Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ADGB 79747 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 147109747 147109747 + Splice_Site SNP G G A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . . NM_024694 exon33 c.4537+1G>A . ACATTCGTAAGTA . 53.0 22.0 51.0 0.0 . . ANKHD1 54882 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 139917173 139917173 + Silent SNP A A T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . ANKHD1 NM_017747 exon31 c.A7227T p.S2409S TGTGTCAGGTACA . 130.0 37.0 121.0 1.0 . 185 ANKHD1 54882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 139889380 139889380 + Silent SNP T T C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . ANKHD1 NM_017747 exon21 c.T3924C p.C1308C ATTTTGTGAACTC . 165.0 56.0 104.0 0.0 . 185 APAF1 317 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 99060130 99060130 + Missense_Mutation SNP C C A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . APAF1 NM_181868 exon9 c.C1357A p.L453I AGCCAGCTTCAGG . 183.0 61.0 161.0 1.0 . 229 APBA2 321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 29398965 29398965 + Silent SNP C C T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . APBA2 NM_005503 exon11 c.C1860T p.S620S CATGTCCATCAAT . 121.0 40.0 101.0 0.0 . 90 ATXN1 6310 broad.mit.edu;mdanderson.org 37 6 16327891 16327891 + Missense_Mutation SNP C C A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . ATXN1 NM_001128164 exon7 c.G651T p.Q217H CTGCTGCTGCTGC . 58.0 6.0 71.0 0.0 . 93 BBX 56987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 107510138 107510138 + Missense_Mutation SNP C C T rs138504832 alternate_allele TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . BBX NM_001142568 exon15 c.C2345T p.P782L TTCACCCTACAGA . 230.0 53.0 215.0 0.0 C|1.000;A|0.000 94 C9orf64 84267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 86571114 86571114 + Missense_Mutation SNP G G A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . C9orf64 NM_032307 exon1 c.C302T p.S101F CACAGGGACCAGT . 25.0 10.0 27.0 0.0 . 90 CACNG7 59284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 54417766 54417766 + Missense_Mutation SNP G G T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . CACNG7 NM_031896 exon2 c.G209T p.G70V AGAAAGGTCGCTG . 127.0 31.0 140.0 0.0 . 91 CDHR1 92211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 85971460 85971460 + Silent SNP T T A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . CDHR1 NM_001171971 exon14 c.T1542A p.T514T TGGGACTGGGGCA . 88.0 24.0 83.0 0.0 . 91 CEP350 9857 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 180062616 180062617 + Frame_Shift_Ins INS - - T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . CEP350 NM_014810 exon34 c.7376_7377insT p.K2459fs AACTCAAGTCCCC . 325.0 154.0 252.0 0.0 . 26 COPG1 22820 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 128973580 128973580 + Silent SNP C C A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . . NM_016128 exon6 c.C393A p.I131I CCAGATCACTGAT . 45.0 11.0 41.0 0.0 . . CYP4A22 284541 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 47609480 47609481 + Frame_Shift_Ins INS - - T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . CYP4A22 NM_001010969 exon6 c.682_683insT p.V228fs AGCCTGGTTTTTT . 156.0 47.0 189.0 0.0 . 139 DEPDC1 55635 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 68944871 68944874 + Frame_Shift_Del DEL GTAA GTAA - novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 GTAA GTAA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . DEPDC1 NM_001114120 exon10 c.2065_2068del p.689_690del CAGTCTGTAAGTA . 173.0 51.0 209.0 0.0 . 90 DFNA5 1687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 24758722 24758722 + Missense_Mutation SNP T T C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . DFNA5 NM_001127453 exon4 c.A520G p.M174V CCTGCATGTGCTC . 27.0 15.0 51.0 0.0 . 91 DNAH10 196385 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 124414218 124414218 + Missense_Mutation SNP T T C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . DNAH10 NM_207437 exon71 c.T12170C p.M4057T TCTGCATGGAAAT . 111.0 38.0 114.0 1.0 . 95 DNAH12 201625 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 57454649 57454649 + Silent SNP T T C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . DNAH12 NM_178504 exon17 c.A2163G p.E721E AAACTCTTCCACA . 131.0 50.0 114.0 1.0 . 47 DPYD 1806 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 98164998 98164998 + Missense_Mutation SNP G G A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . DPYD NM_000110 exon6 c.C589T p.P197S TTGCAGGCCCAGC . 162.0 51.0 145.0 0.0 . 278 EDIL3 10085 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 83680126 83680126 + Missense_Mutation SNP C C T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . EDIL3 NM_005711 exon1 c.G67A p.G23S CCTTACCTTTGCC . 46.0 15.0 36.0 0.0 . 131 EPHA1 2041 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 143095957 143095957 + Missense_Mutation SNP G G T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . EPHA1 NM_005232 exon6 c.C1073A p.T358K CCCCCCGTATCTG . 47.0 23.0 32.0 0.0 . 1436 EPHA1 2041 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 143095959 143095959 + Missense_Mutation SNP A A T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . EPHA1 NM_005232 exon6 c.T1071A p.D357E CCCCGTATCTGCT . 46.0 22.0 32.0 0.0 . 1436 EXOSC3 51010 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 37784995 37784995 + Missense_Mutation SNP C C T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . EXOSC3 NM_016042 exon1 c.G47A p.R16K CGCGCCCTGCTGC . 42.0 18.0 63.0 1.0 . 135 EYS 346007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 66044982 66044982 + Missense_Mutation SNP G G T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . EYS NM_001142801 exon11 c.C1657A p.L553I AACATAGATACCG . 143.0 53.0 140.0 0.0 . 660 FAM127C 441518 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 134156305 134156305 + Missense_Mutation SNP G G A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . FAM127C NM_001078173 exon1 c.C185T p.A62V TTCAGGGCGTCGT . 160.0 54.0 137.0 0.0 . 62 FAM184A 79632 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 119345814 119345814 + Missense_Mutation SNP A A C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . FAM184A NM_024581 exon2 c.T324G p.I108M AACTTGAATCTTT . 231.0 73.0 206.0 0.0 . 519 FAM47A 158724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 34149524 34149524 + Missense_Mutation SNP G G C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . FAM47A NM_203408 exon1 c.C872G p.T291R GGCTCTGTGGGTT . 136.0 43.0 156.0 0.0 . 134 GPR157 80045 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 9188904 9188904 + Silent SNP G G A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . GPR157 NM_024980 exon1 c.C183T p.A61A GGAGGCGGCCGAG . 43.0 17.0 28.0 0.0 . 514 GPR87 53836 hgsc.bcm.edu;broad.mit.edu 37 3 151017871 151017871 + Silent SNP C C A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . GPR87 NM_023915 exon2 c.G18T p.T6T TGCAAGCGTCAAG . 84.0 4.0 84.0 0.0 . 153 HAPLN2 60484 broad.mit.edu;mdanderson.org 37 1 156594411 156594411 + Missense_Mutation SNP A A G novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . HAPLN2 NM_021817 exon6 c.A575G p.D192G GTCTGGACTGGTG . 55.0 8.0 29.0 0.0 . 90 HDC 3067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 50534990 50534990 + Missense_Mutation SNP G G A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . HDC NM_002112 exon12 c.C1456T p.R486W CAACCCGAGGGCT . 60.0 17.0 69.0 0.0 . 156 HS6ST3 266722 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 97484795 97484795 + Silent SNP C C T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . HS6ST3 NM_153456 exon2 c.C759T p.S253S CCTGAGCGAGTGG . 89.0 27.0 87.0 0.0 . 92 HSPA5 3309 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 128001549 128001549 + Missense_Mutation SNP A A C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . HSPA5 NM_005347 exon5 c.T667G p.F223V GGTCAAACACCAG . 90.0 48.0 101.0 1.0 . 230 ITGB3BP 23421 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 63974243 63974243 + Splice_Site SNP T T C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . ITGB3BP NM_014288 exon3 c.6-2A>G . TAACACTACAAAC . 311.0 99.0 256.0 0.0 . 90 KAT5 10524 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 65482196 65482196 + Missense_Mutation SNP G G T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . KAT5 NM_182710 exon7 c.G921T p.K307N TCTCAAGTGTCTT . 162.0 53.0 162.0 0.0 . 90 KIF20B 9585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 91522476 91522476 + Missense_Mutation SNP A A G novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . KIF20B NM_016195 exon29 c.A4753G p.I1585V TTAGAGATTCAAT . 64.0 15.0 73.0 0.0 . 93 L1CAM 3897 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153136308 153136308 + Missense_Mutation SNP C C A rs202000092 alternate_allele TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . L1CAM NM_000425 exon6 c.G631T p.A211S AGTGGGCGTGGCA . 218.0 71.0 225.0 1.0 . 138 LAD1 3898 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 201351823 201351823 + Silent SNP C C T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . LAD1 NM_005558 exon8 c.G1431A p.L477L GATCCACAGGTTG . 53.0 16.0 55.0 0.0 . 90 LDB1 8861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 103870721 103870721 + Missense_Mutation SNP T T C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . LDB1 NM_001113407 exon5 c.A257G p.D86G AGATTGTCACACT . 91.0 39.0 95.0 0.0 . 289 LHB 3972 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 49519808 49519808 + Missense_Mutation SNP G G T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . LHB NM_000894 exon2 c.C179A p.T60N ACCATGGTGGGGC . 88.0 43.0 82.0 0.0 . 90 LPPR4 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 99771771 99771771 + Silent SNP T T C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . LPPR4 NM_014839 exon7 c.T1497C p.N499N TGGCAATCAGTAC . 96.0 38.0 93.0 0.0 . 93 MAOB 4129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 X 43655030 43655030 + Nonsense_Mutation SNP T T A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . MAOB NM_000898 exon7 c.A724T p.R242X TTTCTCTTGTCTG . 116.0 44.0 121.0 0.0 . 555 MAP3K4 4216 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 6 161470524 161470524 + Nonsense_Mutation SNP T T G novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . MAP3K4 NM_006724 exon3 c.T1220G p.L407X AGAAATTAAGGAT . 171.0 64.0 164.0 0.0 . 548 MATN2 4147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 99045370 99045370 + Silent SNP T T C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . MATN2 NM_002380 exon17 c.T2682C p.S894S ACGGTCTACACAA . 190.0 52.0 141.0 0.0 . 24 MIR320B2 100313769 ucsc.edu;mdanderson.org 37 1 224444769 224444769 + RNA SNP T T C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . . . . . . CCCAGCTTTTCCC . 537.0 141.0 379.0 2.0 . . MRGPRE 116534 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 3249346 3249346 + Missense_Mutation SNP G G T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . MRGPRE NM_001039165 exon2 c.C684A p.F228L GCCGCAGAAGAGG . 32.0 13.0 38.0 0.0 . 136 MRPS15 64960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 36923570 36923570 + Missense_Mutation SNP G G C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . MRPS15 NM_031280 exon6 c.C398G p.S133C TTGACAGACAAGG . 121.0 35.0 104.0 0.0 . 91 MTMR8 55613 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 63548663 63548663 + Silent SNP G G T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . MTMR8 NM_017677 exon12 c.C1470A p.P490P GTTGTAGGGCACA . 35.0 12.0 26.0 0.0 . 195 MXRA5 25878 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 3227926 3227926 + Missense_Mutation SNP G G A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . MXRA5 NM_015419 exon7 c.C8318T p.S2773L AGATGCGACTTAT . 237.0 74.0 276.0 1.0 . 136 MYO3A 53904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 26414368 26414368 + Missense_Mutation SNP G G T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . MYO3A NM_017433 exon19 c.G1945T p.A649S CAAGAAGCTCTCA . 127.0 34.0 165.0 0.0 . 1007 MYOT 9499 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 137219116 137219116 + Missense_Mutation SNP G G T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . MYOT NM_006790 exon7 c.G860T p.G287V TAAATGGAAGAAC . 185.0 55.0 169.0 0.0 . 153 NEURL4 84461 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7230299 7230299 + Missense_Mutation SNP C C G novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . NEURL4 NM_001005408 exon4 c.G823C p.V275L TGCTCACCACCTC . 28.0 6.0 56.0 0.0 . 46 NFE2L2 4780 hgsc.bcm.edu;bcgsc.ca 37 2 178098960 178098974 + In_Frame_Del DEL CTATATCTTGCCTCC CTATATCTTGCCTCC - novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 CTATATCTTGCCTCC CTATATCTTGCCTCC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . NFE2L2 NM_006164 exon2 c.71_85del p.24_29del CAAGATCTATATC . 185.0 125.0 128.0 0.0 . 90 NLGN1 22871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 173998534 173998534 + Missense_Mutation SNP C C A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . NLGN1 NM_014932 exon7 c.C1913A p.P638H TCAGACCTACGAG . 148.0 40.0 166.0 0.0 . 231 NOP56 10528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 2635458 2635458 + Missense_Mutation SNP A A G novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . NOP56 NM_006392 exon5 c.A434G p.Q145R AAGCACAGCTGGG . 50.0 19.0 60.0 0.0 . 92 NOS1 4842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 117723945 117723945 + Silent SNP C C T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . NOS1 NM_000620 exon6 c.G1254A p.S418S ACAGCGCGAGGCA . 122.0 32.0 157.0 0.0 . 154 NXF2 56001 broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 101615541 101615541 + Missense_Mutation SNP G G A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . NXF2 NM_022053 exon23 c.C1862T p.A621V TTGAAGGCCTCCG . 887.0 73.0 813.0 1.0 . 46 OCLN 100506658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 68805338 68805338 + Missense_Mutation SNP A A T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . OCLN NM_001205254 exon3 c.A421T p.M141L GGCTTCATGTTGG . 318.0 111.0 289.0 0.0 . 68 ODC1 4953 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 10581663 10581663 + Missense_Mutation SNP T T C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . ODC1 NM_002539 exon11 c.A1213G p.I405V AGTAGATCGTCGG . 140.0 98.0 118.0 0.0 . 69 OR5H14 403273 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 97868346 97868346 + Silent SNP C C A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . OR5H14 NM_001005514 exon1 c.C117A p.I39I CACCATCATGGGG . 565.0 189.0 555.0 0.0 . 91 PALM3 342979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 14167259 14167259 + Missense_Mutation SNP C C A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . PALM3 NM_001145028 exon4 c.G336T p.R112S GCTGGGCCTGCCT . 56.0 30.0 79.0 0.0 . 24 PCDHA10 56139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140235699 140235699 + Silent SNP C C T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . PCDHA10 NM_031859 exon1 c.C66T p.A22A CGCAGCCTGGGAG . 76.0 52.0 64.0 0.0 . 99 PHF2 5253 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 96415567 96415567 + Missense_Mutation SNP T T G novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . PHF2 NM_005392 exon6 c.T709G p.C237G AAGTACTGCCTAA . 22.0 9.0 32.0 0.0 . 91 PIN4 5303 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 71417258 71417258 + Missense_Mutation SNP C C A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . PIN4 NM_006223 exon4 c.C353A p.P118Q TGGGACCATTTCA . 308.0 94.0 270.0 1.0 . 130 PLK1S1 55857 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 21142904 21142904 + RNA SNP T T A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . . . . . . TTTATCTGAAGGC . 110.0 39.0 100.0 0.0 . . PPEF2 5470 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 76794280 76794280 + Missense_Mutation SNP C C A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . PPEF2 NM_006239 exon12 c.G1506T p.K502N ACCCACCTTGCGG . 92.0 21.0 76.0 0.0 . 228 RAB6A 5870 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 73431941 73431941 + Missense_Mutation SNP T T C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . RAB6A NM_002869 exon3 c.A133G p.T45A CAATTGTTGCCTG . 118.0 31.0 113.0 0.0 . 227 ROBO1 6091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 78685014 78685014 + Silent SNP A A G novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . ROBO1 NM_002941 exon23 c.T3282C p.S1094S CTCGCCAGAGTCC . 178.0 60.0 178.0 0.0 . 67 RP1 6101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 55539906 55539906 + Missense_Mutation SNP A A G novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . RP1 NM_006269 exon4 c.A3464G p.N1155S CTACCAACAAATC . 244.0 58.0 196.0 0.0 . 102 SETD2 29072 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 47098921 47098921 + Missense_Mutation SNP G G A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . SETD2 NM_014159 exon15 c.C6353T p.T2118I TCCTCTGTAGAAA . 96.0 24.0 98.0 0.0 . 1273 SLC22A10 387775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 63059095 63059095 + Silent SNP A A T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . SLC22A10 NM_001039752 exon2 c.A486T p.I162I CATCATAGGTGGC . 115.0 33.0 110.0 0.0 . 92 SORL1 6653 broad.mit.edu;bcgsc.ca 37 11 121440944 121440944 + Missense_Mutation SNP A A G novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . SORL1 NM_003105 exon23 c.A3302G p.N1101S TTGACAACGACTG . 88.0 6.0 74.0 0.0 . 228 SPTBN5 51332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 42158099 42158099 + Silent SNP C C T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . SPTBN5 NM_016642 exon39 c.G6720A p.E2240E CTTCACCTCCTGT . 70.0 20.0 61.0 0.0 . 91 TENM3 55714 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 183659598 183659598 + Missense_Mutation SNP T T C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . . NM_001080477 exon17 c.T3280C p.W1094R ACTCTGTGGGAAA . 155.0 48.0 136.0 0.0 . . TFAP2A 7020 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 10398750 10398750 + Missense_Mutation SNP G G T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . TFAP2A NM_003220 exon7 c.C1214A p.A405D TTGAGGGCCTCGG . 151.0 60.0 150.0 0.0 . 91 THSD7B 80731 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 137814010 137814010 + Missense_Mutation SNP G G C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . THSD7B . . . . TGTACAGGAGACT . 49.0 30.0 78.0 0.0 . 75 TNFRSF1A 7132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 6443355 6443355 + Missense_Mutation SNP G G T novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . TNFRSF1A NM_001065 exon2 c.C95A p.P32H AGGTGAGGGACCA . 116.0 43.0 117.0 0.0 . 659 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 7578271 7578271 + Missense_Mutation SNP T T C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b TP53,head_neck,carcinoma,0 TP53 NM_000546 exon6 c.A578G p.H193R ATAAGATGCTGAG . 66.0 32.0 121.0 1.0 . 70225 WDR36 134430 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 110456277 110456277 + Missense_Mutation SNP C C A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . WDR36 NM_139281 exon18 c.C2156A p.T719N CTGGTACTTGTCA . 104.0 26.0 92.0 0.0 . 92 ZBTB9 221504 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 6 33424110 33424110 + Missense_Mutation SNP T T A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . ZBTB9 NM_152735 exon2 c.T1233A p.F411L GCCTTTTGGCTGT . 44.0 8.0 44.0 0.0 . 90 ZC3HAV1 56829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 138764382 138764382 + Silent SNP C C A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . ZC3HAV1 NM_024625 exon4 c.G1305T p.V435V TGTGGCCACTCCA . 240.0 112.0 188.0 0.0 . 91 ZFX 7543 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 24229378 24229378 + Missense_Mutation SNP C C A novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . ZFX NM_003410 exon10 c.C2303A p.S768Y TTATTTCCATTCA . 310.0 111.0 352.0 0.0 . 132 ZNF354B 117608 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 178310382 178310382 + Missense_Mutation SNP G G C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . ZNF354B NM_058230 exon5 c.G929C p.R310T GTCGAAGGTCTGG . 203.0 63.0 201.0 0.0 . 92 ZNF559 84527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9453375 9453375 + Missense_Mutation SNP A A C novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . ZNF559 NM_001202406 exon6 c.A1440C p.K480N TGGGAAAGCCTTC . 87.0 47.0 144.0 0.0 . 91 MLL2 8085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 49427419 49427420 + Missense_Mutation DNP CC CC AT novel TCGA-FV-A3I1-01A-11D-A22F-10 TCGA-FV-A3I1-10A-01D-A22F-10 CC CC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 992d9566-b1da-421a-bf36-d23382b115fa 5cce4752-30c6-4bc7-8c28-90617e8dcd3b . . . . . p.G3690I AGGGATCCAGCCC . 52.0 14.0 58.0 0.0 . .