Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AANAT	15	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74465363	74465363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	AANAT	NM_001166579	exon6	c.T407A	p.V136E	GCCTTGTGGCCTT	.	50.0	19.0	133.0	0.0	.	90
ACAD8	27034	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134131672	134131672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ACAD8	NM_014384	exon9	c.T980C	p.V327A	GGCTGGTGGCCGC	.	29.0	11.0	145.0	0.0	.	90
ACCSL	390110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	44072129	44072129	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ACCSL	NM_001031854	exon3	c.G592T	p.E198X	TGCATTGAGGACA	.	63.0	27.0	217.0	0.0	.	95
ALB	213	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74284003	74284003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ALB	NM_000477	exon12	c.A1627G	p.K543E	TCTGAGAAGGAGA	.	21.0	8.0	80.0	1.0	.	96
ASIC4	55515	broad.mit.edu;ucsc.edu	37	2	220379297	220379297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_182847	exon1	c.G232A	p.G78S	ACCTCGGGCCCCC	.	48.0	4.0	182.0	0.0	.	.
ASS1	445	ucsc.edu;bcgsc.ca	37	9	133333853	133333853	+	Missense_Mutation	SNP	C	C	A	rs147910468	byfrequency;alternate_allele	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ASS1	NM_054012	exon4	c.C240A	p.S80R	GTCCAGCGCACTG	.	31.0	4.0	94.0	0.0	C|1.000;T|0.000	91
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193174846	193174846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ATP13A4	NM_032279	exon16	c.C1858A	p.L620M	ATGCCAGTCGGTC	.	62.0	22.0	168.0	0.0	.	92
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99021404	99021404	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_001198879	exon8	c.T2061C	p.F687F	CCGGTCAAAGGTG	.	66.0	25.0	132.0	0.0	.	.
AXDND1	126859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179339142	179339142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	AXDND1	NM_144696	exon4	c.G303T	p.W101C	TGTCTGGCATCAC	.	69.0	50.0	129.0	0.0	.	93
BCL6	604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	187447378	187447378	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	BCL6	NM_001134738	exon4	c.A815T	p.D272V	TGCATATCACTTC	.	37.0	10.0	121.0	0.0	.	848
BCL6	604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	187447392	187447392	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	BCL6	NM_001134738	exon4	c.A801G	p.E267E	TGCCTCTTCTGGG	.	41.0	11.0	121.0	0.0	.	848
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1466531	1466531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	BRSK2	NM_001256630	exon10	c.A958G	p.K320E	GGGGGCAAGAATG	.	33.0	19.0	137.0	0.0	.	333
CACNA2D1	781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	81588622	81588622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CACNA2D1	NM_000722	exon38	c.G3128A	p.G1043E	TCAGGCCCTTTTC	.	39.0	5.0	88.0	0.0	.	96
CAD	790	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27460320	27460320	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CAD	NM_004341	exon28	c.C4470T	p.A1490A	CACAGCCGCTGCC	.	59.0	14.0	205.0	2.0	.	295
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157805798	157805798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CD5L	NM_005894	exon3	c.G203T	p.G68V	GCAGCTCCACAGC	.	82.0	49.0	244.0	1.0	.	91
COL4A5	1287	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107834316	107834316	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	COL4A5	NM_000495	exon20	c.T1194C	p.P398P	TGGCCCTCCTGGA	.	37.0	26.0	124.0	1.0	.	133
CPNE8	144402	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	39161460	39161460	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CPNE8	NM_153634	exon8	c.T552A	p.F184L	TCGATAAAATACA	.	31.0	6.0	123.0	0.0	.	91
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	bycluster	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95G	p.D32G	ACCTGGACTCTGG	.	117.0	18.0	347.0	2.0	.	24361
CYP2C8	1558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96802834	96802834	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	CYP2C8	NM_000770	exon7	c.C962G	p.A321G	ACTTTAGCTGACA	.	39.0	14.0	163.0	0.0	.	90
DAG1	1605	ucsc.edu;bcgsc.ca	37	3	49569129	49569129	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DAG1	NM_001177642	exon4	c.C1185T	p.T395T	TGGCACCACAGTT	.	42.0	6.0	138.0	0.0	.	92
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52428551	52428551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DNAH1	NM_015512	exon67	c.T10697C	p.L3566P	ACTGGCTGTCAGA	.	86.0	28.0	228.0	0.0	.	67
DNAH14	127602	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225586911	225586911	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DNAH14	NM_001373	exon84	c.A13488G	p.K4496K	GAAGAAACCTCCT	.	53.0	10.0	127.0	0.0	.	23
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196729549	196729549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DNAH7	NM_018897	exon41	c.A6830G	p.K2277R	TCCCTCTTGGGAT	.	48.0	5.0	202.0	0.0	.	102
DNAJB4	11080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	78481825	78481825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DNAJB4	NM_007034	exon3	c.A908G	p.N303S	CAAAAAATCCTGA	.	42.0	12.0	94.0	0.0	.	226
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62971484	62971484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	DOCK7	NM_001271999	exon36	c.G4453A	p.V1485I	CAGAAACGGTCTG	.	20.0	6.0	69.0	0.0	.	92
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139202242	139202242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ECT2L	NM_001195037	exon14	c.C1814T	p.A605V	ACAGAGCGATTCT	.	62.0	17.0	106.0	0.0	.	22
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184290761	184290761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	EPHB3	NM_004443	exon3	c.G653T	p.G218V	CCGCAGGCTTCGC	.	34.0	16.0	93.0	0.0	.	1455
EVI2B	2124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	29632211	29632211	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	EVI2B	NM_006495	exon2	c.A417G	p.P139P	TGACTTTGGTGGT	.	292.0	23.0	617.0	0.0	.	92
FARP1	10160	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99037964	99037964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FARP1	NM_005766	exon8	c.G655T	p.A219S	GAGATTGCCCGTC	.	22.0	7.0	55.0	0.0	.	290
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48802359	48802359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FBN1	NM_000138	exon14	c.T1596G	p.D532E	ACACTCATCAATG	.	52.0	21.0	167.0	0.0	.	92
FKBP11	51303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49317594	49317594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FKBP11	NM_016594	exon5	c.G359A	p.G120E	CGTTTTCCATAGG	.	65.0	13.0	196.0	0.0	.	226
FRA10AC1	118924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	95436450	95436450	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	FRA10AC1	NM_145246	exon13	c.788-2A>G	.	ATGTCCTGAAAAG	.	87.0	45.0	237.0	1.0	.	90
GLTSCR1	29998	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	48204844	48204844	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	GLTSCR1	NM_015711	exon15	c.G3855A	p.E1285E	CGACGAGGACGGC	.	13.0	6.0	60.0	0.0	.	48
GOSR2	9570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45000561	45000561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	GOSR2	NM_001012511	exon1	c.G3A	p.M1I	CGACATGGATCCC	.	64.0	19.0	210.0	0.0	.	92
HIST1H2BK	85236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27114511	27114511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	HIST1H2BK	NM_080593	exon1	c.C67A	p.Q23K	TCTTCTGCGCCTT	.	84.0	40.0	201.0	1.0	.	68
KALRN	8997	ucsc.edu;bcgsc.ca	37	3	124209558	124209558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KALRN	NM_003947	exon30	c.G4408A	p.D1470N	AACCTGGATGTGC	.	24.0	4.0	64.0	0.0	.	738
KCNB2	9312	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73480262	73480262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KCNB2	NM_004770	exon2	c.C293A	p.S98Y	TCACTTCCATTTT	.	63.0	8.0	114.0	0.0	.	158
KCNK12	56660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	47748598	47748598	+	Silent	SNP	G	G	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KCNK12	NM_022055	exon2	c.C741G	p.L247L	GAAGTAGAGCGAG	.	31.0	11.0	110.0	0.0	.	91
KCNK5	8645	ucsc.edu;bcgsc.ca	37	6	39159107	39159107	+	Silent	SNP	G	G	T	rs146316205	byfrequency;alternate_allele	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KCNK5	NM_003740	exon5	c.C1059A	p.P353P	CAAGGTGGGCACC	.	34.0	5.0	85.0	0.0	G|1.000;A|0.000	227
KIDINS220	57498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	8934018	8934018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	KIDINS220	NM_020738	exon12	c.C1198T	p.P400S	TGTTGGGCCTATA	.	24.0	12.0	62.0	0.0	.	93
KRTAP29-1	100533177	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39458417	39458417	+	Silent	SNP	C	C	T	rs201973633		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_001257309	exon1	c.G687A	p.S229S	ACAAGTCGATGGC	.	44.0	12.0	130.0	0.0	C|0.998;T|0.002	.
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7017348	7017348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LAMA1	NM_005559	exon20	c.G2737T	p.V913L	GGCACACGGCAGA	.	21.0	11.0	91.0	0.0	.	149
LEMD3	23592	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	65563533	65563533	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LEMD3	NM_001167614	exon1	c.C157G	p.Q53E	CAGCAACAGCACC	.	24.0	5.0	79.0	0.0	.	516
LOXHD1	125336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	44089715	44089715	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_144612	exon34	c.5277delG	p.K1759fs	CCGCATCTTGGTG	.	46.0	18.0	171.0	0.0	.	.
LPHN2	23266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	82409304	82409304	+	Missense_Mutation	SNP	G	G	A	rs139129579	byfrequency	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LPHN2	NM_012302	exon5	c.G1049A	p.R350Q	TAAACCGAGGAGA	.	27.0	13.0	164.0	0.0	G|1.000;A|0.000	525
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	133812144	133812144	+	Silent	SNP	C	C	T	rs199883304		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LRGUK	NM_144648	exon1	c.C24T	p.L8L	GGCTCTCCTGAGG	.	37.0	10.0	69.0	0.0	C|0.999;T|0.000	227
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	170147487	170147487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LRP2	NM_004525	exon8	c.C790T	p.H264Y	ATTTATGAACATC	.	51.0	14.0	186.0	0.0	.	175
LRRC39	127495	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100623869	100623869	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	LRRC39	NM_144620	exon6	c.T431A	p.V144D	TTGGGGACAGTCT	.	40.0	22.0	164.0	1.0	.	93
MCTP2	55784	ucsc.edu;bcgsc.ca;mdanderson.org	37	15	94841767	94841767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MCTP2	NM_001159643	exon1	c.C273A	p.S91R	CAAGAGCAGCAGT	.	16.0	4.0	44.0	0.0	.	93
MFSD6	54842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	191301480	191301501	+	Frame_Shift_Del	DEL	TGAACTCAAGCACAGCAACCCC	TGAACTCAAGCACAGCAACCCC	-	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	TGAACTCAAGCACAGCAACCCC	TGAACTCAAGCACAGCAACCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MFSD6	NM_017694	exon3	c.725_746del	p.242_249del	TGACTTTGAACTC	.	23.0	8.0	163.0	0.0	.	92
MID1IP1	58526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	38664209	38664209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MID1IP1	NM_021242	exon2	c.A10G	p.I4V	ATGCAAATCTGCG	.	49.0	39.0	183.0	0.0	.	130
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11316988	11316988	+	Splice_Site	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	MTOR	NM_004958	exon5	c.504+2T>A	.	ACACTCACAGCTG	.	28.0	19.0	79.0	0.0	.	1439
NAPEPLD	222236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102760530	102760530	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NAPEPLD	NM_001122838	exon3	c.C435T	p.L145L	ATCCGTGAGAAAT	.	56.0	35.0	169.0	0.0	.	227
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155776225	155776225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NOX3	NM_015718	exon2	c.C87A	p.D29E	GAACGTGTCAATA	.	101.0	52.0	199.0	0.0	.	91
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	84498384	84498384	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NRG3	NM_001165972	exon3	c.T1005C	p.T335T	GAAAACTGATTCC	.	68.0	21.0	158.0	0.0	.	522
NRG3	10718	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	84745054	84745054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NRG3	NM_001010848	exon9	c.T1784C	p.V595A	CTGAAGTCAAAAG	.	30.0	6.0	120.0	0.0	.	522
NSFL1C	55968	broad.mit.edu;ucsc.edu	37	20	1433676	1433676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NSFL1C	NM_016143	exon6	c.G647T	p.G216V	ACTCACCCTCTGC	.	41.0	4.0	71.0	0.0	.	90
NXF1	10482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62560160	62560160	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	NXF1	NM_006362	exon20	c.A1774T	p.N592Y	AGTTGTTGTCCTG	.	53.0	16.0	177.0	0.0	.	228
OAT	4942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	126092375	126092375	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	OAT	NM_000274	exon6	c.A763T	p.R255W	GGTGCCTGGTGCA	.	41.0	12.0	152.0	0.0	.	68
OR8D2	283160	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124189177	124189177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	OR8D2	NM_001002918	exon1	c.G917T	p.R306M	CTTCCCCTAGTCA	.	34.0	9.0	70.0	0.0	.	113
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	9546904	9546904	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PAK7	NM_177990	exon5	c.A1118T	p.Y373F	GACGGGTACTGGT	.	20.0	9.0	52.0	0.0	.	1434
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140215321	140215321	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PCDHA7	NM_031852	exon1	c.C1353T	p.N451N	CGACAACGCCCCG	.	113.0	55.0	379.0	0.0	.	94
PCED1A	64773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2819099	2819099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	NM_022760	exon6	c.G620T	p.R207L	TCCCGCCGCAGGG	.	23.0	11.0	78.0	0.0	.	.
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82581541	82581541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PCLO	NM_014510	exon5	c.G8728A	p.V2910I	TTGTTACGACTGT	.	37.0	24.0	81.0	0.0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82784846	82784846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PCLO	NM_014510	exon2	c.C1111A	p.P371T	CTGGAGGCTTAGC	.	117.0	16.0	251.0	0.0	.	29
PHKG2	5261	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	30768227	30768227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PHKG2	NM_001172432	exon10	c.C1030T	p.R344W	GCGCTGCGGTCAG	.	13.0	3.0	57.0	0.0	.	334
PLB1	151056	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	28812636	28812636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PLB1	NM_153021	exon28	c.T2015C	p.M672T	ACAATATGGTAAG	.	21.0	8.0	50.0	0.0	.	141
POC1A	25886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52179895	52179895	+	Missense_Mutation	SNP	C	C	T	rs139462706	byfrequency	TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	POC1A	NM_015426	exon6	c.G646A	p.V216M	TCCGCACGTCCCA	.	36.0	10.0	56.0	0.0	C|0.999;T|0.001	90
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	113519408	113519408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	PPP1R3A,NS,carcinoma,0	PPP1R3A	NM_002711	exon4	c.A1739G	p.D580G	GACACATCTGCTG	.	83.0	48.0	228.0	0.0	.	832
PRPF4	9128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116049016	116049016	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PRPF4	NM_004697	exon9	c.C843T	p.F281F	TGTATTCCATCCC	.	37.0	10.0	145.0	0.0	.	93
PSG1	5669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43382065	43382065	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	PSG1	NM_001184826	exon2	c.C430T	p.L144L	ACTTACGGTGTAA	.	46.0	10.0	182.0	0.0	.	70
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109695030	109695030	+	Silent	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RGAG1	NM_020769	exon3	c.T1185A	p.S395S	AGCCTCTGGGGTG	.	17.0	12.0	57.0	0.0	.	132
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78328357	78328357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RNF213	NM_001256071	exon36	c.C10843A	p.Q3615K	GCTCTCCAGGAGG	.	41.0	9.0	73.0	0.0	.	577
RNF220	55182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	45111114	45111114	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RNF220	NM_018150	exon12	c.A1399T	p.K467X	AGCAGCAAGCAGG	.	29.0	14.0	148.0	0.0	.	228
RPS2	6187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2013233	2013233	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RPS2	NM_002952	exon4	c.C292T	p.L98L	CCCCCAGGAAGAA	.	34.0	14.0	129.0	0.0	.	90
RUNX3	864	ucsc.edu;bcgsc.ca	37	1	25291022	25291022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	RUNX3	NM_001031680	exon1	c.C41T	p.S14L	GTCGGCGAGTAGG	.	29.0	4.0	65.0	0.0	.	414
SGCZ	137868	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	13959983	13959983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SGCZ	NM_139167	exon7	c.A646G	p.I216V	CCATGATCAAGGA	.	13.0	8.0	62.0	0.0	.	93
SIPA1L3	23094	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38694768	38694768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SIPA1L3	NM_015073	exon21	c.G5122A	p.E1708K	TCCAGCGAGGAGC	.	18.0	6.0	46.0	0.0	.	91
SKAP2	8935	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	26779584	26779584	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SKAP2	NM_003930	exon6	c.308-1G>A	.	GGGCTCCTATGAG	.	24.0	6.0	43.0	0.0	.	91
SLC1A5	6510	broad.mit.edu;ucsc.edu	37	19	47280545	47280545	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SLC1A5	NM_005628	exon6	c.C1176T	p.L392L	CTGGAAGAGCGCG	.	25.0	5.0	98.0	0.0	.	90
SLC2A10	81031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45354541	45354541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SLC2A10	NM_030777	exon2	c.G866A	p.G289E	CCATGGGGCTGGT	.	25.0	12.0	118.0	0.0	.	91
SMARCAL1	50485	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217280006	217280006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SMARCAL1	NM_014140	exon3	c.G579C	p.K193N	GGCCAAGACAGCA	.	35.0	8.0	116.0	0.0	.	293
SMCR7	125170	ucsc.edu;bcgsc.ca	37	17	18166172	18166172	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SMCR7	NM_148886	exon2	c.C171T	p.A57A	CCTGGCCGTGAAG	.	12.0	4.0	78.0	0.0	.	90
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	26912926	26912926	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SPAG5	NM_006461	exon7	c.G1696T	p.E566X	TTGCCTCCTCCCT	.	71.0	19.0	206.0	0.0	.	90
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228883534	228883534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	SPHKAP	NM_030623	exon7	c.C2036T	p.S679F	TCAATGGAATGCC	.	63.0	22.0	194.0	0.0	.	167
TAP1	6890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32816536	32816536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TAP1	NM_000593	exon7	c.C1639T	p.R547C	GGCAGCGAGGGGT	.	37.0	8.0	94.0	0.0	.	91
TCN1	6947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	59620709	59620709	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TCN1	NM_001062	exon8	c.G1207T	p.E403X	GAAGTTCCCAGTA	.	70.0	8.0	198.0	0.0	.	92
TMEM67	91147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	94800156	94800156	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TMEM67	NM_153704	exon14	c.T1497C	p.D499D	CAAAGATGCCAAC	.	95.0	31.0	147.0	0.0	.	92
TNF	7124	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31544935	31544935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TNF	NM_000594	exon4	c.G323A	p.R108Q	ACCGCCGGGCCAA	.	25.0	5.0	66.0	0.0	.	1085
TP53I11	9537	ucsc.edu;bcgsc.ca	37	11	44959105	44959105	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TP53I11	NM_001258323	exon5	c.188+1G>T	.	TGCTCACCTGAGC	.	48.0	5.0	222.0	0.0	.	227
TPH2	121278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72388234	72388234	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TPH2	NM_173353	exon8	c.A957G	p.E319E	CCATGAACTCTTG	.	41.0	13.0	142.0	0.0	.	93
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230723949	230723949	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TRIP12	NM_004238	exon3	c.A440T	p.Q147L	CTTTTCTGACTCC	.	50.0	21.0	101.0	0.0	.	572
TUBGCP4	27229	ucsc.edu;bcgsc.ca	37	15	43675659	43675659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	TUBGCP4	NM_014444	exon7	c.T680C	p.I227T	TGGGCATTGGGGG	.	19.0	4.0	72.0	0.0	.	93
WISP2	8839	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	43344036	43344036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	WISP2	NM_003881	exon1	c.G5A	p.R2K	ACATGAGAGGCAC	.	12.0	5.0	47.0	0.0	.	130
WNT8A	7478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137426639	137426639	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	WNT8A	NM_058244	exon6	c.C933T	p.S311S	AAGCAGCTGTAAC	.	49.0	25.0	121.0	0.0	.	524
YME1L1	10730	hgsc.bcm.edu;bcgsc.ca	37	10	27436456	27436456	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	YME1L1	NM_139312	exon3	c.310delC	p.R104fs	CTGGACGGATGTG	.	92.0	43.0	284.0	0.0	.	91
ZNF185	7739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152106689	152106689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF185	NM_001178106	exon16	c.C1286T	p.A429V	AGGATGCAAAGGC	.	33.0	26.0	102.0	0.0	.	133
ZNF398	57541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	148863347	148863347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF398	NM_170686	exon3	c.A518G	p.K173R	TCATGAAGGGCAA	.	62.0	25.0	145.0	0.0	.	91
ZNF667	63934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56952618	56952618	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF667	NM_022103	exon5	c.C1746T	p.P582P	TTCATAGGGTTTC	.	29.0	11.0	95.0	0.0	.	91
ZNF70	7621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24086004	24086004	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF70	NM_021916	exon2	c.T1324A	p.S442T	CCCCAGAATGAAT	.	40.0	23.0	166.0	0.0	.	92
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	88964537	88964537	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	ZNF804B	NM_181646	exon4	c.C2241T	p.H747H	AGAACACCACTCA	.	58.0	6.0	131.0	0.0	.	101
MEIS3	56917	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47912456	47912457	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	TC	TC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	.	.	.	p.D341L	TCCTCATCTTCTC	.	19.0	4.0	93.0	0.0	.	.
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32724674	32724675	+	Silent	DNP	TC	TC	AT	novel		TCGA-EP-A2KC-01A-11D-A20W-10	TCGA-EP-A2KC-10A-01D-A20W-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0fa04a7-a506-4a22-b41f-ee8b13a9d83c	da91c6e7-c91e-4c80-bb15-8e0cd4881866	.	.	.	.	.	p.F2842F	ATTCACTCTGGAG	.	26.0	9.0	87.0	0.0	.	.