Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
A2ML1	144568	ucsc.edu;bcgsc.ca	37	12	8982345	8982345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	A2ML1	NM_144670	exon4	c.G432T	p.M144I	CACCATGGATAGC	.	39.0	5.0	35.0	0.0	.	93
ABCC12	94160	broad.mit.edu;bcgsc.ca	37	16	48149506	48149506	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ABCC12	NM_033226	exon13	c.C1809T	p.L603L	CCCAGAGAGGTTG	.	23.0	4.0	25.0	0.0	.	93
ABCC3	8714	ucsc.edu;bcgsc.ca	37	17	48761110	48761110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ABCC3	NM_003786	exon27	c.G3947T	p.G1316V	ACGGTGGCGAGAA	.	19.0	4.0	23.0	0.0	.	93
ABT1	29777	ucsc.edu;bcgsc.ca	37	6	26598733	26598733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ABT1	NM_013375	exon3	c.C679T	p.R227W	GCAGCACGGCCAG	.	50.0	4.0	44.0	0.0	.	91
ACSM1	116285	ucsc.edu;bcgsc.ca	37	16	20682931	20682931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACSM1	NM_052956	exon4	c.T674C	p.F225S	CTGGTGAAGAAGA	.	41.0	4.0	57.0	0.0	.	91
ACTC1	70	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35083385	35083385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACTC1	NM_005159	exon6	c.T920C	p.M307T	GGGTACATAGTGG	.	79.0	10.0	72.0	0.0	.	92
ALG13	79868	ucsc.edu;bcgsc.ca	37	X	110951316	110951316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ALG13	NM_001099922	exon4	c.T445C	p.S149P	CAAGATTCTGCAG	.	40.0	4.0	30.0	0.0	.	130
ALOXE3	59344	broad.mit.edu;ucsc.edu	37	17	8012628	8012628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ALOXE3	NM_001165960	exon12	c.C1822T	p.L608F	TCATGAGGTAGAT	.	32.0	5.0	53.0	0.0	.	229
AMOTL1	154810	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	94602492	94602492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AMOTL1	NM_130847	exon12	c.A2618G	p.K873R	GCAGCAAGGACAG	.	61.0	5.0	65.0	0.0	.	91
AMT	275	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49458964	49458964	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AMT	NM_001164712	exon3	c.T300C	p.S100S	CACTAGACTCTCC	.	87.0	9.0	82.0	0.0	.	91
AP1G2	8906	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24032935	24032935	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AP1G2	NM_003917	exon12	c.G1222C	p.A408P	CTGCAGCCAGCAG	.	39.0	4.0	43.0	0.0	.	45
APOM	55937	ucsc.edu;bcgsc.ca	37	6	31625487	31625487	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	APOM	NM_019101	exon5	c.T528C	p.T176T	ATTGACTCCTAGG	.	32.0	4.0	44.0	0.0	.	90
APTX	54840	ucsc.edu;bcgsc.ca	37	9	33001565	33001565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	APTX	NM_001195252	exon1	c.G38T	p.R13I	CCTTACCTCCAGA	.	25.0	4.0	23.0	0.0	.	91
ASB12	142689	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63445128	63445128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ASB12	NM_130388	exon2	c.A403G	p.S135G	AGATGCTACCACC	.	48.0	15.0	47.0	0.0	.	228
ATN1	1822	ucsc.edu;bcgsc.ca	37	12	7047718	7047718	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATN1	NM_001007026	exon7	c.A2592G	p.E864E	ATTTGAACCGGGC	.	35.0	4.0	40.0	1.0	.	139
ATP6V0A2	23545	broad.mit.edu;bcgsc.ca	37	12	124221770	124221770	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATP6V0A2	NM_012463	exon9	c.T990C	p.C330C	CTGGTGTCCCGAG	.	69.0	5.0	65.0	0.0	.	92
ATP6V1H	51606	ucsc.edu;bcgsc.ca	37	8	54742070	54742070	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATP6V1H	NM_015941	exon4	c.G240T	p.L80L	AGTCATCAGATTT	.	45.0	4.0	25.0	0.0	.	90
ATP8A2	51761	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26411378	26411378	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	ATP8A2,NS,carcinoma,+2	ATP8A2	NM_016529	exon29	c.C2832T	p.P944P	GTTTCCCCAGCTC	.	61.0	13.0	50.0	0.0	.	138
AXL	558	ucsc.edu;bcgsc.ca	37	19	41762488	41762488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AXL	NM_021913	exon18	c.A2168G	p.D723G	TAGCTGACCGTGT	.	39.0	4.0	54.0	0.0	.	1403
BIRC6	57448	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32626685	32626685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BIRC6	NM_016252	exon8	c.G1412A	p.G471E	TGGAAGGAGATAG	.	97.0	10.0	86.0	1.0	.	233
BTN3A1	11119	ucsc.edu;bcgsc.ca	37	6	26413718	26413718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BTN3A1	NM_007048	exon10	c.C1340T	p.P447L	CTGAGCCCAGAAC	.	59.0	5.0	70.0	0.0	.	92
C14orf182	283551	ucsc.edu;bcgsc.ca	37	14	50459531	50459531	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C14orf182	NM_001012706	exon2	c.A267G	p.R89R	TGCTGCTCTCCTG	.	47.0	5.0	29.0	0.0	.	90
C1orf213	148898	ucsc.edu;bcgsc.ca	37	1	23696028	23696028	+	RNA	SNP	T	T	C	rs147377149		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C1orf213	.	.	.	.	GTAGACTTGCAGG	.	44.0	4.0	38.0	0.0	T|1.000;C|0.000	68
C21orf54	728409	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34540848	34540848	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	.	.	.	.	TGTCCGCGCTTGA	.	60.0	9.0	66.0	0.0	.	.
C9orf152	401546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	112963511	112963511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C9orf152	NM_001012993	exon2	c.G437A	p.G146E	TCAGATCCCACAA	.	107.0	18.0	141.0	0.0	.	90
CACNA1D	776	ucsc.edu;bcgsc.ca	37	3	53835346	53835346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CACNA1D	NM_000720	exon43	c.C5362T	p.H1788Y	GCTGCCCATGGAA	.	42.0	4.0	53.0	0.0	.	100
CALHM1	255022	ucsc.edu;bcgsc.ca	37	10	105218131	105218131	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CALHM1	NM_001001412	exon1	c.C378A	p.L126L	GGCACAGAGGAAG	.	31.0	4.0	57.0	0.0	.	91
CAMTA2	23125	ucsc.edu;bcgsc.ca	37	17	4883887	4883887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CAMTA2	NM_001171167	exon9	c.A799G	p.S267G	TCGTGCTGCTGCA	.	43.0	4.0	62.0	0.0	.	91
CAPS2	84698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75692559	75692559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CAPS2	NM_032606	exon12	c.A1009G	p.T337A	CATTTGTTCTAGA	.	95.0	12.0	76.0	0.0	.	92
CCDC60	160777	ucsc.edu;bcgsc.ca	37	12	119916935	119916935	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CCDC60	NM_178499	exon4	c.T378C	p.A126A	GGGAGCTAGAGTC	.	45.0	4.0	40.0	0.0	.	93
CDK7	1022	ucsc.edu;bcgsc.ca	37	5	68555712	68555712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CDK7	NM_001799	exon7	c.C476A	p.A159D	GCCTGGCCAAATC	.	43.0	4.0	36.0	0.0	.	964
CHD9	80205	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	53340280	53340280	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CHD9	NM_025134	exon32	c.6751delT	p.Y2251fs	GGTGGATATATGC	.	97.0	15.0	90.0	0.0	.	272
CHST2	9435	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	142841015	142841015	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CHST2	NM_004267	exon2	c.C1357T	p.Q453X	ATGGAGCAGTTTG	.	74.0	11.0	86.0	0.0	.	93
CIR1	9541	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175244954	175244954	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CIR1	NM_004882	exon6	c.C342T	p.I114I	ATCTCTGATGTTC	.	144.0	17.0	96.0	0.0	.	153
CNPPD1	27013	ucsc.edu;bcgsc.ca	37	2	220037312	220037312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CNPPD1	NM_015680	exon8	c.G1229A	p.G410D	ACCTAGCCTGGGA	.	30.0	4.0	38.0	0.0	.	90
COL11A1	1301	broad.mit.edu;bcgsc.ca	37	1	103481238	103481238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL11A1	NM_080629	exon12	c.A1510G	p.M504V	TCAACATAGTACC	.	260.0	13.0	223.0	1.0	.	586
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103343720	103343720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL11A1	NM_080629	exon67	c.C5312A	p.S1771Y	TTTCTGGACTGTA	.	103.0	14.0	48.0	0.0	.	586
COL15A1	1306	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101829192	101829192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL15A1	NM_001855	exon40	c.T3680C	p.F1227S	TGCCATTTTCTGG	.	46.0	8.0	45.0	0.0	.	96
CPOX	1371	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	98304402	98304402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CPOX	NM_000097	exon5	c.G1055T	p.R352L	ACAAAGCGAAACA	.	75.0	6.0	71.0	0.0	.	90
CRCP	27297	ucsc.edu;bcgsc.ca	37	7	65617296	65617296	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CRCP	NM_014478	exon6	c.G399A	p.K133K	GCAGAAGAAGAAT	.	34.0	4.0	38.0	0.0	.	90
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	37678905	37678906	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CSNK1A1L	NM_145203	exon1	c.489_490insA	p.K163fs	TCTGTACTTTTTG	.	286.0	43.0	323.0	0.0	.	396
CUX1	1523	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	101671397	101671397	+	Missense_Mutation	SNP	C	C	T	rs143267032	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CUX1	NM_181500	exon3	c.C194T	p.A65V	AGGTAGCGCCGCT	.	81.0	9.0	82.0	0.0	C|1.000;G|0.000	160
CYB5R1	51706	ucsc.edu;bcgsc.ca	37	1	202935660	202935660	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CYB5R1	NM_016243	exon3	c.T234C	p.P78P	ACCCACAGGCAGC	.	41.0	4.0	53.0	0.0	.	91
CYP2A13	1553	ucsc.edu;bcgsc.ca	37	19	41595994	41595994	+	Missense_Mutation	SNP	G	G	A	rs138225940	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CYP2A13	NM_000766	exon3	c.G386A	p.R129H	TCCGGCGCTTCTC	.	49.0	4.0	54.0	0.0	G|0.999;C|0.001	93
DDB2	1643	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	47256456	47256456	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DDB2	NM_000107	exon6	c.C851A	p.S284X	TCTACTCGCTGCC	.	63.0	11.0	86.0	0.0	.	971
DHX16	8449	ucsc.edu;bcgsc.ca	37	6	30633483	30633483	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DHX16	NM_003587	exon5	c.C694A	p.R232R	ACTCTCGGCGAGA	.	16.0	4.0	21.0	0.0	.	228
DNAH10	196385	ucsc.edu;bcgsc.ca	37	12	124341692	124341692	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH10	NM_207437	exon36	c.T6174C	p.D2058D	TTCGGATCTGTTT	.	46.0	5.0	46.0	0.0	.	95
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21940749	21940749	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH11	.	.	.	.	GACCTACGAGTGC	.	41.0	8.0	63.0	0.0	.	146
DNAH1	25981	ucsc.edu;bcgsc.ca	37	3	52388935	52388935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH1	NM_015512	exon21	c.T3557C	p.I1186T	CCTACATCCTGAA	.	46.0	4.0	50.0	0.0	.	67
DNAH5	1767	broad.mit.edu;bcgsc.ca	37	5	13716732	13716732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH5	NM_001369	exon74	c.A12773G	p.D4258G	TCATAGTCGTCAG	.	106.0	8.0	99.0	0.0	.	182
DNAH8	1769	broad.mit.edu;bcgsc.ca	37	6	38899596	38899596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH8	NM_001206927	exon76	c.G11284T	p.G3762C	AAAGTCGGTGATA	.	153.0	8.0	77.0	0.0	.	615
DNAJC24	120526	broad.mit.edu;bcgsc.ca	37	11	31436406	31436406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAJC24	NM_181706	exon3	c.G160A	p.E54K	GTGGAGGAATGTG	.	97.0	10.0	68.0	0.0	.	153
DOK7	285489	ucsc.edu;bcgsc.ca	37	4	3491480	3491480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DOK7	NM_001164673	exon6	c.G718A	p.A240T	GGAGAAGCGGCTG	.	50.0	5.0	64.0	0.0	.	91
DPAGT1	1798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118967763	118967763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DPAGT1	NM_001382	exon9	c.G1172A	p.S391N	ATGGCACTGCCCA	.	110.0	12.0	117.0	1.0	.	221
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154645528	154645528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DPP6	NM_130797	exon17	c.G1705T	p.D569Y	ACAACAGATAAGA	.	154.0	41.0	145.0	0.0	.	652
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28648117	28648117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DSC2	NM_024422	exon16	c.A2570G	p.Y857C	TAGTTATATGTCA	.	133.0	30.0	93.0	0.0	.	517
EEF1A1	1915	broad.mit.edu;bcgsc.ca	37	6	74227627	74227627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EEF1A1	NM_001402	exon8	c.C1295T	p.T432I	GCAACTGTCTGTC	.	113.0	16.0	84.0	0.0	.	226
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74227628	74227628	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EEF1A1	NM_001402	exon8	c.A1294T	p.T432S	CAACTGTCTGTCT	.	113.0	18.0	84.0	0.0	.	226
EFHB	151651	ucsc.edu;bcgsc.ca	37	3	19962061	19962061	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EFHB	NM_144715	exon3	c.790-2A>G	.	CCTGCCTTTGGGG	.	39.0	5.0	51.0	0.0	.	22
EIF1AD	84285	ucsc.edu;bcgsc.ca	37	11	65766855	65766855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EIF1AD	NM_001242483	exon5	c.T319C	p.S107P	CTTCAGAGAAGGC	.	44.0	4.0	41.0	0.0	.	68
ELK4	2005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205588972	205588972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ELK4	NM_021795	exon3	c.G1202A	p.C401Y	GTCACACATAACC	.	103.0	17.0	82.0	0.0	.	658
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	79356902	79356902	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ELTD1	NM_022159	exon16	c.2011-1G>A	.	TTGAATCTAAAAA	.	286.0	40.0	181.0	0.0	.	24
ESPNL	339768	ucsc.edu;bcgsc.ca	37	2	239010582	239010582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ESPNL	NM_194312	exon2	c.G295T	p.D99Y	TGGTAGGACCAAG	.	20.0	4.0	47.0	0.0	.	69
FAM124B	79843	ucsc.edu;bcgsc.ca	37	2	225265789	225265789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FAM124B	NM_024785	exon1	c.A697G	p.T233A	CCTGAGTCTGCCA	.	26.0	4.0	38.0	0.0	.	92
FAM169B	283777	ucsc.edu;bcgsc.ca	37	15	98995196	98995196	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_182562	exon5	c.T228C	p.P76P	AAAGACAGGCAGC	.	38.0	5.0	50.0	0.0	.	.
FCGR3B	2215	broad.mit.edu;bcgsc.ca	37	1	161600871	161600871	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FCGR3B	NM_001271035	exon1	c.T122G	p.L41R	GGGAGGAGCAGCT	.	82.0	8.0	103.0	0.0	.	22
FREM1	158326	ucsc.edu;bcgsc.ca	37	9	14851597	14851597	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FREM1	NM_144966	exon7	c.T837C	p.S279S	CCACGCACTCTCT	.	38.0	4.0	27.0	0.0	.	138
GAGE10	643832	ucsc.edu;bcgsc.ca	37	X	49173765	49173765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GAGE10	NM_001098413	exon4	c.A326G	p.E109G	CTGAAGAAGGTAG	.	55.0	5.0	74.0	0.0	.	22
GAK	2580	ucsc.edu;bcgsc.ca	37	4	887731	887731	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GAK	NM_005255	exon8	c.C808A	p.R270R	CTATTCGAAGTTT	.	50.0	4.0	95.0	0.0	.	568
GAS2L2	246176	ucsc.edu;bcgsc.ca	37	17	34079489	34079489	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GAS2L2	NM_139285	exon1	c.C381A	p.I127I	ACCTTGGATGCCC	.	39.0	4.0	44.0	0.0	.	227
GCNT2	2651	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10586875	10586875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GCNT2	NM_145655	exon1	c.G653T	p.G218V	CCCCAGGGGTGCT	.	88.0	16.0	91.0	0.0	.	92
GDF9	2661	ucsc.edu;bcgsc.ca	37	5	132197841	132197841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GDF9	NM_005260	exon2	c.G805A	p.D269N	TTGTGTCATTCAA	.	43.0	4.0	36.0	0.0	.	227
GIPC3	126326	ucsc.edu;bcgsc.ca	37	19	3586569	3586569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GIPC3	NM_133261	exon2	c.T302C	p.F101S	AGGACTTCATCTT	.	33.0	4.0	56.0	0.0	.	135
GNAS	2778	ucsc.edu;bcgsc.ca	37	20	57415853	57415853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GNAS	NM_016592	exon1	c.C692A	p.P231Q	CGTCCCCGGAGTC	.	22.0	4.0	26.0	0.0	.	4767
GPR116	221395	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	46847716	46847716	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GPR116	NM_015234	exon9	c.875delT	p.V292fs	TCACACACCAGAC	.	90.0	15.0	82.0	0.0	.	91
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105623945	105623945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GRIA4	NM_001077244	exon4	c.G486T	p.R162S	AGACAGGGGTAAG	.	59.0	10.0	58.0	0.0	.	230
GRTP1	79774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113980034	113980034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GRTP1	NM_024719	exon7	c.A863G	p.D288G	AACTTATCGCAAA	.	84.0	9.0	145.0	0.0	.	90
GTDC1	79712	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	144903283	144903283	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GTDC1	NM_001006636	exon5	c.T203A	p.L68H	AGGTTAAGCACTG	.	61.0	7.0	33.0	0.0	.	91
HIC2	23119	ucsc.edu;bcgsc.ca	37	22	21800865	21800865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HIC2	NM_015094	exon3	c.T1681C	p.F561L	AAGCCCTTCGCCT	.	35.0	4.0	54.0	0.0	.	703
HIPK1	204851	ucsc.edu;bcgsc.ca	37	1	114515662	114515662	+	Missense_Mutation	SNP	C	C	A	rs17853522	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HIPK1	NM_198268	exon16	c.C3161A	p.A1054E	CATCGGCGGCTCC	.	43.0	4.0	44.0	0.0	C|0.999;T|0.001	361
IMPDH2	3615	ucsc.edu;bcgsc.ca	37	3	49066740	49066740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IMPDH2	NM_000884	exon1	c.A44G	p.D15G	CCGTCGTCTGGCA	.	21.0	4.0	25.0	0.0	.	227
IMPG1	3617	ucsc.edu;bcgsc.ca	37	6	76660465	76660465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IMPG1	NM_001563	exon13	c.C1638A	p.F546L	CTCCAAGAAATGA	.	35.0	4.0	26.0	0.0	.	93
INSR	3643	ucsc.edu;bcgsc.ca	37	19	7117231	7117231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	INSR	NM_000208	exon22	c.C3985A	p.L1329M	GGTCCAGGGGCAC	.	40.0	4.0	49.0	1.0	.	1381
ITGA8	8516	ucsc.edu;bcgsc.ca	37	10	15760772	15760772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ITGA8	NM_003638	exon2	c.C336A	p.D112E	GGTGGTGTCAAAC	.	42.0	4.0	47.0	0.0	.	230
ITIH3	3699	ucsc.edu;bcgsc.ca	37	3	52828855	52828855	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ITIH3	NM_002217	exon1	c.T36C	p.A12A	CTTGGCTCTGCTC	.	44.0	4.0	37.0	1.0	.	93
KBTBD12	166348	hgsc.bcm.edu;broad.mit.edu	37	3	127642837	127642838	+	In_Frame_Ins	INS	-	-	TCA	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KBTBD12	NM_207335	exon1	c.933_934insTCA	p.I311delinsIS	TTTCATCTCATCT	.	176.0	24.0	127.0	0.0	.	23
KCNJ15	3772	broad.mit.edu;bcgsc.ca	37	21	39671899	39671899	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KCNJ15	NM_002243	exon4	c.T716A	p.I239N	TCCACGTGGACTC	.	16.0	3.0	18.0	0.0	.	157
KDM5D	8284	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	21897301	21897301	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KDM5D	NM_001146705	exon8	c.G870A	p.L290L	TAGGCTCAAGTGC	.	74.0	21.0	39.0	0.0	.	560
KIAA1804	0	broad.mit.edu;bcgsc.ca	37	1	233512249	233512249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA1804	NM_032435	exon8	c.G1900T	p.A634S	CCCTTGGCTTCAT	.	100.0	10.0	90.0	1.0	.	523
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10381913	10381913	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIF1B	NM_015074	exon22	c.A2218C	p.K740Q	AAAAAGAAGGTAT	.	80.0	19.0	63.0	0.0	.	93
KIF21B	23046	broad.mit.edu;bcgsc.ca	37	1	200959272	200959272	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIF21B	NM_017596	exon20	c.G3024A	p.E1008E	CTTGGTCTCCTCC	.	100.0	10.0	128.0	1.0	.	96
KLHL18	23276	ucsc.edu;bcgsc.ca	37	3	47376272	47376272	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KLHL18	NM_025010	exon6	c.T861C	p.A287A	CATCGCTGGACTT	.	40.0	4.0	48.0	0.0	.	90
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6958590	6958590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LAMA1	NM_005559	exon55	c.C7850T	p.T2617M	TTTATCGTCCTGC	.	98.0	11.0	116.0	0.0	.	149
LMTK2	22853	ucsc.edu;bcgsc.ca	37	7	97823273	97823273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LMTK2	NM_014916	exon11	c.T3496C	p.S1166P	TGTCTGTCTGCTT	.	29.0	4.0	30.0	0.0	.	1381
LRP1	4035	ucsc.edu;bcgsc.ca	37	12	57588784	57588784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRP1	NM_002332	exon51	c.G8208T	p.E2736D	CTCAGAGGCCCAG	.	44.0	4.0	55.0	0.0	.	596
LRRC31	79782	ucsc.edu;bcgsc.ca	37	3	169565938	169565938	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRRC31	NM_024727	exon8	c.C1297C	p.L433L	CCAGGGAACAGCT	.	37.0	4.0	30.0	0.0	.	93
MAP2K4	6416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	11998923	11998923	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	MAP2K4,NS,carcinoma,0	MAP2K4	NM_003010	exon4	c.425delA	p.Q142fs	AAGAACAAAAACA	.	82.0	13.0	79.0	0.0	.	3134
MAST2	23139	ucsc.edu;bcgsc.ca	37	1	46472011	46472011	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAST2	NM_015112	exon8	c.A846G	p.V282V	GAGCGTACCAGAT	.	47.0	4.0	45.0	0.0	.	581
MCF2L2	23101	ucsc.edu;bcgsc.ca	37	3	183145765	183145765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MCF2L2	NM_015078	exon1	c.A1G	p.M1V	ACAGCATTTCACT	.	48.0	5.0	43.0	0.0	.	293
MERTK	10461	ucsc.edu;bcgsc.ca	37	2	112702624	112702624	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MERTK	NM_006343	exon3	c.C570T	p.Y190Y	CATCTACATCGAA	.	40.0	4.0	30.0	0.0	.	1463
MFSD1	64747	ucsc.edu;bcgsc.ca	37	3	158537505	158537505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MFSD1	NM_022736	exon8	c.G867T	p.E289D	AGCAGAGAGAATC	.	46.0	4.0	46.0	0.0	.	90
MYBPC2	4606	ucsc.edu;bcgsc.ca	37	19	50965201	50965201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MYBPC2	NM_004533	exon26	c.A3136G	p.M1046V	TTCCGGATGGCTC	.	45.0	4.0	63.0	0.0	.	67
NLRP5	126206	ucsc.edu;bcgsc.ca	37	19	56515221	56515221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NLRP5	NM_153447	exon2	c.T202C	p.C68R	CAATGGTGTCTCT	.	40.0	5.0	41.0	0.0	.	162
NOTCH2	4853	ucsc.edu;bcgsc.ca	37	1	120529625	120529625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NOTCH2	NM_001200001	exon5	c.G832T	p.G278W	TGACCCCATCCAC	.	38.0	4.0	29.0	0.0	.	1441
NPTXR	23467	ucsc.edu;bcgsc.ca	37	22	39224465	39224465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NPTXR	NM_014293	exon2	c.C677T	p.A226V	GGCACAGCAGAGA	.	23.0	4.0	24.0	0.0	.	92
NTSR1	4923	ucsc.edu;bcgsc.ca	37	20	61340805	61340805	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NTSR1	NM_002531	exon1	c.G246T	p.T82T	CAACACGGTGACG	.	34.0	4.0	54.0	0.0	.	524
NUCB1	4924	ucsc.edu;bcgsc.ca	37	19	49425171	49425171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NUCB1	NM_006184	exon12	c.A1261G	p.K421E	CAGCTCAAGTTCC	.	56.0	6.0	94.0	0.0	.	90
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135330244	135330244	+	Silent	SNP	T	T	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NUP205	NM_015135	exon41	c.T5712G	p.L1904L	TATTCTTTGGCGC	.	184.0	23.0	125.0	0.0	.	207
NYAP2	57624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	226378354	226378354	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_020864	exon3	c.C489T	p.A163A	TGCAGCCAGTAAG	.	48.0	9.0	41.0	0.0	.	.
OR4A5	81318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	51411592	51411592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR4A5	NM_001005272	exon1	c.G804T	p.M268I	CACAGTCATGAAC	.	87.0	16.0	71.0	0.0	.	92
OR4L1	122742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20528668	20528668	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR4L1	NM_001004717	exon1	c.C465T	p.H155H	TTTACACTCCATA	.	103.0	14.0	53.0	0.0	.	72
OR5L2	26338	ucsc.edu;bcgsc.ca	37	11	55595514	55595514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR5L2	NM_001004739	exon1	c.G820T	p.A274S	AAAGTGGCCACCG	.	50.0	6.0	43.0	0.0	.	69
OTUD6A	139562	ucsc.edu;bcgsc.ca	37	X	69282482	69282482	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OTUD6A	NM_207320	exon1	c.C108A	p.T36T	CAAGACCGACAAG	.	52.0	5.0	61.0	0.0	.	541
P4HA2	8974	ucsc.edu;bcgsc.ca	37	5	131531150	131531150	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	P4HA2	NM_004199	exon13	c.T1395C	p.G465G	GGTGGCACCACCA	.	37.0	4.0	41.0	0.0	.	68
PABPC1	26986	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101718907	101718907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PABPC1	NM_002568	exon11	c.A1574G	p.N525S	TGTGCATTAAGAT	.	134.0	16.0	87.0	0.0	.	68
PADI4	23569	ucsc.edu;bcgsc.ca	37	1	17682885	17682885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PADI4	NM_012387	exon13	c.T1489C	p.C497R	AGGTCCTGCTACA	.	44.0	4.0	46.0	0.0	.	70
PAX8	7849	ucsc.edu;bcgsc.ca	37	2	114004482	114004482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PAX8	NM_013952	exon3	c.A40G	p.N14D	GCTGGTTCAGCCC	.	40.0	4.0	48.0	0.0	.	684
PCIF1	63935	ucsc.edu;bcgsc.ca	37	20	44574480	44574480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PCIF1	NM_022104	exon12	c.G1299T	p.K433N	GTATAAGGGAGAG	.	37.0	4.0	41.0	0.0	.	91
PDSS2	57107	ucsc.edu;bcgsc.ca	37	6	107655522	107655522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PDSS2	NM_020381	exon2	c.A311G	p.D104G	CAGCTGTCATGTA	.	38.0	5.0	23.0	0.0	.	92
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	249211485	249211485	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PGBD2	NM_170725	exon3	c.C702T	p.N234N	TAACAACGAACTT	.	42.0	8.0	37.0	0.0	.	91
PGLS	25796	ucsc.edu;bcgsc.ca	37	19	17627038	17627038	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PGLS	NM_012088	exon2	c.C345A	p.P115P	TAACCCCGAGCTG	.	61.0	5.0	73.0	0.0	.	90
PHF20	51230	broad.mit.edu;bcgsc.ca	37	20	34389481	34389481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PHF20	NM_016436	exon2	c.T37C	p.F13L	ATCAGCTTTGAAG	.	68.0	6.0	40.0	1.0	.	515
PHRF1	57661	ucsc.edu;bcgsc.ca	37	11	611703	611703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PHRF1	NM_020901	exon18	c.A4873G	p.K1625E	GTGGACAAGTACA	.	35.0	4.0	48.0	0.0	.	22
PKD1L1	168507	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	47937789	47937789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PKD1L1	NM_138295	exon14	c.A2067G	p.I689M	CCTCCATATCTAA	.	29.0	4.0	30.0	0.0	.	145
PLA2G4D	283748	ucsc.edu;bcgsc.ca	37	15	42364567	42364567	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLA2G4D	NM_178034	exon14	c.A1341G	p.G447G	TCTCTGTCCTGAC	.	25.0	4.0	29.0	0.0	.	136
PLAU	5328	ucsc.edu;bcgsc.ca	37	10	75672838	75672838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLAU	NM_002658	exon5	c.G350A	p.G117E	GCCTGGGGAAACA	.	42.0	4.0	42.0	1.0	.	118
PLCB3	5331	ucsc.edu;bcgsc.ca	37	11	64031511	64031511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLCB3	NM_000932	exon22	c.T2579C	p.I860T	CCCTGATCAACCC	.	49.0	4.0	62.0	0.0	.	228
PMS1	5378	hgsc.bcm.edu;broad.mit.edu	37	2	190719433	190719433	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PMS1	NM_001128144	exon9	c.1435delG	p.G479fs	GAGAGTGGGGAAA	.	132.0	14.0	88.0	0.0	.	1396
PROM2	150696	ucsc.edu;bcgsc.ca	37	2	95942074	95942074	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PROM2	NM_001165977	exon4	c.C597T	p.G199G	CTGGGGCCTGGTC	.	30.0	4.0	64.0	0.0	.	91
PRR16	51334	ucsc.edu;bcgsc.ca	37	5	120021742	120021742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PRR16	NM_016644	exon3	c.A184G	p.S62G	AGCTCAAGTGGCA	.	29.0	4.0	25.0	0.0	.	71
PTPDC1	138639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	96870207	96870207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PTPDC1	NM_001253829	exon9	c.G2408A	p.G803D	AAGATGGCCCTAA	.	131.0	11.0	78.0	0.0	.	227
PTPRK	5796	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	128326319	128326319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PTPRK	NM_001135648	exon15	c.A2404G	p.M802V	GATCCATTGCATT	.	72.0	7.0	52.0	0.0	.	231
PZP	5858	ucsc.edu;bcgsc.ca	37	12	9333676	9333676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PZP	NM_002864	exon15	c.T1742C	p.L581P	ACTTGCAGGTGGG	.	37.0	5.0	38.0	0.0	.	157
QSER1	79832	ucsc.edu;bcgsc.ca	37	11	32956305	32956305	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	QSER1	NM_001076786	exon4	c.A3114G	p.P1038P	GAACCCAGCTAGG	.	43.0	4.0	39.0	0.0	.	95
RABGGTA	5875	ucsc.edu;bcgsc.ca	37	14	24737766	24737766	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_004581	exon9	c.C960A	p.V320V	CCAAATGACGCGA	.	43.0	4.0	44.0	0.0	.	.
RAD54L2	23132	ucsc.edu;bcgsc.ca	37	3	51696480	51696480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RAD54L2	NM_015106	exon22	c.A3448G	p.R1150G	AACGGCAGACACA	.	44.0	4.0	55.0	0.0	.	93
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	109347859	109347859	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RANBP2	NM_006267	exon4	c.G334T	p.G112X	ACTGATGGAAGAG	.	841.0	110.0	858.0	0.0	.	675
RANBP2	5903	ucsc.edu;bcgsc.ca	37	2	109392308	109392308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RANBP2	NM_006267	exon24	c.T8413C	p.S2805P	ATTAGTTCACCAT	.	45.0	5.0	34.0	1.0	.	675
RBM33	155435	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155457902	155457902	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RBM33	NM_053043	exon2	c.C77G	p.A26G	CTGGCGCGGAACG	.	103.0	20.0	87.0	1.0	.	23
RUNDC1	146923	ucsc.edu;bcgsc.ca	37	17	41143616	41143616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RUNDC1	NM_173079	exon5	c.G1725T	p.M575I	CTACATGGCACAC	.	27.0	4.0	27.0	0.0	.	90
SAYSD1	55776	ucsc.edu;bcgsc.ca	37	6	39082692	39082692	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_018322	exon1	c.C174A	p.P58P	ACTCGCGGGCCTA	.	25.0	4.0	29.0	0.0	.	.
SCAPER	49855	ucsc.edu;bcgsc.ca	37	15	77092703	77092703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCAPER	NM_020843	exon6	c.C497T	p.P166L	GATGTTGGTCTGC	.	70.0	6.0	37.0	0.0	.	137
SCML1	6322	ucsc.edu;bcgsc.ca	37	X	17769993	17769993	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCML1	NM_001037540	exon7	c.C762T	p.H254H	TAAGCACCCTTCA	.	49.0	4.0	44.0	0.0	.	290
SCN3B	55800	ucsc.edu;bcgsc.ca	37	11	123516373	123516373	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCN3B	NM_018400	exon2	c.C141A	p.S47S	CATGCAGGAGATG	.	42.0	5.0	54.0	0.0	.	156
SCUBE3	222663	ucsc.edu;bcgsc.ca	37	6	35201068	35201068	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCUBE3	NM_152753	exon6	c.G702A	p.K234K	CGGGAAGACATGC	.	52.0	4.0	52.0	0.0	.	91
SLC1A3	6507	ucsc.edu;bcgsc.ca	37	5	36684024	36684024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC1A3	NM_004172	exon9	c.A1348G	p.T450A	CTGGTCACTATGG	.	57.0	5.0	62.0	0.0	.	90
SLC9C1	285335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111996688	111996688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_183061	exon5	c.C338T	p.P113L	AAGCCGGGAATTG	.	227.0	28.0	126.0	0.0	.	.
SMYD5	10322	ucsc.edu;bcgsc.ca	37	2	73447311	73447311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SMYD5	NM_006062	exon3	c.A338G	p.H113R	GTCCCCATTGCCA	.	30.0	4.0	39.0	0.0	.	226
SPP1	6696	ucsc.edu;bcgsc.ca	37	4	88901220	88901220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SPP1	NM_001251830	exon5	c.C155A	p.A52D	CAGATGCTGTGGC	.	44.0	4.0	30.0	0.0	.	555
SPTBN1	6711	ucsc.edu;bcgsc.ca	37	2	54885138	54885138	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SPTBN1	NM_003128	exon30	c.A6198G	p.A2066A	GTCTGCAGCAACC	.	42.0	4.0	36.0	0.0	.	140
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	77528691	77528691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ST6GALNAC5	NM_030965	exon5	c.T811C	p.Y271H	TATCATTATTATG	.	117.0	12.0	89.0	0.0	.	92
STRAP	11171	ucsc.edu;bcgsc.ca	37	12	16053885	16053885	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	STRAP	NM_007178	exon9	c.A930G	p.E310E	AGAAGAAGATAGT	.	43.0	4.0	36.0	0.0	.	228
STRN3	29966	ucsc.edu;bcgsc.ca	37	14	31382855	31382855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	STRN3	NM_001083893	exon10	c.A1249G	p.I417V	ACGTTATTGGTTC	.	41.0	4.0	44.0	0.0	.	226
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10775259	10775259	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	STYK1	NM_018423	exon9	c.G945T	p.L315L	ATAGAGCAGGATC	.	132.0	15.0	89.0	0.0	.	1379
TBCCD1	55171	ucsc.edu;bcgsc.ca	37	3	186272531	186272531	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TBCCD1	NM_001134415	exon6	c.A1056G	p.T352T	CTCAATTGTCACA	.	38.0	4.0	38.0	0.0	.	108
THBS1	7057	ucsc.edu;bcgsc.ca	37	15	39880779	39880779	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	THBS1	NM_003246	exon10	c.T1524C	p.C508C	CACCTGTGGAGGA	.	43.0	4.0	31.0	0.0	.	653
TIGIT	201633	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	114018501	114018501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TIGIT	NM_173799	exon3	c.T449C	p.L150P	CGACGCTGGTGGT	.	35.0	7.0	33.0	0.0	.	90
TIMELESS	8914	ucsc.edu;bcgsc.ca	37	12	56814376	56814376	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TIMELESS	NM_003920	exon26	c.G3205C	p.V1069L	GCCGAACCCCTAG	.	83.0	9.0	100.0	0.0	.	159
TLE4	7091	ucsc.edu;bcgsc.ca	37	9	82334962	82334962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TLE4	NM_007005	exon16	c.A1592G	p.N531S	TACAGAACAGGGA	.	43.0	4.0	39.0	0.0	.	524
TM4SF5	9032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4686278	4686278	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TM4SF5	NM_003963	exon4	c.C525T	p.I175I	TGGGATCCAGCTG	.	73.0	20.0	106.0	0.0	.	91
TMEM205	374882	ucsc.edu;bcgsc.ca	37	19	11453629	11453629	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TMEM205	NM_033408	exon4	c.A432G	p.R144R	CTTCTCTCGCAGC	.	61.0	6.0	120.0	0.0	.	22
TMEM243	79161	broad.mit.edu;bcgsc.ca	37	7	86826043	86826043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_024315	exon4	c.C266T	p.P89L	AATTTCGGTTCTA	.	59.0	6.0	28.0	0.0	.	.
TMPPE	643853	ucsc.edu;bcgsc.ca	37	3	33135113	33135113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TMPPE	NM_001039770	exon2	c.C575A	p.T192N	TCCACAGTTTTCA	.	49.0	5.0	45.0	0.0	.	90
TNN	63923	ucsc.edu;bcgsc.ca	37	1	175097282	175097282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TNN	NM_022093	exon14	c.T3160C	p.S1054P	AATGTATCCACCA	.	36.0	4.0	40.0	0.0	.	138
TOPBP1	11073	ucsc.edu;bcgsc.ca	37	3	133331301	133331301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TOPBP1	NM_007027	exon24	c.G3967T	p.A1323S	CAGCTGCCACTGA	.	43.0	4.0	38.0	0.0	.	540
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7577531	7577531	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	TP53,NS,carcinoma,-1	TP53	NM_000546	exon7	c.750delC	p.P250fs	GAGGATGGGCCTC	.	354.0	91.0	108.0	0.0	.	70225
TRIM51	84767	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55657422	55657422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_032681	exon6	c.G766A	p.E256K	AGGTATGAGTCTC	.	234.0	23.0	185.0	1.0	.	.
TRPC6	7225	ucsc.edu;bcgsc.ca	37	11	101353776	101353776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRPC6	NM_004621	exon5	c.C1414A	p.P472T	CATTAGGAAGGAG	.	97.0	10.0	66.0	0.0	.	93
TSPAN18	90139	ucsc.edu;bcgsc.ca	37	11	44939590	44939590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TSPAN18	NM_130783	exon5	c.G326T	p.R109M	TCTTCAGGGAAAA	.	31.0	4.0	24.0	0.0	.	68
TTBK2	146057	ucsc.edu;bcgsc.ca	37	15	43067421	43067421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTBK2	NM_173500	exon13	c.T1910C	p.L637P	AGTTCCAGCCTAT	.	42.0	6.0	45.0	0.0	.	338
TTN	7273	broad.mit.edu;bcgsc.ca	37	2	179416798	179416798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTN	NM_001267550	exon335	c.T90829C	p.S30277P	CACTTGAACACAC	.	116.0	6.0	102.0	0.0	.	636
UCK2	7371	broad.mit.edu;ucsc.edu	37	1	165859537	165859537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	UCK2	NM_012474	exon2	c.C196T	p.R66C	TTCTACCGTGTCC	.	69.0	5.0	77.0	0.0	.	91
UNC79	57578	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94173201	94173201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_020818	exon50	c.A7328G	p.Q2443R	TGGCCCAGGTGGA	.	68.0	7.0	63.0	0.0	.	.
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216538320	216538320	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	USH2A	NM_007123	exon4	c.T759C	p.T253T	TTGCACAGTACCA	.	110.0	18.0	74.0	0.0	.	115
WDR26	80232	broad.mit.edu;bcgsc.ca	37	1	224588723	224588723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	WDR26	NM_025160	exon9	c.A1348G	p.T450A	CACTTGTCAAACT	.	64.0	5.0	59.0	0.0	.	90
XPO6	23214	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28167768	28167768	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	XPO6	NM_015171	exon7	c.A724T	p.S242C	ACTCACTCTCCAC	.	51.0	9.0	53.0	0.0	.	227
YLPM1	56252	broad.mit.edu;bcgsc.ca	37	14	75266169	75266169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	YLPM1	NM_019589	exon5	c.T4169C	p.V1390A	ATTATGTTCCTGA	.	121.0	8.0	115.0	0.0	.	71
ZFPL1	7542	ucsc.edu;bcgsc.ca	37	11	64854053	64854053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZFPL1	NM_006782	exon4	c.G381T	p.W127C	CAACTGGGCCCGG	.	45.0	5.0	85.0	0.0	.	91
ZNF133	7692	ucsc.edu;bcgsc.ca	37	20	18296815	18296815	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF133	NM_001083330	exon4	c.T1317C	p.C439C	TGTTTGTGGGGTG	.	34.0	4.0	54.0	0.0	.	92
ZNF395	55893	ucsc.edu;bcgsc.ca	37	8	28218433	28218433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF395	NM_018660	exon2	c.T209C	p.L70P	TGCTGAAGGCCCG	.	24.0	4.0	33.0	0.0	.	90
ZNF543	125919	ucsc.edu;bcgsc.ca	37	19	57840605	57840605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF543	NM_213598	exon4	c.A1775G	p.N592S	TTTTGAATATCAC	.	30.0	4.0	36.0	0.0	.	92
ZNF549	256051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58048901	58048901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF549	NM_001199295	exon4	c.C529A	p.L177M	ATTCCTCTGTCAG	.	58.0	6.0	47.0	0.0	.	91
ZYX	7791	ucsc.edu;bcgsc.ca	37	7	143087737	143087737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZYX	NM_003461	exon10	c.C1681A	p.L561I	CACGTGCTCTGTC	.	36.0	4.0	36.0	0.0	.	90