Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AASS	10157	hgsc.bcm.edu;bcgsc.ca	37	7	121721604	121721604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AASS	NM_005763	exon20	c.A2230G	p.N744D	CTCTGTTTATAAG	.	67.0	4.0	110.0	0.0	.	92
ABCA12	26154	hgsc.bcm.edu;bcgsc.ca	37	2	215807647	215807647	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABCA12	NM_015657	exon43	c.6482+2T>C	.	TTCTTCACCTGCT	.	86.0	4.0	114.0	0.0	.	99
ABCA6	23460	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	67111077	67111077	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABCA6	NM_080284	exon13	c.A1608G	p.G536G	AACTGATCCTAAG	.	46.0	5.0	52.0	0.0	.	159
ABHD12	26090	hgsc.bcm.edu;bcgsc.ca	37	20	25284191	25284191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABHD12	NM_001042472	exon11	c.A1024G	p.R342G	CCTTTCTGCCAAG	.	35.0	4.0	38.0	0.0	.	91
ABL1	25	hgsc.bcm.edu;bcgsc.ca	37	9	133761037	133761037	+	Silent	SNP	G	G	T	rs148391456	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABL1	NM_007313	exon11	c.G3417T	p.S1139S	CAGTTCGGTGAAG	.	76.0	4.0	121.0	0.0	G|1.000;A|0.000	3810
ACACA	31	hgsc.bcm.edu;bcgsc.ca	37	17	35598872	35598872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACACA	NM_198834	exon23	c.A3029G	p.Q1010R	TACCTCTGTACCA	.	121.0	5.0	224.0	0.0	.	154
ACAP1	9744	hgsc.bcm.edu;bcgsc.ca	37	17	7249578	7249578	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACAP1	NM_014716	exon11	c.T870C	p.I290I	CACCATTCAGAGC	.	109.0	5.0	189.0	0.0	.	153
ACN9	57001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	96810376	96810376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACN9	NM_020186	exon2	c.C227A	p.T76N	ATTCAACTGGAAA	.	385.0	131.0	649.0	0.0	.	90
ACPL2	92370	ucsc.edu;bcgsc.ca	37	3	141011192	141011192	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACPL2	NM_152282	exon8	c.T588C	p.S196S	TTGGTCTGCAGAC	.	47.0	4.0	64.0	0.0	.	91
ADCY7	113	hgsc.bcm.edu;bcgsc.ca	37	16	50346835	50346835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADCY7	NM_001114	exon21	c.T2639C	p.V880A	TCTGTGTCATGTT	.	51.0	4.0	83.0	0.0	.	91
AKAP13	11214	hgsc.bcm.edu;bcgsc.ca	37	15	86273745	86273745	+	Silent	SNP	A	A	G	rs116261620	byfrequency;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP13	NM_006738	exon30	c.A7101G	p.E2367E	TGCAGAACAACTT	.	56.0	4.0	60.0	0.0	A|0.998;C|0.002	258
AKAP8	10270	hgsc.bcm.edu;bcgsc.ca	37	19	15485443	15485443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP8	NM_005858	exon3	c.C62T	p.A21V	CCATATGCACCTT	.	94.0	5.0	177.0	0.0	.	290
ALG2	85365	hgsc.bcm.edu;bcgsc.ca	37	9	101980978	101980978	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ALG2	NM_033087	exon2	c.G489A	p.E163E	GTATTCCTCTATC	.	47.0	4.0	79.0	0.0	.	92
ALG8	79053	hgsc.bcm.edu;bcgsc.ca	37	11	77832116	77832116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ALG8	NM_024079	exon4	c.T473C	p.V158A	CGGTCCACAATTA	.	98.0	5.0	148.0	0.0	.	93
ANXA7	310	hgsc.bcm.edu;bcgsc.ca	37	10	75156931	75156931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANXA7	NM_004034	exon4	c.C361A	p.P121T	GTAGTGGAACCTG	.	56.0	4.0	61.0	0.0	.	516
APOD	347	hgsc.bcm.edu;bcgsc.ca	37	3	195306237	195306237	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	APOD	NM_001647	exon2	c.G96T	p.P32P	CTGCACCGGAGGA	.	45.0	4.0	89.0	0.0	.	516
ARHGAP18	93663	hgsc.bcm.edu;bcgsc.ca	37	6	129937450	129937450	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARHGAP18	NM_033515	exon8	c.953-2A>G	.	AGAATCTGCAAGA	.	86.0	4.0	167.0	0.0	.	230
ARHGEF26	26084	hgsc.bcm.edu;bcgsc.ca	37	3	153840493	153840493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARHGEF26	NM_001251962	exon2	c.A712G	p.N238D	AGTACAAACAGCC	.	56.0	4.0	63.0	0.0	.	47
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27094372	27094372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARID1A	NM_006015	exon11	c.A3080G	p.Y1027C	ACCGTTATCTGGC	.	223.0	62.0	348.0	0.0	.	584
ASTN2	23245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	119858432	119858432	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ASTN2	NM_014010	exon5	c.1016-2A>T	.	TCCTCCTGTGAGT	.	81.0	25.0	134.0	0.0	.	161
ATP7A	538	hgsc.bcm.edu;bcgsc.ca	37	X	77258577	77258577	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATP7A	NM_000052	exon6	c.T1551C	p.Y517Y	AATATATTCTATA	.	82.0	4.0	113.0	0.0	.	130
BAG4	9530	hgsc.bcm.edu;bcgsc.ca	37	8	38067825	38067825	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAG4	NM_004874	exon5	c.A1188G	p.E396E	ACAAGAAGTAGAA	.	93.0	4.0	235.0	0.0	.	228
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160242972	160242972	+	Silent	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAZ2B	NM_013450	exon22	c.T3363G	p.L1121L	CTCTTGAAGAACA	.	153.0	34.0	255.0	0.0	.	94
BET1L	51272	hgsc.bcm.edu;bcgsc.ca	37	11	206034	206034	+	Missense_Mutation	SNP	G	G	T	rs199668338	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BET1L	NM_016526	exon2	c.C29A	p.P10Q	GCGCCCGGGCTCT	.	70.0	4.0	119.0	0.0	.	514
BPTF	2186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65942113	65942113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BPTF	NM_182641	exon21	c.C7289T	p.P2430L	CACAGCCCCAAGT	.	149.0	31.0	198.0	0.0	.	94
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	41246557	41246557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BRCA1	NM_007300	exon10	c.A991G	p.R331G	TCCGCCTATCATT	.	116.0	5.0	154.0	0.0	.	3415
BTN3A1	11119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26413697	26413697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BTN3A1	NM_007048	exon10	c.A1319C	p.K440T	GGAATAAGTATCG	.	60.0	15.0	109.0	0.0	.	92
C16orf71	146562	hgsc.bcm.edu;bcgsc.ca	37	16	4793096	4793096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C16orf71	NM_139170	exon5	c.A836G	p.E279G	GACAAGAAGACAA	.	86.0	4.0	126.0	0.0	.	68
C16orf80	29105	hgsc.bcm.edu;bcgsc.ca	37	16	58148804	58148804	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C16orf80	NM_013242	exon5	c.C486A	p.I162I	CCGTCGGATGCGA	.	70.0	4.0	110.0	0.0	.	226
C19orf80	55908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11352157	11352157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_018687	exon3	c.C496T	p.L166F	TGGGCCCTCACAG	.	72.0	18.0	130.0	0.0	.	.
C1orf127	148345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11009710	11009710	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C1orf127	NM_001170754	exon11	c.C1261T	p.L421L	GGTGCAGGAGGTC	.	132.0	26.0	133.0	0.0	.	91
C2orf74	339804	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	61390252	61390252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001143959	exon3	c.G296A	p.S99N	GACAGAGTAAGGA	.	95.0	29.0	164.0	1.0	.	.
C6orf165	154313	hgsc.bcm.edu;bcgsc.ca	37	6	88123541	88123541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	C6orf165,brain,glioma,-1	C6orf165	NM_001031743	exon4	c.G206T	p.R69L	TGACTCGGCTATT	.	102.0	5.0	135.0	1.0	.	90
C6orf222	389384	broad.mit.edu;bcgsc.ca	37	6	36297976	36297976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C6orf222	NM_001010903	exon2	c.C492A	p.H164Q	GGCCGCGTGTTTC	.	308.0	30.0	450.0	2.0	.	93
CABIN1	23523	hgsc.bcm.edu;bcgsc.ca	37	22	24455827	24455827	+	Splice_Site	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CABIN1	NM_001201429	exon10	c.1249+1G>A	.	AATCTGGTAGGAA	.	72.0	4.0	132.0	0.0	.	94
CENPE	1062	hgsc.bcm.edu;bcgsc.ca	37	4	104116362	104116362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CENPE	NM_001813	exon5	c.T386C	p.V129A	TAAGATACACGTA	.	128.0	6.0	155.0	0.0	.	277
CEP170B	283638	hgsc.bcm.edu;bcgsc.ca	37	14	105349493	105349493	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001112726	exon8	c.C699T	p.T233T	GGAGACCCCGCAG	.	70.0	4.0	105.0	0.0	.	.
CFH	3075	broad.mit.edu;mdanderson.org	37	1	196715034	196715034	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CFH	NM_000186	exon21	c.C3398A	p.S1133X	CTTCATCAGTTGA	.	919.0	112.0	709.0	1.0	.	566
CIT	11113	hgsc.bcm.edu;bcgsc.ca	37	12	120214542	120214542	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CIT	NM_001206999	exon14	c.A1770G	p.R590R	AGACTCTCTCAGC	.	69.0	4.0	108.0	0.0	.	399
CLDN23	137075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8560187	8560187	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_194284	exon1	c.G279T	p.L93L	GGTCCTGGGGCTT	.	17.0	6.0	17.0	0.0	.	.
CLIP1	6249	ucsc.edu;bcgsc.ca	37	12	122773083	122773083	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CLIP1	NM_001247997	exon21	c.A3600G	p.E1200E	TTCTTCTTCCAGC	.	33.0	4.0	64.0	0.0	.	155
COL5A2	1290	hgsc.bcm.edu;bcgsc.ca	37	2	189950498	189950498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COL5A2	NM_000393	exon10	c.G691A	p.G231S	CACCACCCTACAG	.	55.0	4.0	56.0	0.0	.	92
COX5B	1329	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	98262581	98262581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COX5B	NM_001862	exon1	c.C32T	p.T11M	CTGGAACGCTGGC	.	44.0	4.0	51.0	0.0	.	226
CPT1B	1375	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	51011460	51011460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CPT1B	NM_001145135	exon11	c.T1196C	p.F399S	CTAAAGAAGGCCT	.	42.0	4.0	62.0	0.0	.	116
CRIM1	51232	hgsc.bcm.edu;bcgsc.ca	37	2	36771541	36771541	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CRIM1	NM_016441	exon15	c.C2646A	p.T882T	ACCAACCAATATA	.	90.0	5.0	119.0	0.0	.	118
CSRNP1	64651	hgsc.bcm.edu;bcgsc.ca	37	3	39184689	39184689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CSRNP1	NM_033027	exon5	c.T1627C	p.S543P	GTGGAGACAGGCC	.	77.0	4.0	130.0	0.0	.	230
CYLC2	1539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	105767561	105767561	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYLC2	NM_001340	exon5	c.T648C	p.D216D	GAAAGATAGCAAA	.	724.0	183.0	1067.0	0.0	.	91
CYP27A1	1593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219674345	219674345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYP27A1	NM_000784	exon2	c.G301A	p.G101R	TACTTAGGGCCTC	.	75.0	20.0	70.0	0.0	.	91
CYTH1	9267	hgsc.bcm.edu;bcgsc.ca	37	17	76695035	76695035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYTH1	NM_017456	exon8	c.T566C	p.L189P	AAGGAGAGGACGT	.	157.0	7.0	220.0	0.0	.	228
DAO	1610	hgsc.bcm.edu;bcgsc.ca	37	12	109294259	109294259	+	Missense_Mutation	SNP	G	G	A	rs4262766	byfrequency	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DAO	NM_001917	exon11	c.G992A	p.G331E	TCTTTGGGAGAAT	.	70.0	4.0	81.0	0.0	G|1.000;A|0.000	92
DCHS2	54798	hgsc.bcm.edu;bcgsc.ca	37	4	155180908	155180908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DCHS2	NM_017639	exon20	c.G5213A	p.G1738E	AGTTGTCCTATTT	.	61.0	4.0	98.0	0.0	.	94
DDX6	1656	hgsc.bcm.edu;bcgsc.ca	37	11	118626140	118626140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DDX6	NM_004397	exon12	c.A1247G	p.E416G	TAGGTCTCTGCCA	.	86.0	5.0	142.0	0.0	.	659
DGKG	1608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185970912	185970912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DGKG	NM_001346	exon18	c.G1570A	p.D524N	CAAGGTCATTTCC	.	69.0	7.0	111.0	0.0	.	714
DHTKD1	55526	hgsc.bcm.edu;bcgsc.ca	37	10	12160885	12160885	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DHTKD1	NM_018706	exon15	c.A2540G	p.Q847R	CTTTACAGCAAGA	.	74.0	4.0	106.0	0.0	.	515
DHX57	90957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39042772	39042772	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DHX57	NM_198963	exon20	c.T3497A	p.F1166Y	TCCGTGAATTGTC	.	95.0	13.0	159.0	0.0	.	228
DKK1	22943	hgsc.bcm.edu;bcgsc.ca	37	10	54074421	54074421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DKK1	NM_012242	exon1	c.C227A	p.T76N	ACCAGACCATTGA	.	52.0	4.0	117.0	0.0	.	1083
DLK2	65989	hgsc.bcm.edu;bcgsc.ca	37	6	43419708	43419708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DLK2	NM_023932	exon5	c.A386G	p.E129G	TTGCGCTCGCAGT	.	49.0	4.0	83.0	0.0	.	68
DNAH3	55567	hgsc.bcm.edu;bcgsc.ca	37	16	20974803	20974803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DNAH3	NM_017539	exon53	c.A10403G	p.Q3468R	AATCCTTGAGAGA	.	78.0	4.0	99.0	0.0	.	167
DNTTIP2	30836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94342288	94342288	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_014597	exon2	c.A1203G	p.E401E	GGACTCTTCTTCA	.	547.0	135.0	850.0	0.0	.	.
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169508908	169508908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DOCK2	NM_004946	exon51	c.A5350G	p.S1784G	CGCCTCAGCCAGA	.	95.0	30.0	126.0	0.0	.	97
DUSP2	1844	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96809608	96809608	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DUSP2	NM_004418	exon4	c.T899G	p.F300C	CCCATGAAACTGA	.	179.0	45.0	243.0	1.0	.	658
DZANK1	55184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	18407716	18407716	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001099407	exon10	c.C949T	p.Q317X	CCTCTTGTGATGA	.	75.0	18.0	98.0	0.0	.	.
EFCAB13	124989	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45451924	45451924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_152347	exon12	c.A964C	p.K322Q	AAGAAGAAAAATA	.	167.0	45.0	336.0	1.0	.	.
EFCAB13	124989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45451912	45451912	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_152347	exon12	c.A952C	p.K318Q	TATCTAAAATATA	.	160.0	45.0	304.0	0.0	.	.
EHBP1L1	254102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65349836	65349836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EHBP1L1	NM_001099409	exon9	c.G1693A	p.G565R	GAAGCTGGGGGTT	.	39.0	9.0	50.0	0.0	.	69
EIF4ENIF1	56478	hgsc.bcm.edu;bcgsc.ca	37	22	31851919	31851919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EIF4ENIF1	NM_019843	exon8	c.T1018C	p.W340R	AGAACCACCTACT	.	104.0	5.0	129.0	0.0	.	91
EML3	256364	hgsc.bcm.edu;bcgsc.ca	37	11	62375693	62375693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EML3	NM_153265	exon10	c.A1186G	p.M396V	GCTTCATTCCCCG	.	59.0	4.0	104.0	0.0	.	91
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43528527	43528527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EPG5	NM_020964	exon6	c.A1513G	p.N505D	ATGGGTTATGCAA	.	46.0	10.0	75.0	0.0	.	580
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74014678	74014678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EVPL	NM_001988	exon12	c.C1288A	p.Q430K	GCAGCTGCACCTG	.	140.0	41.0	199.0	0.0	.	93
EVX2	344191	hgsc.bcm.edu;bcgsc.ca	37	2	176948503	176948503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EVX2	NM_001080458	exon1	c.T2C	p.M1T	TCCATCATCTCAG	.	83.0	4.0	179.0	0.0	.	70
EXOC4	60412	hgsc.bcm.edu;bcgsc.ca	37	7	133692446	133692446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EXOC4	NM_021807	exon17	c.T2545C	p.S849P	CTGATCTCCTGCA	.	81.0	4.0	129.0	0.0	.	159
FAM108B1	51104	hgsc.bcm.edu;bcgsc.ca	37	9	74485072	74485072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM108B1	NM_016014	exon3	c.T574C	p.S192P	GAGGAGAATGAAG	.	94.0	4.0	184.0	0.0	.	90
FAM120B	84498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170657249	170657249	+	Silent	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM120B	NM_032448	exon5	c.T2028A	p.P676P	AACGCCTAGTTTG	.	46.0	16.0	62.0	0.0	.	91
FAM179B	23116	hgsc.bcm.edu;bcgsc.ca	37	14	45535808	45535808	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM179B	NM_015091	exon16	c.C4428T	p.T1476T	AGTCACCAGAAAA	.	81.0	4.0	167.0	0.0	.	93
FAM211B	388886	hgsc.bcm.edu;bcgsc.ca	37	22	24981864	24981864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_207644	exon4	c.G938T	p.C313F	CTGGCACAGCAGG	.	64.0	4.0	59.0	0.0	.	.
FAM76B	143684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	95516268	95516268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM76B	NM_144664	exon5	c.A524G	p.H175R	TGATGATGGTGGT	.	315.0	80.0	443.0	1.0	.	90
FAN1	22909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31221547	31221547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAN1	NM_014967	exon12	c.A2734G	p.R912G	GAAGGCAGAGTGG	.	100.0	26.0	133.0	0.0	.	90
FASN	2194	hgsc.bcm.edu;bcgsc.ca	37	17	80041462	80041462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FASN	NM_004104	exon31	c.A5272G	p.R1758G	AGCACCTCACGCT	.	64.0	5.0	83.0	0.0	.	90
FAT1	2195	hgsc.bcm.edu;bcgsc.ca	37	4	187584675	187584675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAT1	NM_005245	exon3	c.T3358C	p.S1120P	ACGATGAAAGAGG	.	89.0	5.0	144.0	0.0	.	34
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150946265	150946265	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAT2	NM_001447	exon1	c.A2228T	p.D743V	CCAGCATCAGGGT	.	65.0	6.0	121.0	0.0	.	96
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157497528	157497528	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FCRL5	NM_031281	exon9	c.C1839T	p.P613P	TCCAGAGGGGGCT	.	218.0	140.0	222.0	0.0	.	156
FOXJ3	22887	hgsc.bcm.edu;bcgsc.ca	37	1	42730811	42730811	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FOXJ3	NM_001198851	exon6	c.C419G	p.P140R	GATCGAGGCACTT	.	80.0	4.0	85.0	0.0	.	228
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	161292754	161292754	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GABRA1	NM_001127643	exon5	c.T215A	p.I72N	CTGATATCTTCGT	.	207.0	12.0	225.0	0.0	.	93
GAS1	2619	hgsc.bcm.edu;bcgsc.ca	37	9	89561085	89561085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GAS1	NM_002048	exon1	c.C610T	p.R204C	CGGTGCGGCATTC	.	39.0	4.0	63.0	0.0	.	226
GBF1	8729	hgsc.bcm.edu;bcgsc.ca	37	10	104119157	104119157	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GBF1	NM_001199378	exon11	c.G1145C	p.R382P	ATCCCCGGGGCGT	.	76.0	4.0	114.0	0.0	.	91
GCN1L1	10985	hgsc.bcm.edu;bcgsc.ca	37	12	120582132	120582132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GCN1L1	NM_006836	exon42	c.T5473C	p.F1825L	CATCAAAGAGGCC	.	115.0	6.0	190.0	0.0	.	94
GCN1L1	10985	hgsc.bcm.edu;bcgsc.ca	37	12	120591048	120591048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GCN1L1	NM_006836	exon33	c.T4031C	p.L1344P	GCGATGAGCTTGG	.	110.0	5.0	188.0	0.0	.	94
GJB6	10804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20797362	20797362	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GJB6	NM_001110220	exon4	c.C258A	p.T86T	CGCTGGGGTGGAG	.	49.0	9.0	91.0	0.0	.	91
GNA13	10672	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	63014414	63014414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GNA13	NM_006572	exon3	c.C518A	p.S173Y	TTTACAGATTCAC	.	277.0	20.0	378.0	1.0	.	227
GPR126	57211	hgsc.bcm.edu;bcgsc.ca	37	6	142764487	142764487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR126	NM_020455	exon26	c.G3634A	p.G1212R	TTCCATGGACAAG	.	82.0	4.0	105.0	0.0	.	91
GPR148	344561	hgsc.bcm.edu;bcgsc.ca	37	2	131487678	131487678	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR148	NM_207364	exon1	c.C954T	p.Y318Y	CACATACCTGTAC	.	81.0	5.0	91.0	0.0	.	91
GPR84	53831	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	54757018	54757018	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR84	NM_020370	exon2	c.A618G	p.K206K	TGCTCGTTTGACC	.	51.0	5.0	76.0	0.0	.	523
GRB7	2886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37902437	37902437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GRB7	NM_001242442	exon14	c.G1503T	p.K501N	AGTGAAGCATTAT	.	102.0	27.0	172.0	1.0	.	848
GREB1	9687	hgsc.bcm.edu;bcgsc.ca	37	2	11770126	11770126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GREB1	NM_014668	exon26	c.A4502G	p.E1501G	TAGGAGAGGAGAT	.	116.0	7.0	206.0	0.0	.	91
GRM4	2914	ucsc.edu;bcgsc.ca	37	6	34004201	34004201	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GRM4	NM_000841	exon9	c.T1686C	p.Y562Y	CATGTCATAGGGA	.	43.0	4.0	49.0	0.0	.	525
GTSE1	51512	hgsc.bcm.edu;bcgsc.ca	37	22	46704325	46704325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GTSE1	NM_016426	exon4	c.A247G	p.T83A	TTGCCCACATCTG	.	80.0	4.0	128.0	0.0	.	187
GUCY1A3	2982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156631936	156631936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GUCY1A3	NM_001130687	exon6	c.C619T	p.P207S	TTCTTCCCTAAGA	.	96.0	27.0	138.0	0.0	.	93
HAP1	9001	hgsc.bcm.edu;bcgsc.ca	37	17	39889015	39889015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HAP1	NM_177977	exon2	c.A505G	p.I169V	GGGTGATCTTTTT	.	130.0	6.0	250.0	0.0	.	92
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18687567	18687567	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HDAC9	NM_178425	exon9	c.C1195T	p.L399L	GCTCTCCTGCAGC	.	57.0	18.0	83.0	0.0	.	227
HEATR5B	54497	hgsc.bcm.edu;bcgsc.ca	37	2	37227915	37227915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEATR5B	NM_019024	exon33	c.A5359G	p.R1787G	ATATTCTTGCAAT	.	100.0	4.0	174.0	0.0	.	142
HEPACAM2	253012	hgsc.bcm.edu;bcgsc.ca	37	7	92825166	92825166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEPACAM2	NM_001039372	exon8	c.T1250C	p.F417S	TCTGGAAAAGCAA	.	89.0	5.0	113.0	0.0	.	157
HGF	3082	hgsc.bcm.edu;bcgsc.ca	37	7	81335733	81335733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HGF	NM_000601	exon15	c.G1627A	p.D543N	CATAATCTTTCAA	.	80.0	4.0	122.0	0.0	.	516
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	143094773	143094773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HIVEP2	NM_006734	exon5	c.A1103G	p.K368R	GCAAGTTTCTGTT	.	115.0	6.0	201.0	0.0	.	95
HIVEP3	59269	hgsc.bcm.edu;bcgsc.ca	37	1	42046720	42046720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HIVEP3	NM_024503	exon4	c.T3749C	p.L1250P	CCAGGGAGCTGAA	.	70.0	4.0	102.0	0.0	.	157
HORMAD2	150280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30517682	30517682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_152510	exon9	c.G472T	p.V158F	GCCAGTGTTCTAC	.	226.0	60.0	301.0	0.0	.	.
HR	55806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21986470	21986470	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HR	NM_018411	exon2	c.A214C	p.M72L	GGAGCATGTCCTT	.	60.0	20.0	83.0	0.0	.	154
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152192435	152192435	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HRNR	NM_001009931	exon3	c.G1670C	p.S557T	CCATAGCTGGAAG	.	291.0	27.0	255.0	0.0	.	93
HSPA4L	22824	hgsc.bcm.edu;bcgsc.ca	37	4	128716923	128716923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HSPA4L	NM_014278	exon3	c.A166G	p.I56V	CAACAGATAGTCA	.	117.0	5.0	198.0	0.0	.	228
IARS	3376	hgsc.bcm.edu;bcgsc.ca	37	9	95012165	95012165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IARS	NM_013417	exon25	c.A2591G	p.K864R	AAAGACTTGATAT	.	78.0	4.0	144.0	0.0	.	92
IFIT1	3434	hgsc.bcm.edu;bcgsc.ca	37	10	91163429	91163429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IFIT1	NM_001548	exon2	c.T1397C	p.L466P	TGAGACTGGCTGC	.	99.0	5.0	118.0	0.0	.	90
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	130408626	130408626	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IGSF1	NM_001170961	exon18	c.A3713T	p.Y1238F	TCAGGGTAGGCCT	.	140.0	11.0	187.0	0.0	.	133
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	117156433	117156433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IGSF3	NM_001542	exon4	c.G786T	p.M262I	TCGGGTCATAGCA	.	135.0	32.0	180.0	0.0	.	92
IKBKG	8517	hgsc.bcm.edu;bcgsc.ca	37	X	153770550	153770550	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IKBKG	NM_001099856	exon1	c.T72C	p.S24S	TCCCAGTCTCTTC	.	79.0	5.0	112.0	0.0	.	636
IL11RA	3590	hgsc.bcm.edu;bcgsc.ca	37	9	34659894	34659894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IL11RA	NM_001142784	exon9	c.A949G	p.T317A	CCGAGCACTGGTG	.	51.0	4.0	94.0	0.0	.	227
IL1R1	3554	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102791973	102791973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IL1R1	NM_000877	exon10	c.T1171C	p.Y391H	ATACTGTATCCAA	.	692.0	211.0	972.0	2.0	.	523
INO80D	54891	hgsc.bcm.edu;bcgsc.ca	37	2	206893049	206893049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	INO80D	NM_017759	exon6	c.G1084A	p.D362N	CATCATCATCATC	.	59.0	4.0	61.0	0.0	.	91
IRGC	56269	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44222899	44222899	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IRGC	NM_019612	exon2	c.G189A	p.S63S	CGAGTCGGGCGCG	.	47.0	16.0	67.0	1.0	.	70
KANSL3	55683	hgsc.bcm.edu;bcgsc.ca	37	2	97276523	97276523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001115016	exon11	c.G1259T	p.R420L	TTCTCCCGGAAGT	.	69.0	4.0	93.0	0.0	.	.
KAT2A	2648	hgsc.bcm.edu;bcgsc.ca	37	17	40266531	40266531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KAT2A	NM_021078	exon14	c.C2111A	p.P704H	TCCACAGGGATCT	.	68.0	4.0	104.0	0.0	.	523
KIAA1324L	222223	hgsc.bcm.edu;bcgsc.ca	37	7	86574222	86574222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1324L	NM_001142749	exon4	c.A647G	p.E216G	AAGAACTCAAAGA	.	134.0	6.0	245.0	0.0	.	97
KIAA1958	158405	hgsc.bcm.edu;bcgsc.ca	37	9	115421704	115421704	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1958	NM_133465	exon4	c.C1506A	p.T502T	CAGCACCTTCAGC	.	73.0	4.0	82.0	0.0	.	91
KLB	152831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39435941	39435941	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLB	NM_175737	exon2	c.A937T	p.T313S	GAAAACACGATGG	.	197.0	55.0	317.0	0.0	.	69
KLHDC10	23008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	129761948	129761948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHDC10	NM_014997	exon5	c.A685G	p.I229V	GGCTATATTTACA	.	184.0	67.0	232.0	0.0	.	90
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	117053530	117053536	+	Frame_Shift_Del	DEL	TGTAGGA	TGTAGGA	-	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	TGTAGGA	TGTAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHL13	NM_001168299	exon5	c.527_533del	p.176_178del	AGAATCTGTAGGA	.	184.0	0.0	343.0	0.0	.	556
KRTAP4-11	653240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39274140	39274140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_033059	exon1	c.G428T	p.S143I	CAGCAGCTGGAGA	.	97.0	18.0	148.0	0.0	.	.
LHX8	431707	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	75602350	75602350	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LHX8	NM_001001933	exon3	c.C81T	p.R27R	GACTCGCAAAGGC	.	93.0	20.0	163.0	0.0	.	93
LONRF1	91694	hgsc.bcm.edu;bcgsc.ca	37	8	12586494	12586494	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LONRF1	NM_152271	exon10	c.T1926C	p.V642V	TCCTCCAACTGTA	.	122.0	6.0	311.0	0.0	.	91
LOXL3	84695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74761507	74761507	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LOXL3	NM_032603	exon11	c.T1875C	p.N625N	GGTGCCATTTGGG	.	287.0	64.0	435.0	0.0	.	226
LRIT3	345193	hgsc.bcm.edu;bcgsc.ca	37	4	110791336	110791336	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRIT3	NM_198506	exon4	c.A1431G	p.Q477Q	GGATCAAACAATG	.	124.0	5.0	214.0	0.0	.	90
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170136002	170136002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRP2	NM_004525	exon12	c.A1445G	p.Y482C	ACTAGATAGATTT	.	144.0	45.0	201.0	0.0	.	175
LRRC7	57554	hgsc.bcm.edu;bcgsc.ca	37	1	70460299	70460299	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRC7	NM_020794	exon9	c.A873G	p.L291L	AATGCTACCCAAT	.	70.0	4.0	109.0	0.0	.	163
LRRN3	54674	hgsc.bcm.edu;bcgsc.ca	37	7	110764148	110764148	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRN3	NM_018334	exon2	c.T1320C	p.V440V	CTATGTTTCCTTT	.	50.0	4.0	82.0	0.0	.	154
LSR	51599	hgsc.bcm.edu;bcgsc.ca	37	19	35758316	35758316	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LSR	NM_205834	exon9	c.G1593A	p.R531R	CAGCCGGGACGAC	.	44.0	4.0	55.0	0.0	.	90
MACF1	23499	hgsc.bcm.edu;bcgsc.ca	37	1	39818713	39818713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MACF1	NM_012090	exon40	c.A5048G	p.K1683R	ACAAGAAGAAGAT	.	80.0	4.0	128.0	0.0	.	165
MAPK14	1432	hgsc.bcm.edu;bcgsc.ca	37	6	36027094	36027094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAPK14	NM_139012	exon3	c.C275T	p.P92L	TTACACCTGCAAG	.	86.0	4.0	162.0	0.0	.	1444
MAPKBP1	23005	hgsc.bcm.edu;bcgsc.ca	37	15	42104835	42104835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAPKBP1	NM_001128608	exon7	c.A620G	p.D207G	TCGATGACAGCAA	.	61.0	4.0	110.0	0.0	.	589
MAPT	4137	hgsc.bcm.edu;bcgsc.ca	37	17	44049223	44049223	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAPT	NM_001123066	exon3	c.134-2A>G	.	TGTTCCAGAATCT	.	57.0	4.0	85.0	0.0	.	91
MCM9	254394	hgsc.bcm.edu;bcgsc.ca	37	6	119147383	119147383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MCM9	NM_017696	exon11	c.A1888G	p.R630G	ACTGTCTCTGGTA	.	105.0	5.0	150.0	0.0	.	515
MCOLN2	255231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85431253	85431253	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MCOLN2	NM_153259	exon2	c.G216C	p.K72N	GACTATCTTCAAA	.	127.0	23.0	186.0	0.0	.	94
MDN1	23195	hgsc.bcm.edu;bcgsc.ca	37	6	90438701	90438701	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MDN1	NM_014611	exon36	c.A5298G	p.L1766L	CTTTGCTAATGCT	.	99.0	4.0	170.0	0.0	.	100
MED16	10025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	890977	890977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MED16	NM_005481	exon2	c.G155A	p.R52H	TCGCTGCGCAGGT	.	52.0	12.0	82.0	0.0	.	186
MGAT5B	146664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74898718	74898718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MGAT5B	NM_198955	exon3	c.G444T	p.Q148H	GGACCAGATCCTG	.	117.0	23.0	207.0	0.0	.	93
MLL4	8085	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	36222960	36222960	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MLL4	NM_014727	exon27	c.T5589C	p.A1863A	GGGGGCTCGAATC	.	45.0	4.0	59.0	0.0	.	697
MLLT4	4301	hgsc.bcm.edu;bcgsc.ca	37	6	168307929	168307929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MLLT4	NM_001040000	exon13	c.A1729G	p.R577G	ATGATCAGAGTAG	.	140.0	6.0	209.0	0.0	.	685
MOBP	4336	hgsc.bcm.edu;bcgsc.ca	37	3	39554906	39554906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MOBP	NM_182935	exon4	c.A239G	p.K80R	CAAAGAAGAAGTG	.	69.0	4.0	134.0	0.0	.	515
MORN1	79906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2288951	2288951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MORN1	NM_024848	exon10	c.A956G	p.D319G	GGCACGTCGGCTT	.	174.0	38.0	253.0	0.0	.	92
MROH6	642475	hgsc.bcm.edu;bcgsc.ca	37	8	144652226	144652226	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001100878	exon7	c.G1053T	p.V351V	ATGTGCCACCATA	.	82.0	5.0	79.0	0.0	.	.
MTHFR	4524	hgsc.bcm.edu;bcgsc.ca	37	1	11854524	11854524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTHFR	NM_005957	exon8	c.C1238T	p.P413L	TCCTTGGGGGACT	.	125.0	5.0	159.0	0.0	.	90
MTSS1	9788	hgsc.bcm.edu;bcgsc.ca	37	8	125580779	125580779	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTSS1	NM_014751	exon8	c.461-2A>G	.	TCTCCCTGCAAAA	.	94.0	6.0	89.0	0.0	.	91
MTUS1	57509	hgsc.bcm.edu;bcgsc.ca	37	8	17541870	17541870	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTUS1	NM_001001924	exon7	c.A2805G	p.A935A	TGTCAATGCCTCA	.	79.0	4.0	169.0	0.0	.	92
MUTYH	4595	hgsc.bcm.edu;bcgsc.ca	37	1	45800076	45800076	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MUTYH	NM_012222	exon2	c.T144C	p.P48P	GGCAGAAGGCTTG	.	80.0	4.0	109.0	0.0	.	1083
MVD	4597	hgsc.bcm.edu;bcgsc.ca	37	16	88724396	88724396	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MVD	NM_002461	exon3	c.C183A	p.T61T	GTCCTCGGTGAAG	.	115.0	5.0	169.0	0.0	.	90
MYOM2	9172	hgsc.bcm.edu;bcgsc.ca	37	8	2071186	2071186	+	Missense_Mutation	SNP	C	C	T	rs139807442	byfrequency	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYOM2	NM_003970	exon29	c.C3515T	p.T1172M	ATGAAACGGAGAC	.	80.0	4.0	157.0	0.0	A|0.000;C|1.000;T|0.000	95
NACC2	138151	hgsc.bcm.edu;bcgsc.ca	37	9	138905769	138905769	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NACC2	NM_144653	exon4	c.G1098A	p.L366L	TGCACACAGGTGG	.	72.0	4.0	93.0	0.0	.	90
NAV3	89795	hgsc.bcm.edu;bcgsc.ca	37	12	78598913	78598913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NAV3	NM_014903	exon38	c.C6967A	p.P2323T	GGAGATCCCCTGG	.	58.0	4.0	69.0	0.0	.	279
NBAS	51594	hgsc.bcm.edu;bcgsc.ca	37	2	15613387	15613387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NBAS	NM_015909	exon16	c.A1684G	p.R562G	ACTTCCTCCACTG	.	90.0	5.0	145.0	0.0	.	94
NCBP1	4686	hgsc.bcm.edu;bcgsc.ca	37	9	100410502	100410502	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NCBP1	NM_002486	exon8	c.C894A	p.P298P	TGATCCCGAGGTA	.	54.0	4.0	104.0	0.0	.	90
NCOA2	10499	hgsc.bcm.edu;bcgsc.ca	37	8	71074948	71074948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NCOA2	NM_006540	exon9	c.A974G	p.E325G	TTACCTTCATGAT	.	88.0	4.0	94.0	0.0	.	639
NEK11	79858	hgsc.bcm.edu;bcgsc.ca	37	3	130881262	130881262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NEK11	NM_024800	exon11	c.A973G	p.I325V	AAAAGGATCCACC	.	146.0	6.0	194.0	0.0	.	848
NEK4	6787	hgsc.bcm.edu;bcgsc.ca	37	3	52800369	52800369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NEK4	NM_003157	exon3	c.T383C	p.L128P	CGATGAAGGATGT	.	97.0	4.0	117.0	0.0	.	358
NLRP1	22861	hgsc.bcm.edu;bcgsc.ca	37	17	5425083	5425083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NLRP1	NM_001033053	exon13	c.T3556C	p.F1186L	TTTGGAACAGGGA	.	51.0	4.0	61.0	0.0	.	274
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56565058	56565058	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NLRP5	NM_153447	exon13	c.C3183A	p.I1061I	TGTGATCTCGAGG	.	89.0	20.0	148.0	0.0	.	162
NOL4	8715	hgsc.bcm.edu;bcgsc.ca	37	18	31673528	31673528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NOL4	NM_003787	exon5	c.A673G	p.M225V	CACTCATGTCAAA	.	72.0	4.0	103.0	0.0	.	93
NOP2	4839	hgsc.bcm.edu;bcgsc.ca	37	12	6669315	6669315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NOP2	NM_001258309	exon16	c.T1837C	p.F613L	CAATGAAGAACCC	.	67.0	4.0	128.0	0.0	.	92
NPHP1	4867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110926056	110926056	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NPHP1	NM_207181	exon6	c.A597G	p.E199E	AAGACCTTCATTT	.	68.0	20.0	119.0	0.0	.	92
ODF3	113746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	197590	197590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ODF3	NM_053280	exon3	c.C139A	p.R47S	AAGCTGCGTGCAC	.	71.0	10.0	85.0	0.0	.	493
OR10G2	26534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	22102803	22102803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR10G2	NM_001005466	exon1	c.A196G	p.I66V	GAAGAATGTACAT	.	290.0	71.0	447.0	0.0	.	69
OR4S1	256148	hgsc.bcm.edu;bcgsc.ca	37	11	48328087	48328087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR4S1	NM_001004725	exon1	c.T313C	p.F105L	CACTTCTTTGGTG	.	81.0	4.0	135.0	0.0	.	69
OSBPL7	114881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45894019	45894019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OSBPL7	NM_145798	exon10	c.C838A	p.L280M	ACTCCAGGTAGCG	.	63.0	14.0	94.0	0.0	.	68
OSGIN2	734	hgsc.bcm.edu;bcgsc.ca	37	8	90921887	90921887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OSGIN2	NM_001126111	exon2	c.C137T	p.P46L	CGATGCCATTAGT	.	121.0	6.0	141.0	0.0	.	68
OTUD3	23252	hgsc.bcm.edu;bcgsc.ca	37	1	20224100	20224100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_015207	exon4	c.A551G	p.D184G	ACTACGACAGTGT	.	75.0	4.0	89.0	0.0	.	.
PABPC1L	80336	hgsc.bcm.edu;bcgsc.ca	37	20	43552887	43552887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PABPC1L	NM_001124756	exon7	c.C962T	p.T321I	TAATTACCAGTGC	.	44.0	4.0	63.0	0.0	.	47
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30725244	30725244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCDH7	NM_032457	exon1	c.G2200T	p.D734Y	GTGATGGATGAAA	.	141.0	35.0	238.0	0.0	.	229
PDXDC1	23042	hgsc.bcm.edu;bcgsc.ca	37	16	15128199	15128199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PDXDC1	NM_015027	exon20	c.G1869T	p.E623D	AGTGGAGCTGCAG	.	73.0	4.0	97.0	0.0	.	91
PHF12	57649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	27251158	27251158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PHF12	NM_020889	exon4	c.A484G	p.S162G	GCCTGCTGGCTCT	.	186.0	8.0	275.0	0.0	.	91
PIGS	94005	hgsc.bcm.edu;bcgsc.ca	37	17	26888474	26888474	+	Missense_Mutation	SNP	G	G	T	rs116094938	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIGS	NM_033198	exon6	c.C642A	p.S214R	CTCAGCGCTCCAC	.	82.0	5.0	141.0	0.0	G|1.000;A|0.000	289
PIP4K2B	8396	hgsc.bcm.edu;bcgsc.ca	37	17	36934625	36934625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIP4K2B	NM_003559	exon6	c.G655A	p.G219S	TAGAACCCTGAAA	.	55.0	4.0	71.0	0.0	.	266
PIP4K2C	79837	hgsc.bcm.edu;bcgsc.ca	37	12	57989718	57989718	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIP4K2C	NM_001146258	exon4	c.T417C	p.G139G	TGATGGTCGCTTC	.	87.0	4.0	146.0	0.0	.	689
PKDREJ	10343	hgsc.bcm.edu;bcgsc.ca	37	22	46656423	46656423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PKDREJ	NM_006071	exon1	c.A2797G	p.M933V	CTGTCATTCTGAA	.	84.0	6.0	114.0	0.0	.	156
PLAC1	10761	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	133700150	133700150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLAC1	NM_021796	exon3	c.C563T	p.P188L	TGCAGAGGTTGAG	.	127.0	86.0	96.0	1.0	.	131
PLEC	5339	hgsc.bcm.edu;bcgsc.ca	37	8	144991777	144991777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLEC	NM_201380	exon32	c.T12623C	p.L4208P	TCGAAGAGGCCGC	.	144.0	6.0	127.0	0.0	.	141
PMEL	6490	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	56351868	56351868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PMEL	NM_001200054	exon5	c.G470A	p.G157D	TATTGGCCTGAAG	.	34.0	4.0	62.0	0.0	.	92
POLD1	5424	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50921165	50921165	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POLD1	NM_002691	exon27	c.C3285T	p.L1095L	GCAGCTCCTGCGG	.	174.0	52.0	255.0	0.0	.	840
POLE3	54107	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	116172342	116172342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POLE3	NM_017443	exon3	c.A145G	p.T49A	AGGATGTGGCGTA	.	43.0	4.0	67.0	0.0	.	227
POP1	10940	ucsc.edu;bcgsc.ca	37	8	99170220	99170220	+	Silent	SNP	G	G	T	rs200939314	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POP1	NM_001145860	exon16	c.G2796T	p.A932A	CCCGGCGGGGGAA	.	32.0	4.0	29.0	0.0	G|0.999;A|0.000	154
POU6F2	11281	hgsc.bcm.edu;bcgsc.ca	37	7	39500146	39500146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POU6F2	NM_007252	exon10	c.A1403G	p.N468S	CCACAGATCCTCA	.	161.0	8.0	234.0	0.0	.	90
PPP4R4	57718	hgsc.bcm.edu;bcgsc.ca	37	14	94716580	94716580	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PPP4R4	NM_058237	exon15	c.A1683G	p.E561E	ACAAGAACAGAGA	.	66.0	4.0	118.0	0.0	.	94
PRSS8	5652	hgsc.bcm.edu;bcgsc.ca	37	16	31143805	31143805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_002773	exon5	c.T650C	p.V217A	TCTTGGACAAAGT	.	92.0	7.0	121.0	0.0	.	.
PSME4	23198	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54101524	54101524	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PSME4	NM_014614	exon43	c.A5052G	p.K1684K	GATATCTTTAACT	.	180.0	46.0	251.0	1.0	.	275
PTPN13	5783	hgsc.bcm.edu;bcgsc.ca	37	4	87687669	87687669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PTPN13	NM_080685	exon27	c.A4343G	p.Q1448R	CAGGACAGGTAAC	.	79.0	4.0	119.0	0.0	.	230
PTPRH	5794	hgsc.bcm.edu;bcgsc.ca	37	19	55708079	55708079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PTPRH	NM_002842	exon10	c.C2068A	p.Q690K	CTCCCTGGGGGCA	.	75.0	4.0	110.0	0.0	.	138
QSER1	79832	hgsc.bcm.edu;bcgsc.ca	37	11	32956867	32956867	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	QSER1	NM_001076786	exon4	c.T3676C	p.L1226L	GAACATTTATCTT	.	54.0	4.0	52.0	0.0	.	95
RAP1GDS1	5910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	99300176	99300176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RAP1GDS1	NM_001100426	exon5	c.A373G	p.R125G	GAGGGCAGAAGTG	.	65.0	15.0	129.0	0.0	.	660
RBMS1	5937	hgsc.bcm.edu;bcgsc.ca	37	2	161133886	161133886	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RBMS1	NM_016836	exon12	c.T1071C	p.P357P	CGTTGCAGGCATG	.	95.0	6.0	146.0	0.0	.	90
RELN	5649	hgsc.bcm.edu;bcgsc.ca	37	7	103180823	103180823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RELN	NM_173054	exon44	c.T6751C	p.S2251P	TGAGAGAATACTG	.	47.0	4.0	83.0	0.0	.	574
RIMS1	22999	hgsc.bcm.edu;bcgsc.ca	37	6	72968750	72968750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RIMS1	NM_014989	exon18	c.T2989C	p.S997P	GATGCCTCCCGAA	.	80.0	4.0	138.0	0.0	.	144
RNF146	81847	hgsc.bcm.edu;bcgsc.ca	37	6	127608496	127608496	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNF146	NM_001242850	exon3	c.T738C	p.S246S	AGACTCTTTTGCT	.	91.0	4.0	142.0	0.0	.	226
RNF31	55072	ucsc.edu;bcgsc.ca	37	14	24620086	24620086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNF31	NM_017999	exon8	c.A1477G	p.S493G	CTAGTGAGCATGA	.	28.0	4.0	40.0	0.0	.	90
ROBO2	6092	hgsc.bcm.edu;bcgsc.ca	37	3	77612404	77612404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ROBO2	NM_002942	exon11	c.A1606G	p.N536D	ACTAAGAACAGTG	.	117.0	6.0	179.0	0.0	.	328
RRP12	23223	hgsc.bcm.edu;bcgsc.ca	37	10	99148093	99148093	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RRP12	NM_015179	exon8	c.G933T	p.L311L	GTCCTTCAGCAGC	.	71.0	4.0	93.0	0.0	.	92
RXRB	6257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33162736	33162736	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RXRB	NM_001270401	exon9	c.T1452C	p.P484P	CTGCTCAGGGTAC	.	171.0	8.0	294.0	0.0	.	189
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237666628	237666628	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RYR2	NM_001035	exon22	c.A2436T	p.K812N	ATTCAAATTTCTT	.	204.0	31.0	175.0	0.0	.	158
SARS	6301	ucsc.edu;bcgsc.ca	37	1	109778018	109778018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SARS	NM_006513	exon7	c.A934G	p.T312A	CGTGACACCCGTG	.	39.0	5.0	35.0	0.0	.	90
SCD5	79966	hgsc.bcm.edu;bcgsc.ca	37	4	83602015	83602015	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SCD5	NM_024906	exon3	c.A414G	p.S138S	CGTCTCTGAGTAC	.	86.0	4.0	133.0	0.0	.	91
SCN2B	6327	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118037686	118037686	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SCN2B	NM_004588	exon4	c.G564A	p.E188E	CTTCTGCTCTTTT	.	222.0	65.0	329.0	2.0	.	90
SCRN3	79634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175269041	175269041	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SCRN3	NM_024583	exon5	c.A752C	p.K251T	AGCACAAAGGTAA	.	76.0	21.0	107.0	0.0	.	91
SDHA	6389	broad.mit.edu;bcgsc.ca	37	5	251503	251503	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SDHA	NM_004168	exon13	c.A1714T	p.M572L	AACCTGATGCTGT	.	355.0	73.0	446.0	1.0	.	226
SEPT9	10801	hgsc.bcm.edu;bcgsc.ca	37	17	75471676	75471676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SEPT9	NM_001113495	exon1	c.T76C	p.S26P	CTGGATTCAGGGG	.	81.0	4.0	153.0	0.0	.	659
SERPINA10	51156	hgsc.bcm.edu;bcgsc.ca	37	14	94750485	94750485	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SERPINA10	NM_001100607	exon5	c.A1152G	p.Q384Q	TGTTCTTTGTAAA	.	62.0	4.0	91.0	0.0	.	228
SERPINA1	5265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94845816	94845816	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SERPINA1	NM_001127701	exon6	c.C1050T	p.P350P	CTTCAGGGGTGCC	.	53.0	6.0	79.0	0.0	.	226
SETD1B	23067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122247600	122247600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SETD1B	NM_015048	exon5	c.C749A	p.T250K	GTGGGACACCCTT	.	57.0	7.0	71.0	0.0	.	86
SFTA2	389376	hgsc.bcm.edu;bcgsc.ca	37	6	30899268	30899268	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SFTA2	NM_205854	exon3	c.A234G	p.T78T	CTGTCATGTGTTG	.	79.0	4.0	137.0	0.0	.	90
SHPRH	257218	broad.mit.edu;bcgsc.ca	37	6	146264289	146264289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SHPRH	NM_173082	exon9	c.T2228C	p.L743P	ACTCGAAGAGATG	.	129.0	7.0	161.0	1.0	.	92
SIGLEC15	284266	hgsc.bcm.edu;bcgsc.ca	37	18	43417043	43417043	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIGLEC15	NM_213602	exon2	c.A102G	p.T34T	CAACACAGAGGTG	.	71.0	4.0	77.0	0.0	.	90
SLC11A1	6556	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	219251389	219251389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC11A1	NM_000578	exon5	c.A425G	p.E142G	CCATCGAGCTAGC	.	24.0	4.0	43.0	0.0	.	93
SLC24A5	283652	hgsc.bcm.edu;bcgsc.ca	37	15	48413333	48413333	+	Missense_Mutation	SNP	C	C	A	rs201294244	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC24A5	NM_205850	exon1	c.C92A	p.S31Y	GGACCTCCCTGCC	.	55.0	4.0	60.0	0.0	C|0.999;T|0.001	90
SLC25A17	10478	hgsc.bcm.edu;bcgsc.ca	37	22	41173121	41173121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC25A17	NM_006358	exon7	c.T616C	p.F206L	TGATGAACACATC	.	63.0	5.0	103.0	0.0	.	90
SLC26A1	10861	hgsc.bcm.edu;bcgsc.ca	37	4	983816	983816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC26A1	NM_022042	exon3	c.T911C	p.L304P	GACACGAGTGTGG	.	72.0	5.0	78.0	0.0	.	91
SLC2A2	6514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	170732421	170732421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC2A2	NM_000340	exon3	c.A208C	p.I70L	ATGAGATTGTGGG	.	482.0	136.0	698.0	0.0	.	515
SLC5A8	160728	hgsc.bcm.edu;bcgsc.ca	37	12	101581168	101581168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC5A8	NM_145913	exon7	c.A959G	p.D320G	ACCTGGTCTGGTG	.	97.0	4.0	109.0	0.0	.	90
SMCHD1	23347	hgsc.bcm.edu;bcgsc.ca	37	18	2726476	2726476	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SMCHD1	NM_015295	exon22	c.T2727C	p.P909P	TCTGCCTGGCTTA	.	67.0	4.0	118.0	0.0	.	46
SMYD5	10322	hgsc.bcm.edu;bcgsc.ca	37	2	73446019	73446019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SMYD5	NM_006062	exon2	c.C127T	p.R43W	CTCATCCGGAAGG	.	124.0	5.0	224.0	0.0	.	226
SNF8	11267	hgsc.bcm.edu;bcgsc.ca	37	17	47022064	47022064	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SNF8	NM_007241	exon1	c.C33A	p.I11I	CTTGGCGATGGCG	.	41.0	4.0	58.0	0.0	.	90
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106970970	106970970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SORCS3	NM_014978	exon17	c.G2337T	p.K779N	ATCAAAGGACTGC	.	145.0	32.0	205.0	0.0	.	99
SPEN	23013	hgsc.bcm.edu;bcgsc.ca	37	1	16257506	16257506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPEN	NM_015001	exon11	c.A4771G	p.T1591A	GAGCTCACACGGA	.	68.0	4.0	88.0	0.0	.	298
SPG11	80208	hgsc.bcm.edu;bcgsc.ca	37	15	44859730	44859730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPG11	NM_025137	exon36	c.G6646A	p.E2216K	GCTTTTCACTGTC	.	73.0	4.0	142.0	0.0	.	95
SPG11	80208	hgsc.bcm.edu;bcgsc.ca	37	15	44903081	44903081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPG11	NM_025137	exon18	c.T3248C	p.L1083P	AGGGCCAGGAGGG	.	95.0	5.0	116.0	0.0	.	95
SPINT2	10653	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38782590	38782590	+	Missense_Mutation	SNP	G	G	A	rs200600070		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPINT2	NM_021102	exon7	c.G703A	p.V235I	CGCACCGTCTGGA	.	150.0	45.0	254.0	1.0	.	90
SPTB	6710	hgsc.bcm.edu;bcgsc.ca	37	14	65241212	65241212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPTB	NM_001024858	exon23	c.C4876T	p.H1626Y	GCAAATGTCGCTT	.	81.0	4.0	129.0	0.0	.	100
SRPX2	27286	hgsc.bcm.edu;bcgsc.ca	37	X	99901349	99901349	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SRPX2	NM_014467	exon2	c.T30C	p.A10A	AGGAGCTCTCTTT	.	71.0	4.0	49.0	0.0	.	132
ST5	6764	hgsc.bcm.edu;bcgsc.ca	37	11	8717087	8717087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ST5	NM_213618	exon19	c.A3302G	p.E1101G	CGCTGCTCAAAAA	.	60.0	4.0	80.0	0.0	.	227
STIP1	10963	hgsc.bcm.edu;bcgsc.ca	37	11	63970927	63970927	+	Silent	SNP	G	G	T	rs144539134	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STIP1	NM_006819	exon13	c.G1392T	p.A464A	GGAGGCGGCAGAC	.	67.0	4.0	94.0	0.0	G|1.000;A|0.000	93
SVEP1	79987	hgsc.bcm.edu;bcgsc.ca	37	9	113169313	113169313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SVEP1	NM_153366	exon38	c.A8567G	p.E2856G	GTGTATTCAATCT	.	78.0	4.0	106.0	0.0	.	75
SYNE1	23345	ucsc.edu;bcgsc.ca	37	6	152605298	152605298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYNE1	NM_182961	exon96	c.G18022T	p.D6008Y	TCTCATCCATCAA	.	38.0	4.0	75.0	0.0	.	607
T	6862	hgsc.bcm.edu;bcgsc.ca	37	6	166579280	166579280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	T	NM_003181	exon4	c.A520G	p.R174G	CAACTCTCACTAT	.	99.0	6.0	157.0	0.0	.	516
TBC1D2B	23102	hgsc.bcm.edu;bcgsc.ca	37	15	78308988	78308988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBC1D2B	NM_144572	exon8	c.G1675A	p.G559R	TGGGCCCCTGGTC	.	75.0	4.0	105.0	0.0	.	136
TBC1D2B	23102	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	78301403	78301403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBC1D2B	NM_144572	exon10	c.T2324C	p.L775P	GTAACGAGACACC	.	36.0	4.0	95.0	0.0	.	136
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179298474	179298474	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBC1D9B	NM_198868	exon15	c.C2472T	p.Y824Y	CACCATGTAAAGG	.	112.0	18.0	159.0	0.0	.	154
TBX10	347853	hgsc.bcm.edu;bcgsc.ca	37	11	67406938	67406938	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBX10	NM_005995	exon1	c.A6G	p.A2A	CCTACCTGCCATG	.	66.0	4.0	99.0	0.0	.	90
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46657993	46657993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TDRD6	NM_001168359	exon1	c.G2128A	p.A710T	CAGAAAGCCAAGA	.	197.0	60.0	272.0	0.0	.	138
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2593953	2593953	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMC2	NM_080751	exon14	c.C1857G	p.D619E	CTGGGACTTGGAG	.	313.0	68.0	513.0	0.0	.	93
TMEM104	54868	hgsc.bcm.edu;ucsc.edu	37	17	72784959	72784959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM104	NM_017728	exon4	c.A199G	p.M67V	GAGGCCATGGCTG	.	42.0	4.0	48.0	0.0	.	90
TMEM201	199953	hgsc.bcm.edu;bcgsc.ca	37	1	9669927	9669927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM201	NM_001130924	exon8	c.C1423T	p.P475S	AGCCGCCCACCAT	.	80.0	4.0	133.0	0.0	.	68
TMPRSS9	360200	hgsc.bcm.edu;bcgsc.ca	37	19	2396594	2396594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMPRSS9	NM_182973	exon2	c.G200T	p.R67L	GAATCCGGTGGAC	.	89.0	5.0	131.0	0.0	.	91
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	36875346	36875346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRANK1	NM_014831	exon21	c.T5596C	p.F1866L	AGTAAAACTGACT	.	110.0	5.0	189.0	0.0	.	24
TRAPPC8	22878	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29488317	29488317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRAPPC8	NM_014939	exon8	c.G1187T	p.S396I	ACTTTACTGCCAC	.	229.0	47.0	318.0	1.0	.	159
TRIM41	90933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180662368	180662368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRIM41	NM_201627	exon8	c.A1546G	p.S516G	GAATTTAGCTTCA	.	254.0	55.0	264.0	0.0	.	226
TSPAN32	10077	hgsc.bcm.edu;bcgsc.ca	37	11	2337500	2337500	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TSPAN32	NM_139022	exon7	c.G585A	p.Q195Q	ACACCAGCAGGTC	.	120.0	6.0	203.0	0.0	.	23
TTI2	80185	hgsc.bcm.edu;bcgsc.ca	37	8	33357923	33357923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001265581	exon7	c.T1345C	p.S449P	TAACAGACTCAGG	.	53.0	5.0	93.0	0.0	.	.
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179393915	179393915	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_001267550	exon360	c.T106563C	p.S35521S	TTGTGTAGAGACT	.	63.0	4.0	99.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179396537	179396537	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_001267550	exon358	c.T104805C	p.P34935P	TGTGAAAGGCTGC	.	144.0	43.0	242.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179458397	179458397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_001267550	exon298	c.C58630A	p.L19544I	CAAGTAGTTTAGA	.	201.0	56.0	269.0	0.0	.	636
TXLNB	167838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139564133	139564133	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TXLNB	NM_153235	exon10	c.A1585T	p.S529C	GAGAACTGCCTAT	.	174.0	47.0	267.0	0.0	.	91
TXNL4A	10907	hgsc.bcm.edu;bcgsc.ca	37	18	77748286	77748286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TXNL4A	NM_006701	exon1	c.C107A	p.P36H	CACGTAGGATCCC	.	67.0	5.0	122.0	0.0	.	90
UBR3	130507	hgsc.bcm.edu;bcgsc.ca	37	2	170897404	170897404	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UBR3	NM_172070	exon32	c.A4569G	p.E1523E	ATATGAAGAACAA	.	93.0	4.0	151.0	0.0	.	68
UGT2A1	10941	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	70504997	70504997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UGT2A1	NM_001252274	exon3	c.G965A	p.G322E	AGTTTTCCTAGTT	.	120.0	7.0	212.0	0.0	.	92
UROC1	131669	hgsc.bcm.edu;bcgsc.ca	37	3	126220121	126220121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UROC1	NM_001165974	exon11	c.A1085G	p.E362G	CTTGCTTCCCTGG	.	50.0	4.0	83.0	0.0	.	91
USP36	57602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76799931	76799931	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP36	NM_025090	exon16	c.G2346T	p.T782T	CAGCGCCGTCGAG	.	68.0	19.0	107.0	0.0	.	659
USP44	84101	hgsc.bcm.edu;bcgsc.ca	37	12	95922582	95922582	+	Splice_Site	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP44	NM_032147	exon4	c.1624+1G>A	.	TACTCACAGTTAC	.	100.0	5.0	176.0	0.0	.	658
USPL1	10208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	31232538	31232538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USPL1	NM_005800	exon9	c.T2324C	p.V775A	TCTGTGTTTCAGC	.	83.0	5.0	123.0	0.0	.	524
VCAN	1462	hgsc.bcm.edu;bcgsc.ca	37	5	82833999	82833999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VCAN	NM_004385	exon8	c.A5177G	p.K1726R	AAAGGAAGGAGGA	.	71.0	4.0	48.0	0.0	.	238
VPRBP	9730	hgsc.bcm.edu;bcgsc.ca	37	3	51456190	51456190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VPRBP	NM_014703	exon15	c.A3218G	p.Q1073R	TCCTCCTGTCCAC	.	74.0	4.0	125.0	0.0	.	92
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	62352482	62352482	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VPS13C	NM_020821	exon1	c.T92G	p.I31S	CCCCAGATGCCCA	.	50.0	15.0	84.0	0.0	.	92
WDR72	256764	hgsc.bcm.edu;bcgsc.ca	37	15	54003136	54003136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WDR72	NM_182758	exon9	c.G872A	p.S291N	TATATGCTTTTTG	.	52.0	4.0	47.0	0.0	.	92
WDR82	80335	hgsc.bcm.edu;bcgsc.ca	37	3	52293863	52293863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WDR82	NM_025222	exon6	c.A569G	p.Q190R	TCATACTGCATCT	.	35.0	5.0	47.0	0.0	.	226
ZBTB8B	728116	hgsc.bcm.edu;bcgsc.ca	37	1	32950817	32950817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001145720	exon4	c.A1286G	p.D429G	TTACAGACACACC	.	78.0	5.0	104.0	0.0	.	.
ZFAT	57623	hgsc.bcm.edu;bcgsc.ca	37	8	135545138	135545138	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZFAT	NM_020863	exon12	c.T3054C	p.P1018P	CTCATTAGGGTGC	.	59.0	4.0	80.0	0.0	.	90
ZMYM4	9202	hgsc.bcm.edu;bcgsc.ca	37	1	35846860	35846860	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZMYM4	NM_005095	exon8	c.A1182G	p.K394K	TTTTAGAGACATT	.	82.0	4.0	89.0	0.0	.	291
ZNF165	7718	hgsc.bcm.edu;bcgsc.ca	37	6	28057118	28057118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF165	NM_003447	exon4	c.T1328A	p.L443H	CACATCTTATTCG	.	89.0	4.0	139.0	0.0	.	90
ZNF177	7730	hgsc.bcm.edu;bcgsc.ca	37	19	9491942	9491942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF177	NM_001172651	exon6	c.A935G	p.Y312C	AGCCTTATGAGTG	.	91.0	4.0	165.0	0.0	.	91
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	22157552	22157552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF208	NM_007153	exon4	c.T284C	p.F95S	TTTTGGAAAGAAT	.	123.0	6.0	198.0	0.0	.	7
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44739253	44739253	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF227	NM_182490	exon6	c.A670C	p.K224Q	GAACCAAAACCCT	.	81.0	24.0	122.0	0.0	.	91
ZNF292	23036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	87955340	87955340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF292	NM_015021	exon7	c.T998C	p.L333P	TCTTCCTGATTAA	.	200.0	46.0	276.0	2.0	.	72
ZNF365	22891	hgsc.bcm.edu;bcgsc.ca	37	10	64415380	64415380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF365	NM_199452	exon4	c.T380C	p.V127A	CAGGAGTTTCAAT	.	34.0	4.0	42.0	0.0	.	92
ZNF418	147686	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	58438372	58438372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF418	NM_133460	exon4	c.A1177G	p.T393A	CTCTAGTGTGAAC	.	103.0	8.0	155.0	0.0	.	90
ZNF558	148156	hgsc.bcm.edu;bcgsc.ca	37	19	8922642	8922642	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF558	NM_144693	exon6	c.C524G	p.T175S	TCTCCAGTATGAA	.	79.0	4.0	134.0	0.0	.	90
ZNF611	81856	hgsc.bcm.edu;bcgsc.ca	37	19	53208496	53208496	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF611	NM_030972	exon7	c.T1812C	p.S604S	CCTGCGACTGAAG	.	88.0	4.0	145.0	0.0	.	91
ZNF664	144348	hgsc.bcm.edu;bcgsc.ca	37	12	124497322	124497322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF664	NM_152437	exon5	c.A631G	p.S211G	AGTCAGAGTTCGA	.	60.0	4.0	95.0	0.0	.	90
ZNF665	79788	hgsc.bcm.edu;bcgsc.ca	37	19	53667902	53667902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF665	NM_024733	exon4	c.C1841T	p.A614V	TGATTTGCAAGAT	.	98.0	6.0	139.0	0.0	.	70
ZNF688	146542	hgsc.bcm.edu;bcgsc.ca	37	16	30582420	30582420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF688	NM_145271	exon2	c.T221C	p.L74P	GAGATGAGGGCTG	.	64.0	4.0	94.0	0.0	.	68
ZNF707	286075	hgsc.bcm.edu;bcgsc.ca	37	8	144773301	144773301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF707	NM_001100598	exon4	c.T74C	p.L25P	CGTGTCTGGAACC	.	143.0	7.0	160.0	0.0	.	67
ZNF77	58492	hgsc.bcm.edu;bcgsc.ca	37	19	2933802	2933802	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF77	NM_021217	exon4	c.T1323C	p.C441C	TTTCCCACAATGC	.	65.0	4.0	117.0	0.0	.	91
ZNF790	388536	hgsc.bcm.edu;bcgsc.ca	37	19	37309733	37309733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF790	NM_206894	exon5	c.C1513A	p.P505T	CATATGGCCTCTT	.	71.0	4.0	125.0	0.0	.	92
ZNF79	7633	hgsc.bcm.edu;bcgsc.ca	37	9	130206630	130206630	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF79	NM_007135	exon5	c.A651G	p.G217G	CACTGGAGAGAAG	.	66.0	4.0	109.0	0.0	.	90
ZNF845	91664	hgsc.bcm.edu;bcgsc.ca	37	19	53855322	53855322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_138374	exon4	c.A1394G	p.K465R	GAGAGAAACCTTA	.	68.0	4.0	120.0	0.0	.	.
ZNF90	7643	hgsc.bcm.edu;bcgsc.ca	37	19	20229869	20229869	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF90	NM_007138	exon4	c.T1506C	p.I502I	GATAATTCACAGT	.	56.0	4.0	74.0	0.0	.	48
ZNF93	81931	ucsc.edu;bcgsc.ca	37	19	20045260	20045260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF93	NM_031218	exon4	c.A1496G	p.H499R	CTAAACATAAGAA	.	32.0	4.0	36.0	0.0	.	91
ZSCAN20	7579	hgsc.bcm.edu;bcgsc.ca	37	1	33955141	33955141	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZSCAN20	NM_145238	exon5	c.T705C	p.H235H	CAAACATGCTGAG	.	58.0	4.0	82.0	0.0	.	93
ZSWIM6	57688	hgsc.bcm.edu;bcgsc.ca	37	5	60835544	60835544	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_020928	exon12	c.A2661G	p.P887P	TTTGCCAGACATC	.	98.0	5.0	139.0	0.0	.	.
ZSWIM6	57688	hgsc.bcm.edu;bcgsc.ca	37	5	60839556	60839556	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_020928	exon14	c.T3060C	p.A1020A	CGACGCTGCTACG	.	60.0	4.0	70.0	0.0	.	.