Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADCY9	115	ucsc.edu;bcgsc.ca	37	16	4042259	4042259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ADCY9	NM_001116	exon5	c.A2095G	p.K699E	TTCCCTTCTCCTG	.	44.0	4.0	68.0	0.0	.	139
AGRN	375790	ucsc.edu;bcgsc.ca	37	1	979269	979269	+	Missense_Mutation	SNP	G	G	T	rs140789461	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AGRN	NM_198576	exon10	c.G1865T	p.R622L	GTCCCCGGTGTGA	.	43.0	4.0	59.0	0.0	G|1.000;A|0.000	136
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62293785	62293785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	AHNAK,NS,carcinoma,+2	AHNAK	NM_001620	exon5	c.A8104G	p.I2702V	CTTTGATATTCAT	.	212.0	11.0	189.0	0.0	.	109
AKT2	208	ucsc.edu;bcgsc.ca	37	19	40741863	40741863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AKT2	NM_001626	exon11	c.C1109A	p.P370Q	GTGCGCGGGAAGC	.	43.0	5.0	40.0	0.0	.	978
ANKS4B	257629	ucsc.edu;bcgsc.ca	37	16	21261131	21261131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ANKS4B	NM_145865	exon2	c.T244C	p.S82P	TGCGTCTCATTCC	.	35.0	4.0	65.0	0.0	.	92
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101381373	101381373	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ANO4	NM_178826	exon7	c.T554A	p.L185Q	TGAGGCTGGACAA	.	39.0	17.0	47.0	0.0	.	96
ANXA4	307	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70015202	70015202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ANXA4	NM_001153	exon3	c.C26T	p.T9I	GAGGTACTGTCAA	.	47.0	6.0	29.0	0.0	.	90
AP1B1	162	ucsc.edu;bcgsc.ca	37	22	29730278	29730278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AP1B1	NM_001127	exon17	c.T2285C	p.F762S	ATGGCAAAGTCGG	.	27.0	4.0	45.0	0.0	.	92
APAF1	317	ucsc.edu;bcgsc.ca	37	12	99061422	99061422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	APAF1	NM_181868	exon10	c.G1494T	p.K498N	GCACAAGGTAAGA	.	44.0	4.0	41.0	0.0	.	229
APOB	338	broad.mit.edu;bcgsc.ca	37	2	21230939	21230939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	APOB	NM_000384	exon26	c.C8801A	p.P2934H	AATCTGGGGCAGG	.	203.0	9.0	158.0	1.0	.	175
ARG1	383	ucsc.edu;bcgsc.ca	37	6	131902378	131902378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARG1	NM_001244438	exon4	c.T349C	p.S117P	AGCATCTCTGGCC	.	36.0	4.0	37.0	0.0	.	91
ARHGAP32	9743	ucsc.edu;bcgsc.ca	37	11	129034323	129034323	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARHGAP32	NM_001142685	exon3	c.117-1G>T	.	ATCTTCCTAGAGA	.	44.0	4.0	28.0	0.0	.	231
ARHGEF40	55701	ucsc.edu;bcgsc.ca	37	14	21550156	21550156	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARHGEF40	NM_018071	exon14	c.C3129T	p.T1043T	GGTCACCAGCACT	.	42.0	4.0	32.0	0.0	.	228
ASXL1	171023	broad.mit.edu;bcgsc.ca	37	20	31022742	31022752	+	Frame_Shift_Del	DEL	CTAGGAGATGC	CTAGGAGATGC	-	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	CTAGGAGATGC	CTAGGAGATGC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ASXL1	NM_015338	exon12	c.2227_2237del	p.743_746del	GATGGGCTAGGAG	.	84.0	7.0	76.0	0.0	.	2057
ATP13A3	79572	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	194168612	194168612	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATP13A3	NM_024524	exon12	c.T1277G	p.I426S	GTGTAGATAAACC	.	194.0	12.0	142.0	0.0	.	69
ATP8B1	5205	ucsc.edu;bcgsc.ca	37	18	55329818	55329818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATP8B1	NM_005603	exon21	c.A2315G	p.Q772R	TTCCTCTGGTTTT	.	41.0	4.0	28.0	0.0	.	587
AXIN2	8313	broad.mit.edu;bcgsc.ca	37	17	63526129	63526129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AXIN2	NM_004655	exon11	c.G2497T	p.G833C	TCCGGCCTTCATA	.	57.0	5.0	62.0	0.0	.	658
AXL	558	ucsc.edu;bcgsc.ca	37	19	41726725	41726725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AXL	NM_021913	exon2	c.G270T	p.E90D	GGGTGAGGATGAA	.	44.0	4.0	32.0	0.0	.	1403
B4GALNT3	283358	ucsc.edu;bcgsc.ca	37	12	645454	645454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	B4GALNT3	NM_173593	exon3	c.T344C	p.L115P	CCTGGCTCTCAGA	.	56.0	5.0	44.0	0.0	.	92
BAZ1A	11177	ucsc.edu;bcgsc.ca	37	14	35227971	35227971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BAZ1A	NM_013448	exon25	c.T4325C	p.V1442A	TCTACAACAAGTT	.	50.0	4.0	34.0	0.0	.	291
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56993854	56993854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BAZ2A	NM_013449	exon25	c.G4925T	p.R1642L	CAGACACGAATGC	.	73.0	29.0	90.0	0.0	.	22
BMS1	9790	ucsc.edu;bcgsc.ca	37	10	43279928	43279928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BMS1	NM_014753	exon2	c.T86C	p.L29P	AGGATCTCCAGCT	.	60.0	5.0	54.0	0.0	.	93
BOC	91653	ucsc.edu;bcgsc.ca	37	3	112998756	112998756	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BOC	NM_033254	exon13	c.G2106T	p.S702S	GGTGTCGGGCTAC	.	38.0	4.0	38.0	0.0	.	157
BRDT	676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92433718	92433718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BRDT	NM_001242806	exon4	c.G346T	p.V116F	GACATTGTTCTTA	.	50.0	16.0	58.0	0.0	.	374
BTNL3	10917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180432823	180432823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_197975	exon8	c.A1352C	p.D451A	TGTATGACGAGGA	.	126.0	30.0	97.0	0.0	.	.
C10orf76	79591	ucsc.edu;bcgsc.ca	37	10	103789456	103789456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C10orf76	NM_024541	exon5	c.C353T	p.T118I	CCAGAGGTAGACT	.	32.0	4.0	37.0	0.0	.	90
C11orf57	55216	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111953659	111953659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C11orf57	NM_001082969	exon6	c.C845T	p.T282I	TAGCTACAGATGA	.	49.0	14.0	41.0	0.0	.	155
C21orf128	150147	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43523889	43523889	+	RNA	SNP	C	C	T	rs138845188	by1000genomes	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	ATGGCTCCAAGCA	.	105.0	10.0	91.0	0.0	C|0.999;T|0.000	.
C6orf211	79624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151790078	151790078	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C6orf211	NM_024573	exon5	c.C1159G	p.Q387E	TTTCATCAGGCTC	.	70.0	7.0	83.0	0.0	.	90
CCDC13	152206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	42754745	42754745	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCDC13	NM_144719	exon14	c.C1782T	p.R594R	CACGGTGCGGTGT	.	38.0	8.0	44.0	0.0	.	91
CCDC136	64753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128449544	128449544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCDC136	NM_022742	exon11	c.A1646T	p.K549M	AGGAAAAGTACAA	.	221.0	61.0	248.0	0.0	.	24
CCP110	9738	ucsc.edu;bcgsc.ca	37	16	19547850	19547850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCP110	NM_001199022	exon4	c.T859C	p.S287P	TGTGTCTCAGTTA	.	41.0	5.0	61.0	0.0	.	90
CD163L1	283316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7522105	7522105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CD163L1	NM_174941	exon15	c.T3887C	p.L1296P	TCCCTCAGGGCAG	.	27.0	7.0	35.0	0.0	.	100
CDK14	5218	ucsc.edu;bcgsc.ca	37	7	90741982	90741982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CDK14	NM_012395	exon12	c.G1226T	p.W409L	GGCTATGGGAACT	.	42.0	4.0	32.0	0.0	.	970
CDK5RAP2	55755	ucsc.edu;bcgsc.ca	37	9	123308036	123308036	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CDK5RAP2	NM_018249	exon5	c.G339T	p.L113L	CCGCTTCAGACTT	.	45.0	5.0	33.0	0.0	.	229
CDSN	1041	ucsc.edu;bcgsc.ca	37	6	31084904	31084904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CDSN	NM_001264	exon2	c.T488C	p.F163S	CTGCTGAACTGAA	.	34.0	6.0	20.0	0.0	.	92
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37455644	37455644	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CEBPZ	NM_005760	exon2	c.C692G	p.S231C	GTAGAAGAGGCTC	.	122.0	30.0	82.0	0.0	.	91
CENPJ	55835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	25466801	25466801	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CENPJ	NM_018451	exon10	c.G3196T	p.E1066X	TCTTCTCCACCTC	.	176.0	45.0	117.0	0.0	.	92
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179989459	179989459	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CEP350	NM_014810	exon12	c.C2550T	p.S850S	GGCCAGCATTAAC	.	81.0	19.0	49.0	0.0	.	26
CES3	23491	ucsc.edu;bcgsc.ca	37	16	66998383	66998383	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CES3	NM_024922	exon5	c.A684G	p.G228G	TGGTGGATCTGCC	.	38.0	4.0	64.0	0.0	.	517
CHRD	8646	ucsc.edu;bcgsc.ca	37	3	184101103	184101103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CHRD	NM_003741	exon11	c.T1217C	p.L406P	TAGTCCTGCAAAG	.	38.0	4.0	31.0	0.0	.	93
CHUK	1147	ucsc.edu;bcgsc.ca	37	10	101982676	101982676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CHUK	NM_001278	exon3	c.C262A	p.H88N	CATCATGAATCAA	.	31.0	4.0	45.0	0.0	.	961
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37678951	37678951	+	Missense_Mutation	SNP	C	C	T	rs201851808		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CSNK1A1L	NM_145203	exon1	c.G443A	p.R148H	CAGTGACGCCCAG	.	260.0	88.0	208.0	0.0	C|0.999;T|0.000	396
DIP2A	23181	ucsc.edu;bcgsc.ca	37	21	47978170	47978170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DIP2A	NM_015151	exon32	c.G3833T	p.C1278F	GCACGTGCATGGT	.	39.0	4.0	45.0	0.0	.	24
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11339690	11339690	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DOCK6	NM_020812	exon23	c.C2740T	p.L914L	ACTGCAGAGCCAG	.	37.0	15.0	51.0	0.0	.	93
DPH5	51611	ucsc.edu;bcgsc.ca	37	1	101490900	101490900	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DPH5	NM_001077395	exon2	c.T100A	p.Y34N	AGGTGTAGGCTTC	.	34.0	4.0	36.0	0.0	.	90
DYDC1	143241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	82098869	82098869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DYDC1	NM_001269053	exon5	c.A383G	p.D128G	AGAATATCTTCAT	.	288.0	28.0	151.0	0.0	.	68
ECH1	1891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39322023	39322023	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ECH1	NM_001398	exon2	c.T186C	p.S62S	CTGCGCAGACGTC	.	33.0	12.0	27.0	0.0	.	91
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38407124	38407124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EGFLAM	NM_001205301	exon8	c.G1023T	p.R341S	GTCAAGGCTCTTT	.	118.0	30.0	90.0	0.0	.	187
EIF4H	7458	broad.mit.edu;bcgsc.ca	37	7	73602087	73602087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EIF4H	NM_022170	exon2	c.G206T	p.S69I	TAAGGAGTGTACG	.	78.0	6.0	56.0	0.0	.	90
ERP29	10961	ucsc.edu;bcgsc.ca	37	12	112460309	112460309	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ERP29	NM_006817	exon3	c.G639T	p.G213G	CCAAGGGGAGGAC	.	36.0	4.0	41.0	0.0	.	90
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	74019605	74019605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EVPL	NM_001988	exon3	c.C329A	p.P110Q	GCCTGCGGGTGCT	.	68.0	23.0	65.0	0.0	.	93
FAM124B	79843	broad.mit.edu;bcgsc.ca	37	2	225244374	225244374	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FAM124B	NM_001122779	exon2	c.C1284T	p.T428T	CTTCCTGGTACCA	.	103.0	6.0	71.0	0.0	.	92
FAM13B	51306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137284796	137284796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001101800	exon17	c.G1942A	p.G648S	AAGAGCCAAAGCT	.	180.0	19.0	150.0	0.0	.	.
FAM160B2	64760	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21959694	21959694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_022749	exon15	c.C1860A	p.S620R	ATACAGCCTGAAC	.	29.0	9.0	47.0	0.0	.	.
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92531317	92531317	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FAT3	NM_001008781	exon9	c.T5138A	p.I1713N	ATGGGATCTTTAC	.	149.0	56.0	104.0	0.0	.	73
FBXW5	54461	ucsc.edu;bcgsc.ca	37	9	139837928	139837928	+	Missense_Mutation	SNP	C	C	T	rs141420875		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FBXW5	NM_018998	exon3	c.G224A	p.R75Q	TACAGCCGCTGGA	.	48.0	4.0	60.0	1.0	C|1.000;T|0.000	226
FCAMR	83953	broad.mit.edu;bcgsc.ca	37	1	207134362	207134362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FCAMR	NM_001170631	exon6	c.A859G	p.T287A	GCCTGGTTGCTCC	.	143.0	8.0	101.0	0.0	.	91
FCRL3	115352	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	157667132	157667132	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FCRL3	NM_052939	exon6	c.G642A	p.Q214Q	AGAGAGCTGGGTC	.	91.0	8.0	65.0	0.0	.	156
GATA6	2627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	19780725	19780725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GATA6	NM_005257	exon7	c.C1727T	p.S576L	TCGCCTCGCCGGC	.	45.0	12.0	41.0	0.0	.	514
GDE1	51573	ucsc.edu;bcgsc.ca	37	16	19533181	19533181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GDE1	NM_016641	exon1	c.G106A	p.G36S	GGCTGCCGGTGAG	.	32.0	4.0	39.0	0.0	.	70
GFPT1	2673	ucsc.edu;bcgsc.ca	37	2	69581700	69581700	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GFPT1	NM_001244710	exon8	c.G606A	p.R202R	ACCTCGCCTGTAA	.	44.0	4.0	33.0	0.0	.	91
GH2	2689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61957832	61957832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GH2	NM_002059	exon5	c.C503A	p.S168Y	CTGTAGGACTGAT	.	241.0	48.0	216.0	0.0	.	93
GLUD2	2747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	120182439	120182439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GLUD2	NM_012084	exon1	c.G901A	p.D301N	TTTAGAGATAAAA	.	379.0	96.0	298.0	0.0	.	131
GPI	2821	ucsc.edu;bcgsc.ca	37	19	34857692	34857692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPI	NM_001184722	exon4	c.A335G	p.K112R	AGGCCAAGTCCAG	.	39.0	4.0	31.0	0.0	.	228
GPR161	23432	broad.mit.edu;bcgsc.ca	37	1	168054960	168054960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPR161	NM_001267609	exon7	c.G1459T	p.A487S	CTTTGGCCAAGCT	.	128.0	9.0	49.0	0.0	.	90
GPR63	81491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97247241	97247241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPR63	NM_030784	exon2	c.C367A	p.L123I	AAGCTAGGCTGGC	.	55.0	13.0	45.0	0.0	.	92
GRB7	2886	ucsc.edu;bcgsc.ca	37	17	37902252	37902252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GRB7	NM_001242442	exon13	c.G1426T	p.G476C	GTAGACGGGTAAG	.	38.0	4.0	44.0	0.0	.	848
GUCY1B2	2974	broad.mit.edu;ucsc.edu;mdanderson.org	37	13	51591120	51591120	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	TCACTATTTGTAT	.	92.0	13.0	104.0	2.0	.	.
HDAC10	83933	ucsc.edu;bcgsc.ca	37	22	50687294	50687294	+	Missense_Mutation	SNP	G	G	A	rs199648733		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HDAC10	NM_032019	exon9	c.C782T	p.S261L	CCTGCCGAGACCA	.	36.0	4.0	33.0	0.0	G|0.999;A|0.000	226
HELZ2	85441	ucsc.edu;bcgsc.ca	37	20	62199797	62199797	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001037335	exon6	c.C1644T	p.T548T	CTTGCCGGTGCCA	.	51.0	4.0	49.0	0.0	.	.
HSPG2	3339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22173039	22173039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HSPG2	NM_005529	exon63	c.G8218A	p.E2740K	CCCCTTCGGCCAC	.	70.0	8.0	88.0	0.0	.	141
HYDIN	54768	ucsc.edu;bcgsc.ca	37	16	70884538	70884538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HYDIN	NM_001270974	exon74	c.T12464C	p.F4155S	GGTGTGAAGAAAA	.	41.0	4.0	43.0	0.0	.	92
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27460454	27460454	+	Silent	SNP	G	G	T	rs56002407	byfrequency;alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IL21R	NM_181079	exon10	c.G1533T	p.T511T	GGACACGTTTGAC	.	22.0	11.0	48.0	0.0	G|0.999;A|0.001	660
IRGQ	126298	ucsc.edu;bcgsc.ca	37	19	44097315	44097315	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IRGQ	NM_001007561	exon3	c.G735A	p.L245L	AGGATCCAATCCA	.	24.0	4.0	51.0	0.0	.	92
ITGA1	3672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	52233253	52233253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	ITGA1,NS,carcinoma,+1	ITGA1	NM_181501	exon24	c.C2987T	p.P996L	CTTTTCCAATGCC	.	197.0	73.0	143.0	0.0	.	228
KATNA1	11104	ucsc.edu;bcgsc.ca	37	6	149922743	149922743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KATNA1	NM_007044	exon7	c.T875C	p.L292P	AACAGAAGACGAA	.	37.0	4.0	56.0	0.0	.	91
KCNF1	3754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	11053487	11053487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KCNF1	NM_002236	exon1	c.C935T	p.T312I	TGCAGACCCTCAC	.	68.0	19.0	60.0	0.0	.	91
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6793123	6793123	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KDM4C	NM_001146696	exon2	c.T201C	p.G67G	TGCGGGTCTTGCA	.	74.0	27.0	37.0	0.0	.	228
KDSR	2531	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61018193	61018193	+	Silent	SNP	T	T	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KDSR	NM_002035	exon6	c.A537C	p.G179G	GAATAATCCCAAC	.	54.0	8.0	57.0	0.0	.	227
KIAA1432	57589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5742973	5742973	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIAA1432	NM_001206557	exon9	c.T1006G	p.F336V	AGTGTTTTTGGAG	.	328.0	115.0	253.0	0.0	.	90
KIAA1468	57614	broad.mit.edu;bcgsc.ca	37	18	59942653	59942653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIAA1468	NM_020854	exon22	c.G2914A	p.G972S	TGGTATGGTGTTG	.	124.0	14.0	114.0	0.0	.	158
KLHL34	257240	ucsc.edu;bcgsc.ca	37	X	21675562	21675562	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KLHL34	NM_153270	exon1	c.G345A	p.L115L	GAGCCCCAGGGCC	.	40.0	4.0	41.0	0.0	.	131
LETMD1	25875	ucsc.edu;bcgsc.ca	37	12	51449625	51449625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LETMD1	NM_001243689	exon5	c.T520C	p.F174L	TACCTGTTTCCCA	.	52.0	5.0	54.0	0.0	.	90
LIPI	149998	ucsc.edu;bcgsc.ca	37	21	15579152	15579152	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LIPI	NM_198996	exon1	c.T93C	p.V31V	GCACACAACTAGA	.	33.0	6.0	21.0	0.0	.	70
LRFN1	57622	ucsc.edu;bcgsc.ca	37	19	39804874	39804874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LRFN1	NM_020862	exon1	c.T1103C	p.F368S	CAAGTGAAGGTGC	.	21.0	4.0	34.0	0.0	.	70
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356583	42356583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LRFN5	NM_152447	exon3	c.G755A	p.R252K	GGTTGAGGCGTCT	.	84.0	9.0	65.0	0.0	.	97
LRRC6	23639	ucsc.edu;bcgsc.ca	37	8	133673830	133673830	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LRRC6	NM_012472	exon2	c.T54C	p.C18C	AATGACACAGTCG	.	47.0	5.0	29.0	0.0	.	92
LSG1	55341	ucsc.edu;bcgsc.ca	37	3	194380824	194380824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LSG1	NM_018385	exon6	c.T560C	p.L187P	AACAGGAGTGGGT	.	54.0	5.0	49.0	0.0	.	90
LY75	4065	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160737645	160737645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LY75	NM_002349	exon8	c.G1353T	p.E451D	ATTTGGCTCATTC	.	120.0	50.0	83.0	1.0	.	90
LY75	4065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160737646	160737646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LY75	NM_002349	exon8	c.A1352T	p.E451V	TTTGGCTCATTCT	.	119.0	49.0	83.0	0.0	.	90
MAD1L1	8379	ucsc.edu;bcgsc.ca	37	7	2041757	2041757	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAD1L1	NM_003550	exon15	c.1360-1G>A	.	CTGAGCCTGCAAG	.	37.0	4.0	29.0	0.0	.	1083
MAN1A1	4121	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	119511012	119511012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAN1A1	NM_005907	exon10	c.G1363A	p.G455R	TTAGTCCGCTGCT	.	49.0	13.0	76.0	1.0	.	517
MAN1A2	10905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118035855	118035855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAN1A2	NM_006699	exon9	c.G1255T	p.A419S	CATGAGGCAAGAA	.	74.0	24.0	91.0	0.0	.	90
MIR425	494337	ucsc.edu;mdanderson.org	37	3	49057609	49057609	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	ACATTCCCGATGG	.	39.0	9.0	38.0	0.0	.	.
MLXIP	22877	ucsc.edu;bcgsc.ca	37	12	122622025	122622025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MLXIP	NM_014938	exon12	c.G2042T	p.C681F	GGGACTGCCCAAA	.	42.0	4.0	40.0	0.0	.	92
MORC3	23515	broad.mit.edu;bcgsc.ca	37	21	37741557	37741557	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MORC3	NM_015358	exon15	c.C1891A	p.R631R	TCATCCCGATGCG	.	157.0	7.0	132.0	1.0	.	92
MTMR7	9108	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17198903	17198903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MTMR7	NM_004686	exon6	c.A701G	p.D234G	ACGAAGTCACTTC	.	34.0	12.0	42.0	0.0	.	91
NCAM1	4684	broad.mit.edu;bcgsc.ca	37	11	113130930	113130930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NCAM1	NM_001242607	exon18	c.G2094T	p.K698N	GCTGAAGTCCCTG	.	92.0	7.0	74.0	0.0	.	23
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	124821719	124821753	+	Frame_Shift_Del	DEL	AGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC	AGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC	-	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	AGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC	AGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NCOR2	NM_006312	exon40	c.5688_5695del	p.1896_1899del	AGGTGGAGGTGGA	.	134.0	16.0	303.0	0.0	.	229
NEK11	79858	broad.mit.edu;bcgsc.ca	37	3	130828741	130828741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NEK11	NM_024800	exon5	c.T431C	p.L144P	TGCTGCTGGGAGT	.	252.0	19.0	163.0	0.0	.	848
NOTCH2	4853	ucsc.edu;bcgsc.ca	37	1	120512321	120512321	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NOTCH2	NM_001200001	exon6	c.T921C	p.N307N	ACAGGCATTGGGC	.	63.0	6.0	95.0	0.0	.	1441
NXF1	10482	ucsc.edu;bcgsc.ca	37	11	62571039	62571039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NXF1	NM_006362	exon3	c.C221A	p.P74H	GTATAGGGGTTGC	.	42.0	4.0	37.0	0.0	.	228
OBSCN	84033	ucsc.edu;bcgsc.ca	37	1	228525715	228525715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OBSCN	NM_001271223	exon78	c.G19742T	p.R6581L	CGCTGCGGGAAGG	.	53.0	5.0	32.0	0.0	.	403
OR2G2	81470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247751732	247751732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR2G2	NM_001001915	exon1	c.C71T	p.P24L	ATTATCCTCAGTT	.	372.0	89.0	285.0	0.0	.	68
OR8D1	283159	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124180637	124180637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR8D1	NM_001002917	exon1	c.C26A	p.A9E	TGAGCTGCCATAG	.	31.0	7.0	29.0	0.0	.	71
OSGEPL1	64172	ucsc.edu;bcgsc.ca	37	2	190618641	190618641	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_022353	exon6	c.963+1G>T	.	AACTTACCAGTAC	.	42.0	5.0	36.0	0.0	.	.
PAFAH2	5051	ucsc.edu;bcgsc.ca	37	1	26317250	26317250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PAFAH2	NM_000437	exon2	c.T58C	p.C20R	CCCCACAGCCTAC	.	32.0	4.0	32.0	0.0	.	70
PCDH12	51294	ucsc.edu;bcgsc.ca	37	5	141335557	141335557	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCDH12	NM_016580	exon1	c.C1860T	p.T620T	CACAATGGTTGTC	.	43.0	4.0	36.0	0.0	.	93
PCDH8	5100	ucsc.edu;bcgsc.ca	37	13	53422154	53422154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCDH8	NM_032949	exon1	c.A418G	p.I140V	CCGGGATCTGGGC	.	43.0	4.0	58.0	0.0	.	153
PCSK6	5046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	101929687	101929687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCSK6	.	.	.	.	GCCAAGGCGATGA	.	59.0	11.0	41.0	0.0	.	46
PDGFB	5155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	39621841	39621841	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PDGFB	NM_002608	exon6	c.C613T	p.Q205X	GAGTTTGGGGCGT	.	81.0	13.0	69.0	0.0	.	1270
PDYN	5173	ucsc.edu;bcgsc.ca	37	20	1963617	1963617	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PDYN	NM_001190898	exon3	c.A114G	p.K38K	GATAGGTTTGGGA	.	38.0	4.0	30.0	0.0	.	92
PGBD1	84547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28268801	28268801	+	Missense_Mutation	SNP	G	G	C	rs143874020		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PGBD1	NM_001184743	exon7	c.G1170C	p.W390C	GAGTTGGACCAAA	.	60.0	24.0	44.0	0.0	G|1.000;C|0.000	94
PITRM1	10531	ucsc.edu;bcgsc.ca	37	10	3186531	3186531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PITRM1	NM_001242307	exon22	c.G2488T	p.D830Y	GGGCATCTCCACC	.	34.0	4.0	34.0	0.0	.	91
PKHD1L1	93035	broad.mit.edu;bcgsc.ca	37	8	110495217	110495217	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PKHD1L1	NM_177531	exon57	c.G9459A	p.G3153G	TTTAGGGGTGTTT	.	282.0	13.0	219.0	0.0	.	145
PLCB3	5331	ucsc.edu;bcgsc.ca	37	11	64031579	64031579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLCB3	NM_000932	exon22	c.A2647G	p.S883G	GGGGAGAGTGAGG	.	50.0	5.0	37.0	0.0	.	228
PLD2	5338	ucsc.edu;bcgsc.ca	37	17	4714131	4714131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLD2	NM_001243108	exon10	c.G895T	p.A299S	CGGCAGGCACGGT	.	39.0	4.0	47.0	0.0	.	291
PLXNC1	10154	ucsc.edu;bcgsc.ca	37	12	94613937	94613937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLXNC1	NM_005761	exon6	c.A1700G	p.K567R	CCTACAAAGGTAT	.	42.0	4.0	45.0	0.0	.	92
PPAT	5471	broad.mit.edu;bcgsc.ca	37	4	57273817	57273817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PPAT	NM_002703	exon2	c.A194G	p.K65R	TTTACCTTGTGTG	.	71.0	6.0	58.0	0.0	.	90
PPP2R3A	5523	ucsc.edu;bcgsc.ca	37	3	135745924	135745924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PPP2R3A	NM_002718	exon3	c.T2246C	p.M749T	ATGAAATGGGGAA	.	30.0	4.0	28.0	0.0	.	662
PPP6R3	55291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68338555	68338555	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PPP6R3	NM_001164162	exon12	c.A1326C	p.E442D	CTGGGAAATGAAT	.	87.0	19.0	61.0	0.0	.	91
PRDM2	7799	ucsc.edu;bcgsc.ca	37	1	14113012	14113012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRDM2	NM_015866	exon9	c.A5039G	p.N1680S	CTAGGAACTTCCT	.	42.0	4.0	47.0	0.0	.	116
PRMT7	54496	ucsc.edu;bcgsc.ca	37	16	68373424	68373424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRMT7	NM_019023	exon8	c.C704A	p.P235Q	TGTCACCAGCCGA	.	19.0	4.0	29.0	0.0	.	90
PRUNE2	158471	broad.mit.edu;bcgsc.ca	37	9	79325022	79325022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRUNE2	NM_015225	exon8	c.C2168A	p.P723H	AGTTCAGGCTGAC	.	121.0	10.0	115.0	0.0	.	157
PSG8	440533	ucsc.edu;bcgsc.ca	37	19	43262154	43262154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PSG8	NM_001130167	exon3	c.C709A	p.P237T	ACTCACGGAGGAG	.	37.0	5.0	42.0	0.0	.	90
PSME2	5721	ucsc.edu;bcgsc.ca	37	14	24615416	24615416	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PSME2	NM_002818	exon3	c.81+1G>T	.	GACTTACCTCCTG	.	42.0	4.0	54.0	0.0	.	90
PTPRQ	374462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81004359	81004359	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001145026	exon25	c.G4357C	p.E1453Q	TATGTAGAAGGGA	.	85.0	16.0	57.0	0.0	.	.
QPCTL	54814	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46202122	46202122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	QPCTL	NM_017659	exon5	c.C850T	p.R284C	TTCCCTCGCACGG	.	33.0	8.0	40.0	0.0	.	91
RAD51	5888	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40993273	40993273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RAD51	NM_001164270	exon3	c.A99G	p.I33M	TGGCATAAATGCC	.	51.0	6.0	62.0	0.0	.	563
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48953728	48953728	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RB1	NM_000321	exon14	c.1333-2A>G	.	GTTTGTAGCGATA	.	143.0	48.0	109.0	0.0	.	3784
RGS11	8786	ucsc.edu;bcgsc.ca	37	16	321559	321559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RGS11	NM_183337	exon10	c.G667T	p.A223S	AATCTGCACTCTT	.	39.0	4.0	47.0	0.0	.	227
RHPN1	114822	ucsc.edu;bcgsc.ca	37	8	144459602	144459602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RHPN1	NM_052924	exon4	c.C358A	p.L120M	AAGGAGCTGGACT	.	45.0	4.0	33.0	0.0	.	67
RNF20	56254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104315030	104315030	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RNF20	NM_019592	exon13	c.A1896T	p.E632D	GATTGAACTCAAG	.	222.0	56.0	180.0	0.0	.	231
RPS3	6188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75110602	75110602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RPS3	NM_001256802	exon1	c.A11G	p.Q4R	CAGTGCAAATATC	.	113.0	31.0	110.0	0.0	.	90
RSAD2	91543	ucsc.edu;bcgsc.ca	37	2	7033836	7033836	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RSAD2	NM_080657	exon5	c.921+2T>C	.	AATATGTGAGTAT	.	63.0	6.0	39.0	0.0	.	90
SCARA3	51435	ucsc.edu;bcgsc.ca	37	8	27516828	27516828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SCARA3	NM_182826	exon5	c.G1141C	p.V381L	GATGACGTGCGGC	.	31.0	4.0	54.0	0.0	.	228
SCN3B	55800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123513234	123513234	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SCN3B	NM_018400	exon3	c.T365A	p.V122E	CGGGACACATTGC	.	71.0	18.0	54.0	0.0	.	156
SEC23A	10484	ucsc.edu;bcgsc.ca	37	14	39555106	39555106	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SEC23A	NM_006364	exon7	c.T688C	p.L230L	GTTGTAAGAATCT	.	38.0	4.0	35.0	0.0	.	95
SELL	6402	broad.mit.edu;bcgsc.ca	37	1	169672458	169672458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SELL	NM_000655	exon6	c.G929T	p.G310V	TTCTTCCCAATTA	.	225.0	14.0	105.0	0.0	.	90
SERPINF1	5176	ucsc.edu;bcgsc.ca	37	17	1675351	1675351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SERPINF1	NM_002615	exon5	c.G625T	p.G209C	CTTCTCGGTGTGG	.	33.0	4.0	25.0	0.0	.	227
SFRP4	6424	broad.mit.edu;bcgsc.ca	37	7	37955917	37955917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SFRP4	NM_003014	exon1	c.T223C	p.F75L	GGAAGAAGCGCAG	.	76.0	6.0	82.0	0.0	.	658
SIGLEC8	27181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51957481	51957481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SIGLEC8	NM_014442	exon6	c.G1237T	p.A413S	GAGAGGCCGAGCC	.	40.0	16.0	45.0	0.0	.	94
SLC18A1	6570	ucsc.edu;bcgsc.ca	37	8	20036702	20036702	+	Missense_Mutation	SNP	C	C	A	rs17215808	byfrequency;alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC18A1	NM_001142324	exon4	c.G418T	p.G140W	GAACCCCGACCCG	.	36.0	4.0	65.0	0.0	C|0.998;T|0.002	92
SLC38A7	55238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58706093	58706093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC38A7	NM_018231	exon9	c.C938A	p.S313Y	GGATAGGACAGGA	.	52.0	26.0	80.0	0.0	.	69
SLC41A3	54946	broad.mit.edu;bcgsc.ca	37	3	125786988	125786988	+	Silent	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC41A3	NM_001008486	exon2	c.C75G	p.P25P	GCTGAGGGGGTGA	.	49.0	5.0	30.0	0.0	.	90
SNCAIP	9627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121767681	121767681	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SNCAIP	NM_005460	exon6	c.C1200T	p.C400C	GGAGTGCGTACGC	.	151.0	37.0	108.0	0.0	.	92
SNRPB	6628	ucsc.edu;bcgsc.ca	37	20	2443362	2443362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SNRPB	NM_003091	exon6	c.C605A	p.P202Q	CCCATTGGGGGAC	.	41.0	4.0	40.0	0.0	.	227
SPATA20	64847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48629417	48629417	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SPATA20	NM_022827	exon14	c.G1833A	p.A611A	GAGTGCGTGGCTC	.	121.0	20.0	108.0	0.0	.	90
SRCAP	10847	ucsc.edu;bcgsc.ca	37	16	30750595	30750595	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SRCAP	NM_006662	exon34	c.A9234G	p.G3078G	GCGAGGACGGAAG	.	45.0	5.0	52.0	1.0	.	94
SREK1	140890	ucsc.edu;bcgsc.ca	37	5	65440291	65440291	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SREK1	NM_001270493	exon1	c.G87T	p.A29A	GTCGGCGGTGACC	.	32.0	5.0	31.0	0.0	.	91
SYCE1L	100130958	ucsc.edu;bcgsc.ca	37	16	77242387	77242387	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001129979	exon4	c.G207T	p.L69L	GGAACTGAGAGAG	.	47.0	4.0	56.0	0.0	.	.
SYCP1	6847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115401205	115401205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SYCP1	NM_003176	exon6	c.A329G	p.Y110C	AACTGTATAAGGA	.	204.0	88.0	204.0	0.0	.	91
TAX1BP1	8887	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27831697	27831697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TAX1BP1	NM_006024	exon9	c.G1111A	p.V371I	GAAGTTGTCTTTC	.	130.0	10.0	88.0	0.0	.	153
THBS1	7057	ucsc.edu;bcgsc.ca	37	15	39876571	39876571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	THBS1	NM_003246	exon6	c.A974T	p.Y325F	TTCAGTACAGAAA	.	42.0	4.0	57.0	0.0	.	653
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11485864	11485864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	THSD7A	NM_015204	exon13	c.C2888A	p.A963E	GGTTGTGCATTAT	.	142.0	54.0	110.0	0.0	.	71
TLR8	51311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12937428	12937428	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TLR8	NM_138636	exon2	c.C269G	p.T90S	ATCTCACTAAAAT	.	144.0	49.0	112.0	0.0	.	629
TMEM106A	113277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41368750	41368750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_145041	exon7	c.A605C	p.E202A	GGGATGAAAACAC	.	151.0	19.0	104.0	0.0	.	.
TMEM55B	90809	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20926842	20926842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TMEM55B	NM_001100814	exon7	c.C731T	p.A244V	CGCCGTGCATGCT	.	43.0	16.0	44.0	0.0	.	90
TNFRSF6B	8771	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62329759	62329759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TNFRSF6B	NM_003823	exon3	c.G746A	p.G249D	GGGCGGGCCGCGC	.	32.0	12.0	41.0	2.0	.	651
TNKS2	80351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93609319	93609319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TNKS2	NM_025235	exon20	c.G2662A	p.E888K	GGACTTGAGCACC	.	147.0	47.0	122.0	0.0	.	541
TRPM7	54822	ucsc.edu;bcgsc.ca	37	15	50978728	50978728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TRPM7	NM_017672	exon1	c.G3T	p.M1I	CAGTACCATTCTC	.	47.0	4.0	53.0	0.0	.	392
TRPV2	51393	ucsc.edu;bcgsc.ca	37	17	16335314	16335314	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TRPV2	NM_016113	exon12	c.C1689A	p.P563P	GCGCCCCGAAGCT	.	36.0	4.0	64.0	0.0	.	91
TSHR	7253	ucsc.edu;bcgsc.ca	37	14	81609800	81609800	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TSHR	NM_000369	exon10	c.C1398T	p.Y466Y	GATGTACCTGCTC	.	39.0	4.0	50.0	0.0	.	1650
TTN	7273	broad.mit.edu;bcgsc.ca	37	2	179419651	179419651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TTN	NM_001267550	exon331	c.A88535G	p.E29512G	TTTAATTCATAGC	.	85.0	5.0	64.0	0.0	.	636
TYK2	7297	ucsc.edu;bcgsc.ca	37	19	10476467	10476467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TYK2	NM_003331	exon7	c.A737G	p.Q246R	CCCGGCTGGAAGT	.	51.0	4.0	55.0	1.0	.	1009
UBE2J1	51465	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	90047985	90047985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UBE2J1	NM_016021	exon5	c.G367A	p.G123R	CCTCTCCTTTTGT	.	202.0	11.0	113.0	0.0	.	226
UBE2N	7334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93804590	93804590	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UBE2N	NM_003348	exon3	c.G338C	p.S113T	GGAGCACTTAACA	.	201.0	24.0	147.0	0.0	.	659
USO1	8615	ucsc.edu;bcgsc.ca	37	4	76703966	76703966	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USO1	.	.	.	.	AAATTCTGGCTGG	.	43.0	4.0	32.0	0.0	.	25
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49365180	49365180	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USP4	NM_199443	exon3	c.C299G	p.A100G	TTCCACGCCTCGG	.	167.0	19.0	135.0	0.0	.	660
VAX1	11023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118896079	118896079	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	VAX1	NM_199131	exon2	c.G333C	p.Q111H	ATAGAGCTGCTCC	.	46.0	31.0	48.0	0.0	.	92
VWA8	23078	ucsc.edu;bcgsc.ca	37	13	42486237	42486237	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_015058	exon3	c.G309A	p.G103G	ATCTTGCCCCAAA	.	42.0	4.0	41.0	0.0	.	.
XPNPEP2	7512	broad.mit.edu;bcgsc.ca	37	X	128893154	128893154	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	XPNPEP2	NM_003399	exon15	c.1368-2A>G	.	CTCCATAGGGACG	.	65.0	5.0	65.0	0.0	.	130
ZIC3	7547	ucsc.edu;bcgsc.ca	37	X	136649386	136649386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZIC3	NM_003413	exon1	c.T536C	p.V179A	GGCACGTGGACAA	.	43.0	6.0	86.0	0.0	.	195
ZNF132	7691	ucsc.edu;bcgsc.ca	37	19	58945522	58945522	+	Missense_Mutation	SNP	G	G	T	rs200662557	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF132	NM_003433	exon3	c.C1289A	p.P430Q	TCATACGGTCTTT	.	48.0	4.0	45.0	0.0	G|0.999;A|0.000	92
ZNF536	9745	ucsc.edu;bcgsc.ca	37	19	31039499	31039499	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF536	NM_014717	exon4	c.G2973T	p.S991S	CTCCTCGGTAACT	.	37.0	4.0	38.0	0.0	.	144
ZNF620	253639	broad.mit.edu;bcgsc.ca	37	3	40557547	40557547	+	Silent	SNP	C	C	A	rs148212912	byfrequency;alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF620	NM_175888	exon5	c.C462A	p.T154T	AGATACCTCAGCC	.	82.0	5.0	60.0	0.0	C|1.000;T|0.000	91
ZNF660	285349	ucsc.edu;bcgsc.ca	37	3	44636365	44636365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF660	NM_173658	exon3	c.T680C	p.F227S	AAACTTTCATCTT	.	41.0	4.0	28.0	0.0	.	90
ZNHIT3	9326	ucsc.edu;bcgsc.ca	37	17	34848721	34848721	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNHIT3	NM_004773	exon3	c.C183T	p.T61T	CAAAACCGTAAAG	.	54.0	5.0	52.0	0.0	.	90