Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq AADAC 13 ucsc.edu;bcgsc.ca 37 3 151545702 151545702 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . AADAC NM_001086 exon5 c.C942A p.F314L AGGGTTCCTAGAT . 35.0 4.0 39.0 0.0 . 280 ABCC8 6833 ucsc.edu;bcgsc.ca 37 11 17464837 17464837 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ABCC8 NM_000352 exon9 c.T1355C p.L452P TAGTAGAGGAGAA . 40.0 4.0 28.0 0.0 . 91 ACADVL 37 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 7124266 7124266 + Silent SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ACADVL NM_001270447 exon7 c.T435C p.N145N CAAGAATGACGCT . 40.0 9.0 52.0 0.0 . 93 ACAN 176 ucsc.edu;bcgsc.ca 37 15 89386656 89386656 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ACAN NM_001135 exon6 c.G828A p.L276L GCGGCTGGGTGCC . 44.0 4.0 51.0 0.0 . 25 ACVRL1 94 ucsc.edu;bcgsc.ca 37 12 52309854 52309854 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ACVRL1 NM_000020 exon8 c.C1083T p.Y361Y CGATTACCTGGAC . 29.0 4.0 25.0 0.0 . 521 ADAM32 203102 ucsc.edu;bcgsc.ca 37 8 39022554 39022554 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ADAM32 NM_145004 exon9 c.C672T p.F224F GATGTTCACCCAA . 30.0 4.0 104.0 0.0 . 227 ADAMTS14 140766 ucsc.edu;bcgsc.ca 37 10 72511295 72511295 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ADAMTS14 NM_139155 exon17 c.A2498G p.E833G TCCATGAGGACCT . 38.0 4.0 39.0 0.0 . 232 ADAMTS18 170692 ucsc.edu;bcgsc.ca 37 16 77389917 77389917 + Silent SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ADAMTS18 NM_199355 exon9 c.C1380A p.I460I AGACATGATATTG . 41.0 4.0 87.0 0.0 . 1036 ADAMTS8 11095 ucsc.edu;bcgsc.ca 37 11 130278752 130278752 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ADAMTS8 NM_007037 exon7 c.C1834T p.P612S ACTTGGGGACCCA . 28.0 4.0 50.0 0.0 . 226 ADAMTSL3 57188 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 84651559 84651559 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ADAMTSL3 NM_207517 exon21 c.T3179C p.L1060S CTCTGTTAGGCCA . 43.0 20.0 66.0 1.0 . 1153 ADSS 159 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 244595870 244595870 + Missense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ADSS NM_001126 exon4 c.T383A p.I128N GATATAATAAGCC . 783.0 32.0 572.0 0.0 . 229 AGPAT3 56894 broad.mit.edu;ucsc.edu 37 21 45397993 45397993 + Nonsense_Mutation SNP C C G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . AGPAT3 NM_001037553 exon7 c.C834G p.Y278X ACTGTACCAGGAG . 10.0 5.0 23.0 0.0 . 90 AHNAK 79026 ucsc.edu;bcgsc.ca 37 11 62288148 62288148 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . AHNAK NM_001620 exon5 c.T13741C p.F4581L TTTTAAATTTGGG . 36.0 4.0 82.0 1.0 . 109 AKAP13 11214 ucsc.edu;bcgsc.ca 37 15 86273744 86273744 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . AKAP13 NM_006738 exon30 c.A7100G p.E2367G CTGCAGAACAACT . 39.0 4.0 35.0 0.0 . 258 ALB 213 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 74283297 74283298 + Frame_Shift_Ins INS - - T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ALB NM_000477 exon11 c.1339_1340insT p.L447fs CCAACTCTTGTAG . 51.0 42.0 112.0 0.0 . 96 ALB 213 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 74283386 74283387 + Frame_Shift_Del DEL TG TG - novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 TG TG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ALB NM_000477 exon11 c.1428_1428del p.476_476del AGACTATGTGAGT . 23.0 20.0 61.0 0.0 . 96 ALK 238 ucsc.edu;bcgsc.ca 37 2 29445233 29445233 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ALK NM_004304 exon22 c.C3492T p.F1164F CATGAGGAAATCC . 26.0 4.0 43.0 0.0 . 3833 ALK 238 ucsc.edu;bcgsc.ca 37 2 29455312 29455312 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ALK NM_004304 exon15 c.G2490T p.M830I ATCCTTCATCTGA . 18.0 5.0 33.0 0.0 . 3833 ALPI 248 broad.mit.edu;bcgsc.ca 37 2 233322981 233322981 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ALPI NM_001631 exon9 c.A1046G p.E349G TCACTGAGGCGGT . 99.0 5.0 100.0 0.0 . 90 AMBRA1 55626 ucsc.edu;bcgsc.ca 37 11 46430118 46430118 + Silent SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . AMBRA1 NM_001267782 exon19 c.A3357G p.T1119T AGTCTGTGTTTCG . 55.0 5.0 50.0 0.0 . 136 AMPD1 270 ucsc.edu;bcgsc.ca 37 1 115217493 115217493 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . AMPD1 NM_000036 exon13 c.G1779A p.K593K TCGTTCCCTGGGG . 50.0 6.0 65.0 0.0 . 293 ANKMY1 51281 ucsc.edu;bcgsc.ca 37 2 241492433 241492433 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ANKMY1 NM_017844 exon4 c.G378A p.L126L GGTACCCAGGCCA . 51.0 6.0 51.0 0.0 . 90 ANKRD10 55608 ucsc.edu;bcgsc.ca 37 13 111536109 111536109 + Silent SNP C C T rs201341958 TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ANKRD10 NM_017664 exon5 c.G723A p.T241T GCCATTCGTGAGT . 20.0 4.0 36.0 0.0 C|0.999;T|0.001 226 ANKRD26 22852 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 27389068 27389068 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ANKRD26 NM_014915 exon1 c.A188G p.Q63R ATCTGCTGCACTT . 50.0 7.0 42.0 0.0 . 138 ANKRD30B 374860 broad.mit.edu;bcgsc.ca 37 18 14850376 14850376 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ANKRD30B NM_001145029 exon35 c.A3202G p.N1068D AATTTGAATCAGG . 174.0 9.0 251.0 0.0 . 24 ANKS6 203286 ucsc.edu;bcgsc.ca 37 9 101552846 101552846 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ANKS6 NM_173551 exon2 c.G402A p.G134G ATCAGCCCCGTGA . 44.0 4.0 106.0 0.0 . 92 AOC2 314 ucsc.edu;bcgsc.ca 37 17 41001156 41001156 + Missense_Mutation SNP C C T rs138179430 alternate_allele TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . AOC2 NM_009590 exon2 c.C1642T p.P548S GCTGCCCCCTGGA . 47.0 4.0 45.0 0.0 C|1.000;A|0.000 92 AP3M2 10947 ucsc.edu;bcgsc.ca 37 8 42012433 42012433 + Silent SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . AP3M2 NM_001134296 exon3 c.T228C p.P76P CCCCCCTCTGTTT . 38.0 4.0 110.0 1.0 . 90 APOBEC3G 60489 ucsc.edu;bcgsc.ca 37 22 39482347 39482347 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . APOBEC3G NM_021822 exon6 c.C799A p.P267T GTGATTCCCTTTT . 39.0 4.0 48.0 0.0 . 227 ARHGAP27 201176 ucsc.edu;bcgsc.ca 37 17 43475409 43475409 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ARHGAP27 NM_199282 exon10 c.G725A p.R242Q CGGCTCCGTAGCT . 41.0 4.0 46.0 0.0 . 90 ARHGAP28 79822 ucsc.edu;bcgsc.ca 37 18 6851048 6851048 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ARHGAP28 NM_001010000 exon3 c.G82A p.G28S ACCTGTGGCAACC . 42.0 4.0 58.0 0.0 . 91 ARHGEF12 23365 ucsc.edu;bcgsc.ca 37 11 120329986 120329986 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ARHGEF12 NM_015313 exon26 c.A2484G p.L828L AGAGCTACGGAAA . 32.0 4.0 52.0 0.0 . 661 ARHGEF17 9828 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 73022229 73022229 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ARHGEF17 NM_014786 exon1 c.C2546T p.P849L GGGAGCCCATCCG . 45.0 15.0 91.0 0.0 . 227 ARNT2 9915 ucsc.edu;bcgsc.ca 37 15 80800523 80800523 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ARNT2 NM_014862 exon6 c.A649G p.T217A ACTGGGACGGTCA . 57.0 5.0 79.0 0.0 . 175 ASPG 374569 ucsc.edu;bcgsc.ca 37 14 104570684 104570684 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . NM_001080464 exon8 c.A797G p.E266G TCATGGAGACCTT . 29.0 4.0 53.0 0.0 . . ASXL1 171023 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 31021262 31021262 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ASXL1 NM_015338 exon11 c.A1261G p.R421G AGAGCCAGAAGGA . 42.0 5.0 51.0 0.0 . 2057 ATCAY 85300 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 3905457 3905457 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ATCAY NM_033064 exon4 c.C162T p.N54N TTTCAACGGAGCG . 42.0 10.0 61.0 0.0 . 67 ATM 472 ucsc.edu;bcgsc.ca 37 11 108121612 108121612 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ATM NM_000051 exon10 c.A1420G p.S474G CTAGAAAGCTCAC . 44.0 5.0 70.0 0.0 . 3419 ATP4A 495 ucsc.edu;bcgsc.ca 37 19 36050920 36050920 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ATP4A NM_000704 exon7 c.C843T p.I281I CGATGCGATGCGC . 43.0 4.0 70.0 0.0 . 91 AZU1 566 ucsc.edu;bcgsc.ca 37 19 831774 831774 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . AZU1 NM_001700 exon5 c.C653T p.S218F CCTTTTCCCTGGG . 32.0 4.0 67.0 0.0 . 91 BIK 638 ucsc.edu;bcgsc.ca 37 22 43520125 43520125 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . BIK NM_001197 exon2 c.A97G p.T33A GGCATGACTGACT . 37.0 4.0 61.0 0.0 . 651 BLOC1S2 282991 ucsc.edu;bcgsc.ca 37 10 102045885 102045885 + Silent SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . BLOC1S2 NM_173809 exon2 c.A141G p.K47K GGCCATTTTGGAG . 36.0 4.0 30.0 0.0 . 91 BRCA2 675 ucsc.edu;bcgsc.ca 37 13 32931936 32931936 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . BRCA2 NM_000059 exon16 c.T7675C p.S2559P GCAGAGTCTTTTC . 37.0 5.0 65.0 1.0 . 3153 BRF1 2972 ucsc.edu;bcgsc.ca 37 14 105739127 105739127 + Missense_Mutation SNP G G T rs199564741 alternate_allele TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . BRF1 NM_001519 exon3 c.C370A p.R124S GGCCGCGGGTCAG . 23.0 4.0 44.0 0.0 G|0.999;A|0.000 155 BSN 8927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49694892 49694892 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . BSN NM_003458 exon5 c.C7903T p.R2635C CTTCCCCGCCACT . 34.0 7.0 54.0 0.0 . 97 C2CD2L 9854 ucsc.edu;bcgsc.ca 37 11 118983537 118983537 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . C2CD2L NM_014807 exon10 c.C1340A p.T447N TTGTCACCACAGT . 39.0 5.0 41.0 0.0 . 68 C3orf30 152405 ucsc.edu;bcgsc.ca 37 3 118870136 118870136 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . C3orf30 NM_152539 exon3 c.A1608G p.V536V CCAGGTATAGAAT . 40.0 5.0 41.0 0.0 . 92 C9orf91 203197 ucsc.edu;bcgsc.ca 37 9 117386639 117386639 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . C9orf91 NM_153045 exon3 c.A116G p.N39S TCCACAATGGCCA . 35.0 4.0 81.0 0.0 . 91 CABS1 85438 ucsc.edu;bcgsc.ca 37 4 71201464 71201464 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CABS1 NM_033122 exon1 c.A708G p.E236E TGAAGAAGAGAAA . 42.0 4.0 88.0 0.0 . 93 CAMSAP1 157922 ucsc.edu;bcgsc.ca 37 9 138713378 138713378 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CAMSAP1 NM_015447 exon11 c.G3129T p.Q1043H TTGCTGCTGAGAG . 41.0 4.0 63.0 0.0 . 92 CAPG 822 ucsc.edu;bcgsc.ca 37 2 85628952 85628952 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CAPG NM_001256140 exon3 c.T152C p.L51P TTGTGCAGCACTA . 61.0 7.0 87.0 0.0 . 204 CASP4 837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 104820474 104820474 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CASP4 NM_001225 exon5 c.A577G p.T193A GTCTGGTAGCAAA . 50.0 10.0 101.0 0.0 . 660 CBFA2T3 863 ucsc.edu;bcgsc.ca 37 16 88949122 88949122 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CBFA2T3 NM_005187 exon8 c.G1165A p.E389K CACGCTCTGTGAG . 31.0 6.0 41.0 0.0 . 722 CCDC14 64770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 123665744 123665744 + Missense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CCDC14 NM_022757 exon7 c.T1128A p.D376E CTGTACATCCTTC . 63.0 9.0 74.0 0.0 . 68 CCDC171 203238 ucsc.edu;bcgsc.ca 37 9 15971645 15971645 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . NM_173550 exon26 c.A3792G p.S1264S TCCTTCAAGAGCT . 31.0 4.0 77.0 0.0 . . CCDC88B 283234 ucsc.edu;bcgsc.ca 37 11 64111852 64111852 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CCDC88B NM_032251 exon14 c.A1839G p.K613K GACCAAAATTCAG . 40.0 4.0 96.0 0.0 . 94 CCT4 10575 ucsc.edu;bcgsc.ca 37 2 62099701 62099701 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CCT4 NM_006430 exon11 c.G1148A p.G383E GTTTTTCCAGGGC . 57.0 6.0 98.0 0.0 . 92 CD101 9398 ucsc.edu;bcgsc.ca 37 1 117560028 117560028 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CD101 NM_001256109 exon5 c.G1545A p.E515E ATCTGAGAAGTCT . 42.0 4.0 68.0 0.0 . 94 CD109 135228 ucsc.edu;bcgsc.ca 37 6 74473386 74473386 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CD109 NM_133493 exon10 c.C1085T p.P362L TGAAGCCATCTCT . 48.0 4.0 103.0 0.0 . 155 CD163L1 283316 ucsc.edu;bcgsc.ca 37 12 7527298 7527298 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CD163L1 NM_174941 exon13 c.A3149G p.E1050G TAGATCTCTACTC . 30.0 4.0 43.0 0.0 . 100 CD38 952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 15839760 15839760 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CD38 NM_001775 exon5 c.T631C p.S211P AATGGATCCCGCA . 54.0 33.0 59.0 0.0 . 92 CD4 920 ucsc.edu;bcgsc.ca 37 12 6923451 6923451 + Silent SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CD4 NM_000616 exon4 c.T358C p.L120L GTGCAATTGCTAG . 43.0 4.0 70.0 0.0 . 90 CDK9 1025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 130550943 130550943 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CDK9 NM_001261 exon6 c.G725T p.S242I TCATCAGTCAGCT . 59.0 44.0 144.0 1.0 . 521 CDKN1A 1026 broad.mit.edu;bcgsc.ca 37 6 36651880 36651880 + Missense_Mutation SNP T T G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CDKN1A NM_001220778 exon2 c.T2G p.M1R GCGCCATGTCAGA . 50.0 47.0 57.0 1.0 . 872 CDKN1A 1026 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 36651881 36651881 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CDKN1A NM_001220778 exon2 c.G3T p.M1I CGCCATGTCAGAA . 50.0 45.0 56.0 0.0 . 872 CELF3 11189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 151679702 151679702 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CELF3 NM_007185 exon8 c.G841A p.G281S TGTAGCCGTTGAC . 125.0 17.0 103.0 0.0 . 91 CEP192 55125 ucsc.edu;bcgsc.ca 37 18 13049025 13049025 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CEP192 NM_032142 exon16 c.C2235T p.T745T TAAAACCAGAGAC . 58.0 5.0 81.0 0.0 . 27 CHL1 10752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 423911 423911 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CHL1 NM_001253388 exon15 c.G1926T p.R642S GAACAGGAGTGTT . 78.0 27.0 95.0 0.0 . 583 CHRM4 1132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 46406927 46406927 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . NM_000741 exon1 c.G1181A p.R394Q CGCTCCCGGGCCG . 89.0 23.0 73.0 0.0 . . CNDP2 55748 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 72185845 72185845 + Missense_Mutation SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CNDP2 NM_018235 exon10 c.T1180A p.Y394N CCTCATTACCTGG . 36.0 7.0 45.0 1.0 . 93 CNIH2 254263 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 11 66050758 66050758 + Nonsense_Mutation SNP T T G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CNIH2 NM_182553 exon5 c.T351G p.Y117X CATGTATGATGCG . 33.0 19.0 62.0 0.0 . 90 CNKSR3 154043 ucsc.edu;bcgsc.ca 37 6 154727645 154727645 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CNKSR3 NM_173515 exon13 c.G1511T p.R504M TAGCACCTGCTTC . 43.0 4.0 89.0 0.0 . 26 CNOT1 23019 ucsc.edu;bcgsc.ca 37 16 58568277 58568277 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CNOT1 NM_016284 exon40 c.A5669G p.K1890R TCGGTCTTCAGTA . 22.0 4.0 23.0 0.0 . 95 CNTNAP2 26047 ucsc.edu;bcgsc.ca 37 7 146818167 146818167 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CNTNAP2 NM_014141 exon6 c.A851G p.Q284R AGCGCCAGGGGCG . 35.0 4.0 55.0 0.0 . 100 COL15A1 1306 ucsc.edu;bcgsc.ca 37 9 101782702 101782702 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . COL15A1 NM_001855 exon12 c.A1679G p.Q560R AAGGACAGGCTGG . 38.0 5.0 77.0 0.0 . 96 COL4A2 1284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 111082761 111082761 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . COL4A2 NM_001846 exon9 c.A563G p.E188G CTGGAGAGCCTGG . 76.0 27.0 114.0 0.0 . 95 COL5A2 1290 ucsc.edu;bcgsc.ca 37 2 189927993 189927993 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . COL5A2 NM_000393 exon27 c.G1774T p.A592S CTGGCGCACCCTA . 23.0 4.0 28.0 0.0 . 92 COL6A6 131873 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 130289820 130289820 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . COL6A6 NM_001102608 exon6 c.G2560A p.A854T AAGTATGCTGATG . 88.0 16.0 93.0 0.0 . 76 CPN1 1369 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 101802222 101802222 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CPN1 NM_001308 exon9 c.G1339A p.E447K CCATTTCTTTCTT . 83.0 35.0 80.0 0.0 . 227 CR2 1380 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 207641906 207641906 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CR2 NM_001006658 exon3 c.C480T p.I160I TATGATCCACAAT . 293.0 160.0 239.0 0.0 . 232 CREBBP 1387 ucsc.edu;bcgsc.ca 37 16 3801728 3801728 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CREBBP NM_004380 exon20 c.A3778G p.T1260A CTTACGTCTGGGG . 38.0 4.0 53.0 0.0 . 1807 CRIP3 401262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 43274043 43274043 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CRIP3 NM_206922 exon6 c.G409A p.V137M ACATCACCTTCTC . 53.0 50.0 43.0 0.0 . 91 CRTC3 64784 ucsc.edu;bcgsc.ca 37 15 91185335 91185335 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CRTC3 NM_022769 exon15 c.C1823A p.P608H TGGACCCCTCTGT . 31.0 4.0 61.0 2.0 . 393 CSMD1 64478 ucsc.edu;bcgsc.ca 37 8 2999990 2999990 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CSMD1 NM_033225 exon41 c.C6238A p.Q2080K TACCTTGGTAAGC . 37.0 5.0 100.0 0.0 . 86 CTDSP2 10106 ucsc.edu;bcgsc.ca 37 12 58221372 58221372 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CTDSP2 NM_005730 exon3 c.C215T p.S72L AGATCCGACTGAG . 42.0 4.0 51.0 0.0 . 514 CTNNB1 1499 broad.mit.edu;bcgsc.ca 37 3 41266097 41266097 + Missense_Mutation SNP G G A rs28931588 bycluster TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 CTNNB1,gallbladder,other,0 CTNNB1 NM_001098209 exon3 c.G94A p.D32N TACCTGGACTCTG . 155.0 8.0 144.0 0.0 G|1.000;T|0.000 24361 CTTNBP2 83992 ucsc.edu;bcgsc.ca 37 7 117451007 117451007 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CTTNBP2 NM_033427 exon3 c.G226A p.G76R ATCTCCCATACCG . 45.0 4.0 53.0 0.0 . 94 CXorf58 254158 ucsc.edu;bcgsc.ca 37 X 23953505 23953505 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CXorf58 NM_152761 exon7 c.A748G p.I250V CAAGAGATCCATA . 37.0 4.0 32.0 0.0 . 130 CYP11B1 1584 ucsc.edu;bcgsc.ca 37 8 143958298 143958298 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CYP11B1 NM_000497 exon4 c.G599A p.S200N AAGTTGCTGGCTG . 44.0 4.0 45.0 0.0 . 94 DCTN3 11258 ucsc.edu;bcgsc.ca 37 9 34614117 34614117 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DCTN3 NM_024348 exon6 c.C490T p.L164L AGTGTAGCACAGA . 31.0 4.0 34.0 0.0 . 90 DCTN6 10671 ucsc.edu;bcgsc.ca 37 8 30038060 30038060 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DCTN6 NM_006571 exon6 c.A388G p.N130D TGTTGCAACCTAA . 46.0 4.0 132.0 1.0 . 91 DHX34 9704 ucsc.edu;bcgsc.ca 37 19 47856347 47856347 + Missense_Mutation SNP C C A rs184418357 alternate_allele TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DHX34 NM_014681 exon2 c.C60A p.S20R TCCCAGCGAGGAA . 36.0 4.0 45.0 0.0 C|0.999;T|0.000 231 DHX9 1660 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 182852382 182852382 + Missense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DHX9 NM_001357 exon25 c.A3023T p.E1008V ATAAGGAAAAGAG . 156.0 83.0 129.0 0.0 . 92 DMXL1 1657 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 118485268 118485268 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DMXL1 NM_005509 exon18 c.C3746T p.P1249L AAGAACCTGTTAT . 56.0 35.0 56.0 0.0 . 92 DNAH10 196385 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 124257438 124257438 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DNAH10 NM_207437 exon4 c.C271T p.P91S CCTCTTCCCGAGG . 59.0 32.0 53.0 0.0 . 95 DNAH10 196385 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 124257449 124257449 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DNAH10 NM_207437 exon4 c.C282T p.F94F GGAGTTCCTGGAC . 58.0 33.0 58.0 0.0 . 95 DNAH6 1768 broad.mit.edu;bcgsc.ca 37 2 84896485 84896485 + Missense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DNAH6 NM_001370 exon38 c.A6157T p.I2053F GAACGAATCATAC . 106.0 5.0 141.0 0.0 . 69 DNAH6 1768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 84852030 84852030 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DNAH6 NM_001370 exon29 c.G4358T p.R1453L AGGATCGCTGCTA . 86.0 34.0 129.0 0.0 . 69 DNAH9 1770 ucsc.edu;bcgsc.ca 37 17 11806049 11806049 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DNAH9 NM_001372 exon60 c.T11420C p.M3807T CATCAATGGAAGA . 36.0 4.0 47.0 0.0 . 168 DNAJC18 202052 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 138764241 138764241 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DNAJC18 NM_152686 exon3 c.C359A p.T120K GCATCTGTTGCTC . 81.0 26.0 60.0 0.0 . 227 DSEL 92126 ucsc.edu;bcgsc.ca 37 18 65181701 65181701 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DSEL NM_032160 exon2 c.G175T p.D59Y TGAAATCTTGCAC . 38.0 5.0 54.0 0.0 . 157 DSG4 147409 ucsc.edu;bcgsc.ca 37 18 28991246 28991246 + Silent SNP G G A rs143025218 TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DSG4 NM_001134453 exon14 c.G2247A p.S749S TGTATCGGGAGTG . 50.0 5.0 54.0 0.0 A|0.000;C|0.000;G|1.000 177 DYNC1H1 1778 ucsc.edu;bcgsc.ca 37 14 102469021 102469021 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DYNC1H1 NM_001376 exon22 c.G4690A p.E1564K CCAGTGGAAACCC . 43.0 4.0 111.0 0.0 . 98 DYSF 8291 ucsc.edu;bcgsc.ca;mdanderson.org 37 2 71778194 71778194 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DYSF NM_001130982 exon19 c.C1642A p.P548T TTCCTCCCCACTT . 79.0 24.0 92.0 2.0 . 158 EDC4 23644 ucsc.edu;bcgsc.ca 37 16 67911468 67911468 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . EDC4 NM_014329 exon6 c.G698T p.R233L ACTTTCGCAGGAT . 45.0 4.0 34.0 0.0 . 92 EFCAB4B 84766 ucsc.edu;bcgsc.ca 37 12 3782653 3782653 + Silent SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . EFCAB4B NM_001144958 exon7 c.A630G p.E210E ATGGGCTTCTTGG . 40.0 4.0 55.0 0.0 . 92 EIF4G3 8672 ucsc.edu;bcgsc.ca 37 1 21133841 21133841 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . EIF4G3 NM_001198801 exon35 c.G4837A p.E1613K CTGCTTCCCGCAG . 46.0 4.0 72.0 0.0 . 91 ELL2 22936 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 95226823 95226823 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ELL2 NM_012081 exon10 c.G1745T p.G582V TTTGAGCCTGGAG . 145.0 86.0 119.0 0.0 . 90 EPHA1 2041 ucsc.edu;bcgsc.ca 37 7 143096773 143096773 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . EPHA1 NM_005232 exon4 c.A806G p.E269G CCTTCCTCATAGC . 43.0 4.0 43.0 1.0 . 1436 ESRP2 80004 ucsc.edu;bcgsc.ca 37 16 68265213 68265213 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ESRP2 NM_024939 exon12 c.C1579A p.R527S GGCAACGCTGAGC . 49.0 4.0 83.0 0.0 . 91 EXOC2 55770 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 592543 592543 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . EXOC2 NM_018303 exon11 c.G1118A p.C373Y CCAATGCATTGCC . 95.0 14.0 56.0 0.0 . 662 EZR 7430 ucsc.edu;bcgsc.ca 37 6 159197498 159197498 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . EZR NM_003379 exon7 c.G737A p.R246K ATGTTCCTGATTT . 43.0 4.0 68.0 0.0 . 70 FAF1 11124 ucsc.edu;bcgsc.ca 37 1 50941323 50941323 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FAF1 NM_007051 exon18 c.T1682C p.L561P GGAGGCAGGGCTT . 34.0 4.0 36.0 0.0 . 652 FAM120C 54954 ucsc.edu;bcgsc.ca 37 X 54160309 54160309 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FAM120C NM_017848 exon8 c.C1787A p.T596N GGAATGGTGATAT . 47.0 4.0 32.0 0.0 . 131 FAM179A 165186 ucsc.edu;bcgsc.ca 37 2 29259442 29259442 + Silent SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FAM179A NM_199280 exon18 c.C2454A p.S818S GGATTCCAACAAG . 56.0 5.0 74.0 0.0 . 26 FAM179B 23116 ucsc.edu;bcgsc.ca 37 14 45432959 45432959 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FAM179B NM_015091 exon1 c.G1335A p.A445A GCTGGCGGACAAC . 26.0 4.0 51.0 1.0 . 93 FAM189A2 9413 ucsc.edu;bcgsc.ca 37 9 71992542 71992542 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FAM189A2 NM_004816 exon6 c.T376C p.S126P CAGATTTCTGCTG . 36.0 4.0 58.0 1.0 . 90 FAM221B 392307 ucsc.edu;bcgsc.ca 37 9 35826000 35826000 + Silent SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . NM_001012446 exon2 c.C159A p.T53T TTCAGAGGTATGG . 33.0 4.0 59.0 0.0 . . FAM49B 51571 ucsc.edu;bcgsc.ca 37 8 130874579 130874579 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FAM49B NM_016623 exon5 c.C197T p.A66V TGGATTGCCTTCA . 53.0 4.0 43.0 0.0 . 90 FAM71E1 112703 ucsc.edu;bcgsc.ca 37 19 50979111 50979111 + Silent SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FAM71E1 NM_138411 exon2 c.C339A p.I113I CTCAAAGATGGGG . 41.0 4.0 44.0 0.0 . 44 FBN1 2200 ucsc.edu;bcgsc.ca 37 15 48766571 48766571 + Missense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FBN1 NM_000138 exon34 c.T4091A p.L1364Q TCGTCCAGATCTT . 40.0 4.0 40.0 0.0 . 92 FBN2 2201 ucsc.edu;bcgsc.ca 37 5 127730952 127730952 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FBN2 NM_001999 exon9 c.T1094C p.M365T AAACACATGCCTG . 38.0 5.0 30.0 0.0 . 146 FCF1 51077 ucsc.edu;bcgsc.ca 37 14 75200777 75200777 + Splice_Site SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FCF1 NM_015962 exon7 c.454-2A>G . TCTTACAGCATAA . 50.0 4.0 71.0 0.0 . 91 FER1L5 90342 ucsc.edu;bcgsc.ca 37 2 97338889 97338889 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FER1L5 NM_001113382 exon18 c.C1552A p.L518M AAAGAGCTGATCC . 51.0 7.0 56.0 0.0 . 23 FIGNL1 63979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 50514900 50514900 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FIGNL1 NM_001042762 exon4 c.C86T p.P29L GCCTTCGGTCCGG . 70.0 20.0 82.0 0.0 . 93 FN1 2335 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 216238044 216238044 + Splice_Site SNP C C G rs111852829 bycluster TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FN1 NM_212482 exon40 c.6247+1G>C . CTCTTACCTGTCT . 238.0 36.0 253.0 1.0 G|1.000 584 FREM2 341640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 13 39265055 39265055 + Nonsense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FREM2 NM_207361 exon1 c.G3574T p.E1192X CAGCCAGAGATGT . 55.0 44.0 136.0 0.0 . 100 FSTL4 23105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 132585166 132585166 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FSTL4 NM_015082 exon7 c.G830A p.R277K GGTGGCCTCAGGT . 91.0 13.0 74.0 0.0 . 91 FUS 2521 broad.mit.edu;bcgsc.ca 37 16 31193931 31193931 + Missense_Mutation SNP G G C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FUS NM_001170634 exon3 c.G136C p.D46H TCCACGGACACTT . 98.0 6.0 95.0 0.0 . 1719 FZD9 8326 ucsc.edu;bcgsc.ca 37 7 72849142 72849142 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FZD9 NM_003508 exon1 c.T805C p.F269L ATCATCTTCCTCT . 42.0 5.0 48.0 0.0 . 1082 GDF5 8200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 34022378 34022378 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . GDF5 NM_000557 exon2 c.G835A p.D279N GCACATCCAGCAA . 51.0 12.0 50.0 0.0 . 226 GGT7 2686 ucsc.edu;bcgsc.ca 37 20 33447305 33447305 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . GGT7 NM_178026 exon7 c.A955G p.T319A CGGAGGTGCCAAG . 37.0 4.0 38.0 1.0 . 91 GPR115 221393 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 47681793 47681793 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . GPR115 NM_153838 exon6 c.G812A p.G271E TCTTAGGAATGGT . 93.0 24.0 61.0 0.0 . 160 GPR124 25960 ucsc.edu;bcgsc.ca 37 8 37687398 37687398 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . GPR124 NM_032777 exon6 c.A584G p.D195G CCTGTGACTGCCA . 21.0 4.0 58.0 0.0 . 157 GPR63 81491 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 97246970 97246970 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . GPR63 NM_030784 exon2 c.T638C p.L213S ACGGCTAAAGGAA . 25.0 15.0 58.0 0.0 . 92 GRID2IP 392862 broad.mit.edu;ucsc.edu;mdanderson.org 37 7 6554130 6554130 + Nonsense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . NM_001145118 exon8 c.C1299A p.Y433X CACAGGGTAGACG . 15.0 8.0 14.0 0.0 . . GRM2 2912 broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 51749875 51749875 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . GRM2 NM_000839 exon4 c.G2086A p.A696T GTGGTCGCCTGGC . 20.0 4.0 42.0 0.0 . 522 GRSF1 2926 ucsc.edu;bcgsc.ca 37 4 71698873 71698873 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . NM_002092 exon3 c.A632G p.E211G TGCTTCTCTAAGG . 35.0 4.0 77.0 0.0 . . GRXCR1 389207 broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 42895631 42895631 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . GRXCR1 NM_001080476 exon1 c.C348T p.G116G TGCTGGCCAGGCT . 20.0 7.0 50.0 1.0 . 23 GTF3C1 2975 ucsc.edu;bcgsc.ca 37 16 27474886 27474886 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . GTF3C1 NM_001520 exon35 c.A5900G p.N1967S GAGATGTTGGCAG . 36.0 4.0 36.0 0.0 . 94 GUCY1B3 2983 ucsc.edu;bcgsc.ca 37 4 156715007 156715007 + Splice_Site SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . NM_000857 exon6 c.496-1G>T . TATCCAGGTTATT . 44.0 4.0 97.0 1.0 . . HECW1 23072 ucsc.edu;bcgsc.ca 37 7 43506065 43506065 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . HECW1 NM_015052 exon15 c.A2811G p.S937S AGGGTCACTTTCT . 56.0 4.0 53.0 1.0 . 669 HTR1B 3351 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 78172410 78172410 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . HTR1B NM_000863 exon1 c.C711T p.S237S AATCCGGGAGCGG . 23.0 19.0 37.0 0.0 . 90 HUNK 30811 ucsc.edu;bcgsc.ca 37 21 33340670 33340670 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . HUNK NM_014586 exon6 c.T983C p.V328A GCAAAGTGCCCTG . 23.0 4.0 56.0 0.0 . 334 IGSF10 285313 ucsc.edu;bcgsc.ca 37 3 151155692 151155692 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . IGSF10 NM_178822 exon6 c.T6657C p.S2219S ATCCCCACTGGGA . 39.0 4.0 49.0 0.0 . 102 IGSF11 152404 broad.mit.edu;bcgsc.ca 37 3 118621409 118621409 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . IGSF11 NM_001015887 exon7 c.T1254C p.P418P CATGACAGGTACT . 94.0 8.0 105.0 0.0 . 90 IKZF4 64375 ucsc.edu;bcgsc.ca 37 12 56428968 56428968 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . IKZF4 NM_022465 exon8 c.C1611T p.I537I CCGTATCCTCTTC . 41.0 4.0 37.0 0.0 . 205 IL12B 3593 ucsc.edu;bcgsc.ca 37 5 158750288 158750288 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . IL12B NM_002187 exon3 c.G138A p.V46V GAGGACCACCATT . 44.0 5.0 53.0 1.0 . 90 IL33 90865 ucsc.edu;bcgsc.ca 37 9 6251188 6251188 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . IL33 NM_001199640 exon4 c.C266T p.S89F AGCAGTCTACTGT . 39.0 4.0 54.0 0.0 . 90 IMPDH1 3614 ucsc.edu;bcgsc.ca 37 7 128038520 128038520 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . IMPDH1 NM_000883 exon10 c.A1022G p.D341G TATTTGTCATCCT . 42.0 4.0 63.0 0.0 . 230 INF2 64423 ucsc.edu;bcgsc.ca 37 14 105175662 105175662 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . INF2 NM_022489 exon11 c.C1994T p.T665I ATACCACCAAGTT . 26.0 4.0 37.0 0.0 . 492 INF2 64423 ucsc.edu;bcgsc.ca 37 14 105178003 105178003 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . INF2 NM_022489 exon16 c.C2456T p.P819L AGCTGCCCCGGGA . 41.0 4.0 80.0 0.0 . 492 INPP4B 8821 ucsc.edu;bcgsc.ca 37 4 143043367 143043367 + Silent SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . INPP4B NM_003866 exon22 c.C2049A p.A683A GCCAACGGCCATG . 48.0 5.0 54.0 0.0 . 228 INSIG1 3638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 155094019 155094019 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . INSIG1 NM_005542 exon4 c.G596A p.G199D CTTTGGGCCTTTG . 209.0 41.0 246.0 0.0 . 90 IQGAP1 8826 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 91020941 91020941 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . IQGAP1 NM_003870 exon26 c.C3149T p.T1050M ATCCTACGGTTAT . 67.0 15.0 63.0 0.0 . 950 ISL1 3670 ucsc.edu;bcgsc.ca 37 5 50685754 50685754 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ISL1 NM_002202 exon4 c.C753T p.P251P GCAGCCCAATGAC . 42.0 4.0 34.0 0.0 . 515 KBTBD3 143879 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 105925003 105925003 + Missense_Mutation SNP G G C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KBTBD3 NM_152433 exon3 c.C413G p.S138C GCTTTGGATAGGA . 72.0 26.0 138.0 0.0 . 91 KCNB2 9312 ucsc.edu;bcgsc.ca 37 8 73849698 73849698 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KCNB2 NM_004770 exon3 c.C2108A p.S703Y AGAGCTCTCTAAA . 49.0 4.0 40.0 0.0 . 158 KCNK10 54207 ucsc.edu;bcgsc.ca 37 14 88654418 88654418 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KCNK10 NM_138318 exon6 c.A904G p.K302E GGGGCTTATACCA . 40.0 4.0 58.0 0.0 . 95 KCNT1 57582 ucsc.edu;bcgsc.ca 37 9 138661869 138661869 + Silent SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KCNT1 NM_020822 exon16 c.C1587A p.L529L CACCCTCATCACC . 35.0 4.0 72.0 0.0 . 137 KCNU1 157855 ucsc.edu;bcgsc.ca 37 8 36788605 36788605 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KCNU1 NM_001031836 exon25 c.G2873T p.R958I CTGGAAGAAACCG . 32.0 5.0 94.0 0.0 . 23 KDM2A 22992 ucsc.edu;bcgsc.ca 37 11 66999328 66999328 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KDM2A NM_012308 exon12 c.A1376G p.E459G AGCTTGAAGGCCT . 17.0 4.0 42.0 0.0 . 661 KDM4A 9682 ucsc.edu;bcgsc.ca 37 1 44132198 44132198 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KDM4A NM_014663 exon7 c.T749C p.L250P TAATGCTGAAGAA . 30.0 4.0 49.0 0.0 . 227 KIAA1432 57589 ucsc.edu;bcgsc.ca 37 9 5774022 5774022 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KIAA1432 NM_020829 exon26 c.G4048A p.E1350K ATAACAGAAGAGC . 48.0 5.0 111.0 0.0 . 90 KIF13B 23303 ucsc.edu;bcgsc.ca 37 8 28988090 28988090 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KIF13B NM_015254 exon24 c.C3035T p.A1012V TCCTTTGCAGAAA . 35.0 4.0 90.0 0.0 . 22 KIF22 3835 ucsc.edu;bcgsc.ca 37 16 29816207 29816207 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KIF22 NM_007317 exon12 c.C1750A p.L584I CCGGAGCTACTGG . 33.0 4.0 26.0 0.0 . 68 KIF3B 9371 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 30897746 30897746 + Frame_Shift_Del DEL A A - novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KIF3B NM_004798 exon2 c.166delA p.T56fs CCCAAGACCTTCA . 68.0 19.0 97.0 0.0 . 517 KLK4 9622 ucsc.edu;bcgsc.ca 37 19 51411692 51411692 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KLK4 NM_004917 exon4 c.A535G p.S179G GCTTACTGCAGAC . 43.0 5.0 38.0 0.0 . 226 KRT35 3886 ucsc.edu;bcgsc.ca 37 17 39636914 39636914 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KRT35 NM_002280 exon1 c.T436C p.S146P AGTAGGACTGGTA . 28.0 4.0 40.0 0.0 . 92 KSR1 8844 ucsc.edu;bcgsc.ca 37 17 25944438 25944438 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KSR1 NM_014238 exon20 c.T2266C p.F756L GGACACTTCTGGA . 24.0 4.0 22.0 0.0 . 964 L3MBTL1 26013 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 42143656 42143656 + Frame_Shift_Del DEL C C - novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . L3MBTL1 NM_032107 exon5 c.444delC p.H148fs GGACCACCCCCAG . 65.0 22.0 42.0 0.0 . 227 LAMA1 284217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 6975955 6975955 + Missense_Mutation SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . LAMA1 NM_005559 exon45 c.A6470T p.Y2157F CCGAGGTAGAAGA . 89.0 24.0 109.0 0.0 . 149 LAMA5 3911 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 60886538 60886538 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . LAMA5 NM_005560 exon72 c.T9861C p.N3287N GCTCACATTGACG . 65.0 23.0 72.0 0.0 . 93 LCP1 3936 ucsc.edu;bcgsc.ca 37 13 46725197 46725197 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . LCP1 NM_002298 exon8 c.G756T p.L252F TTCTCTCAAAAGA . 31.0 4.0 39.0 0.0 . 685 LEPRE1 64175 ucsc.edu;bcgsc.ca 37 1 43224989 43224989 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . LEPRE1 NM_001146289 exon3 c.G691T p.A231S GCAGCGCCGCCTC . 50.0 5.0 69.0 0.0 . 94 LINGO2 158038 broad.mit.edu;bcgsc.ca 37 9 27950383 27950383 + Missense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . LINGO2 NM_001258282 exon7 c.T287A p.V96E GGTTCCACATTGG . 92.0 10.0 176.0 1.0 . 516 LUZP4 51213 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 114541215 114541215 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . LUZP4 NM_016383 exon4 c.A788G p.Q263R CCACTCAGAGAGA . 104.0 64.0 97.0 1.0 . 132 MADD 8567 ucsc.edu;bcgsc.ca 37 11 47308084 47308084 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MADD NM_130470 exon15 c.A2652G p.K884K TCTGAAAGGTAAC . 34.0 4.0 40.0 0.0 . 682 MAGEB3 4114 ucsc.edu;bcgsc.ca 37 X 30254253 30254253 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MAGEB3 NM_002365 exon5 c.C212A p.T71N TATCCACCACTAC . 45.0 4.0 46.0 0.0 . 130 MALT1 10892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 56415027 56415027 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MALT1 NM_006785 exon17 c.G2428A p.E810K ACTGATGAAATAC . 81.0 35.0 100.0 0.0 . 660 MAOA 4128 ucsc.edu;bcgsc.ca 37 X 43571197 43571197 + Missense_Mutation SNP A A G rs1800464 byfrequency;alternate_allele TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MAOA NM_000240 exon4 c.A385G p.R129G CTGTGGAGGACAA . 37.0 4.0 53.0 0.0 A|0.740;0|0.061 194 MAP1A 4130 ucsc.edu;bcgsc.ca 37 15 43821659 43821659 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MAP1A NM_002373 exon4 c.A7988G p.H2663R ATGGACACAGCCC . 29.0 4.0 41.0 0.0 . 141 MBD1 4152 ucsc.edu;bcgsc.ca 37 18 47800080 47800080 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MBD1 NM_001204137 exon13 c.C1375A p.H459N GGGTATGGTCTGG . 46.0 4.0 76.0 0.0 . 228 MBD4 8930 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 129155490 129155490 + Missense_Mutation SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MBD4 NM_003925 exon3 c.A997T p.I333L TGTTTATGATGCC . 143.0 23.0 180.0 0.0 . 228 MCM7 4176 broad.mit.edu;mdanderson.org 37 7 99697309 99697309 + Missense_Mutation SNP G G C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MCM7 NM_005916 exon3 c.C179G p.P60R AACTCGGGGTCAT . 14.0 8.0 13.0 0.0 . 651 MED12L 116931 ucsc.edu;bcgsc.ca 37 3 150873994 150873994 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MED12L NM_053002 exon5 c.G603T p.K201N GGCCAAGATTTCT . 33.0 4.0 41.0 1.0 . 576 METTL12 751071 ucsc.edu;bcgsc.ca 37 11 62434009 62434009 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . METTL12 NM_001043229 exon3 c.A209G p.E70G TGCAGGAGGCACA . 31.0 4.0 44.0 1.0 . 22 MFN1 55669 broad.mit.edu;bcgsc.ca 37 3 179069781 179069781 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MFN1 NM_033540 exon3 c.A206G p.E69G TTGGTGAGGTGCT . 206.0 11.0 230.0 1.0 . 155 MIR629 693214 ucsc.edu;mdanderson.org 37 15 70371772 70371772 + RNA SNP C C A rs111899904 byfrequency;by1000genomes;alternate_allele TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . . . . . AGTTCTCCCAACG . 27.0 9.0 28.0 0.0 C|0.993;T|0.007 . MLC1 23209 ucsc.edu;bcgsc.ca 37 22 50512719 50512719 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MLC1 NM_015166 exon8 c.A640G p.I214V CAATGATCCCCCC . 37.0 4.0 39.0 0.0 . 91 MLNR 2862 ucsc.edu;bcgsc.ca 37 13 49796480 49796480 + Silent SNP C C A rs201685217 alternate_allele TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MLNR NM_001507 exon2 c.C1206A p.T402T CTACACCGAGACA . 30.0 4.0 56.0 0.0 . 90 MPP4 58538 ucsc.edu;bcgsc.ca 37 2 202552052 202552052 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MPP4 NM_033066 exon5 c.C322A p.Q108K GCTCTTGGATCTC . 49.0 4.0 67.0 0.0 . 22 MUC6 4588 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 1026952 1026952 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MUC6 NM_005961 exon19 c.G2383A p.G795S CAACACCGGTGGC . 84.0 30.0 60.0 0.0 . 23 MYLK4 340156 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 2685624 2685624 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MYLK4 NM_001012418 exon6 c.G451A p.E151K TGATCTCGTTCTT . 92.0 25.0 75.0 0.0 . 150 MYO1E 4643 ucsc.edu;bcgsc.ca 37 15 59470655 59470655 + Silent SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MYO1E NM_004998 exon19 c.C1986A p.V662V CATGTTGACCGAC . 46.0 6.0 57.0 0.0 . 514 NAV2 89797 ucsc.edu;bcgsc.ca 37 11 20127077 20127077 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NAV2 NM_001244963 exon37 c.A6822G p.R2274R CTCCAGATGGGTG . 67.0 6.0 61.0 0.0 . 96 NBEA 26960 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 13 36229035 36229036 + Frame_Shift_Ins INS - - C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NBEA NM_015678 exon53 c.8016_8017insC p.V2672fs CCTCGTTGACCAG . 45.0 30.0 73.0 0.0 . 144 NCDN 23154 ucsc.edu;bcgsc.ca 37 1 36026742 36026742 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NCDN NM_001014839 exon4 c.A990G p.K330K GGTGAAAGAGGAT . 40.0 4.0 52.0 1.0 . 155 NFATC4 4776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 24844908 24844908 + Missense_Mutation SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NFATC4 NM_001198967 exon8 c.T2105A p.L702Q ACCGACTGCAGAG . 53.0 17.0 96.0 0.0 . 92 NFIB 4781 ucsc.edu;bcgsc.ca 37 9 14179728 14179728 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NFIB NM_001190738 exon3 c.C692A p.P231Q TTACCTGGAGGAT . 31.0 4.0 57.0 1.0 . 226 NFYC 4802 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 41215259 41215259 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NFYC NM_001142587 exon4 c.A192G p.E64E TGCAGAAGCGCCT . 56.0 13.0 84.0 1.0 . 289 NLGN1 22871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 173322666 173322666 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NLGN1 NM_014932 exon3 c.G278T p.R93L GGGAACGTCGTTT . 94.0 39.0 102.0 0.0 . 231 NLGN1 22871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 173525610 173525610 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NLGN1 NM_014932 exon4 c.C634A p.L212I TATCGACTTGGAG . 97.0 52.0 137.0 0.0 . 231 NLRP13 126204 ucsc.edu;bcgsc.ca 37 19 56423971 56423971 + Silent SNP T T C rs149489544 alternate_allele TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 NLRP13,NS,carcinoma,0 NLRP13 NM_176810 exon5 c.A1212G p.E404E CTCAACTTCACTT . 60.0 6.0 41.0 0.0 T|1.000;G|0.000 211 NONO 4841 ucsc.edu;bcgsc.ca 37 X 70514267 70514267 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NONO NM_001145408 exon6 c.T539C p.I180T TAGTCATTGTGGA . 41.0 4.0 53.0 0.0 . 231 NPC1L1 29881 ucsc.edu;bcgsc.ca 37 7 44555743 44555743 + Silent SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NPC1L1 NM_013389 exon18 c.C3654A p.I1218I GGTGCTGATGGCA . 76.0 6.0 63.0 0.0 . 94 NRIP2 83714 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 2944113 2944113 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NRIP2 NM_031474 exon1 c.C37T p.P13S AGGAGGGTCTCCA . 64.0 14.0 88.0 0.0 . 187 NUP188 23511 ucsc.edu;bcgsc.ca 37 9 131765129 131765129 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NUP188 NM_015354 exon37 c.C4171T p.P1391S GATGCCCCCTCTT . 35.0 4.0 45.0 0.0 . 207 NUP214 8021 ucsc.edu;bcgsc.ca 37 9 134004676 134004676 + Missense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NUP214 NM_005085 exon4 c.A404T p.Q135L AACAGCAAAAACG . 39.0 4.0 86.0 0.0 . 1131 NUP88 4927 ucsc.edu;bcgsc.ca 37 17 5292266 5292266 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NUP88 NM_002532 exon11 c.C1499A p.P500Q GACGCTGGATGGA . 39.0 4.0 58.0 1.0 . 204 OR2AE1 81392 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 99474046 99474046 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . OR2AE1 NM_001005276 exon1 c.T611C p.I204T AGGAGAATGCTGC . 51.0 15.0 59.0 0.0 . 90 OR8B8 26493 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 124310110 124310110 + Missense_Mutation SNP C C T rs147220624 alternate_allele TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . OR8B8 NM_012378 exon1 c.G872A p.S291N CTCAGGCTATAAA . 35.0 16.0 66.0 0.0 C|0.999;A|0.001 69 OR8B8 26493 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 124310343 124310343 + Silent SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . OR8B8 NM_012378 exon1 c.C639A p.T213T GAAGATGGTGACT . 40.0 18.0 86.0 0.0 . 69 OSBPL10 114884 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 31705616 31705616 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . OSBPL10 NM_017784 exon11 c.C2205T p.R735R GTTCTCGCGCTTC . 63.0 13.0 64.0 0.0 . 69 OSBPL10 114884 ucsc.edu;bcgsc.ca 37 3 31871717 31871717 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . OSBPL10 NM_017784 exon4 c.C544T p.P182S AGCTTGGAGCACT . 36.0 4.0 46.0 0.0 . 69 P4HA2 8974 ucsc.edu;bcgsc.ca 37 5 131552900 131552900 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . P4HA2 NM_001017974 exon4 c.C321A p.D107E AGCTGAGTCCTGC . 43.0 4.0 30.0 0.0 . 68 PADI1 29943 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 17563890 17563890 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PADI1 NM_013358 exon12 c.G1395A p.S465S CTACTCGGACTGG . 49.0 33.0 88.0 1.0 . 68 PADI3 51702 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 17609432 17609432 + Missense_Mutation SNP G G A rs35624745 bycluster;byfrequency TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PADI3 NM_016233 exon16 c.G1853A p.R618Q AGGTGCGGTCCCT . 36.0 14.0 55.0 0.0 G|0.967;A|0.033 132 PADI6 353238 ucsc.edu;bcgsc.ca 37 1 17727872 17727872 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PADI6 NM_207421 exon17 c.T2023C p.C675R GACATCTGTGCCT . 45.0 4.0 58.0 0.0 . 113 PAX8 7849 ucsc.edu;bcgsc.ca 37 2 114002034 114002034 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PAX8 NM_013952 exon4 c.A359G p.D120G ACAGTGTCATTGT . 30.0 4.0 24.0 0.0 . 684 PBX1 5087 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 164768969 164768969 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PBX1 NM_001204963 exon4 c.C544T p.L182F ATGAATCTCCTGC . 83.0 16.0 58.0 0.0 . 659 PCNXL2 80003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 233397906 233397906 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PCNXL2 NM_014801 exon3 c.A365G p.N122S TGCCTATTATTGC . 144.0 19.0 108.0 0.0 . 91 PDCL 5082 ucsc.edu;bcgsc.ca 37 9 125582879 125582879 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PDCL NM_005388 exon4 c.C391A p.Q131K CATCTTGGTCCTC . 28.0 4.0 33.0 0.0 . 90 PDE1A 5136 ucsc.edu;bcgsc.ca 37 2 183053724 183053724 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PDE1A NM_001258312 exon12 c.G1249A p.V417M GGGCCACCATGGT . 43.0 4.0 37.0 0.0 . 93 PDLIM3 27295 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 186425735 186425735 + Missense_Mutation SNP G G C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PDLIM3 NM_014476 exon7 c.C799G p.R267G CCGGACGGTCATC . 16.0 16.0 40.0 0.0 . 92 PHF3 23469 ucsc.edu;bcgsc.ca 37 6 64390032 64390032 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PHF3 NM_015153 exon2 c.C376A p.P126T AGATCTCCAAGAA . 41.0 4.0 72.0 1.0 . 229 PITPNM1 9600 ucsc.edu;bcgsc.ca 37 11 67262555 67262555 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PITPNM1 NM_004910 exon17 c.T2624C p.L875P TGGCGCAGGATGA . 23.0 4.0 38.0 0.0 . 227 PIWIL4 143689 ucsc.edu;bcgsc.ca 37 11 94331044 94331044 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PIWIL4 NM_152431 exon11 c.T1343C p.I448T GCCGGATTGTGCC . 45.0 4.0 60.0 0.0 . 91 PIWIL4 143689 ucsc.edu;bcgsc.ca 37 11 94351131 94351131 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PIWIL4 NM_152431 exon17 c.A2026G p.K676E CTCAACAAATGGT . 31.0 4.0 78.0 0.0 . 91 PKD1L2 114780 ucsc.edu;bcgsc.ca 37 16 81241133 81241133 + Missense_Mutation SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PKD1L2 NM_001076780 exon5 c.A868T p.T290S CTCCTGTACTAAT . 44.0 4.0 59.0 0.0 . 92 PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 51824795 51824795 + Missense_Mutation SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PKHD1 NM_170724 exon36 c.A5781T p.R1927S GGACCATCTCCGG . 122.0 13.0 60.0 0.0 . 603 PLA2G6 8398 ucsc.edu;bcgsc.ca 37 22 38508273 38508273 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PLA2G6 NM_003560 exon17 c.G2316A p.E772E ACTGACCTCATCC . 25.0 4.0 28.0 0.0 . 91 PLCB1 23236 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 8626827 8626827 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PLCB1 NM_015192 exon5 c.A463A p.S155S GAAAAAGCGTAAG . 121.0 16.0 137.0 0.0 . 297 PLD5 200150 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 242451667 242451667 + Nonsense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PLD5 NM_152666 exon4 c.T492A p.C164X TACCTGACATGCT . 561.0 61.0 424.0 0.0 . 96 PLXNA1 5361 ucsc.edu;bcgsc.ca 37 3 126737196 126737196 + Silent SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PLXNA1 NM_032242 exon19 c.G3720T p.L1240L CAGCCTGCTGACG . 53.0 4.0 63.0 0.0 . 93 PPARGC1B 133522 ucsc.edu;bcgsc.ca 37 5 149200062 149200062 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PPARGC1B NM_133263 exon2 c.G145A p.A49T CTGGATGCCAGCG . 25.0 4.0 27.0 0.0 . 186 PPP1R13B 23368 ucsc.edu;bcgsc.ca 37 14 104204199 104204199 + Splice_Site SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PPP1R13B NM_015316 exon16 c.2865-2A>G . GCGTCCTGGAATA . 16.0 4.0 36.0 0.0 . 227 PPP3CA 5530 ucsc.edu;bcgsc.ca 37 4 102030193 102030193 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PPP3CA NM_000944 exon3 c.T302C p.L101P TCAAAGAGCTTCA . 39.0 4.0 45.0 0.0 . 227 PRDM10 56980 ucsc.edu;bcgsc.ca 37 11 129793150 129793150 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PRDM10 NM_020228 exon14 c.A2039G p.Q680R TTAAATTGCTTCC . 35.0 4.0 39.0 0.0 . 91 PRL 5617 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 22294684 22294684 + Missense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PRL NM_000948 exon2 c.T158A p.L53Q TGGGACAGGACGA . 270.0 56.0 142.0 0.0 . 90 PROM1 8842 ucsc.edu;bcgsc.ca 37 4 16002203 16002203 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PROM1 NM_006017 exon13 c.G1494T p.M498I AATGATCATCAAT . 44.0 4.0 55.0 0.0 . 207 PRR16 51334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 120022233 120022233 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PRR16 NM_016644 exon3 c.C675T p.G225G CCAAGGCCCTCCC . 118.0 28.0 100.0 0.0 . 71 PTPN14 5784 broad.mit.edu;bcgsc.ca 37 1 214531354 214531354 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PTPN14 NM_005401 exon19 c.C3475A p.Q1159K TCCTCTGCTCCCT . 144.0 7.0 103.0 0.0 . 290 PTPN6 5777 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 7064833 7064833 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PTPN6 NM_080548 exon7 c.A764G p.K255R TGCAGAAGCAGGA . 55.0 7.0 59.0 0.0 . 703 RAB31 11031 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 9859227 9859227 + Missense_Mutation SNP C C A rs147665641 alternate_allele TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RAB31 NM_006868 exon7 c.C493A p.R165S GCAGGCCGCCAGA . 41.0 12.0 68.0 0.0 C|0.999;T|0.001 205 RADIL 55698 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 4874647 4874647 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RADIL NM_018059 exon4 c.C1007T p.T336I ACCACGGTCCTGT . 35.0 20.0 41.0 0.0 . 994 RBM47 54502 ucsc.edu;bcgsc.ca 37 4 40440519 40440519 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RBM47 NM_001098634 exon4 c.T392C p.L131P TTGTTGAGCTCAC . 44.0 5.0 59.0 0.0 . 25 RCBTB2 1102 ucsc.edu;bcgsc.ca 37 13 49073784 49073784 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RCBTB2 NM_001268 exon13 c.A1357G p.I453V GGCTGATGCTGTC . 38.0 4.0 82.0 0.0 . 418 REG1B 5968 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 79314699 79314699 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . REG1B NM_006507 exon2 c.C40A p.L14M ACATCAGGGAGGA . 106.0 30.0 148.0 0.0 . 91 RELT 84957 ucsc.edu;bcgsc.ca 37 11 73103403 73103403 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RELT NM_152222 exon6 c.T515C p.F172S CTGTCTTCTGCCT . 45.0 4.0 66.0 0.0 . 228 REPS2 9185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 17095520 17095520 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . REPS2 NM_004726 exon13 c.C1506T p.P502P CCAGCCCAGTGTG . 33.0 15.0 26.0 0.0 . 131 RFX3 5991 broad.mit.edu;ucsc.edu;mdanderson.org 37 9 3346710 3346710 + Nonsense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RFX3 NM_134428 exon4 c.C172T p.Q58X CATACTGCACCTG . 44.0 10.0 70.0 0.0 . 93 RHCG 51458 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 15 90023512 90023512 + Nonsense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RHCG NM_016321 exon4 c.C650A p.S217X AGGTCCGACTGGT . 44.0 19.0 44.0 0.0 . 226 RHCG 51458 ucsc.edu;bcgsc.ca 37 15 90039658 90039658 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RHCG NM_016321 exon1 c.T118C p.W40R ACCACCAGTGGGC . 31.0 4.0 32.0 0.0 . 226 RHOBTB2 23221 ucsc.edu;bcgsc.ca 37 8 22874843 22874843 + Missense_Mutation SNP G G A rs143264894 TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RHOBTB2 NM_001160036 exon12 c.G2111A p.R704Q GGGCACGGAAGGA . 33.0 4.0 66.0 0.0 G|1.000;A|0.000 416 RIMS2 9699 ucsc.edu;bcgsc.ca 37 8 105001616 105001616 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RIMS2 NM_001100117 exon17 c.T3011C p.V1004A ATCGTGTCATGGA . 34.0 4.0 29.0 0.0 . 279 RNF123 63891 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49753579 49753579 + Silent SNP G G C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RNF123 NM_022064 exon34 c.G3384C p.L1128L GAACCTGTTTGAT . 47.0 8.0 28.0 0.0 . 584 RNF168 165918 ucsc.edu;bcgsc.ca 37 3 196229935 196229935 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RNF168 NM_152617 exon1 c.A110G p.K37R CACGGTTTACACA . 43.0 5.0 78.0 0.0 . 90 RWDD1 51389 ucsc.edu;bcgsc.ca 37 6 116901493 116901493 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RWDD1 NM_015952 exon2 c.G109A p.V37M ATTACTGTGACGT . 31.0 4.0 65.0 0.0 . 92 RXFP1 59350 ucsc.edu;bcgsc.ca 37 4 159572966 159572966 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RXFP1 NM_001253727 exon18 c.C2114A p.P705Q TGAACCCAATTCT . 30.0 4.0 71.0 0.0 . 91 RXRG 6258 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 165376062 165376062 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RXRG NM_006917 exon9 c.G1231A p.E411K GCTGTTCCGGATA . 74.0 7.0 34.0 0.0 . 186 S1PR5 53637 ucsc.edu;bcgsc.ca 37 19 10625491 10625491 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . S1PR5 NM_030760 exon2 c.G197T p.R66L TGGAAGCGCGGGT . 24.0 4.0 27.0 0.0 . 523 SDCCAG3 10807 ucsc.edu;bcgsc.ca 37 9 139298615 139298615 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SDCCAG3 NM_001039707 exon9 c.A1100G p.E367G AGGGCTTCATTCT . 44.0 4.0 66.0 0.0 . 90 SEMA3A 10371 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 83590805 83590805 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SEMA3A NM_006080 exon17 c.G2198T p.R733L TGCCGACGTTGTT . 182.0 76.0 234.0 0.0 . 156 SEMA4F 10505 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 74901762 74901762 + Silent SNP G G C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SEMA4F NM_004263 exon8 c.G960C p.G320G GCTTGGGGCAGGG . 93.0 27.0 140.0 0.0 . 93 SERPINC1 462 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 173878764 173878764 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SERPINC1 NM_000488 exon5 c.G1079A p.G360D CTGAAGCCGTCCT . 40.0 7.0 34.0 0.0 . 227 SETX 23064 ucsc.edu;bcgsc.ca 37 9 135210076 135210076 + Missense_Mutation SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SETX NM_015046 exon7 c.A757T p.M253L AATCCATGGCTTG . 39.0 4.0 72.0 0.0 . 93 SIN3B 23309 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 16989085 16989085 + Frame_Shift_Del DEL G G - novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SIN3B NM_015260 exon19 c.3142delG p.V1048fs GTGGGCGTGGAGA . 16.0 16.0 20.0 0.0 . 228 SLC22A6 9356 ucsc.edu;bcgsc.ca 37 11 62751010 62751010 + Silent SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SLC22A6 NM_153276 exon3 c.G627T p.L209L CTCACTCAGTGTC . 30.0 4.0 40.0 0.0 . 90 SLC7A5 8140 ucsc.edu;bcgsc.ca 37 16 87868106 87868106 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SLC7A5 NM_003486 exon9 c.G1382T p.G461V GTGAAGCCGATGC . 45.0 4.0 80.0 0.0 . 90 SMYD1 150572 ucsc.edu;bcgsc.ca 37 2 88410004 88410004 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SMYD1 NM_198274 exon10 c.C1446T p.S482S GCCATCCCCAGCT . 45.0 4.0 47.0 0.0 . 229 SND1 27044 ucsc.edu;bcgsc.ca 37 7 127344990 127344990 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SND1 NM_014390 exon8 c.C938A p.A313E TGAGGGCGGCAGA . 43.0 4.0 68.0 0.0 . 92 SPEF2 79925 broad.mit.edu;ucsc.edu;mdanderson.org 37 5 35618118 35618118 + Nonsense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SPEF2 NM_024867 exon1 c.C19T p.Q7X CTGTGCCAGTGGC . 118.0 15.0 99.0 0.0 . 26 SPINK9 643394 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 147718126 147718126 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SPINK9 NM_001040433 exon3 c.G173T p.G58V CTGATGGCAAAAC . 469.0 131.0 370.0 2.0 . 22 SPTBN4 57731 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 41009905 41009905 + Missense_Mutation SNP G G C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SPTBN4 NM_020971 exon12 c.G1531C p.D511H CAGCGTGACAGCG . 63.0 40.0 65.0 1.0 . 94 SRBD1 55133 ucsc.edu;bcgsc.ca 37 2 45832562 45832562 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SRBD1 NM_018079 exon2 c.A19G p.R7G TCGCTCTTCTTGG . 44.0 4.0 47.0 0.0 . 90 SYNE2 23224 ucsc.edu;bcgsc.ca 37 14 64678684 64678684 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SYNE2 NM_182914 exon104 c.C18729A p.F6243L GCATTTCACCAAC . 18.0 4.0 55.0 0.0 . 164 SYNPO2 171024 ucsc.edu;bcgsc.ca 37 4 119952907 119952907 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SYNPO2 NM_001128934 exon4 c.T2977C p.S993P AAGTCATCAGTCA . 36.0 4.0 75.0 0.0 . 92 TACR2 6865 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 71175879 71175879 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TACR2 NM_001057 exon1 c.C201T p.V67V GTTGGTGACTGTG . 82.0 27.0 50.0 0.0 . 522 TADA2B 93624 ucsc.edu;bcgsc.ca 37 4 7055982 7055982 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TADA2B NM_152293 exon2 c.A464G p.D155G CGCTGGACATCTC . 30.0 4.0 50.0 0.0 . 68 TBL3 10607 ucsc.edu;bcgsc.ca 37 16 2027783 2027783 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TBL3 NM_006453 exon18 c.A1940G p.Q647R CCAGGCAAGAGGA . 50.0 4.0 66.0 0.0 . 90 TBPL1 9519 ucsc.edu;bcgsc.ca 37 6 134308131 134308131 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TBPL1 NM_004865 exon7 c.G514A p.E172K GCTGTGGAACAGA . 37.0 4.0 69.0 0.0 . 90 TCP1 6950 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 160206479 160206479 + Missense_Mutation SNP G G C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TCP1 NM_030752 exon5 c.C427G p.L143V TTCCCAGTTCATC . 49.0 15.0 73.0 0.0 . 153 TCTN2 79867 ucsc.edu;bcgsc.ca 37 12 124189231 124189231 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TCTN2 NM_024809 exon15 c.A1765G p.T589A GTAGAGACAAGGT . 35.0 4.0 66.0 0.0 . 91 TDRD7 23424 ucsc.edu;bcgsc.ca 37 9 100232863 100232863 + Silent SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TDRD7 NM_014290 exon9 c.T1653C p.F551F TGGTTTTAGTGAA . 39.0 4.0 76.0 0.0 . 93 TFAP2C 7022 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 55212882 55212882 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TFAP2C NM_003222 exon7 c.G1166A p.C389Y AGAACTGCTTGTC . 63.0 7.0 72.0 0.0 . 514 TIRAP 114609 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 126162958 126162958 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TIRAP NM_148910 exon5 c.A654G p.L218L TAAGCTACTACAG . 20.0 5.0 25.0 0.0 . 523 TJP2 9414 ucsc.edu;bcgsc.ca 37 9 71849423 71849423 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TJP2 NM_001170416 exon12 c.A1833G p.K611K CCCTAAAGGTGAA . 47.0 4.0 75.0 0.0 . 115 TMC7 79905 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 19049310 19049310 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TMC7 NM_024847 exon8 c.G1120T p.G374W GTTTTAGGGGCAT . 161.0 85.0 177.0 0.0 . 93 TMEM120A 83862 ucsc.edu;bcgsc.ca 37 7 75621559 75621559 + Splice_Site SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . . . . . CCTCTGCTGGGAG . 35.0 4.0 31.0 0.0 . . TMEM132B 114795 ucsc.edu;bcgsc.ca 37 12 126135429 126135429 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TMEM132B NM_052907 exon7 c.A1829G p.E610G TGGAGGAGCCGAA . 34.0 4.0 54.0 1.0 . 185 TMEM181 57583 ucsc.edu;bcgsc.ca 37 6 159005044 159005044 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TMEM181 NM_020823 exon4 c.T638C p.L213P TATGGCTGACATG . 32.0 4.0 80.0 0.0 . 70 TMEM200A 114801 ucsc.edu;bcgsc.ca 37 6 130762511 130762511 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TMEM200A NM_001258277 exon3 c.T944C p.L315P ACAACCTCAAAAG . 42.0 4.0 82.0 1.0 . 23 TMEM260 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 57088308 57088308 + Missense_Mutation SNP C C G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . NM_017799 exon11 c.C1286G p.S429C TCACCTCTATGCC . 25.0 5.0 48.0 0.0 . . TMPRSS7 344805 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 111764780 111764780 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TMPRSS7 NM_001042575 exon4 c.G342A p.V114V CTCTGTGGTACTA . 322.0 117.0 372.0 0.0 . 70 TNFRSF4 7293 ucsc.edu;bcgsc.ca 37 1 1146981 1146981 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TNFRSF4 NM_003327 exon7 c.T788C p.I263T TCTTGGATGGGGG . 41.0 4.0 50.0 1.0 . 227 TNKS1BP1 85456 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 57080662 57080662 + Silent SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TNKS1BP1 NM_033396 exon5 c.C1500A p.I500I TTCAGTGATGGGG . 70.0 18.0 18.0 0.0 . 91 TNKS1BP1 85456 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 57080520 57080520 + Missense_Mutation SNP G G C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TNKS1BP1 NM_033396 exon5 c.C1642G p.P548A TGCTTGGATCATC . 137.0 25.0 48.0 1.0 . 91 TNKS1BP1 85456 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 57080675 57080675 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TNKS1BP1 NM_033396 exon5 c.C1487T p.P496L GAGGGAGGCGGGG . 65.0 15.0 17.0 0.0 . 91 TNKS1BP1 85456 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 57080609 57080609 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TNKS1BP1 NM_033396 exon5 c.C1553T p.S518F CTGCTGGAAACGG . 85.0 21.0 28.0 0.0 . 91 TRIM44 54765 broad.mit.edu;ucsc.edu;mdanderson.org 37 11 35684743 35684743 + Silent SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TRIM44 NM_017583 exon1 c.G84T p.G28G TCCGGGGGCCGAG . 25.0 9.0 17.0 0.0 . 227 TRNT1 51095 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 3186326 3186329 + Frame_Shift_Del DEL AGTT AGTT - novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 AGTT AGTT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TRNT1 NM_182916 exon5 c.540_543del p.180_181del TAAGAAAGTTAGA . 155.0 23.0 204.0 0.0 . 90 TRPV2 51393 ucsc.edu;bcgsc.ca 37 17 16335396 16335396 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TRPV2 NM_016113 exon12 c.A1771G p.R591G CAGTACAGGGGTA . 48.0 4.0 66.0 0.0 . 91 TRRAP 8295 ucsc.edu;bcgsc.ca 37 7 98562268 98562268 + Silent SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TRRAP NM_001244580 exon47 c.C6825A p.L2275L GATCCTCAAGTCT . 30.0 4.0 41.0 0.0 . 923 TSC2 7249 ucsc.edu;bcgsc.ca 37 16 2136204 2136204 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TSC2 NM_000548 exon37 c.A4673G p.E1558G ACAGCGAGCTCGC . 37.0 4.0 33.0 0.0 . 1908 TTC28 23331 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 28504014 28504014 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . NM_001145418 exon7 c.C1819T p.R607W CTCCCCGAGAGCA . 35.0 6.0 51.0 0.0 . . TTC3 7267 broad.mit.edu;bcgsc.ca;mdanderson.org 37 21 38532006 38532006 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TTC3 NM_001001894 exon29 c.C2998T p.R1000C GACAGCCGCTGTA . 26.0 6.0 43.0 0.0 . 590 TTC3 7267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 38538901 38538901 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TTC3 NM_001001894 exon33 c.A4385G p.Q1462R ACGTGCAGATGGT . 67.0 21.0 108.0 0.0 . 590 TTLL3 26140 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 9870684 9870685 + Frame_Shift_Del DEL GA GA - novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 GA GA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TTLL3 NM_001025930 exon10 c.1588_1589del p.530_530del CACCTGGAGAACT . 36.0 15.0 50.0 0.0 . 585 TTYH3 80727 ucsc.edu;bcgsc.ca 37 7 2695773 2695773 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TTYH3 NM_025250 exon10 c.C1068A p.N356K GGTGAACCTGCAG . 65.0 7.0 66.0 0.0 . 90 TUBB4B 10383 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 140137668 140137668 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . NM_006088 exon4 c.T998C p.V333A TTAATGTCCAAAA . 76.0 24.0 143.0 1.0 . . TUBGCP2 10844 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 135099037 135099037 + Silent SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TUBGCP2 NM_001256617 exon13 c.G1902T p.T634T CAGCTCCGTGGGG . 39.0 16.0 49.0 0.0 . 90 ULK2 9706 ucsc.edu;bcgsc.ca 37 17 19684355 19684355 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ULK2 NM_001142610 exon24 c.T2702C p.L901P TTGGCAAGATGCA . 45.0 4.0 82.0 1.0 . 334 UNC79 57578 ucsc.edu;bcgsc.ca 37 14 94046510 94046510 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . NM_020818 exon19 c.G1918T p.D640Y CAAGATGATGGAA . 46.0 4.0 68.0 1.0 . . USP14 9097 ucsc.edu;bcgsc.ca 37 18 210405 210405 + Silent SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . USP14 NM_005151 exon15 c.T1245C p.C415C TAATTGTGGATAC . 48.0 4.0 100.0 0.0 . 659 USP15 9958 ucsc.edu;bcgsc.ca 37 12 62783237 62783237 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . USP15 NM_001252078 exon12 c.A1500G p.G500G AATTGGAAACATA . 58.0 6.0 55.0 0.0 . 1084 USP25 29761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 17197365 17197365 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . USP25 NM_013396 exon12 c.A1289G p.Q430R TATTACAACAAAG . 157.0 36.0 275.0 0.0 . 663 USP48 84196 ucsc.edu;bcgsc.ca 37 1 22050539 22050539 + Silent SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . USP48 NM_032236 exon12 c.A1500G p.E500E TGTTGATTCATCC . 46.0 4.0 50.0 0.0 . 659 USP5 8078 ucsc.edu;bcgsc.ca 37 12 6970233 6970233 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . USP5 NM_003481 exon12 c.G1461A p.M487I CATCATGCAGCTG . 47.0 4.0 49.0 0.0 . 659 VAV1 7409 ucsc.edu;bcgsc.ca 37 19 6825416 6825416 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 VAV1,NS,malignant_melanoma,-1 VAV1 NM_005428 exon8 c.A826G p.R276G AAGGAGAGGTGAG . 35.0 4.0 34.0 0.0 . 1276 WBP2 23558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 73851333 73851333 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . WBP2 NM_012478 exon1 c.A46G p.N16D TGTTATTGACGAT . 105.0 98.0 85.0 0.0 . 90 WDR52 55779 ucsc.edu;bcgsc.ca 37 3 113152468 113152468 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . WDR52 NM_001164496 exon2 c.T44C p.V15A GATGTAACTGATT . 40.0 4.0 63.0 0.0 . 90 WHSC1 7468 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 1957733 1957733 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . WHSC1 NM_133335 exon15 c.A2699G p.H900R TTTGCCATCCCAA . 89.0 14.0 110.0 0.0 . 664 XIRP2 129446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 168097234 168097234 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . XIRP2 NM_001199143 exon8 c.G1129T p.V377F CAATATGTTCAAG . 164.0 71.0 184.0 0.0 . 104 YES1 7525 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 742994 742994 + Silent SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . YES1 NM_005433 exon8 c.A984G p.R328R ATCATGTCTTAAT . 132.0 69.0 184.0 0.0 . 547 YES1 7525 ucsc.edu;bcgsc.ca 37 18 747938 747938 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . YES1 NM_005433 exon4 c.A452G p.D151G ATGGAATCTGCAG . 37.0 4.0 58.0 0.0 . 547 YOD1 55432 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 207224106 207224106 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . YOD1 NM_018566 exon1 c.C270T p.L90L TCCGACGAGGATT . 123.0 11.0 68.0 0.0 . 522 ZAN 7455 ucsc.edu;bcgsc.ca 37 7 100391477 100391477 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZAN . . . . CAGAGCTGTATGA . 25.0 4.0 39.0 0.0 . 142 ZBTB6 10773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 125674263 125674263 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZBTB6 NM_006626 exon2 c.A89G p.N30S AATAAATTCTGCT . 65.0 56.0 112.0 0.0 . 90 ZCCHC6 79670 ucsc.edu;bcgsc.ca 37 9 88932158 88932158 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZCCHC6 NM_024617 exon17 c.G3250T p.A1084S CTCTTGCTAATTC . 37.0 4.0 37.0 0.0 . 92 ZFP106 64397 ucsc.edu;bcgsc.ca 37 15 42720252 42720252 + Silent SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZFP106 NM_022473 exon12 c.A4893T p.G1631G TGCCAGTCCCGCA . 43.0 4.0 48.0 0.0 . 515 ZFYVE28 57732 ucsc.edu;bcgsc.ca 37 4 2275874 2275874 + Silent SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZFYVE28 NM_020972 exon9 c.T2121C p.A707A TGGGGCAGCATGC . 41.0 5.0 53.0 0.0 . 93 ZNF131 7690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 43161948 43161948 + Silent SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZNF131 NM_003432 exon6 c.T867C p.T289T AAGAACTGGGAAA . 145.0 78.0 169.0 0.0 . 90 ZNF534 147658 ucsc.edu;bcgsc.ca 37 19 52941840 52941840 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZNF534 NM_001143939 exon4 c.A1166G p.H389R AAGTTCATACTGG . 41.0 4.0 58.0 0.0 . 68 ZNF577 84765 ucsc.edu;bcgsc.ca 37 19 52375795 52375795 + Missense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZNF577 NM_032679 exon7 c.T1448A p.V483E TCTGATACAATAT . 38.0 5.0 43.0 0.0 . 91 ZNF646 9726 ucsc.edu;bcgsc.ca 37 16 31091072 31091072 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZNF646 NM_014699 exon2 c.G3427A p.G1143R GAGGAGGGGCCGG . 34.0 4.0 38.0 0.0 . 153 ZNF671 79891 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58232430 58232430 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZNF671 NM_024833 exon4 c.G1024A p.E342K TGCACTCGTATGG . 34.0 6.0 48.0 0.0 . 91 ZNF69 7620 ucsc.edu;bcgsc.ca 37 19 11998759 11998759 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZNF69 NM_021915 exon1 c.G21T p.R7S TCACAGGAGGTGT . 37.0 4.0 40.0 0.0 . 91 ZNF827 152485 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 146859553 146859553 + Missense_Mutation SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZNF827 NM_178835 exon1 c.A7T p.R3W TCCTCCTGGGCAT . 96.0 68.0 160.0 0.0 . 22 ZNF831 128611 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 20 57767023 57767023 + Silent SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZNF831 NM_178457 exon1 c.C949A p.R317R CTGCAGCGGCAGC . 16.0 10.0 19.0 0.0 . 126 ZSWIM8 23053 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 75548453 75548453 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . NM_015037 exon2 c.G234A p.E78E GGTGGAGCTGTCA . 44.0 6.0 58.0 0.0 . . CRIP3 401262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 43274045 43274046 + Missense_Mutation DNP TT TT AC novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 TT TT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . . . . p.K136V ATCACCTTCTCAG . 51.0 47.0 43.0 0.0 . .