Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq AADAT 51166 hgsc.bcm.edu;bcgsc.ca 37 4 170999725 170999725 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . AADAT NM_182662 exon5 c.A379G p.M127V TGATCATTTCAAA . 67.0 4.0 102.0 0.0 . 90 ABCA12 26154 hgsc.bcm.edu;bcgsc.ca 37 2 215797448 215797448 + Silent SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ABCA12 NM_173076 exon53 c.C7698A p.A2566A GTCTTTGGCAAAG . 96.0 4.0 106.0 0.0 . 99 ABCA13 154664 hgsc.bcm.edu;bcgsc.ca 37 7 48312768 48312768 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ABCA13 NM_152701 exon17 c.A3505G p.M1169V TTTGACATGAATG . 97.0 5.0 113.0 0.0 . 521 ABCA4 24 hgsc.bcm.edu;bcgsc.ca 37 1 94517230 94517230 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ABCA4 NM_000350 exon17 c.G2612T p.W871L AAGTACCAAGGAA . 102.0 5.0 154.0 0.0 . 162 ADAM18 8749 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 39495084 39495084 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ADAM18 NM_014237 exon9 c.T689C p.I230T CTGTTATACTGTC . 182.0 81.0 173.0 0.0 . 228 ADAM20 8748 hgsc.bcm.edu;bcgsc.ca 37 14 70989894 70989894 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ADAM20 NM_003814 exon2 c.T1731C p.S577S ACTCTGAGATGCA . 85.0 5.0 125.0 0.0 . 226 ADAMTS5 11096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 28296553 28296553 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ADAMTS5 NM_007038 exon8 c.G2612T p.G871V TGTGATCCCACTT . 133.0 51.0 104.0 0.0 . 229 AGMAT 79814 hgsc.bcm.edu;bcgsc.ca 37 1 15901266 15901266 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . AGMAT NM_024758 exon6 c.C971A p.P324Q TCATACGGTGGTG . 64.0 4.0 83.0 0.0 . 91 AGO3 192669 hgsc.bcm.edu;bcgsc.ca 37 1 36439085 36439085 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_024852 exon5 c.A631G p.M211V CCTGCCATGTGGA . 139.0 6.0 236.0 0.0 . . AKAP13 11214 hgsc.bcm.edu;bcgsc.ca 37 15 86286858 86286858 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . AKAP13 NM_006738 exon36 c.A8206G p.N2736D AAAAGGAACAGCA . 78.0 4.0 129.0 0.0 . 258 ANK2 287 hgsc.bcm.edu;bcgsc.ca 37 4 114279607 114279607 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ANK2 NM_001148 exon38 c.C9833A p.P3278Q CTTCCCCAGAAGA . 116.0 6.0 146.0 0.0 . 583 ANKLE2 23141 hgsc.bcm.edu;bcgsc.ca 37 12 133313525 133313525 + Missense_Mutation SNP G G T rs201586661 alternate_allele TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ANKLE2 NM_015114 exon8 c.C1547A p.P516Q AGTACCGGGTCTC . 76.0 4.0 64.0 0.0 . 68 ANXA13 312 hgsc.bcm.edu;bcgsc.ca 37 8 124693533 124693533 + Missense_Mutation SNP G G T rs201212750 alternate_allele TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ANXA13 NM_001003954 exon12 c.C1021A p.R341S CTGAGCGAACCAT . 124.0 5.0 153.0 0.0 G|0.999;A|0.000 93 AP1AR 55435 hgsc.bcm.edu;bcgsc.ca 37 4 113174413 113174413 + Splice_Site SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . AP1AR NM_001128426 exon2 c.132+1G>A . ATAGAGGTAAGTA . 83.0 5.0 126.0 0.0 . 90 AP3D1 8943 hgsc.bcm.edu;bcgsc.ca 37 19 2138617 2138617 + Splice_Site SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . AP3D1 NM_003938 exon3 c.192+1G>A . CACTTACATACGT . 101.0 7.0 72.0 0.0 . 90 AR 367 hgsc.bcm.edu;bcgsc.ca 37 X 66766306 66766306 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . AR NM_000044 exon1 c.A1318G p.T440A CTCTTCACAGCCG . 43.0 4.0 45.0 0.0 . 661 ARAF 369 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 47430811 47430811 + Missense_Mutation SNP T T A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ARAF NM_001256196 exon16 c.T1785A p.D595E GGCCGATGAGTTG . 146.0 73.0 137.0 0.0 . 1557 ARHGAP20 57569 hgsc.bcm.edu;bcgsc.ca 37 11 110479748 110479748 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ARHGAP20 NM_020809 exon9 c.G735T p.W245C ATTGACCCACAAC . 102.0 5.0 124.0 0.0 . 230 ARID1A 8289 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 27106505 27106506 + Frame_Shift_Ins INS - - T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ARID1A NM_006015 exon20 c.6116_6117insT p.Q2039fs AGGACCAAGGGGT . 171.0 126.0 276.0 0.0 . 584 ART1 417 hgsc.bcm.edu;broad.mit.edu 37 11 3681383 3681383 + Nonsense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ART1 NM_004314 exon3 c.C634T p.Q212X GCCCAGCAGTTTG . 138.0 6.0 124.0 0.0 . 90 ASIC3 9311 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 150747908 150747908 + Missense_Mutation SNP C C G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_020322 exon4 c.C877G p.P293A TATGAGCCAGAGC . 66.0 15.0 64.0 0.0 . . ATP2A1 487 hgsc.bcm.edu;bcgsc.ca 37 16 28914131 28914131 + Silent SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ATP2A1 NM_004320 exon19 c.C2643A p.T881T CAACACCCACTTT . 121.0 5.0 160.0 0.0 . 93 ATP2A2 488 hgsc.bcm.edu;bcgsc.ca 37 12 110729905 110729905 + Silent SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ATP2A2 NM_001681 exon4 c.C300A p.A100A AGTAGCCAATGCA . 200.0 8.0 217.0 0.0 . 94 ATP8A2 51761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 26273474 26273474 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ATP8A2 NM_016529 exon25 c.T2375C p.I792T CGGTCATATGCTG . 90.0 48.0 91.0 0.0 . 138 ATR 545 hgsc.bcm.edu;bcgsc.ca 37 3 142281918 142281918 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ATR NM_001184 exon4 c.G326T p.R109L GCAATCCGCAGAA . 83.0 4.0 87.0 0.0 . 1139 BAAT 570 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 104130448 104130448 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . BAAT NM_001127610 exon3 c.T623C p.L208S TATTCCAAATCTG . 142.0 65.0 118.0 0.0 . 228 BCL2L2-PABPN1 100529063 hgsc.bcm.edu;bcgsc.ca 37 14 23794468 23794468 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_001199864 exon9 c.A975G p.R325R GGCTAGAGCGACA . 109.0 5.0 201.0 0.0 . . BHLHA15 168620 hgsc.bcm.edu;bcgsc.ca 37 7 97842082 97842082 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . BHLHA15 NM_177455 exon1 c.A461G p.Q154R ACTACCAGCAGCA . 73.0 4.0 102.0 0.0 . 90 BLM 641 hgsc.bcm.edu;bcgsc.ca 37 15 91304196 91304196 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . BLM NM_000057 exon7 c.A1593G p.K531K TGTGAAAGATCAG . 93.0 4.0 112.0 0.0 . 664 BMPER 168667 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 34101636 34101636 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . BMPER NM_133468 exon12 c.G1055T p.G352V GAAAAGGATGCTG . 102.0 44.0 151.0 1.0 . 92 BOD1L1 259282 hgsc.bcm.edu;bcgsc.ca 37 4 13602619 13602619 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_148894 exon10 c.A5905G p.T1969A CTGGTGTCACTTC . 63.0 4.0 99.0 0.0 . . BTRC 8945 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 103281409 103281409 + Missense_Mutation SNP A A T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . BTRC NM_033637 exon5 c.A338T p.N113I TTGCCAATGGCAC . 148.0 53.0 99.0 0.0 . 659 C10orf12 26148 hgsc.bcm.edu;bcgsc.ca 37 10 98741962 98741962 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . C10orf12 NM_015652 exon1 c.T815C p.V272A GAGACGTTTCACC . 108.0 6.0 86.0 0.0 . 92 C18orf42 642597 broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 5145618 5145618 + Silent SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_001145194 exon2 c.C153T p.N51N GTCCCGGTTGTCA . 257.0 145.0 283.0 2.0 . . C2orf16 84226 hgsc.bcm.edu;bcgsc.ca 37 2 27803792 27803792 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . C2orf16 NM_032266 exon1 c.T4353C p.P1451P CAGACCTCTTCGA . 73.0 4.0 68.0 0.0 . 67 C2orf81 388963 hgsc.bcm.edu;bcgsc.ca 37 2 74643206 74643206 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_001145054 exon2 c.G190T p.G64W TGTCCCCTACGAC . 64.0 4.0 82.0 0.0 . . CACNA1I 8911 hgsc.bcm.edu;bcgsc.ca 37 22 39994207 39994207 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CACNA1I NM_001003406 exon2 c.T288C p.L96L GACACTTGGCATG . 98.0 4.0 140.0 0.0 . 135 CADM2 253559 hgsc.bcm.edu;bcgsc.ca 37 3 85932563 85932563 + Frame_Shift_Del DEL A A - novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CADM2 NM_001167675 exon4 c.361delA p.K121fs CCTGTCAAAACTT . 126.0 29.0 161.0 0.0 . 228 CADM2 253559 hgsc.bcm.edu;bcgsc.ca 37 3 85932567 85932567 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CADM2 NM_001167675 exon4 c.C365T p.T122I TCAAAACTTCCAA . 121.0 31.0 157.0 0.0 . 228 CAND1 55832 hgsc.bcm.edu;bcgsc.ca 37 12 67699020 67699020 + Silent SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CAND1 NM_018448 exon10 c.G1572T p.V524V TCCAGTGGTGGCT . 173.0 7.0 163.0 0.0 . 516 CBLN1 869 hgsc.bcm.edu;bcgsc.ca 37 16 49313350 49313350 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CBLN1 NM_004352 exon3 c.T547C p.S183P AGGTCGAGTACTT . 133.0 6.0 214.0 0.0 . 90 CCDC158 339965 hgsc.bcm.edu;bcgsc.ca 37 4 77255317 77255317 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CCDC158 NM_001042784 exon18 c.T2668C p.S890P TTGTAGAGTGCTG . 124.0 5.0 174.0 0.0 . 96 CCDC19 25790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 159846466 159846466 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CCDC19 NM_012337 exon10 c.G1232A p.R411Q TTCTTCCGCGCAT . 1191.0 239.0 851.0 1.0 . 91 CCIN 881 hgsc.bcm.edu;bcgsc.ca 37 9 36170794 36170794 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CCIN NM_005893 exon1 c.G1295T p.R432L CTGGACGGTGCTT . 92.0 5.0 86.0 0.0 . 92 CCSER1 401145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 91230222 91230222 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_001145065 exon2 c.T787C p.L263L TTAGCCTTGACTG . 31.0 4.0 46.0 0.0 . . CCT8L2 150160 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 17072001 17072001 + Silent SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CCT8L2 NM_014406 exon1 c.G1440T p.V480V AGTTCCCACACCC . 155.0 113.0 285.0 0.0 . 69 CDC42 998 hgsc.bcm.edu;bcgsc.ca 37 1 22417973 22417973 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CDC42 NM_001791 exon6 c.C539T p.P180L AGCCTCCAGAACC . 77.0 4.0 167.0 0.0 . 1084 CDHR3 222256 hgsc.bcm.edu;bcgsc.ca 37 7 105621574 105621574 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CDHR3 NM_152750 exon3 c.C410A p.A137E ACTTGGCAGAAGG . 83.0 4.0 128.0 0.0 . 23 CDK14 5218 hgsc.bcm.edu;bcgsc.ca 37 7 90747440 90747440 + Missense_Mutation SNP G G T rs74839397 byfrequency;alternate_allele TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CDK14 NM_012395 exon13 c.G1301T p.R434L GCATGCGGGCCTT . 93.0 4.0 115.0 0.0 G|0.999;A|0.001 970 CDRT15 146822 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 14139241 14139241 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CDRT15 NM_001007530 exon3 c.T499C p.W167R GCATCCATGCCTG . 357.0 81.0 311.0 0.0 . 90 CDS1 1040 hgsc.bcm.edu;bcgsc.ca 37 4 85562071 85562071 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CDS1 NM_001263 exon10 c.A960G p.E320E GACAGAATGTGAG . 98.0 4.0 167.0 0.0 . 155 CELSR2 1952 hgsc.bcm.edu;bcgsc.ca 37 1 109794818 109794818 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CELSR2 NM_001408 exon1 c.A2117G p.N706S ACGCCAACACCCA . 61.0 4.0 99.0 0.0 . 526 CEP192 55125 hgsc.bcm.edu;bcgsc.ca 37 18 13015339 13015339 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CEP192 NM_032142 exon6 c.G532T p.D178Y GTGCTTGATGCTG . 89.0 4.0 89.0 0.0 . 27 CEP250 11190 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 34067549 34067549 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CEP250 NM_007186 exon19 c.G2367T p.Q789H GGGGCAGCTGGAG . 127.0 41.0 170.0 0.0 . 27 CEP350 9857 hgsc.bcm.edu;bcgsc.ca 37 1 180013222 180013222 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CEP350 NM_014810 exon21 c.A4536G p.E1512E TAAAGAAGGGACC . 96.0 5.0 70.0 0.0 . 26 CEP55 55165 hgsc.bcm.edu;bcgsc.ca 37 10 95275260 95275260 + Silent SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CEP55 NM_001127182 exon5 c.G627T p.T209T GAAAACGGAAACA . 148.0 6.0 111.0 0.0 . 90 CHADL 150356 hgsc.bcm.edu;bcgsc.ca 37 22 41634867 41634867 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CHADL NM_138481 exon3 c.A209G p.Q70R TTGCCCTGCAGGT . 56.0 4.0 89.0 0.0 . 68 CHD7 55636 hgsc.bcm.edu;bcgsc.ca 37 8 61757431 61757431 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CHD7 NM_017780 exon22 c.G4859T p.R1620L GGGGACGGTGGAC . 110.0 5.0 70.0 0.0 . 141 CHSY1 22856 hgsc.bcm.edu;bcgsc.ca 37 15 101718547 101718547 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CHSY1 NM_014918 exon3 c.T1455C p.H485H CTCCTCATGCTCC . 81.0 4.0 93.0 0.0 . 90 CLCA2 9635 hgsc.bcm.edu;bcgsc.ca 37 1 86900325 86900325 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CLCA2 NM_006536 exon6 c.C869T p.P290L GCTTTCCCATGAA . 89.0 4.0 131.0 0.0 . 155 CLCN1 1180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 143016896 143016896 + Missense_Mutation SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CLCN1 NM_000083 exon2 c.G229A p.G77R GACATAGGGATGC . 88.0 39.0 91.0 0.0 . 156 COL4A4 1286 hgsc.bcm.edu;bcgsc.ca 37 2 227895215 227895215 + Missense_Mutation SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . COL4A4 NM_000092 exon41 c.C3917T p.P1306L GGGCCTGGTGGGC . 72.0 4.0 77.0 0.0 . 142 COL5A3 50509 hgsc.bcm.edu;bcgsc.ca 37 19 10106242 10106242 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . COL5A3 NM_015719 exon16 c.A1585G p.M529V TCACCATCTTGCC . 80.0 4.0 55.0 0.0 . 99 COL7A1 1294 hgsc.bcm.edu;bcgsc.ca 37 3 48625362 48625362 + Silent SNP T T C rs201566458 TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . COL7A1 NM_000094 exon21 c.A2721G p.E907E GGACTGTTCCTGG . 69.0 4.0 60.0 0.0 . 160 COX5A 9377 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 75221502 75221502 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . COX5A NM_004255 exon2 c.A172G p.T58A AGTATGTTACCCA . 121.0 39.0 183.0 0.0 . 90 CR1L 1379 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 207890960 207890960 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CR1L NM_175710 exon11 c.C1566T p.I522I CACCATCCGCCGC . 546.0 77.0 361.0 0.0 . 46 CRB2 286204 hgsc.bcm.edu;bcgsc.ca 37 9 126133645 126133645 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CRB2 NM_173689 exon8 c.G2224T p.G742W GACCTGGGGCAGC . 143.0 6.0 124.0 0.0 . 91 CSMD1 64478 hgsc.bcm.edu;bcgsc.ca 37 8 2949044 2949044 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CSMD1 NM_033225 exon48 c.T7279C p.Y2427H CTGCATAGCGAAT . 76.0 4.0 92.0 0.0 . 86 CSPG4 1464 hgsc.bcm.edu;bcgsc.ca 37 15 75982391 75982391 + Missense_Mutation SNP G G T rs200187536 alternate_allele TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CSPG4 NM_001897 exon3 c.C1015A p.R339S CCAGGCGGTGTTC . 62.0 4.0 63.0 0.0 G|0.999;A|0.001 229 CSRP2 1466 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 77253334 77253334 + Silent SNP A A G rs202057442 TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CSRP2 NM_001321 exon5 c.T498C p.Y166Y TTTACAATAGATT . 332.0 161.0 333.0 1.0 A|0.999;G|0.001 91 CUBN 8029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 17142090 17142090 + Missense_Mutation SNP C C G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CUBN NM_001081 exon14 c.G1679C p.S560T TTGTCACTGCTGA . 264.0 116.0 205.0 0.0 . 166 CXADR 1525 hgsc.bcm.edu;bcgsc.ca 37 21 18919456 18919456 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CXADR NM_001207065 exon2 c.C155A p.P52Q AGGGACCGCTGGA . 57.0 4.0 67.0 0.0 . 227 CXorf22 170063 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 35971756 35971756 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CXorf22 NM_152632 exon7 c.A1094G p.D365G GACAGGACTATGC . 362.0 122.0 433.0 2.0 . 131 CYP4A11 1579 hgsc.bcm.edu;bcgsc.ca 37 1 47406949 47406949 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . CYP4A11 NM_000778 exon1 c.T157C p.C53R GAGGGCACGGGAA . 71.0 4.0 159.0 0.0 . 94 DACH2 117154 hgsc.bcm.edu;bcgsc.ca 37 X 85404070 85404070 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DACH2 NM_001139514 exon1 c.G446T p.R149M TCACCAGGAAAGA . 59.0 4.0 61.0 0.0 . 136 DALRD3 55152 hgsc.bcm.edu;bcgsc.ca 37 3 49053492 49053492 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DALRD3 NM_001009996 exon10 c.A1357G p.I453V GGAGGATACTGTT . 88.0 4.0 93.0 0.0 . 90 DAPP1 27071 hgsc.bcm.edu;bcgsc.ca 37 4 100756811 100756811 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DAPP1 NM_014395 exon2 c.G133T p.A45S CATGCTGCTGAAG . 100.0 5.0 124.0 0.0 . 93 DCAF7 10238 hgsc.bcm.edu;bcgsc.ca 37 17 61666468 61666468 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DCAF7 NM_005828 exon8 c.G963T p.W321C GCAGTGGGCATCA . 124.0 5.0 107.0 0.0 . 91 DCDC5 100506627 hgsc.bcm.edu;bcgsc.ca 37 11 30938424 30938424 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DCDC5 NM_020869 exon7 c.A766G p.K256E TGTGTTTCTTCTG . 146.0 6.0 152.0 0.0 . 23 DCUN1D4 23142 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 4 52740446 52740446 + Missense_Mutation SNP G G T rs142966675 TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 DCUN1D4,NS,carcinoma,0 DCUN1D4 NM_015115 exon4 c.G146T p.R49L GTCTGCGGTCTTG . 32.0 4.0 39.0 0.0 G|1.000;T|0.000 92 DEF8 54849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 90023996 90023996 + Silent SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DEF8 NM_207514 exon5 c.C483A p.P161P GCTGCCCGAGCAG . 273.0 232.0 421.0 0.0 . 68 DENND4B 9909 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 153906108 153906108 + Missense_Mutation SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DENND4B NM_014856 exon20 c.C3181T p.L1061F GTTGGAGGCGGGC . 379.0 219.0 220.0 0.0 . 69 DEPDC5 9681 hgsc.bcm.edu;bcgsc.ca 37 22 32217607 32217607 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DEPDC5 NM_001136029 exon22 c.C1990T p.H664Y GCATATCATGAAG . 74.0 4.0 88.0 0.0 . 519 DEPTOR 64798 hgsc.bcm.edu;bcgsc.ca 37 8 120977517 120977517 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DEPTOR NM_022783 exon4 c.A471G p.E157E GGAGGAAGGGGTC . 86.0 4.0 72.0 0.0 . 227 DHX9 1660 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 182847265 182847265 + Missense_Mutation SNP C C G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DHX9 NM_001357 exon20 c.C2308G p.P770A GTACGGCCTGGAT . 256.0 27.0 174.0 1.0 . 92 DLG4 1742 hgsc.bcm.edu;bcgsc.ca 37 17 7097797 7097797 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DLG4 NM_001365 exon14 c.A1448G p.D483G GTCTTGTCGTAAT . 56.0 4.0 56.0 0.0 . 24 DMD 1756 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 32715997 32715997 + Missense_Mutation SNP A A T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DMD NM_004006 exon9 c.T950A p.F317Y GAAGGAAATGGGC . 177.0 88.0 232.0 2.0 . 265 DNAH9 1770 hgsc.bcm.edu;bcgsc.ca 37 17 11661007 11661007 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DNAH9 NM_001372 exon35 c.C6993T p.T2331T CAGAACCAGGTAG . 143.0 6.0 148.0 0.0 . 168 DNAJB5 25822 hgsc.bcm.edu;bcgsc.ca 37 9 34990809 34990809 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DNAJB5 NM_001135004 exon2 c.G308T p.R103L AGTTTCGGTAAGT . 59.0 4.0 69.0 0.0 . 226 DNAJC8 22826 hgsc.bcm.edu;bcgsc.ca 37 1 28536549 28536549 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DNAJC8 NM_014280 exon5 c.G333A p.L111L CTGATCCAGTAGC . 74.0 4.0 132.0 0.0 . 90 DOCK3 1795 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 51297588 51297588 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DOCK3 NM_004947 exon23 c.C2186A p.A729D TTCAGGCCTTGGA . 182.0 8.0 193.0 0.0 . 22 DYNC2H1 79659 hgsc.bcm.edu;bcgsc.ca 37 11 103152947 103152947 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . DYNC2H1 NM_001080463 exon73 c.T10822C p.L3608L GACATGTTACGGA . 76.0 4.0 106.0 0.0 . 68 EFCAB14 9813 hgsc.bcm.edu;bcgsc.ca 37 1 47149060 47149060 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_014774 exon10 c.G1224A p.L408L TTTTGGCAATGCT . 59.0 4.0 106.0 0.0 . . EGFR 1956 hgsc.bcm.edu;bcgsc.ca 37 7 55224338 55224338 + Silent SNP G G T rs2302536 byfrequency;alternate_allele TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . EGFR NM_201283 exon9 c.G1119T p.P373P CCTGCCGGTGGCA . 120.0 5.0 162.0 0.0 G|0.997;A|0.003 44910 ELTD1 64123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 79404924 79404924 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ELTD1 NM_022159 exon4 c.C345A p.C115X TAAATGGCAGTTT . 278.0 219.0 450.0 1.0 . 24 EML3 256364 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 62370651 62370651 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . EML3 NM_153265 exon20 c.T2326C p.Y776H AGGTGTAGGTAGC . 62.0 4.0 51.0 0.0 . 91 EMR3 84658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 14765979 14765979 + Splice_Site SNP T T A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . EMR3 NM_032571 exon7 c.394-2A>T . TGCAGCTTTGAAG . 309.0 135.0 259.0 1.0 . 528 ENGASE 64772 hgsc.bcm.edu;bcgsc.ca 37 17 77073755 77073755 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ENGASE NM_001042573 exon3 c.T225C p.Y75Y ATATTATGACAAG . 78.0 4.0 61.0 0.0 . 91 ERC2 26059 hgsc.bcm.edu;bcgsc.ca 37 3 56207475 56207475 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ERC2 NM_015576 exon4 c.A1148G p.K383R CCTACCTTCATTT . 93.0 4.0 89.0 0.0 . 24 ERCC3 2071 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 128051105 128051105 + Missense_Mutation SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ERCC3 NM_000122 exon2 c.C218T p.S73F GGCCTGGAGGTGT . 172.0 54.0 174.0 0.0 . 723 ESYT1 23344 hgsc.bcm.edu;bcgsc.ca 37 12 56530663 56530663 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ESYT1 NM_001184796 exon16 c.A1798G p.K600E TATATGAAACTAG . 77.0 4.0 88.0 0.0 . 95 F5 2153 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 169515769 169515769 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . F5 NM_000130 exon11 c.A1673G p.Y558C TCAAGGTACCAGC . 239.0 22.0 153.0 1.0 . 157 FAM111B 374393 hgsc.bcm.edu;bcgsc.ca 37 11 58877115 58877115 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . FAM111B NM_198947 exon3 c.C17A p.T6N TGAAGACTGAAGA . 64.0 4.0 61.0 0.0 . 92 FAM188A 80013 hgsc.bcm.edu;bcgsc.ca 37 10 15883432 15883432 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . FAM188A NM_024948 exon4 c.A402G p.E134E AGAATGTTCCACT . 89.0 6.0 71.0 0.0 . 228 FAM208A 23272 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 56658883 56658883 + Missense_Mutation SNP G G C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_001112736 exon22 c.C4291G p.Q1431E GTTGCTGTATGTT . 326.0 167.0 360.0 1.0 . . FAM217A 222826 hgsc.bcm.edu;bcgsc.ca 37 6 4070154 4070154 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_173563 exon7 c.G303T p.R101S GAATTCCCTTTAA . 100.0 4.0 68.0 0.0 . . FAM71E1 112703 hgsc.bcm.edu;bcgsc.ca 37 19 50971076 50971076 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . FAM71E1 NM_138411 exon4 c.T502C p.L168L ACTTCAAGGGGAA . 77.0 4.0 61.0 0.0 . 44 FARP2 9855 hgsc.bcm.edu;bcgsc.ca 37 2 242432429 242432429 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . FARP2 NM_014808 exon25 c.T2873C p.L958S TCTGTTTGTTCTT . 98.0 4.0 81.0 0.0 . 93 FAT3 120114 hgsc.bcm.edu;bcgsc.ca 37 11 92087868 92087868 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . FAT3 NM_001008781 exon1 c.G2590T p.G864C TCTAATGGTGAAG . 98.0 4.0 73.0 0.0 . 73 FBF1 85302 hgsc.bcm.edu;bcgsc.ca 37 17 73916127 73916127 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . FBF1 NM_001080542 exon18 c.A1847G p.Q616R TGGTGCTGCTGCT . 115.0 5.0 96.0 0.0 . 205 FBLN1 2192 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 45943008 45943008 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . FBLN1 NM_006487 exon12 c.C1365T p.A455A GTGTGCCAACGTC . 45.0 33.0 80.0 0.0 . 515 FBN2 2201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 127704892 127704892 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . FBN2 NM_001999 exon16 c.G2231A p.C744Y GCAGGGCATGGCT . 38.0 15.0 42.0 0.0 . 146 FCGBP 8857 hgsc.bcm.edu;bcgsc.ca 37 19 40440523 40440523 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . FCGBP NM_003890 exon1 c.G3T p.M1I GGCACCCATGGCT . 57.0 4.0 51.0 0.0 . 98 FETUB 26998 hgsc.bcm.edu;bcgsc.ca 37 3 186358341 186358341 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . FETUB NM_014375 exon1 c.T92C p.L31P CGGCTCTGCTCTC . 129.0 6.0 174.0 0.0 . 92 FRAS1 80144 hgsc.bcm.edu;bcgsc.ca 37 4 79455681 79455681 + Silent SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . FRAS1 NM_025074 exon71 c.C11004A p.L3668L TCAGCTCTGCAAT . 79.0 4.0 139.0 0.0 . 68 FXYD6-FXYD2 100533181 hgsc.bcm.edu;bcgsc.ca 37 11 117712509 117712509 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_001243598 exon4 c.C169A p.L57I TACTTAGGATAAG . 87.0 5.0 112.0 0.0 . . FYN 2534 hgsc.bcm.edu;bcgsc.ca 37 6 112021440 112021440 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 FYN,NS,carcinoma,-2 FYN NM_002037 exon9 c.A729G p.V243V GGGAACTACTAGG . 78.0 4.0 112.0 0.0 . 1000 GALNT13 114805 hgsc.bcm.edu;bcgsc.ca 37 2 155295139 155295139 + Silent SNP C C A rs182009673 alternate_allele TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GALNT13 NM_052917 exon12 c.C1431A p.T477T CCGAACCGATGAC . 117.0 5.0 141.0 0.0 C|0.999;T|0.001 95 GAS2L2 246176 hgsc.bcm.edu;bcgsc.ca 37 17 34074044 34074044 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GAS2L2 NM_139285 exon5 c.C1076A p.P359Q AGGAATGGTGCCA . 80.0 5.0 86.0 0.0 . 227 GBP6 163351 hgsc.bcm.edu;bcgsc.ca 37 1 89843997 89843997 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GBP6 NM_198460 exon5 c.A450G p.E150E CACAGAACTAATT . 64.0 4.0 95.0 0.0 . 92 GFM1 85476 hgsc.bcm.edu;bcgsc.ca 37 3 158364696 158364696 + Silent SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GFM1 NM_024996 exon4 c.C532A p.R178R TTGGACCGAATGG . 92.0 4.0 93.0 0.0 . 93 GFRA1 2674 hgsc.bcm.edu;bcgsc.ca 37 10 117853332 117853332 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GFRA1 NM_005264 exon8 c.C896A p.P299H TAGTTGGGGGTCA . 123.0 5.0 101.0 0.0 . 93 GIT2 9815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 110390999 110390999 + Silent SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GIT2 NM_001135213 exon14 c.C1146T p.H382H AACGCTGTGCTGG . 467.0 195.0 448.0 0.0 . 226 GLE1 2733 hgsc.bcm.edu;bcgsc.ca 37 9 131277857 131277857 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GLE1 NM_001499 exon3 c.G371T p.R124L CCTCACGGGGGAT . 51.0 4.0 93.0 0.0 . 22 GPIHBP1 338328 hgsc.bcm.edu;bcgsc.ca 37 8 144296897 144296897 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GPIHBP1 NM_178172 exon3 c.G191T p.R64L TGCTGCGGTGCTA . 122.0 6.0 94.0 0.0 . 68 GRIA4 2893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 105781253 105781253 + Silent SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GRIA4 NM_001077244 exon10 c.G1251T p.V417V AACAGTGGTTGTA . 158.0 49.0 209.0 0.0 . 230 GRIN2A 2903 hgsc.bcm.edu;bcgsc.ca 37 16 9857312 9857312 + Silent SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GRIN2A NM_000833 exon14 c.C4089A p.S1363S GTTATCGGAGGTG . 63.0 4.0 120.0 0.0 . 349 GRIN2A 2903 hgsc.bcm.edu;bcgsc.ca 37 16 9862782 9862782 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GRIN2A NM_000833 exon13 c.T2521C p.F841L AGTAGAAGAGGTG . 54.0 4.0 77.0 0.0 . 349 GRIN2A 2903 hgsc.bcm.edu;bcgsc.ca 37 16 9943750 9943750 + Silent SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GRIN2A NM_000833 exon6 c.C1191A p.S397S ACAGTCGGAGAAG . 62.0 4.0 120.0 0.0 . 349 GRM3 2913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 86415661 86415661 + Missense_Mutation SNP G G C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GRM3 NM_000840 exon3 c.G553C p.D185H CGCTATGATTACT . 224.0 89.0 294.0 0.0 . 528 GTF3C2 2976 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 2 27550059 27550059 + Silent SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GTF3C2 NM_001521 exon19 c.C2502T p.N834N AGCCTCCAGCTGC . 44.0 4.0 64.0 0.0 . 92 GYG2 8908 hgsc.bcm.edu;bcgsc.ca 37 X 2774545 2774545 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . GYG2 NM_003918 exon7 c.A587G p.D196G GGGCAGACCAAGG . 80.0 4.0 108.0 0.0 . 132 HCRTR1 3061 hgsc.bcm.edu;bcgsc.ca 37 1 32087137 32087137 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . HCRTR1 NM_001525 exon6 c.C682T p.L228L GCCCCACTGGGCC . 75.0 4.0 115.0 0.0 . 523 HERC1 8925 hgsc.bcm.edu;bcgsc.ca 37 15 63916007 63916007 + Silent SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . HERC1 NM_003922 exon73 c.C13528A p.R4510R ACGCTCGGGAAGG . 50.0 4.0 75.0 0.0 . 666 HNF1B 6928 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 17 36091619 36091619 + Nonsense_Mutation SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . HNF1B NM_000458 exon4 c.C1012T p.Q338X TGGGCTGGTGGTG . 431.0 174.0 421.0 0.0 . 71 HOXA11 3207 hgsc.bcm.edu;bcgsc.ca 37 7 27222608 27222608 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . HOXA11 NM_005523 exon2 c.A749G p.K250R TGGTACTTGGTAT . 72.0 4.0 102.0 0.0 . 1082 HPGD 3248 hgsc.bcm.edu;bcgsc.ca 37 4 175443106 175443106 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . HPGD NM_000860 exon2 c.A206G p.Q69R AGTTGTTGCTGGT . 57.0 4.0 85.0 0.0 . 90 HSD17B1 3292 hgsc.bcm.edu;bcgsc.ca 37 17 40706435 40706435 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . HSD17B1 NM_000413 exon5 c.C552T p.I184I CCTGATCGAGTGC . 60.0 4.0 39.0 0.0 . 90 HSPG2 3339 hgsc.bcm.edu;bcgsc.ca 37 1 22180694 22180694 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . HSPG2 NM_005529 exon50 c.A6431G p.Y2144C GGGGTGTAGCTGG . 58.0 4.0 109.0 0.0 . 141 IFI27L1 122509 hgsc.bcm.edu;bcgsc.ca 37 14 94568841 94568841 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . IFI27L1 NM_145249 exon5 c.T242C p.V81A TCTCTGTGACATC . 83.0 4.0 136.0 0.0 . 90 IFNG 3458 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 68551870 68551870 + Missense_Mutation SNP A A T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . IFNG NM_000619 exon3 c.T189A p.S63R TCTGTCACTCTCC . 112.0 37.0 93.0 0.0 . 90 IRF2BPL 64207 hgsc.bcm.edu;bcgsc.ca 37 14 77491917 77491917 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . IRF2BPL NM_024496 exon1 c.T2219C p.F740S CAAGGGAAGCAAA . 79.0 4.0 115.0 0.0 . 90 IRF8 3394 hgsc.bcm.edu;bcgsc.ca 37 16 85946744 85946744 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . IRF8 NM_002163 exon5 c.T455C p.V152A CTTCTGTGGACGA . 68.0 4.0 132.0 0.0 . 154 ITFG3 83986 hgsc.bcm.edu;bcgsc.ca 37 16 312091 312091 + Splice_Site SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ITFG3 NM_032039 exon7 c.709-1G>T . ATTGCAGGTTAGT . 113.0 5.0 243.0 0.0 . 90 ITGA11 22801 hgsc.bcm.edu;bcgsc.ca 37 15 68631922 68631922 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ITGA11 NM_001004439 exon11 c.A1192G p.T398A CACTCGTCTCCTT . 58.0 5.0 85.0 0.0 . 538 ITGB2 3689 hgsc.bcm.edu;bcgsc.ca 37 21 46330223 46330223 + Silent SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ITGB2 NM_000211 exon3 c.C123A p.P41P GCAGCCGGGCCCC . 143.0 6.0 104.0 0.0 . 717 JAKMIP1 152789 hgsc.bcm.edu;bcgsc.ca 37 4 6087187 6087187 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . JAKMIP1 NM_001099433 exon4 c.C794A p.P265Q CCGGGCGGGAGCT . 63.0 4.0 95.0 0.0 . 292 JARID2 3720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 15497298 15497298 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . JARID2 NM_004973 exon7 c.C1842T p.I614I GCACATCCACAAG . 156.0 65.0 155.0 0.0 . 228 KCNH8 131096 hgsc.bcm.edu;bcgsc.ca 37 3 19575099 19575099 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . KCNH8 NM_144633 exon16 c.T2832C p.Y944Y TGCTTATACCCAA . 120.0 5.0 125.0 0.0 . 524 KIAA0020 9933 hgsc.bcm.edu;bcgsc.ca 37 9 2807906 2807906 + Splice_Site SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . KIAA0020 NM_014878 exon18 c.1724-2A>G . ACAACCTGTAAAA . 73.0 4.0 42.0 0.0 . 91 KIAA0319L 79932 hgsc.bcm.edu;bcgsc.ca 37 1 35928256 35928256 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . KIAA0319L NM_024874 exon8 c.T1260C p.S420S TGGCAAAGAGATC . 56.0 4.0 96.0 0.0 . 92 KIAA0922 23240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 154524546 154524546 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . KIAA0922 NM_001131007 exon24 c.A2731G p.S911G AATGCTAGCTCCT . 170.0 147.0 247.0 0.0 . 92 KIAA0947 23379 hgsc.bcm.edu;bcgsc.ca 37 5 5489287 5489287 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . KIAA0947 NM_015325 exon19 c.A6645G p.A2215A GTTAGCAGCCGTG . 83.0 4.0 76.0 0.0 . 48 KIAA1549L 25758 hgsc.bcm.edu;bcgsc.ca 37 11 33573676 33573676 + Silent SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_012194 exon5 c.G2853T p.A951A CCAAGCGGACAAC . 75.0 4.0 103.0 0.0 . . KIF16B 55614 hgsc.bcm.edu;bcgsc.ca 37 20 16492142 16492142 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . KIF16B NM_001199865 exon6 c.A477G p.R159R TAGATCTCTCACA . 94.0 4.0 106.0 0.0 . 291 KIF17 57576 hgsc.bcm.edu;bcgsc.ca 37 1 21014288 21014288 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . KIF17 NM_020816 exon8 c.G1531T p.D511Y AGACATCGTCACT . 73.0 4.0 124.0 0.0 . 94 KL 9365 hgsc.bcm.edu;bcgsc.ca 37 13 33635814 33635814 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . KL NM_004795 exon4 c.C2598T p.L866L AGACCTCCCCATG . 83.0 4.0 88.0 0.0 . 155 KLF17 128209 hgsc.bcm.edu;bcgsc.ca 37 1 44595054 44595054 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . KLF17 NM_173484 exon2 c.C111T p.N37N CTTGAACATGTCT . 84.0 4.0 144.0 0.0 . 92 KLHL8 57563 hgsc.bcm.edu;bcgsc.ca 37 4 88098001 88098001 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . KLHL8 NM_020803 exon6 c.T1116C p.G372G ATGTCCACCTACT . 97.0 4.0 156.0 0.0 . 90 KNTC1 9735 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 123055607 123055607 + Missense_Mutation SNP G G C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . KNTC1 NM_014708 exon24 c.G1953C p.E651D GGCAGAGATATTT . 232.0 15.0 254.0 0.0 . 543 KPNA7 402569 hgsc.bcm.edu;bcgsc.ca 37 7 98792707 98792707 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . KPNA7 NM_001145715 exon4 c.T539C p.L180P TTACCAAGAGCCC . 73.0 4.0 129.0 0.0 . 158 KRT1 3848 hgsc.bcm.edu;bcgsc.ca 37 12 53069530 53069530 + Splice_Site SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . KRT1 NM_006121 exon9 c.1476-2A>G . ACATCCTGTAGGA . 139.0 6.0 153.0 0.0 . 92 KRT77 374454 hgsc.bcm.edu;bcgsc.ca 37 12 53086273 53086273 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . KRT77 NM_175078 exon7 c.G1359A p.L453L GACCCCCAGCATG . 100.0 5.0 102.0 0.0 . 187 LAMA3 3909 hgsc.bcm.edu;bcgsc.ca 37 18 21355846 21355846 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . LAMA3 NM_001127717 exon10 c.A1364G p.E455G ACTGTGAGAAGTG . 101.0 5.0 122.0 0.0 . 100 LANCL1 10314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 211341073 211341073 + Silent SNP G G C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . LANCL1 NM_001136574 exon2 c.C48G p.S16S GGCCAGGGATTTG . 322.0 163.0 374.0 0.0 . 90 LDOC1L 84247 hgsc.bcm.edu;bcgsc.ca 37 22 44893427 44893427 + Missense_Mutation SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . LDOC1L NM_032287 exon2 c.C10T p.P4S TCTGCGGCTGCAC . 66.0 4.0 119.0 0.0 . 69 LEPR 3953 hgsc.bcm.edu;bcgsc.ca 37 1 66067256 66067256 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . LEPR NM_001003680 exon9 c.T1176C p.T392T AGTTACTTTTTTC . 90.0 4.0 166.0 0.0 . 91 LIN7C 55327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 27523454 27523454 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . LIN7C NM_018362 exon2 c.A51G p.A17A TTCAATTGCTCTA . 87.0 28.0 94.0 0.0 . 90 LMO2 4005 hgsc.bcm.edu;bcgsc.ca 37 11 33890910 33890910 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . LMO2 NM_005574 exon4 c.A230G p.K77R AGGCTCTTCCTTT . 45.0 4.0 41.0 0.0 . 658 LPHN1 22859 hgsc.bcm.edu;bcgsc.ca 37 19 14273762 14273762 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . LPHN1 NM_001008701 exon6 c.G866T p.R289L ACCAGCCGCCCGT . 89.0 4.0 62.0 0.0 . 523 LRGUK 136332 hgsc.bcm.edu;bcgsc.ca 37 7 133876488 133876488 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . LRGUK NM_144648 exon12 c.T1416C p.D472D TTTTGATGAAATG . 87.0 4.0 154.0 0.0 . 227 LRRC17 10234 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 102584705 102584705 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . LRRC17 NM_001031692 exon4 c.A977G p.N326S CAAACAACAGTCT . 78.0 33.0 109.0 0.0 . 91 LRRC56 115399 hgsc.bcm.edu;bcgsc.ca 37 11 540775 540775 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . LRRC56 NM_198075 exon4 c.C91T p.P31S CACAACCCCTGCC . 69.0 4.0 67.0 0.0 . 91 MARS 4141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 57910119 57910119 + Missense_Mutation SNP A A C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . MARS NM_004990 exon20 c.A2555C p.Q852P CAAAACAAGTATG . 156.0 69.0 163.0 0.0 . 654 MDFIC 29969 hgsc.bcm.edu;bcgsc.ca 37 7 114619590 114619590 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . MDFIC NM_199072 exon4 c.A574G p.T192A CTTCAGACTTCAG . 87.0 4.0 140.0 0.0 . 91 MDN1 23195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 90368429 90368429 + Missense_Mutation SNP T T G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . MDN1 NM_014611 exon89 c.A14921C p.E4974A GAGTGTTCTTCAG . 314.0 149.0 319.0 1.0 . 100 MED12L 116931 hgsc.bcm.edu;bcgsc.ca 37 3 151107911 151107911 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . MED12L NM_053002 exon36 c.T5491C p.S1831P AACCAATCTCTTA . 55.0 4.0 52.0 0.0 . 576 MGRN1 23295 hgsc.bcm.edu;bcgsc.ca 37 16 4715144 4715144 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . MGRN1 NM_001142291 exon7 c.T670C p.F224L GCTGCCTTTGAAA . 61.0 4.0 154.0 0.0 . 92 MMAA 166785 hgsc.bcm.edu;bcgsc.ca 37 4 146575291 146575291 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . MMAA NM_172250 exon6 c.C965A p.P322Q GGAAACCAAAGGT . 76.0 4.0 94.0 0.0 . 91 MMGT1 93380 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 135053250 135053250 + Missense_Mutation SNP T T A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . MMGT1 NM_173470 exon2 c.A99T p.L33F TTCTGTTAATCGC . 484.0 245.0 578.0 0.0 . 130 MPO 4353 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 56355209 56355209 + Missense_Mutation SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . MPO NM_000250 exon7 c.C1183T p.R395C GGATGCGCGCTGA . 37.0 15.0 38.0 0.0 . 156 MSANTD3 91283 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 103212870 103212870 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_001198805 exon3 c.C450T p.C150C ACTGTGCGATGAT . 195.0 86.0 173.0 0.0 . . MSANTD3-TMEFF1 100526694 hgsc.bcm.edu;bcgsc.ca 37 9 103312401 103312401 + Missense_Mutation SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_001198812 exon7 c.G956A p.G319E TGTTGGGAAAGAA . 63.0 4.0 65.0 0.0 . . MUC4 4585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 195517320 195517320 + Silent SNP G G C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . MUC4 NM_018406 exon2 c.C1131G p.T377T GGATGAGGTGGTT . 377.0 117.0 394.0 0.0 . 90 MYLK2 85366 hgsc.bcm.edu;bcgsc.ca 37 20 30419870 30419870 + Silent SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . MYLK2 NM_033118 exon12 c.C1641A p.A547A GAAAGCCAAACGC . 98.0 6.0 77.0 0.0 . 760 MYO9A 4649 hgsc.bcm.edu;bcgsc.ca 37 15 72196317 72196317 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . MYO9A NM_006901 exon21 c.A2830G p.T944A GAACTGTTTCCAG . 91.0 4.0 125.0 0.0 . 93 MYOM1 8736 hgsc.bcm.edu;bcgsc.ca 37 18 3187546 3187546 + Silent SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . MYOM1 NM_003803 exon5 c.G861T p.T287T CCAAACCGTGTGG . 89.0 4.0 115.0 0.0 . 94 MYOZ2 51778 hgsc.bcm.edu;bcgsc.ca 37 4 120079175 120079175 + Splice_Site SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . MYOZ2 NM_016599 exon4 c.247-2A>G . AAATACAGCACAG . 75.0 4.0 146.0 0.0 . 90 NAA16 79612 hgsc.bcm.edu;bcgsc.ca 37 13 41892974 41892974 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . NAA16 NM_001110798 exon3 c.T172C p.C58R CTGAACTGTTTAG . 82.0 4.0 84.0 0.0 . 90 NAB1 4664 hgsc.bcm.edu;bcgsc.ca 37 2 191548468 191548468 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . NAB1 NM_005966 exon7 c.G1010T p.G337V AGGATGGGTTTCC . 80.0 5.0 91.0 0.0 . 226 NBEA 26960 hgsc.bcm.edu;bcgsc.ca 37 13 35517180 35517180 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . NBEA NM_015678 exon1 c.G223T p.A75S AAATTCGCAGTGT . 116.0 5.0 165.0 0.0 . 144 NCAN 1463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 19359573 19359573 + Nonsense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . NCAN NM_004386 exon14 c.C3702A p.Y1234X CAAGTACAATGTC . 126.0 60.0 129.0 0.0 . 94 NKD1 85407 hgsc.bcm.edu;bcgsc.ca 37 16 50667325 50667325 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . NKD1 NM_033119 exon10 c.C1046T p.P349L GGTCCCCCAAGGC . 149.0 7.0 275.0 0.0 . 226 NKX6-3 157848 broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 41503971 41503971 + Silent SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . NKX6-3 NM_152568 exon2 c.C405T p.V135V GCGTCAGACGCTG . 97.0 43.0 97.0 1.0 . 90 NPPC 4880 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 232790144 232790144 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . NPPC NM_024409 exon2 c.G372A p.L124L ACATCCCAGGCCG . 110.0 22.0 90.0 0.0 . 90 NPTX1 4884 hgsc.bcm.edu;bcgsc.ca 37 17 78445639 78445639 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . NPTX1 NM_002522 exon4 c.G970T p.G324W AGACCCCGTCCCG . 84.0 4.0 74.0 0.0 . 90 NRG2 9542 broad.mit.edu;bcgsc.ca 37 5 139232521 139232521 + Silent SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . NRG2 NM_013982 exon8 c.C1408A p.R470R CCAGCCGGGGGTG . 163.0 8.0 164.0 1.0 . 526 NUDT15 55270 hgsc.bcm.edu;bcgsc.ca 37 13 48611895 48611895 + Missense_Mutation SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . NUDT15 NM_018283 exon1 c.G13A p.A5T GCCAGCGCACAGC . 61.0 4.0 74.0 0.0 . 90 NUP98 4928 hgsc.bcm.edu;bcgsc.ca 37 11 3716712 3716712 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . NUP98 NM_016320 exon26 c.A4134G p.R1378R GCGCAGTCTCTCA . 71.0 4.0 57.0 0.0 . 703 OAS2 4939 hgsc.bcm.edu;bcgsc.ca 37 12 113444238 113444238 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . OAS2 NM_002535 exon8 c.A1489G p.T497A GGCTCCACACCCA . 98.0 4.0 131.0 0.0 . 91 OR2B3 442184 hgsc.bcm.edu;bcgsc.ca 37 6 29054566 29054566 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . OR2B3 NM_001005226 exon1 c.G460T p.G154C AGTTGCCGAAACC . 102.0 5.0 72.0 0.0 . 1 OR2T3 343173 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 248637025 248637025 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . OR2T3 NM_001005495 exon1 c.A374G p.Y125C TGGCCTATGACCG . 787.0 209.0 545.0 0.0 . 69 OR8A1 390275 hgsc.bcm.edu;bcgsc.ca 37 11 124440852 124440852 + Silent SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . OR8A1 NM_001005194 exon1 c.G888T p.T296T CACCACGGTAATC . 154.0 8.0 180.0 0.0 . 69 OSBPL6 114880 hgsc.bcm.edu;bcgsc.ca 37 2 179197627 179197627 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . OSBPL6 NM_001201482 exon8 c.G516T p.W172C TGCATGGGTCTCC . 122.0 5.0 126.0 0.0 . 69 PAM 5066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 102237061 102237061 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PAM NM_138822 exon3 c.C212A p.S71Y AATAGTCCGATAC . 382.0 137.0 380.0 1.0 . 68 PC 5091 hgsc.bcm.edu;bcgsc.ca 37 11 66639169 66639169 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PC NM_000920 exon4 c.A310G p.K104E CCACCTTGATGAT . 88.0 4.0 86.0 0.0 . 228 PCDHB11 56125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 140579924 140579924 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PCDHB11 NM_018931 exon1 c.G577T p.E193X TACCCCGAGTTAG . 262.0 123.0 196.0 0.0 . 96 PCDHB15 56121 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 140626597 140626597 + Missense_Mutation SNP C C G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PCDHB15 NM_018935 exon1 c.C1451G p.A484G CCAACGCCCAGGT . 277.0 125.0 240.0 0.0 . 156 PCDHGA4 56111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140735864 140735864 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_018917 exon1 c.T1097C p.I366T CAGTAATTGCACT . 114.0 45.0 91.0 0.0 . . PDCD6IP 10015 broad.mit.edu;bcgsc.ca 37 3 33870347 33870347 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PDCD6IP NM_001162429 exon7 c.G735T p.E245D CCAGGAGGTGTTC . 1058.0 49.0 1129.0 2.0 . 228 PDS5A 23244 hgsc.bcm.edu;bcgsc.ca 37 4 39910134 39910134 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_001100399 exon11 c.C1114A p.P372T CTTCTGGATCATG . 68.0 4.0 92.0 0.0 . . PHF21A 51317 hgsc.bcm.edu;bcgsc.ca 37 11 46098351 46098351 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PHF21A NM_016621 exon5 c.A107G p.Q36R TGAAGCTGTTTCT . 89.0 4.0 105.0 0.0 . 92 PHF21B 112885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 45291935 45291935 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PHF21B NM_138415 exon6 c.T860C p.L287P GTAACCAGGCCTA . 98.0 67.0 139.0 0.0 . 93 PHKB 5257 hgsc.bcm.edu;bcgsc.ca 37 16 47545621 47545621 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PHKB NM_000293 exon5 c.T451C p.S151P CTTCACTCTGTTT . 86.0 4.0 138.0 0.0 . 154 PIK3CD 5293 hgsc.bcm.edu;bcgsc.ca 37 1 9782115 9782115 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PIK3CD NM_005026 exon17 c.A2138G p.E713G CCAAGGAGCTGAT . 82.0 4.0 147.0 0.0 . 1311 PIK3CD 5293 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 9781914 9781914 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PIK3CD NM_005026 exon16 c.A2051G p.K684R TGATGAAGCAGGT . 28.0 4.0 33.0 0.0 . 1311 PKD1L2 114780 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 81185495 81185495 + RNA SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PKD1L2 . . . . AGGTCATAGACCA . 90.0 72.0 194.0 0.0 . 92 PLAGL1 5325 hgsc.bcm.edu;bcgsc.ca 37 6 144263706 144263706 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PLAGL1 NM_001080953 exon7 c.A247G p.T83A CGTGGGTCTGGAG . 55.0 4.0 42.0 0.0 . 91 PLCXD2 257068 hgsc.bcm.edu;bcgsc.ca 37 3 111427204 111427204 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PLCXD2 NM_001185106 exon2 c.C595A p.L199M TTGACGCTGCGAA . 118.0 5.0 141.0 0.0 . 227 POLG 5428 hgsc.bcm.edu;bcgsc.ca 37 15 89876764 89876764 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . POLG NM_002693 exon2 c.G222T p.L74F GATGTCCAATGGG . 70.0 4.0 85.0 0.0 . 228 POLR3B 55703 hgsc.bcm.edu;bcgsc.ca 37 12 106824192 106824192 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . POLR3B NM_018082 exon14 c.C1405T p.R469C GGTCCTCGCTCCC . 91.0 4.0 115.0 0.0 . 91 PROX1 5629 hgsc.bcm.edu;bcgsc.ca 37 1 214170676 214170676 + Silent SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PROX1 NM_001270616 exon2 c.G798T p.S266S TGATTCGGAAAAT . 88.0 4.0 69.0 0.0 . 654 PRR23A 729627 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 138725110 138725110 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_001134659 exon1 c.A1G p.M1V TGCCCATAGCCTC . 12.0 8.0 19.0 0.0 . . PRSS12 8492 hgsc.bcm.edu;bcgsc.ca 37 4 119203115 119203115 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PRSS12 NM_003619 exon13 c.G2604T p.W868C TTTTATCCAAGGT . 64.0 4.0 81.0 0.0 . 91 PTGR2 145482 hgsc.bcm.edu;bcgsc.ca 37 14 74350824 74350824 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PTGR2 NM_152444 exon10 c.A1000G p.T334A ATGATGACAGGAG . 91.0 4.0 106.0 0.0 . 90 PTPN9 5780 hgsc.bcm.edu;bcgsc.ca 37 15 75761250 75761250 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . PTPN9 NM_002833 exon13 c.T1642C p.S548P TGCGTGACACCGT . 67.0 4.0 100.0 0.0 . 226 RASGRF1 5923 hgsc.bcm.edu;bcgsc.ca 37 15 79254552 79254552 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . RASGRF1 NM_002891 exon28 c.T3756C p.S1252S TACAAAAGATTGG . 54.0 4.0 92.0 0.0 . 662 RASSF9 9182 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 86198974 86198974 + Nonsense_Mutation SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . RASSF9 NM_005447 exon2 c.C814T p.R272X TCAGTCGTTCTTC . 109.0 35.0 141.0 0.0 . 23 RBM47 54502 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 40434757 40434757 + Missense_Mutation SNP C C G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . RBM47 NM_001098634 exon6 c.G1453C p.D485H CTGGGTCTGGCTG . 168.0 129.0 247.0 1.0 . 25 RCN1 5954 hgsc.bcm.edu;bcgsc.ca 37 11 32125951 32125951 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . RCN1 NM_002901 exon6 c.A929G p.N310S ACTGGAACATGTT . 115.0 5.0 139.0 0.0 . 153 RDH8 50700 hgsc.bcm.edu;bcgsc.ca 37 19 10131464 10131464 + Silent SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . RDH8 NM_015725 exon4 c.G582A p.L194L GCTGCTGCAGTTC . 80.0 4.0 101.0 0.0 . 94 RGPD4 285190 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 108487607 108487607 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . RGPD4 NM_182588 exon20 c.A3147G p.E1049E AGTAGAACTTGTA . 124.0 47.0 137.0 0.0 . 2 RHPN2 85415 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 33498926 33498926 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . RHPN2 NM_033103 exon7 c.G754T p.A252S CTGCGGCTCTCTG . 159.0 60.0 118.0 0.0 . 516 RICTOR 253260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 38950476 38950476 + Missense_Mutation SNP T T A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . RICTOR NM_152756 exon31 c.A3474T p.Q1158H CTCTAATTGTAAT . 427.0 190.0 309.0 1.0 . 849 RNASE4 6038 hgsc.bcm.edu;bcgsc.ca 37 14 21167714 21167714 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . RNASE4 NM_002937 exon2 c.A184G p.M62V CGGAAGATGACTT . 55.0 4.0 89.0 0.0 . 514 RNF123 63891 hgsc.bcm.edu;bcgsc.ca 37 3 49735904 49735904 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . RNF123 NM_022064 exon8 c.C515T p.A172V CCTATGCCTATGA . 90.0 5.0 115.0 0.0 . 584 RNF128 79589 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 X 105970375 105970375 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . RNF128 NM_194463 exon1 c.G232T p.E78X CCGCTGGAGCCTG . 208.0 75.0 192.0 0.0 . 227 ROR2 4920 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 94495611 94495611 + Missense_Mutation SNP G G A rs148340413 byfrequency TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ROR2 NM_004560 exon6 c.C730T p.R244W GTGTCCGGGAGCG . 227.0 107.0 159.0 1.0 G|1.000;A|0.000 1471 RPGR 6103 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 38145015 38145015 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . RPGR NM_001034853 exon15 c.G3237T p.R1079S ATCCTGCCTTTCA . 745.0 365.0 834.0 1.0 . 131 RPS6KA3 6197 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 20181109 20181109 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . RPS6KA3 NM_004586 exon19 c.G1814A p.G605D AGGACACCAAGAC . 366.0 24.0 411.0 1.0 . 1504 RSL1D1 26156 hgsc.bcm.edu;bcgsc.ca 37 16 11935611 11935611 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . RSL1D1 NM_015659 exon7 c.T796C p.S266P CAAACGAGGAAAA . 122.0 5.0 135.0 0.0 . 90 SBNO1 55206 hgsc.bcm.edu;bcgsc.ca 37 12 123798234 123798234 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SBNO1 NM_001167856 exon23 c.A3153G p.K1051K AATGGATTTCATG . 68.0 4.0 66.0 0.0 . 292 SCEL 8796 hgsc.bcm.edu;bcgsc.ca 37 13 78130761 78130761 + Missense_Mutation SNP G G T rs200836262 alternate_allele TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SCEL NM_003843 exon3 c.G74T p.R25L CCACACGGAAGCA . 92.0 4.0 84.0 0.0 . 95 SCP2D1 140856 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 18794517 18794517 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_178483 exon1 c.G58T p.G20C CTGGTGGGCCAGT . 196.0 90.0 166.0 1.0 . . SEC24B 10427 hgsc.bcm.edu;bcgsc.ca 37 4 110453794 110453794 + Splice_Site SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SEC24B NM_006323 exon21 c.3391-1G>T . TTTTCAGGGTGCA . 49.0 4.0 85.0 0.0 . 137 SEC24D 9871 hgsc.bcm.edu;bcgsc.ca 37 4 119666159 119666159 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SEC24D NM_014822 exon14 c.A1764G p.E588E TGGTGCTTCAGCA . 170.0 7.0 252.0 0.0 . 90 SEL1L3 23231 hgsc.bcm.edu;bcgsc.ca 37 4 25849271 25849271 + Silent SNP G G T rs200467510 byfrequency;alternate_allele TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_015187 exon2 c.C378A p.P126P GTACACGGGAATG . 97.0 4.0 172.0 0.0 G|0.996;A|0.004 . SEMA6A 57556 hgsc.bcm.edu;bcgsc.ca 37 5 115823894 115823894 + Splice_Site SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SEMA6A NM_020796 exon10 c.656-2A>G . TGGTTCTGTAGAC . 139.0 6.0 126.0 0.0 . 92 SEPT3 55964 hgsc.bcm.edu;bcgsc.ca 37 22 42377812 42377812 + Silent SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SEPT3 NM_019106 exon2 c.C174A p.T58T GAAGACCGGTTTC . 72.0 6.0 83.0 0.0 . 68 SERPINE2 5270 hgsc.bcm.edu;bcgsc.ca 37 2 224856708 224856708 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SERPINE2 NM_001136530 exon4 c.A533G p.D178G AGATTGTCAATCA . 59.0 4.0 55.0 0.0 . 290 SETD3 84193 hgsc.bcm.edu;bcgsc.ca 37 14 99927679 99927679 + Splice_Site SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SETD3 NM_032233 exon5 c.197-2A>G . CAGACCTATATTA . 49.0 4.0 73.0 0.0 . 514 SEZ6L 23544 broad.mit.edu;bcgsc.ca;mdanderson.org 37 22 26690288 26690288 + Missense_Mutation SNP A A C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SEZ6L NM_021115 exon3 c.A866C p.E289A ATCCTGAGGGGTA . 105.0 8.0 168.0 1.0 . 95 SFI1 9814 hgsc.bcm.edu;bcgsc.ca 37 22 31969140 31969140 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SFI1 NM_001007467 exon9 c.A862G p.R288G AAACGGAGATTTC . 53.0 4.0 50.0 0.0 . 90 SHANK2 22941 hgsc.bcm.edu;bcgsc.ca 37 11 70336441 70336441 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SHANK2 NM_133266 exon8 c.A727G p.S243G TTGGGCTCCCAGG . 102.0 5.0 99.0 0.0 . 94 SHROOM1 134549 bcgsc.ca;mdanderson.org 37 5 132161730 132161730 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SHROOM1 NM_133456 exon1 c.T103C p.S35P AGAAAGAGCTGTA . 54.0 5.0 37.0 1.0 . 91 SHROOM3 57619 hgsc.bcm.edu;bcgsc.ca 37 4 77660862 77660862 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SHROOM3 NM_020859 exon5 c.T1536C p.A512A GATGGCTACCATT . 54.0 4.0 93.0 0.0 . 93 SIGIRR 59307 hgsc.bcm.edu;bcgsc.ca 37 11 407512 407512 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SIGIRR NM_021805 exon6 c.T538C p.F180L TCACGAACTTGCG . 167.0 7.0 132.0 0.0 . 90 SIRT6 51548 hgsc.bcm.edu;bcgsc.ca 37 19 4179153 4179153 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SIRT6 NM_016539 exon3 c.T325C p.F109L CCAGGAAGCGGAG . 93.0 5.0 67.0 0.0 . 227 SLC12A6 9990 hgsc.bcm.edu;bcgsc.ca 37 15 34547524 34547524 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SLC12A6 NM_133647 exon7 c.T815C p.F272S AGATAAAAGCAGA . 69.0 5.0 91.0 0.0 . 517 SLC14A1 6563 hgsc.bcm.edu;bcgsc.ca 37 18 43310402 43310402 + Silent SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SLC14A1 NM_001146037 exon2 c.C285A p.T95T TGTCACCGGTGAC . 97.0 5.0 99.0 0.0 . 515 SLC15A2 6565 hgsc.bcm.edu;bcgsc.ca 37 3 121647383 121647383 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SLC15A2 NM_021082 exon15 c.A1322G p.E441G TGATAGAGTCCAT . 100.0 6.0 126.0 0.0 . 91 SLC16A4 9122 hgsc.bcm.edu;bcgsc.ca 37 1 110918150 110918150 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SLC16A4 NM_004696 exon8 c.A1266G p.T422T GTTTACTGTAGAA . 85.0 5.0 169.0 0.0 . 93 SLC2A4RG 56731 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 62373570 62373570 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SLC2A4RG NM_020062 exon5 c.C667T p.L223L ATCCGCCTGGTGC . 137.0 62.0 126.0 0.0 . 90 SLC34A2 10568 hgsc.bcm.edu;bcgsc.ca 37 4 25664190 25664190 + Missense_Mutation SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SLC34A2 NM_001177998 exon2 c.G68A p.G23D CCGCAGGTCAGCA . 90.0 4.0 124.0 0.0 . 95 SLC37A1 54020 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 43979198 43979198 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SLC37A1 NM_018964 exon12 c.C980A p.P327Q AAATTCCAGTAAG . 51.0 5.0 37.0 0.0 . 90 SLC37A3 84255 hgsc.bcm.edu;bcgsc.ca 37 7 140069457 140069457 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SLC37A3 NM_207113 exon4 c.C224A p.P75H GCACTGGGGAACA . 47.0 4.0 44.0 0.0 . 93 SLC45A4 57210 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 142228278 142228278 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SLC45A4 NM_001080431 exon4 c.G1308T p.E436D CTCCCCCTCCTCA . 85.0 33.0 71.0 0.0 . 70 SLC5A2 6524 hgsc.bcm.edu;bcgsc.ca 37 16 31499986 31499986 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SLC5A2 NM_003041 exon10 c.G1173T p.M391I GCTCATGTCCTCG . 56.0 4.0 113.0 0.0 . 91 SLITRK1 114798 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 84453981 84453981 + Missense_Mutation SNP G G C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SLITRK1 NM_052910 exon1 c.C1662G p.S554R GAGGTCGCTCATC . 108.0 66.0 107.0 1.0 . 94 SMEK1 55671 hgsc.bcm.edu;bcgsc.ca 37 14 91937188 91937188 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SMEK1 NM_032560 exon11 c.G1614T p.L538F TAATGCCAAGAAA . 93.0 4.0 142.0 0.0 . 226 SMPD2 6610 hgsc.bcm.edu;bcgsc.ca 37 6 109764241 109764241 + Missense_Mutation SNP A A G rs145532915 byfrequency;alternate_allele TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SMPD2 NM_003080 exon8 c.A686G p.K229R AGCTGAAGCCATT . 124.0 6.0 105.0 0.0 A|0.999;T|0.001 90 SNAI1 6615 hgsc.bcm.edu;bcgsc.ca 37 20 48600493 48600493 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SNAI1 NM_005985 exon2 c.T215C p.I72T AGCCAATTGCCTG . 86.0 5.0 72.0 0.0 . 227 SNAP29 9342 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 21235375 21235375 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SNAP29 NM_004782 exon3 c.C473T p.A158V AGGAAGCAAAGTA . 153.0 107.0 209.0 1.0 . 278 SNX15 29907 hgsc.bcm.edu;bcgsc.ca 37 11 64802421 64802421 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SNX15 NM_147777 exon4 c.A359G p.K120R AGCTCAAGGAGTT . 105.0 5.0 89.0 0.0 . 227 SOX3 6658 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 139587141 139587141 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SOX3 NM_005634 exon1 c.C85A p.P29T GGAAGGGTAGGCT . 125.0 31.0 126.0 0.0 . 1083 SPACA1 81833 hgsc.bcm.edu;bcgsc.ca 37 6 88768538 88768538 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SPACA1 NM_030960 exon4 c.C472A p.Q158K CAAGACCAAGTGA . 89.0 5.0 91.0 0.0 . 90 SPAG17 200162 hgsc.bcm.edu;bcgsc.ca 37 1 118550817 118550817 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SPAG17 NM_206996 exon31 c.G4437T p.E1479D AGGACCCTCGGCT . 77.0 4.0 78.0 0.0 . 158 SPATA19 219938 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 133714476 133714476 + Missense_Mutation SNP C C G rs138068697 alternate_allele TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SPATA19 NM_174927 exon3 c.G195C p.Q65H TACACCCTGGGAA . 178.0 110.0 225.0 0.0 C|1.000;T|0.000 90 SPATA7 55812 hgsc.bcm.edu;bcgsc.ca 37 14 88892683 88892683 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SPATA7 NM_018418 exon6 c.T480C p.S160S CCTAAGTCTACAT . 76.0 4.0 92.0 0.0 . 91 SPECC1 92521 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 20163561 20163561 + Missense_Mutation SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SPECC1 NM_001033553 exon12 c.G2894A p.R965H CCAAGCGCAATGC . 136.0 60.0 118.0 0.0 . 639 SPESP1 246777 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 15 69238897 69238897 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SPESP1 NM_145658 exon2 c.A1024G p.R342G TCAAGGAGAGTCA . 38.0 4.0 41.0 0.0 . 90 SPG7 6687 hgsc.bcm.edu;bcgsc.ca 37 16 89616941 89616941 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SPG7 NM_003119 exon13 c.A1703G p.Q568R AAGAACAGAAAGT . 78.0 4.0 100.0 0.0 . 226 SPTB 6710 hgsc.bcm.edu;bcgsc.ca 37 14 65252316 65252316 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SPTB NM_001024858 exon17 c.A3794G p.E1265G GAGGCCTCCTGGG . 62.0 4.0 56.0 0.0 . 100 SPTBN2 6712 hgsc.bcm.edu;bcgsc.ca 37 11 66468660 66468660 + Silent SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SPTBN2 NM_006946 exon16 c.C2910A p.T970T GGCCTGGGTCTCC . 119.0 6.0 112.0 0.0 . 155 SRFBP1 153443 hgsc.bcm.edu;bcgsc.ca 37 5 121309963 121309963 + Silent SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SRFBP1 NM_152546 exon2 c.C109A p.R37R GTTGGCCGACTGA . 115.0 5.0 135.0 0.0 . 90 SRSF2 6427 hgsc.bcm.edu;bcgsc.ca 37 17 74732955 74732955 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SRSF2 NM_001195427 exon1 c.G288A p.P96P TGAGTCCGGGGGG . 38.0 4.0 33.0 0.0 . 226 SSTR2 6752 hgsc.bcm.edu;bcgsc.ca 37 17 71166524 71166524 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SSTR2 NM_001050 exon2 c.A1066G p.T356A ACGGAGACCCAGA . 86.0 5.0 73.0 0.0 . 522 STAT5A 6776 hgsc.bcm.edu;bcgsc.ca 37 17 40460208 40460208 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . STAT5A NM_003152 exon17 c.T1919C p.L640P GCAACCTGTGGAA . 149.0 6.0 144.0 0.0 . 846 SUMF1 285362 hgsc.bcm.edu;bcgsc.ca 37 3 4458810 4458810 + Splice_Site SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SUMF1 NM_001164674 exon6 c.765+2T>C . TTACTCACAGGCG . 77.0 4.0 83.0 0.0 . 91 SVEP1 79987 hgsc.bcm.edu;bcgsc.ca 37 9 113169106 113169106 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SVEP1 NM_153366 exon38 c.G8774A p.G2925D GGAGCACCGTGCA . 81.0 4.0 70.0 0.0 . 75 SYT10 341359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 33579155 33579155 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . SYT10 NM_198992 exon2 c.G427A p.E143K GGACTTCTGCTGG . 621.0 234.0 675.0 2.0 . 92 TACC2 10579 hgsc.bcm.edu;bcgsc.ca 37 10 123848021 123848021 + Silent SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TACC2 NM_206862 exon5 c.T5488C p.L1830L TCCATGTTACCTT . 143.0 6.0 100.0 0.0 . 296 TARBP2 6895 hgsc.bcm.edu;bcgsc.ca 37 12 53899518 53899518 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TARBP2 NM_134323 exon8 c.T827C p.I276T AGAAGATCCTGTC . 61.0 4.0 46.0 0.0 . 226 TBCK 93627 hgsc.bcm.edu;bcgsc.ca 37 4 107154107 107154107 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TBCK NM_001163436 exon17 c.G1627A p.V543M AATACACAAGATC . 87.0 4.0 195.0 0.0 . 336 TCP11L2 255394 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 106740125 106740125 + Missense_Mutation SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TCP11L2 NM_152772 exon10 c.G1377A p.M459I ATGCATGCCTCCT . 108.0 42.0 127.0 0.0 . 93 TENM4 26011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 78437179 78437179 + Silent SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_001098816 exon23 c.G3495T p.A1165A CTTGGACGCGTCA . 372.0 138.0 431.0 0.0 . . TFAP2D 83741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 50740456 50740456 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TFAP2D NM_172238 exon8 c.C1238T p.T413I AACACACTACTCA . 120.0 43.0 85.0 0.0 . 159 TFR2 7036 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 7 100226878 100226878 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TFR2 NM_003227 exon10 c.A1388G p.N463S TTACCGTTGCTCA . 30.0 4.0 62.0 0.0 . 92 TH 7054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 2190970 2190970 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TH NM_199292 exon3 c.G315A p.E105E CTTCTCCTCAAAG . 155.0 86.0 197.0 0.0 . 90 THBS1 7057 hgsc.bcm.edu;bcgsc.ca 37 15 39886569 39886569 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . THBS1 NM_003246 exon21 c.G3433T p.G1145C TATGCTGGTGGTA . 98.0 4.0 106.0 0.0 . 653 TK2 7084 hgsc.bcm.edu;bcgsc.ca 37 16 66575828 66575828 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TK2 NM_001172645 exon3 c.G185T p.G62V GTCTTCCCACTTG . 53.0 4.0 84.0 0.0 . 115 TOP2A 7153 hgsc.bcm.edu;bcgsc.ca 37 17 38561112 38561112 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TOP2A NM_001067 exon17 c.T1977C p.D659D TCGATCATCTATC . 68.0 4.0 68.0 0.0 . 655 TPO 7173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 1440156 1440156 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TPO NM_175719 exon5 c.G482T p.R161I ACAACAGGTATTG . 105.0 58.0 119.0 0.0 . 332 TROAP 10024 hgsc.bcm.edu;bcgsc.ca 37 12 49725141 49725141 + Missense_Mutation SNP G G T rs200487146 alternate_allele TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TROAP NM_005480 exon14 c.G2243T p.R748L CCACCCGGGTCTG . 123.0 5.0 97.0 0.0 G|0.999;A|0.001 91 TRPM3 80036 hgsc.bcm.edu;bcgsc.ca 37 9 73235023 73235023 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TRPM3 NM_001007471 exon15 c.G2062T p.D688Y AAATGTCGTCAAC . 82.0 4.0 73.0 0.0 . 521 TRRAP 8295 hgsc.bcm.edu;bcgsc.ca 37 7 98545947 98545947 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TRRAP NM_001244580 exon33 c.G4631T p.R1544L CGGAGCGGGCGAT . 99.0 4.0 112.0 0.0 . 923 TSPEAR 54084 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 45953608 45953608 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TSPEAR NM_144991 exon3 c.G502A p.V168I AGAAGACGCCTGC . 188.0 74.0 124.0 0.0 . 244 TTC39A 22996 hgsc.bcm.edu;bcgsc.ca 37 1 51767296 51767296 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TTC39A NM_001144832 exon12 c.A1013G p.K338R GACATCTTCCACT . 44.0 4.0 100.0 0.0 . 23 TTC39C 125488 hgsc.bcm.edu;bcgsc.ca 37 18 21660556 21660556 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TTC39C NM_001135993 exon5 c.C468T p.I156I TTATATCAAAGGT . 83.0 4.0 75.0 0.0 . 91 TWSG1 57045 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 18 9337333 9337333 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TWSG1 NM_020648 exon2 c.A106G p.S36G GATGTGAGCAAAT . 44.0 4.0 35.0 0.0 . 92 TYK2 7297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10476357 10476357 + Silent SNP G G A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . TYK2 NM_003331 exon7 c.C847T p.L283L GGGCCAGCAGCCT . 93.0 45.0 93.0 0.0 . 1009 UBA6 55236 hgsc.bcm.edu;bcgsc.ca 37 4 68534270 68534270 + Silent SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . UBA6 NM_018227 exon9 c.G792T p.T264T CTTACCCGTTATT . 114.0 5.0 153.0 0.0 . 90 UBP1 7342 hgsc.bcm.edu;bcgsc.ca 37 3 33444345 33444345 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . UBP1 NM_014517 exon9 c.C979A p.P327T GCGCTGGGGAAGG . 173.0 7.0 184.0 0.0 . 537 ULK4 54986 hgsc.bcm.edu;bcgsc.ca 37 3 41860960 41860960 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ULK4 NM_017886 exon19 c.T1803C p.V601V CAAGGGAACAGCC . 60.0 4.0 67.0 0.0 . 297 UPF1 5976 hgsc.bcm.edu;bcgsc.ca 37 19 18963017 18963017 + Missense_Mutation SNP G G T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . UPF1 NM_002911 exon6 c.G884T p.R295L TCCTGCGGTACGA . 117.0 5.0 121.0 0.0 . 91 USP36 57602 hgsc.bcm.edu;bcgsc.ca 37 17 76810529 76810529 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . USP36 NM_025090 exon11 c.A1129G p.S377G GGCAGCTGTAGCC . 96.0 4.0 83.0 0.0 . 659 USP48 84196 hgsc.bcm.edu;bcgsc.ca 37 1 22084236 22084236 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . USP48 NM_001032730 exon2 c.G175T p.G59C GCTCACCAATACC . 78.0 5.0 104.0 0.0 . 659 VCAN 1462 hgsc.bcm.edu;bcgsc.ca 37 5 82849183 82849183 + Missense_Mutation SNP A A G rs13184139 alternate_allele TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . VCAN NM_004385 exon11 c.A9494G p.D3165G TCTCAGATACCGA . 59.0 4.0 52.0 0.0 A|1.000;|0.000 238 VPRBP 9730 hgsc.bcm.edu;bcgsc.ca 37 3 51456168 51456168 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . VPRBP NM_014703 exon15 c.T3240C p.C1080C GTTGTGACAGTTA . 90.0 4.0 94.0 0.0 . 92 VPS13B 157680 hgsc.bcm.edu;bcgsc.ca 37 8 100654256 100654256 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . VPS13B NM_017890 exon34 c.A5513G p.D1838G CCTTTGACATATT . 64.0 4.0 51.0 0.0 . 301 WEE2 494551 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 7 141414139 141414139 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . WEE2 NM_001105558 exon2 c.T473C p.F158S ATCCCTTCACTCC . 43.0 4.0 83.0 0.0 . 305 WLS 79971 hgsc.bcm.edu;bcgsc.ca 37 1 68610266 68610266 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . WLS NM_024911 exon10 c.T1348C p.F450L CGATGAAGAAGAT . 62.0 4.0 111.0 0.0 . 90 XAB2 56949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 7691045 7691045 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . XAB2 NM_020196 exon5 c.A634G p.K212E CGGCCTTAGACAC . 101.0 41.0 90.0 0.0 . 272 XPO5 57510 hgsc.bcm.edu;bcgsc.ca 37 6 43515423 43515423 + Silent SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . XPO5 NM_020750 exon19 c.T2082C p.A694A AATGAAAGCATCA . 103.0 5.0 85.0 0.0 . 271 YPEL4 219539 hgsc.bcm.edu;bcgsc.ca 37 11 57413467 57413467 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . YPEL4 NM_145008 exon5 c.A371G p.N124S CAGCCGTTGTCCT . 75.0 4.0 64.0 0.0 . 90 ZC3H12C 85463 hgsc.bcm.edu;bcgsc.ca 37 11 110035709 110035709 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ZC3H12C NM_033390 exon6 c.C1899T p.S633S CATGAGCTGTGGG . 55.0 4.0 74.0 0.0 . 68 ZC3HAV1L 92092 hgsc.bcm.edu;bcgsc.ca 37 7 138719329 138719329 + Missense_Mutation SNP C C A novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ZC3HAV1L NM_080660 exon2 c.G461T p.R154L AGGATCCGAAGCT . 80.0 4.0 93.0 0.0 . 90 ZFHX3 463 hgsc.bcm.edu;broad.mit.edu 37 16 72992020 72992020 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ZFHX3 NM_006885 exon2 c.G2025A p.K675K GTTGCACTTGGGG . 39.0 4.0 41.0 0.0 . 72 ZMYM3 9203 hgsc.bcm.edu;bcgsc.ca 37 X 70465850 70465850 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ZMYM3 NM_005096 exon16 c.T2671C p.S891P GCATCGAGAAAGG . 89.0 4.0 96.0 0.0 . 131 ZNF10 7556 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 133727625 133727625 + Silent SNP C C G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ZNF10 NM_015394 exon3 c.C45G p.T15T GGTGACCTTCAAG . 208.0 84.0 206.0 0.0 . 154 ZNF20 7568 hgsc.bcm.edu;bcgsc.ca 37 19 12243683 12243683 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ZNF20 NM_021143 exon4 c.A1318G p.I440V CATGTATATGCAA . 89.0 4.0 75.0 0.0 . 22 ZNF223 7766 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 44570978 44570978 + Nonsense_Mutation SNP A A T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ZNF223 NM_013361 exon5 c.A997T p.K333X TTGTGTAAGCATC . 135.0 52.0 103.0 0.0 . 91 ZNF225 7768 hgsc.bcm.edu;bcgsc.ca 37 19 44635250 44635250 + Silent SNP C C A rs201221735 alternate_allele TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . NM_013362 exon5 c.C483A p.S161S TGTCTCCGTCCTT . 121.0 5.0 103.0 0.0 C|0.999;T|0.000 . ZNF311 282890 hgsc.bcm.edu;bcgsc.ca 37 6 28967374 28967374 + Missense_Mutation SNP T T C novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ZNF311 NM_001010877 exon5 c.A200G p.E67G ACATCCTCAAATG . 91.0 4.0 84.0 0.0 . 22 ZNF333 84449 hgsc.bcm.edu;bcgsc.ca 37 19 14815924 14815924 + Missense_Mutation SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ZNF333 NM_032433 exon6 c.C365T p.P122L AGACACCATTGAC . 72.0 4.0 90.0 0.0 . 92 ZNF610 162963 hgsc.bcm.edu;bcgsc.ca 37 19 52856964 52856964 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 ZNF610,NS,carcinoma,0 ZNF610 NM_001161427 exon4 c.C93T p.I31I GGCCATCGAATTC . 73.0 4.0 66.0 0.0 . 93 ZNF646 9726 hgsc.bcm.edu;bcgsc.ca 37 16 31088245 31088245 + Silent SNP C C T novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ZNF646 NM_014699 exon2 c.C600T p.P200P TCTCCCCATCCCA . 71.0 6.0 91.0 0.0 . 153 ZNF655 79027 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 99170201 99170201 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ZNF655 NM_001085368 exon4 c.A575G p.D192G ATACCGATGACAA . 44.0 5.0 60.0 0.0 . 91 ZNF710 374655 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 90610374 90610374 + Missense_Mutation SNP A A G novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . ZNF710 NM_198526 exon2 c.A5G p.E2G GGATGGAGGGCTT . 86.0 42.0 104.0 0.0 . 90 ZSWIM6 57688 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 60628300 60628301 + Missense_Mutation DNP GC GC TT novel TCGA-EP-A2KB-01A-11D-A183-10 TCGA-EP-A2KB-10A-01D-A183-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 305a5074-5384-45a0-985d-289b178d09f6 87df7481-7da6-412b-9452-d7ce62844ef4 . . . . . p.P68S GCTGCCGCCGGGC . 25.0 17.0 18.0 0.0 . .