C	TCCAGCGCCAACT	.	198.0	69.0	206.0	0.0	.	.
SPAG1	6674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101237520	101237520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	SPAG1	NM_003114	exon14	c.C1808T	p.S603L	TGATCTCAAAACA	.	65.0	12.0	66.0	0.0	.	92
ST6GAL2	84620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	107460245	107460245	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ST6GAL2	NM_032528	exon2	c.C189A	p.G63G	TGCGGCGCCCATG	.	40.0	16.0	32.0	0.0	.	191
ST7L	54879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113098573	113098573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ST7L	NM_138729	exon12	c.C1313T	p.A438V	GCAATTGCTTCAC	.	63.0	20.0	55.0	0.0	.	90
TMEM44	93109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	194336377	194336377	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	TMEM44	NM_001166305	exon8	c.974delG	p.G325fs	GCAAATCCTAAGG	.	120.0	45.0	167.0	0.0	.	90
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	48.0	27.0	94.0	0.0	C|1.000;|0.000	70225
TPO	7173	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1440139	1440139	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	TPO	NM_175719	exon5	c.A465T	p.T155T	CATCACAGGAGCT	.	89.0	31.0	91.0	1.0	.	332
UGT2B28	54490	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70160294	70160294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	UGT2B28	NM_053039	exon6	c.C1357T	p.P453S	GATCAACCAGTAA	.	46.0	21.0	70.0	1.0	.	91
USP48	84196	broad.mit.edu;bcgsc.ca	37	1	22084268	22084268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	USP48	NM_001032730	exon2	c.G143A	p.C48Y	CCTTTGCAGTTTC	.	46.0	14.0	88.0	1.0	.	659
WDR27	253769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170033072	170033072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	WDR27	NM_182552	exon21	c.C2194T	p.R732W	CAGGCCGTGAGTG	.	54.0	13.0	51.0	1.0	.	69
WISP3	8838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	112375575	112375575	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	WISP3	NM_198239	exon1	c.C69A	p.L23L	GCTCCTCTTCTCC	.	75.0	13.0	62.0	0.0	.	90
ZNF195	7748	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3380429	3380429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ZNF195	NM_001130520	exon6	c.G1809T	p.E603D	GGGTTTCTCTCCA	.	83.0	35.0	100.0	1.0	.	90
ZNF329	79673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58639664	58639664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ZNF329	NM_024620	exon4	c.G1207A	p.E403K	CACATTCTTTACA	.	112.0	17.0	111.0	0.0	.	91
ZNF462	58499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	109773122	109773122	+	Silent	SNP	G	G	A	rs147574890	byfrequency	TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	ZNF462	NM_021224	exon13	c.G7332A	p.K2444K	CACCAAGCAGGTG	.	28.0	8.0	41.0	0.0	G|0.999;A|0.001	95
ZNF469	84627	broad.mit.edu;mdanderson.org	37	16	88503345	88503345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XP-01A-11D-A34Z-10	TCGA-ED-A7XP-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1041e66f-f2c8-4391-a397-b067e8d51acd	dcbe4804-a5e8-4a45-bccb-c61bca357514	.	.	NM_001127464	exon2	c.G9383A	p.R3128Q	GCTCGCGGGAGCT	.	11.0	3.0	20.0	0.0	.	.