Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	87051459	87051459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ABCB4	NM_018850	exon18	c.C2294T	p.S765F	AAAAAAGAAATAA	.	274.0	64.0	195.0	0.0	.	96
ABCB7	22	ucsc.edu;bcgsc.ca	37	X	74288850	74288850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ABCB7	NM_004299	exon12	c.G1654T	p.V552L	GAGGTACCACTCC	.	31.0	4.0	39.0	0.0	.	131
ABCG8	64241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	44099245	44099245	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ABCG8	NM_022437	exon7	c.G1095T	p.T365T	AGAGACGAAGGAT	.	75.0	31.0	61.0	0.0	.	94
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64582656	64582656	+	Silent	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ADAMTS9	NM_182920	exon27	c.C4029G	p.T1343T	AGCACAGGTACTG	.	60.0	33.0	72.0	0.0	.	230
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74279198	74279198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ALB	NM_000477	exon8	c.G905T	p.C302F	AGGAATGCTGTGA	.	69.0	30.0	62.0	0.0	.	96
ALDH3B2	222	ucsc.edu;bcgsc.ca	37	11	67433076	67433076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ALDH3B2	NM_001031615	exon7	c.A386G	p.E129G	CCCAGCTCCAGGG	.	44.0	5.0	58.0	0.0	.	226
AMBRA1	55626	ucsc.edu;bcgsc.ca	37	11	46455063	46455063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	AMBRA1	NM_001267782	exon16	c.C2946A	p.F982L	CAGCCTGAAGACC	.	26.0	4.0	40.0	0.0	.	136
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73990633	73990633	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANKRD17	NM_032217	exon18	c.G3489A	p.Q1163Q	TACCTCCTGTCTT	.	45.0	18.0	57.0	0.0	.	234
ANKRD17	26057	ucsc.edu;bcgsc.ca	37	4	73981584	73981584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANKRD17	NM_032217	exon23	c.C4238T	p.P1413L	TCTGATGGAAACT	.	45.0	4.0	40.0	0.0	.	234
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79494388	79494388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANXA3	NM_005139	exon3	c.G70T	p.A24S	GTGGATGCTGAAG	.	27.0	13.0	43.0	0.0	.	90
ARHGEF4	50649	ucsc.edu;bcgsc.ca	37	2	131673441	131673441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ARHGEF4	.	.	.	.	AAGGTCTTCAGGC	.	43.0	5.0	46.0	0.0	.	292
ATP1A3	478	ucsc.edu;bcgsc.ca	37	19	42492480	42492480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ATP1A3	NM_001256214	exon3	c.A182G	p.D61G	ACACAGTCTGTGT	.	39.0	4.0	27.0	0.0	.	92
ATP8A2	51761	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	25946367	25946367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ATP8A2	NM_016529	exon1	c.G17T	p.G6V	GCGCAGGCCTGGA	.	26.0	14.0	30.0	0.0	.	138
BACE1	23621	ucsc.edu;bcgsc.ca	37	11	117164684	117164684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BACE1	NM_012104	exon4	c.A608G	p.K203R	GTCTGCTTTACCA	.	37.0	4.0	46.0	0.0	.	91
BRD8	10902	ucsc.edu;bcgsc.ca	37	5	137504197	137504197	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BRD8	NM_001164326	exon9	c.T823C	p.L275L	TCTTCAAGAGCTC	.	41.0	4.0	57.0	0.0	.	91
BTBD2	55643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1997425	1997425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	BTBD2	NM_017797	exon2	c.A445G	p.M149V	TGAACATGGCATC	.	27.0	15.0	38.0	0.0	.	92
C5AR2	27202	ucsc.edu;bcgsc.ca	37	19	47844239	47844239	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001271750	exon2	c.G183A	p.G61G	GGCTGGGAAGGTG	.	38.0	4.0	42.0	0.0	.	.
C6orf136	221545	ucsc.edu;bcgsc.ca	37	6	30619102	30619102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C6orf136	NM_001161376	exon4	c.T1166C	p.F389S	ATTATTTTGCACA	.	39.0	4.0	41.0	0.0	.	90
C9orf170	401535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	89763702	89763702	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C9orf170	NM_001001709	exon1	c.G57T	p.G19G	CCTGGGGGTGTGG	.	27.0	14.0	34.0	0.0	.	90
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	85984981	85984981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CADM2	NM_001167675	exon7	c.G765T	p.L255F	AATTTTGACTTGT	.	213.0	93.0	218.0	0.0	.	228
CASQ1	844	ucsc.edu;bcgsc.ca	37	1	160165795	160165795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CASQ1	NM_001231	exon6	c.A760G	p.N254D	ATTGTCAACTTCG	.	45.0	5.0	57.0	0.0	.	90
CATSPERG	57828	ucsc.edu;bcgsc.ca	37	19	38827958	38827958	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CATSPERG	NM_021185	exon2	c.G84T	p.V28V	GGCAGTGCTCCTG	.	46.0	4.0	38.0	0.0	.	92
CD300LF	146722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72700898	72700898	+	Missense_Mutation	SNP	C	C	A	rs146550147		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CD300LF	NM_139018	exon2	c.G101T	p.G34V	AAGGAGCCCCGCT	.	84.0	35.0	90.0	0.0	C|1.000;A|0.000	23
CEP192	55125	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	13103583	13103583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CEP192	NM_032142	exon39	c.T6947C	p.V2316A	CTTATGTCAAGGT	.	39.0	4.0	53.0	0.0	.	27
CGB7	94027	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49558233	49558233	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CGB7	NM_033142	exon2	c.C48T	p.G16G	TGTCCCGCCCATG	.	21.0	9.0	21.0	0.0	.	90
CHST15	51363	ucsc.edu;bcgsc.ca	37	10	125805726	125805726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CHST15	NM_001270764	exon2	c.G3T	p.M1I	GTGCCTCATGGTA	.	19.0	4.0	31.0	0.0	.	91
CLEC17A	388512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14705334	14705334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CLEC17A	NM_207390	exon5	c.A283T	p.S95C	GGTTCAAGTGCTC	.	66.0	31.0	57.0	0.0	.	22
CNNM1	26507	ucsc.edu;bcgsc.ca	37	10	101120689	101120689	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CNNM1	NM_020348	exon3	c.C1815A	p.I605I	GAAGATCTCACCA	.	41.0	5.0	35.0	0.0	.	68
COL11A2	1302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33144048	33144048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	COL11A2	NM_080680	exon28	c.T2202A	p.H734Q	ACCCTTATGACCC	.	82.0	36.0	81.0	0.0	.	95
COL19A1	1310	ucsc.edu;bcgsc.ca	37	6	70916914	70916914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	COL19A1	NM_001858	exon51	c.G3365T	p.R1122I	GTGGAAGATGTAA	.	20.0	4.0	35.0	0.0	.	156
CPT1B	1375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51010728	51010728	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CPT1B	NM_001145135	exon12	c.C1362G	p.D454E	GGATTTGTCAAAC	.	34.0	16.0	54.0	0.0	.	116
CST7	8530	ucsc.edu;bcgsc.ca	37	20	24939666	24939666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CST7	NM_003650	exon3	c.C346T	p.H116Y	ACCAACCACACCT	.	37.0	4.0	40.0	0.0	.	91
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266125	41266125	+	Missense_Mutation	SNP	C	C	T	rs121913413	bycluster	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.C122T	p.T41I	CCACTACCACAGC	.	111.0	53.0	121.0	0.0	.	24361
CUZD1	50624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124605313	124605313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CUZD1	NM_022034	exon1	c.C47T	p.S16F	AAACAGGAGAGAA	.	20.0	7.0	34.0	0.0	.	92
DCAF6	55827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167971772	167971772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DCAF6	NM_001198956	exon8	c.C956T	p.T319I	CAGATACTGGACC	.	237.0	64.0	234.0	0.0	.	516
DCN	1634	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	91558424	91558424	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DCN	NM_001920	exon3	c.282delC	p.T94fs	GATTTCGGTTATT	.	145.0	60.0	206.0	0.0	.	555
DEPDC4	120863	ucsc.edu;bcgsc.ca	37	12	100660700	100660700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DEPDC4	NM_152317	exon1	c.C155T	p.T52I	CTACCTGTCCTCC	.	19.0	4.0	37.0	0.0	.	90
DHRS7C	201140	ucsc.edu;bcgsc.ca	37	17	9683305	9683305	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001220493	exon3	c.T318C	p.C106C	TGGGACACAGCTG	.	42.0	4.0	55.0	0.0	.	.
DLX4	1748	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	48046980	48046980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DLX4	NM_138281	exon1	c.C148T	p.P50S	TCCAGGCCGTATG	.	26.0	12.0	33.0	0.0	.	90
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124377824	124377824	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNAH10	NM_207437	exon52	c.C8686T	p.L2896L	TCTATCCTGAGTC	.	67.0	28.0	90.0	0.0	.	95
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7734001	7734001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNAH2	NM_020877	exon78	c.A12071G	p.Y4024C	GCCTCTATCTCGA	.	62.0	24.0	99.0	0.0	.	102
DNALI1	7802	ucsc.edu;bcgsc.ca	37	1	38024944	38024944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNALI1	NM_003462	exon3	c.A310G	p.T104A	GAAGACACGCAGC	.	26.0	5.0	29.0	0.0	.	154
DUOXA2	405753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45408389	45408389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DUOXA2	NM_207581	exon3	c.C273A	p.S91R	CTTCAGCGCAGCG	.	43.0	26.0	41.0	0.0	.	226
EEF1A2	1917	ucsc.edu;mdanderson.org	37	20	62122018	62122018	+	Silent	SNP	C	C	A	rs139282309	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EEF1A2	NM_001958	exon6	c.G843T	p.A281A	CACTGGCGCAAAG	.	17.0	10.0	13.0	0.0	C|1.000;T|0.000	90
EIF3C	8663	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	28734840	28734840	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EIF3C	NM_001199142	exon10	c.1008delG	p.E336fs	TGAGATCCTACAG	.	733.0	112.0	802.0	0.0	.	1
EML2	24139	ucsc.edu;bcgsc.ca	37	19	46112992	46112992	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EML2	NM_001193268	exon22	c.T2482C	p.L828L	CCCACAAGAAGGC	.	41.0	4.0	35.0	0.0	.	154
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41560092	41560092	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EP300	NM_001429	exon22	c.A3764T	p.H1255L	AGATGCATCAGAT	.	217.0	98.0	232.0	0.0	.	2011
EPB41L5	57669	ucsc.edu;bcgsc.ca	37	2	120834553	120834553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EPB41L5	NM_020909	exon8	c.T512C	p.L171P	CTGAACTTGGTGA	.	39.0	4.0	48.0	0.0	.	91
FAM161B	145483	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74409115	74409115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FAM161B	NM_152445	exon4	c.A1418T	p.H473L	TGAGGGTGGCGCA	.	193.0	75.0	227.0	2.0	.	91
FAM83E	54854	ucsc.edu;bcgsc.ca	37	19	49113247	49113247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FAM83E	NM_017708	exon3	c.T644C	p.V215A	ACACGGACATCCA	.	28.0	4.0	35.0	0.0	.	91
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	98896898	98896898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FARP1	NM_001001715	exon3	c.A325G	p.T109A	TCTTACACAAACT	.	57.0	32.0	57.0	0.0	.	290
FBXL4	26235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	99322272	99322272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FBXL4	NM_012160	exon9	c.C1748A	p.S583Y	TTACAAGATTCCA	.	108.0	49.0	116.0	0.0	.	227
FER1L5	90342	broad.mit.edu;mdanderson.org	37	2	97359397	97359397	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FER1L5	NM_001113382	exon31	c.G3528A	p.V1176V	TGTGGTGCTGGAG	.	25.0	12.0	18.0	0.0	.	23
FZD4	8322	ucsc.edu;bcgsc.ca	37	11	86662521	86662521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FZD4	NM_012193	exon2	c.A1277G	p.K426R	TCTGTCTTTGTCC	.	31.0	4.0	44.0	0.0	.	1145
GABRA2	2555	hgsc.bcm.edu;bcgsc.ca	37	4	46390684	46390684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GABRA2	NM_000807	exon2	c.C40A	p.L14I	CAAAAAGCAGGAA	.	309.0	139.0	302.0	1.0	.	94
GABRA2	2555	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	46390679	46390679	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GABRA2	NM_000807	exon2	c.45delT	p.F15fs	GAAAACAAAAAGC	.	316.0	137.0	308.0	0.0	.	94
GAS2L1	10634	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29704470	29704470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GAS2L1	NM_152237	exon2	c.G375T	p.E125D	GACTGAGGACCTG	.	18.0	6.0	30.0	0.0	.	90
GDNF	2668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37815756	37815756	+	Silent	SNP	G	G	A	rs121918536	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GDNF	NM_001190468	exon3	c.C684T	p.I228I	GAGTCAGATACAT	.	93.0	25.0	112.0	0.0	.	90
GDPD2	54857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69644840	69644840	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GDPD2	NM_017711	exon2	c.C6T	p.A2A	CATGGCCGAGTCC	.	45.0	43.0	46.0	0.0	.	132
GLUD1	2746	ucsc.edu;bcgsc.ca	37	10	88813145	88813145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GLUD1	NM_005271	exon12	c.A1511G	p.D504G	ACGATGTCTTTCT	.	40.0	4.0	42.0	0.0	.	90
GRAMD3	65983	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	125819257	125819257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GRAMD3	NM_001146319	exon9	c.A883C	p.N295H	TCTGAGAACTCTC	.	43.0	18.0	39.0	0.0	.	90
GTF3A	2971	ucsc.edu;bcgsc.ca	37	13	28009317	28009317	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_002097	exon8	c.A921G	p.K307K	GAAGAAAATGAAG	.	38.0	4.0	58.0	0.0	.	.
HACL1	26061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15604875	15604875	+	Missense_Mutation	SNP	C	C	G	rs149555880	byfrequency;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HACL1	NM_012260	exon16	c.G1694C	p.R565P	GCCTTCCGTGTGG	.	259.0	132.0	327.0	0.0	C|1.000;T|0.000	90
HCAR1	27198	ucsc.edu;bcgsc.ca	37	12	123214801	123214801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HCAR1	NM_032554	exon1	c.G86A	p.G29D	AGTGCGCCCAGCA	.	43.0	4.0	41.0	0.0	.	156
HELQ	113510	ucsc.edu;bcgsc.ca	37	4	84353404	84353404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HELQ	NM_133636	exon10	c.C2065A	p.P689T	CATAGGGAGCTCT	.	39.0	4.0	45.0	0.0	.	155
HIPK4	147746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40895613	40895613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HIPK4	NM_144685	exon1	c.A197G	p.D66G	TCAGGGTCTAGGC	.	70.0	33.0	118.0	0.0	.	334
HMBS	3145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118963906	118963907	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HMBS	NM_000190	exon14	c.999_1000del	p.333_334del	CCAGAACTTGGGC	.	31.0	14.0	26.0	0.0	.	90
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186097385	186097385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HMCN1	NM_031935	exon83	c.C12866T	p.P4289L	CATTGCCCAAATT	.	57.0	23.0	37.0	0.0	.	113
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	62491884	62491884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HNRNPUL2	NM_001079559	exon2	c.A553C	p.S185R	TTTCACTATCCTG	.	88.0	42.0	122.0	0.0	.	22
IFT172	26160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27688641	27688641	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	IFT172	NM_015662	exon17	c.A1801C	p.T601P	TGGCTGTTCCAAA	.	67.0	33.0	75.0	0.0	.	154
IGF1R	3480	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99491869	99491869	+	Missense_Mutation	SNP	C	C	G	rs45598038	bycluster;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	IGF1R	NM_000875	exon20	c.C3654G	p.N1218K	GTCCAACGAGCAA	.	31.0	14.0	27.0	0.0	.	1490
INHBE	83729	ucsc.edu;bcgsc.ca	37	12	57849918	57849918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	INHBE	NM_031479	exon2	c.T340C	p.S114P	CACCTGTCCACTC	.	45.0	5.0	55.0	1.0	.	577
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	17950393	17950393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	JAK3	NM_000215	exon10	c.G1334A	p.R445Q	TGGGGTCGGCTGA	.	20.0	8.0	15.0	0.0	.	2418
KAT6B	23522	ucsc.edu;bcgsc.ca	37	10	76603214	76603214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_012330	exon3	c.T599C	p.L200P	TCAGCCTTCTACC	.	43.0	4.0	52.0	0.0	.	.
KCNA7	3743	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49573841	49573841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KCNA7	NM_031886	exon2	c.C850T	p.R284C	AGACACGCACCAA	.	28.0	7.0	33.0	0.0	.	90
KCNH8	131096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	19554731	19554731	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KCNH8	NM_144633	exon13	c.C2349T	p.P783P	TGACCCCCCCAAC	.	99.0	31.0	130.0	0.0	.	524
KCTD5	54442	ucsc.edu;bcgsc.ca	37	16	2732726	2732726	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KCTD5	NM_018992	exon1	c.G177A	p.R59R	CACTCGGCAGACC	.	43.0	4.0	61.0	0.0	.	90
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	105557965	105557965	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KIAA1033	NM_015275	exon31	c.G3234A	p.E1078E	TAGAGAGAAATAC	.	77.0	31.0	106.0	0.0	.	91
KIAA1239	57495	broad.mit.edu;bcgsc.ca	37	4	37440708	37440708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001144990	exon6	c.C992A	p.S331Y	GCTACTCCCAAGA	.	96.0	7.0	56.0	0.0	.	.
KRT1	3848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53071186	53071186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KRT1	NM_006121	exon5	c.G1042T	p.D348Y	TGCTGTCCAGGTC	.	57.0	26.0	64.0	0.0	.	92
LAMA4	3910	ucsc.edu;bcgsc.ca	37	6	112513042	112513042	+	Missense_Mutation	SNP	C	C	A	rs147695488	byfrequency;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LAMA4	NM_001105206	exon6	c.G514T	p.G172C	AGTAACCGGGAGC	.	44.0	4.0	41.0	0.0	C|0.999;T|0.001	140
LIPA	3988	ucsc.edu;bcgsc.ca	37	10	91007405	91007405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LIPA	NM_000235	exon2	c.A1G	p.M1V	TTTTCATTCTGTA	.	37.0	4.0	51.0	0.0	.	90
LPO	4025	ucsc.edu;bcgsc.ca	37	17	56329584	56329584	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	LPO	NM_006151	exon8	c.C822T	p.C274C	GAAATGCATGCCT	.	46.0	4.0	50.0	0.0	.	91
MACF1	23499	ucsc.edu;bcgsc.ca	37	1	39818706	39818706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MACF1	NM_012090	exon40	c.A5041G	p.N1681D	GCAGAGAACAAGA	.	46.0	4.0	47.0	0.0	.	165
MAPKAPK2	9261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	206902164	206902166	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MAPKAPK2	NM_004759	exon2	c.389_391del	p.130_131del	ACGCAGGGAGGAA	.	62.0	15.0	74.0	0.0	.	1214
MED12	9968	ucsc.edu;bcgsc.ca	37	X	70349266	70349266	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MED12	NM_005120	exon26	c.T3678C	p.A1226A	CAAGGCTGTGTTT	.	47.0	4.0	75.0	0.0	.	272
MLXIP	22877	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122614579	122614579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MLXIP	NM_014938	exon6	c.T830C	p.L277P	ACATGCTCATGTC	.	66.0	31.0	62.0	1.0	.	92
MOB2	81532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1491556	1491556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001172223	exon5	c.G653A	p.R218Q	AACTCCCGAGCAA	.	61.0	24.0	86.0	0.0	.	.
MPP6	51678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24705683	24705683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MPP6	NM_016447	exon9	c.G927C	p.M309I	AAAGATGATGTAT	.	87.0	40.0	76.0	0.0	.	90
MRGPRF	116535	ucsc.edu;bcgsc.ca	37	11	68773098	68773098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MRGPRF	NM_001098515	exon3	c.G680A	p.R227Q	CGGGCCCGGCACT	.	60.0	5.0	61.0	0.0	.	90
MRPL21	219927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	68664055	68664055	+	Silent	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MRPL21	NM_181514	exon4	c.G324C	p.V108V	AGAGGTCACCTTC	.	69.0	30.0	77.0	0.0	.	90
MTMR1	8776	ucsc.edu;bcgsc.ca	37	X	149905905	149905905	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MTMR1	NM_003828	exon11	c.A1434G	p.G478G	CTTTGGACACAGG	.	39.0	4.0	64.0	0.0	.	131
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16701447	16701447	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MYO10	NM_012334	exon25	c.A3057G	p.R1019R	ACTTGTTCGCTGG	.	61.0	28.0	57.0	0.0	.	3
NAA35	60560	ucsc.edu;bcgsc.ca	37	9	88622288	88622288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NAA35	NM_024635	exon14	c.G1132A	p.D378N	CTGGTGGATAACA	.	41.0	4.0	60.0	0.0	.	92
NFE2L1	4779	ucsc.edu;bcgsc.ca	37	17	46135846	46135846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NFE2L1	NM_003204	exon6	c.G1162T	p.A388S	CCTGTGGCCAGTA	.	44.0	4.0	39.0	0.0	.	91
NLRX1	79671	broad.mit.edu;bcgsc.ca	37	11	119050855	119050855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NLRX1	NM_024618	exon7	c.A2125G	p.T709A	CGCATGACACCAG	.	73.0	6.0	59.0	0.0	.	92
NOL6	65083	ucsc.edu;bcgsc.ca	37	9	33468068	33468068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NOL6	NM_022917	exon11	c.A1384G	p.T462A	TGGGAGTCATCAA	.	45.0	6.0	55.0	0.0	.	92
NOVA1	4857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	26917704	26917704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NOVA1	NM_002515	exon5	c.C985A	p.L329I	TGTTGAGATTATA	.	20.0	11.0	26.0	0.0	.	229
NOX4	50507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	89069054	89069054	+	Silent	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NOX4	NM_016931	exon17	c.G1575C	p.R525R	TTTCCACCGAGGA	.	417.0	181.0	455.0	0.0	.	515
NR6A1	2649	ucsc.edu;bcgsc.ca	37	9	127300557	127300557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NR6A1	NM_033334	exon6	c.A638G	p.Q213R	ATGTACTGTTCCC	.	46.0	4.0	55.0	0.0	.	189
NRXN2	9379	ucsc.edu;bcgsc.ca	37	11	64434897	64434897	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NRXN2	NM_015080	exon9	c.A1623G	p.G541G	GCCAGCTCCACCC	.	49.0	5.0	49.0	1.0	.	232
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176562164	176562164	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NSD1	NM_022455	exon2	c.G60A	p.V20V	TCCAGTGAATTTA	.	56.0	18.0	63.0	0.0	.	188
NWD1	284434	ucsc.edu;bcgsc.ca	37	19	16874716	16874716	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NWD1	NM_001007525	exon9	c.T2211C	p.L737L	CCTGCTTCACTCG	.	35.0	4.0	37.0	0.0	.	7
ODF2	4957	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131256871	131256871	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ODF2	NM_153435	exon17	c.A2027C	p.E676A	TGGCTGAGTGCCA	.	38.0	14.0	52.0	0.0	.	69
OR10Z1	128368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158576688	158576688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR10Z1	NM_001004478	exon1	c.C460T	p.L154F	GGATACCTCTTTG	.	171.0	44.0	135.0	0.0	.	70
OR2T27	403239	broad.mit.edu;mdanderson.org	37	1	248814007	248814007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR2T27	NM_001001824	exon1	c.A179T	p.Y60F	AGGAAGTACATGG	.	212.0	25.0	181.0	0.0	.	47
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158670099	158670099	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR6K2	NM_001005279	exon1	c.C344G	p.T115R	ATAACTGTCAAGA	.	103.0	56.0	90.0	0.0	.	69
PADI4	23569	ucsc.edu;bcgsc.ca	37	1	17674442	17674442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PADI4	NM_012387	exon10	c.A1054G	p.M352V	GATGAAATGGAGA	.	31.0	4.0	29.0	0.0	.	70
PARP6	56965	bcgsc.ca;mdanderson.org	37	15	72541589	72541589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PARP6	NM_020214	exon19	c.T1558C	p.S520P	TACCTGAGTATCC	.	26.0	5.0	29.0	0.0	.	522
PATL1	219988	ucsc.edu;bcgsc.ca	37	11	59423998	59423998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PATL1	NM_152716	exon6	c.T697C	p.S233P	TTGGAGACATCCT	.	45.0	4.0	54.0	0.0	.	1
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30726038	30726038	+	Silent	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PCDH7	NM_032457	exon1	c.T2994A	p.S998S	CAAATCTAGTTCC	.	64.0	22.0	42.0	0.0	.	229
PCDHAC2	56134	ucsc.edu;bcgsc.ca	37	5	140389242	140389242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PCDHAC2	NM_018899	exon4	c.T2744C	p.V915A	CTCCAGTCGGTGC	.	51.0	4.0	55.0	0.0	.	26
PDLIM7	9260	ucsc.edu;bcgsc.ca	37	5	176916491	176916491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PDLIM7	NM_005451	exon9	c.C772T	p.R258C	AGGTGCGGCTCTG	.	43.0	4.0	39.0	0.0	.	153
PDP2	57546	ucsc.edu;bcgsc.ca	37	16	66918397	66918397	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PDP2	NM_020786	exon2	c.A210G	p.E70E	AGAGGAAGATGAT	.	48.0	4.0	45.0	0.0	.	91
PHRF1	57661	ucsc.edu;bcgsc.ca	37	11	609443	609443	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PHRF1	NM_020901	exon14	c.A3984G	p.E1328E	CGATGAAGACCCT	.	22.0	4.0	25.0	0.0	.	22
PLEKHA1	59338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124166157	124166157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLEKHA1	NM_001195608	exon6	c.G310T	p.V104L	GAATGGGTAAATG	.	139.0	62.0	149.0	0.0	.	226
PLEKHF1	79156	ucsc.edu;bcgsc.ca	37	19	30164931	30164931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLEKHF1	NM_024310	exon2	c.T185C	p.L62P	ACATCCTGGTGTA	.	26.0	4.0	35.0	0.0	.	226
PLEKHG1	57480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151161944	151161944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLEKHG1	NM_001029884	exon17	c.T4070G	p.L1357R	ACTATCTTTGGAG	.	65.0	26.0	94.0	0.0	.	92
PLXNB3	5365	ucsc.edu;bcgsc.ca	37	X	153039372	153039372	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLXNB3	NM_001163257	exon21	c.T3407A	p.V1136E	CTGCTGTACCAGA	.	15.0	4.0	28.0	0.0	.	130
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	108131857	108131857	+	Silent	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PNPLA8	NM_001256008	exon7	c.T1680A	p.P560P	TACCTTAGGACAT	.	147.0	56.0	115.0	0.0	.	135
PPP2R5E	5529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	63858560	63858560	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PPP2R5E	NM_006246	exon10	c.G929A	p.W310X	TTAGGCCAAAATT	.	88.0	34.0	122.0	0.0	.	658
PRDM15	63977	ucsc.edu;bcgsc.ca	37	21	43291640	43291640	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PRDM15	NM_022115	exon4	c.G504A	p.A168A	TGCACTCGCAGGG	.	42.0	4.0	31.0	0.0	.	90
PSAP	5660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73610968	73610968	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PSAP	NM_002778	exon1	c.T11A	p.L4H	AGGAAGAGGGCGT	.	56.0	32.0	54.0	0.0	.	91
PTPRQ	374462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80933705	80933705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001145026	exon17	c.G2620A	p.V874I	ATTGAAGTATACA	.	62.0	26.0	80.0	0.0	.	.
PVRIG	79037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	99818613	99818613	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PVRIG	NM_024070	exon6	c.C720A	p.C240X	CAGCTGCCGCCCA	.	102.0	30.0	100.0	0.0	.	24
RAB3IP	117177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70149324	70149324	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RAB3IP	NM_175623	exon2	c.T184G	p.S62A	CACCCTTCAGCTT	.	106.0	37.0	84.0	0.0	.	227
RALGPS1	9649	ucsc.edu;bcgsc.ca	37	9	129975267	129975267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RALGPS1	NM_014636	exon17	c.G1491T	p.M497I	CTGGATGGTGCAG	.	38.0	4.0	63.0	0.0	.	227
RAPGEF6	51735	ucsc.edu;bcgsc.ca	37	5	130788807	130788807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RAPGEF6	NM_001164387	exon22	c.T3155C	p.I1052T	TGGCGGATTTCCT	.	44.0	4.0	77.0	0.0	.	661
RGS12	6002	ucsc.edu;bcgsc.ca	37	4	3432244	3432244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RGS12	NM_002926	exon17	c.T3676C	p.S1226P	CCTGGTTCCACAG	.	36.0	4.0	60.0	0.0	.	226
RGS14	10636	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176798894	176798894	+	Silent	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RGS14	NM_006480	exon15	c.C1519A	p.R507R	CTGAACCGGGTGC	.	19.0	7.0	35.0	0.0	.	226
RNF135	84282	ucsc.edu;bcgsc.ca	37	17	29326154	29326154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RNF135	NM_032322	exon5	c.G1244T	p.W415L	CCTTCTGGCTGTA	.	34.0	4.0	47.0	0.0	.	227
RPF2	84154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111318428	111318428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RPF2	NM_032194	exon5	c.G277A	p.G93S	ATGTTTGGCTCCC	.	95.0	36.0	122.0	0.0	.	92
RPS6KA5	9252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	91338575	91338575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RPS6KA5	NM_004755	exon17	c.C2252G	p.T751S	GTACTGGTGCTAG	.	224.0	108.0	215.0	0.0	.	979
RSPH10B	222967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	5967916	5967916	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RSPH10B	NM_173565	exon20	c.A2343G	p.E781E	GATAGCTTCTTCA	.	465.0	135.0	667.0	0.0	.	23
RSPO2	340419	ucsc.edu;bcgsc.ca	37	8	109094801	109094801	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RSPO2	NM_178565	exon2	c.A66G	p.Q22Q	GTTGCCTTGGCAG	.	39.0	4.0	53.0	0.0	.	231
SALL3	27164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	76754127	76754127	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SALL3	NM_171999	exon2	c.C2136T	p.C712C	GATCTGCGGCCGC	.	21.0	9.0	33.0	0.0	.	155
SCARF2	91179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20784723	20784723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SCARF2	NM_182895	exon6	c.G1195A	p.G399R	GGGGCCCGTGGAC	.	22.0	14.0	19.0	0.0	.	341
SERPINB13	5275	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61255920	61255920	+	Missense_Mutation	SNP	G	G	A	rs139825462		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SERPINB13	NM_012397	exon2	c.G19A	p.V7I	GGCGCCGTCAGCA	.	128.0	68.0	156.0	1.0	G|1.000;A|0.000	227
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30977205	30977205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SETD1A	NM_014712	exon8	c.G2003T	p.R668L	TGGACCGACTTGG	.	113.0	48.0	113.0	0.0	.	93
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198267360	198267360	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SF3B1	NM_012433	exon14	c.A1997C	p.K666T	ACAATCTTAATAC	.	128.0	58.0	120.0	0.0	.	140
SH3BGRL	6451	ucsc.edu;bcgsc.ca	37	X	80457736	80457736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SH3BGRL	NM_003022	exon1	c.T37C	p.S13P	TCTGGCTCTACAG	.	16.0	4.0	17.0	0.0	.	131
SHCBP1L	81626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182873386	182873386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SHCBP1L	NM_030933	exon8	c.G1516A	p.E506K	TTCCTTCACATTT	.	111.0	24.0	75.0	0.0	.	91
SHPRH	257218	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146264776	146264776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SHPRH	NM_173082	exon9	c.G1741T	p.V581F	ATGGAACAAGCTT	.	178.0	70.0	231.0	1.0	.	92
SIGLEC1	6614	ucsc.edu;bcgsc.ca	37	20	3682281	3682281	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SIGLEC1	NM_023068	exon6	c.T1236C	p.P412P	AGTGAGAGGCGGG	.	36.0	4.0	36.0	0.0	.	167
SKIV2L2	23517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54637586	54637586	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SKIV2L2	NM_015360	exon7	c.T768C	p.Y256Y	TCATTATATGAGA	.	102.0	42.0	99.0	0.0	.	92
SLC12A7	10723	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1094302	1094302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC12A7	NM_006598	exon2	c.C186A	p.S62R	AAAGAAGCTCTCT	.	60.0	20.0	123.0	2.0	.	138
SLC25A52	147407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29339767	29339767	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001034172	exon1	c.C888T	p.I296I	TGCATTGATTATG	.	131.0	46.0	132.0	0.0	.	.
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44223037	44223037	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC35B2	NM_178148	exon4	c.C705T	p.Y235Y	GTGTTCGTAGCTG	.	63.0	28.0	77.0	0.0	.	91
SMARCA4	6597	ucsc.edu;bcgsc.ca	37	19	11118594	11118594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SMARCA4	NM_003072	exon14	c.A2018G	p.Q673R	AAGAGCAGCCGCA	.	28.0	4.0	22.0	0.0	.	1523
SMIM14	201895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39553765	39553765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_174921	exon5	c.C281T	p.P94L	GGAGCTGGTGGAT	.	205.0	88.0	251.0	1.0	.	.
SP2	6668	ucsc.edu;bcgsc.ca	37	17	46005144	46005144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SP2	NM_003110	exon7	c.A1796G	p.H599R	GTGACCACCTCAC	.	34.0	4.0	45.0	0.0	.	90
SPAG9	9043	ucsc.edu;bcgsc.ca	37	17	49072464	49072464	+	Missense_Mutation	SNP	C	C	A	rs201501137	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPAG9	NM_001130528	exon18	c.G2180T	p.R727L	GCACTTCGCTGTT	.	39.0	4.0	52.0	0.0	C|0.999;T|0.000	659
SPARCL1	8404	ucsc.edu;bcgsc.ca	37	4	88412785	88412785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPARCL1	NM_004684	exon5	c.A1276G	p.R426G	GCACCCTCATGTT	.	46.0	4.0	79.0	0.0	.	91
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158605719	158605719	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPTA1	NM_003126	exon38	c.G5416C	p.E1806Q	CCAACTCTTTGAG	.	72.0	55.0	48.0	0.0	.	142
ST18	9705	ucsc.edu;bcgsc.ca	37	8	53085085	53085085	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ST18	NM_014682	exon10	c.C336A	p.S112S	CCTACTGGAGTTT	.	30.0	4.0	28.0	0.0	.	95
STON2	85439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81737182	81737182	+	Silent	SNP	A	A	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	STON2	NM_001256430	exon7	c.T2445G	p.L815L	GAGTTCAAGGTGG	.	34.0	11.0	46.0	0.0	.	95
SYT16	83851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	62550920	62550920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SYT16	NM_031914	exon5	c.G1441T	p.G481W	AGTGGAGGGTCTC	.	71.0	26.0	81.0	0.0	.	23
TBC1D17	79735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50387721	50387721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TBC1D17	NM_024682	exon12	c.G1249A	p.V417I	GGCTACGTCCAGG	.	80.0	39.0	87.0	0.0	.	90
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183267884	183267884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001080477	exon2	c.C313T	p.L105F	ATGGGGCTCCCTC	.	71.0	31.0	92.0	0.0	.	.
TFCP2	7024	ucsc.edu;bcgsc.ca	37	12	51500323	51500323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TFCP2	NM_001173452	exon8	c.T902C	p.F301S	AGAGAAAAACTGC	.	32.0	4.0	50.0	0.0	.	91
TMEM260	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57070549	57070549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_017799	exon4	c.G361A	p.A121T	TCATCTGCTGGAG	.	174.0	67.0	223.0	0.0	.	.
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	98938066	98938066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TMPO	NM_001032283	exon5	c.G722A	p.G241E	AAGGCGGACCTCT	.	112.0	57.0	117.0	0.0	.	93
TMTC1	83857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29659790	29659790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TMTC1	NM_001193451	exon18	c.G2638A	p.D880N	TTTGATCCTTTTC	.	119.0	47.0	149.0	0.0	.	90
TRAIP	10293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49867199	49867199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRAIP	NM_005879	exon13	c.G1087A	p.E363K	GGGACTCCTGCAG	.	19.0	11.0	31.0	0.0	.	849
TRAK2	66008	broad.mit.edu;bcgsc.ca	37	2	202245315	202245315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRAK2	NM_015049	exon16	c.C2696T	p.A899V	ACTGGGGCAGCAA	.	98.0	39.0	119.0	2.0	.	90
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	202245316	202245316	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRAK2	NM_015049	exon16	c.G2695C	p.A899P	CTGGGGCAGCAAA	.	99.0	42.0	118.0	0.0	.	90
TRIOBP	11078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38120914	38120914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRIOBP	NM_001039141	exon7	c.A2351G	p.N784S	CTCCCAATAGAGC	.	138.0	69.0	148.0	0.0	.	136
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179560596	179560596	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TTN	NM_001267550	exon114	c.T31203C	p.Y10401Y	ACCTTCATAGACC	.	190.0	85.0	236.0	0.0	.	636
TXNDC16	57544	ucsc.edu;bcgsc.ca	37	14	52981605	52981605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TXNDC16	NM_020784	exon8	c.A598G	p.S200G	CAATACTTTCCAA	.	47.0	4.0	50.0	0.0	.	22
UGT2B10	7365	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69682095	69682095	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	UGT2B10	.	.	.	.	ATTAATGACATAA	.	241.0	97.0	236.0	0.0	.	65
UNK	85451	ucsc.edu;bcgsc.ca	37	17	73808351	73808351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	UNK	NM_001080419	exon3	c.C473T	p.S158F	TCCGCTCCCCTGT	.	48.0	4.0	61.0	0.0	.	68
WDR18	57418	ucsc.edu;bcgsc.ca	37	19	990892	990892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	WDR18	NM_024100	exon5	c.T638C	p.L213P	CCGTCCTCTTTGA	.	49.0	5.0	75.0	0.0	.	91
WWP2	11060	ucsc.edu;bcgsc.ca	37	16	69973316	69973316	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	WWP2	NM_001270454	exon23	c.G2513C	p.C838S	ACACCTGGTGAGC	.	25.0	4.0	36.0	0.0	.	658
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168100450	168100450	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	XIRP2	NM_152381	exon9	c.T2548C	p.L850L	CAGCCATTAGACA	.	135.0	55.0	173.0	0.0	.	104
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168104420	168104420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	XIRP2	NM_152381	exon9	c.G6518T	p.G2173V	CAGTTGGAGGAAC	.	116.0	55.0	124.0	0.0	.	104
ZBTB38	253461	ucsc.edu;bcgsc.ca	37	3	141162187	141162187	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZBTB38	NM_001080412	exon8	c.C957T	p.S319S	TTTTTCCAGGGAA	.	46.0	5.0	42.0	0.0	.	25
ZCCHC5	203430	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	77913190	77913190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZCCHC5	NM_152694	exon2	c.C728A	p.T243N	CTGAAGGTTAAAG	.	38.0	35.0	39.0	1.0	.	131
ZMYM2	7750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20567272	20567272	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZMYM2	NM_001190964	exon4	c.G60A	p.G20G	ATTAGGGAGTACG	.	123.0	54.0	99.0	0.0	.	685
ZNF160	90338	ucsc.edu;bcgsc.ca	37	19	53572755	53572755	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF160	NM_001102603	exon7	c.T1032C	p.N344N	ACACTCATTACAC	.	61.0	6.0	58.0	0.0	.	90
ZNF197	10168	ucsc.edu;bcgsc.ca	37	3	44684049	44684049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF197	NM_006991	exon6	c.A1427G	p.H476R	GGCGCCATTCAGG	.	40.0	5.0	40.0	0.0	.	230
ZNF43	7594	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	21990784	21990784	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF43	NM_001256653	exon4	c.A2082G	p.K694K	AAAAGCTTTGCCA	.	13.0	6.0	17.0	0.0	.	154
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22363944	22363944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF676	NM_001001411	exon3	c.C575A	p.T192N	TCTCCAGTATGAA	.	55.0	29.0	46.0	0.0	.	90
ZNF71	58491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57133787	57133787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF71	NM_021216	exon3	c.G1132T	p.G378C	CACACCGGCGAGA	.	78.0	30.0	118.0	0.0	.	91
ZSCAN5A	79149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56735066	56735066	+	Silent	SNP	T	T	C	rs199886337		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZSCAN5A	NM_024303	exon3	c.A522G	p.P174P	TTCCCCTGGACGC	.	32.0	16.0	44.0	0.0	T|0.999;C|0.001	155