Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCC3	8714	ucsc.edu;bcgsc.ca	37	17	48753410	48753410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCC3	NM_003786	exon22	c.C3026T	p.S1009F	ACACTTCCCTGAG	.	150.0	61.0	175.0	1.0	.	93
ALB	213	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74282071	74282071	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ALB	NM_000477	exon10	c.1289+1G>A	.	GAATGCGTAAGTA	.	113.0	43.0	118.0	0.0	.	96
ANKRD12	23253	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	9257082	9257082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD12	NM_015208	exon9	c.A3817G	p.I1273V	GAGCGGATTAAAC	.	235.0	85.0	309.0	1.0	.	92
ANKRD30A	91074	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	37508232	37508232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD30A	NM_052997	exon34	c.C3424A	p.H1142N	GAATCACACCATC	.	164.0	51.0	244.0	0.0	.	161
APOB	338	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	21235238	21235238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APOB	NM_000384	exon26	c.A4502G	p.Y1501C	AGGCCATATGTGC	.	192.0	78.0	260.0	0.0	.	175
ARHGEF12	23365	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120310884	120310884	+	Missense_Mutation	SNP	A	A	G	rs187048571		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGEF12	NM_015313	exon13	c.A1046G	p.H349R	CACCTCATATTAT	.	149.0	56.0	253.0	0.0	A|0.999;G|0.001	661
ARSG	22901	hgsc.bcm.edu;bcgsc.ca	37	17	66391287	66391287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARSG	NM_001267727	exon10	c.G1165T	p.V389L	GATGGTGTGGACG	.	282.0	19.0	289.0	0.0	.	91
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	24042637	24042637	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATAD2B	NM_001242338	exon17	c.2247delA	p.K749fs	GTAGGGTTTATGT	.	86.0	23.0	120.0	0.0	.	68
ATP10A	57194	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	26026311	26026311	+	Missense_Mutation	SNP	C	C	T	rs146522541	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP10A	NM_024490	exon2	c.G509A	p.R170H	CGAAGACGCACAA	.	146.0	60.0	216.0	0.0	C|1.000;T|0.000	139
C3P1	388503	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10157808	10157808	+	RNA	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C3P1	.	.	.	.	ATCTCCCATTACC	.	218.0	63.0	371.0	0.0	.	90
CACNB2	783	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18439889	18439889	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CACNB2	NM_201596	exon2	c.T198C	p.N66N	CTCAAATAGTTTT	.	127.0	48.0	169.0	0.0	.	154
CAMK2A	815	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	149629865	149629865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAMK2A	NM_171825	exon11	c.C824A	p.S275Y	ACGGTGGAGCGGT	.	80.0	26.0	106.0	0.0	.	333
CCDC144B	284047	ucsc.edu;bcgsc.ca	37	17	18498058	18498058	+	RNA	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC144B	.	.	.	.	AGTTGTTCATCAG	.	243.0	32.0	137.0	2.0	.	70
CCDC73	493860	broad.mit.edu;bcgsc.ca	37	11	32739625	32739625	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC73	NM_001008391	exon3	c.A204G	p.E68E	CACCTTTTGCCAT	.	45.0	5.0	63.0	0.0	.	91
CCDC88A	55704	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55536323	55536323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC88A	NM_018084	exon24	c.T4147G	p.F1383V	CATAAAATTTGTA	.	195.0	83.0	187.0	0.0	.	94
CNTRL	11064	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123935974	123935974	+	Missense_Mutation	SNP	G	G	A	rs151059757	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNTRL	NM_007018	exon40	c.G6706A	p.A2236T	GGAGAAGCACTCC	.	80.0	28.0	109.0	0.0	G|1.000;A|0.000	661
COL2A1	1280	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	48387630	48387630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL2A1	NM_001844	exon14	c.G886A	p.D296N	CACCGTCCAGGCC	.	170.0	70.0	253.0	0.0	.	92
COL7A1	1294	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48608294	48608294	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL7A1	NM_000094	exon94	c.G7272A	p.R2424R	CCTCACCCGCTCT	.	173.0	74.0	210.0	0.0	.	160
CTNNB1	1499	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	rs28931589	bycluster	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G101T	p.G34V	ACTCTGGAATCCA	.	303.0	112.0	491.0	0.0	G|1.000;T|0.000	24361
CYFIP2	26999	hgsc.bcm.edu;bcgsc.ca	37	5	156721861	156721861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYFIP2	NM_001037332	exon4	c.A277T	p.I93F	CGGGCCATTCCCA	.	237.0	24.0	327.0	0.0	.	22
DHX34	9704	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47880440	47880440	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DHX34	NM_014681	exon13	c.T2683A	p.C895S	GTGAACTGCGTCC	.	76.0	30.0	134.0	0.0	.	231
DLGAP2	9228	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	1497492	1497492	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DLGAP2	NM_004745	exon2	c.C633T	p.P211P	CCGGCCCGGCATG	.	61.0	42.0	103.0	0.0	.	22
DLGAP5	9787	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55647496	55647496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DLGAP5	NM_014750	exon6	c.T581C	p.V194A	TGCACAACTGTGG	.	126.0	48.0	172.0	0.0	.	92
DMKN	93099	ucsc.edu;bcgsc.ca	37	19	36000834	36000834	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DMKN	NM_001126058	exon7	c.G1017A	p.G339G	CCCGCTCCCGCGG	.	81.0	35.0	174.0	1.0	.	155
DNAH8	1769	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38690855	38690855	+	Silent	SNP	G	G	A	rs180723141	byfrequency;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH8	NM_001206927	exon2	c.G270A	p.P90P	TGCACCGCGACCG	.	118.0	44.0	168.0	0.0	G|0.997;C|0.003	615
ECHDC3	79746	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	11805436	11805436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ECHDC3	NM_024693	exon5	c.C805G	p.L269V	TACTACCTCACCT	.	14.0	8.0	19.0	0.0	.	90
ERI1	90459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8865648	8865648	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERI1	NM_153332	exon2	c.C277G	p.L93V	TTCAAGCTTGAAA	.	50.0	31.0	77.0	0.0	.	68
FBXL4	26235	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	99328458	99328458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXL4	NM_012160	exon7	c.C1360A	p.Q454K	GGTGCTGAAGCTC	.	77.0	28.0	78.0	0.0	.	227
GABRG2	2566	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	161569294	161569294	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GABRG2	NM_198903	exon8	c.G1014A	p.K338K	CAATAAGGATGCT	.	167.0	63.0	240.0	0.0	.	95
GCLM	2730	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94354636	94354636	+	Silent	SNP	C	C	T	rs79501187	byfrequency;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCLM	NM_002061	exon7	c.G735A	p.L245L	TAGCCACAGCGGC	.	91.0	32.0	163.0	1.0	C|0.996;G|0.004	91
GCN1L1	10985	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120582745	120582745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCN1L1	NM_006836	exon40	c.C5137A	p.R1713S	CTGAGCGATCCAC	.	87.0	34.0	129.0	0.0	.	94
GPRASP2	114928	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101971961	101971961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPRASP2	NM_138437	exon4	c.G2164A	p.G722R	ATGTCCGGGTTTC	.	167.0	138.0	215.0	0.0	.	131
GSK3A	2931	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	42736820	42736820	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSK3A	NM_019884	exon9	c.A1113C	p.R371R	CGGCGTTCGAGAT	.	130.0	59.0	126.0	0.0	.	981
HELZ2	85441	broad.mit.edu;mdanderson.org	37	20	62203679	62203679	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001037335	exon2	c.C60A	p.P20P	GGCAGGGGGTGTG	.	11.0	4.0	18.0	0.0	.	.
HERC4	26091	hgsc.bcm.edu;bcgsc.ca	37	10	69785411	69785411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC4	NM_022079	exon8	c.G800T	p.G267V	CCAGCTCCAAAAG	.	107.0	43.0	133.0	0.0	.	659
HIF3A	64344	ucsc.edu;bcgsc.ca	37	19	46832575	46832575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIF3A	NM_152795	exon12	c.G1552A	p.A518T	CTGGGGGCTGTCC	.	159.0	54.0	198.0	1.0	.	228
HIST1H1C	3006	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	26056377	26056377	+	Missense_Mutation	SNP	C	C	T	rs186228942	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST1H1C	NM_005319	exon1	c.G280A	p.V94M	TTTGCACCAGAGT	.	243.0	103.0	318.0	1.0	C|0.999;G|0.000	231
HIST1H4G	8369	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	26246913	26246913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST1H4G	NM_003547	exon1	c.T293C	p.L98P	CCTTACAGGGTTC	.	117.0	39.0	138.0	0.0	.	68
HIST2H2AC	8338	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149858905	149858905	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST2H2AC	NM_003517	exon1	c.A381G	p.K127K	AGCCAAAAGCAAA	.	394.0	78.0	281.0	0.0	.	92
HSD17B13	345275	hgsc.bcm.edu;bcgsc.ca	37	4	88231395	88231395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HSD17B13	NM_178135	exon6	c.A812G	p.K271R	ACTTACTTCTGTA	.	207.0	11.0	316.0	0.0	.	90
IMMT	10989	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	86385804	86385804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IMMT	NM_006839	exon10	c.A1073G	p.Y358C	TCATGATACTGAG	.	137.0	58.0	173.0	0.0	.	91
KCNK10	54207	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	88693828	88693828	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNK10	NM_138318	exon4	c.572delT	p.L191fs	GCATATAAAATAC	.	97.0	40.0	80.0	0.0	.	95
KCNK2	3776	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215297991	215297991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNK2	NM_001017425	exon3	c.A373G	p.I125V	GCAGCAATAAATG	.	391.0	106.0	310.0	0.0	.	90
KHDRBS2	202559	broad.mit.edu;bcgsc.ca	37	6	62604676	62604676	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KHDRBS2	NM_152688	exon6	c.674delG	p.G225fs	GTGCTTCCCCGAG	.	30.0	9.0	45.0	0.0	.	272
KRT5	3852	ucsc.edu;bcgsc.ca	37	12	52913639	52913639	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KRT5	NM_000424	exon1	c.A442T	p.S148C	GGAGACTCTGGTT	.	361.0	138.0	518.0	2.0	.	90
KRTAP2-3	730755	broad.mit.edu;mdanderson.org	37	17	39216037	39216037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001165252	exon1	c.G266T	p.C89F	GGCCTGCACACCA	.	32.0	16.0	37.0	0.0	.	.
LAMA2	3908	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	6	129636958	129636958	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMA2	NM_000426	exon26	c.G3787T	p.E1263X	GCTCGGGAAGAAA	.	69.0	30.0	70.0	0.0	.	162
LMTK2	22853	hgsc.bcm.edu;ucsc.edu	37	7	97821054	97821054	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LMTK2	NM_014916	exon11	c.G1277A	p.W426X	AGCAGTGGAACGC	.	219.0	111.0	220.0	1.0	.	1381
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	51637805	51637806	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAGED1	NM_001005333	exon3	c.128_129del	p.43_43del	CCACTCTGTGCGA	.	131.0	85.0	224.0	0.0	.	133
MAPKAPK5	8550	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112330837	112330837	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPKAPK5	NM_139078	exon14	c.A1394T	p.E465V	TAGAAGAGCAAAC	.	95.0	40.0	143.0	0.0	.	1215
MED12L	116931	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151107817	151107817	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MED12L	NM_053002	exon36	c.C5397A	p.I1799I	GCCTATCTCCTCC	.	86.0	32.0	166.0	0.0	.	576
METTL18	92342	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	169762228	169762228	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	METTL18	NM_033418	exon2	c.A609C	p.I203I	TGCAGTTATACCT	.	294.0	55.0	208.0	0.0	.	90
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42035016	42035016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MGA	NM_001164273	exon15	c.G4858A	p.D1620N	ATTTCTGACGTGG	.	48.0	19.0	70.0	0.0	.	522
MIP	4284	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	56848277	56848277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MIP	NM_012064	exon1	c.G121T	p.V41F	GCAGAACATGCAG	.	334.0	127.0	439.0	0.0	.	91
MLL4	8085	ucsc.edu;bcgsc.ca	37	19	36214634	36214634	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL4	NM_014727	exon8	c.C3060G	p.G1020G	CCGCAGCCGGACG	.	49.0	6.0	110.0	0.0	.	697
MLLT6	4302	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	36861960	36861960	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLLT6	NM_005937	exon1	c.C75T	p.C25C	CTACTGCGATGGG	.	88.0	29.0	166.0	0.0	.	659
OBSCN	84033	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228560756	228560756	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OBSCN	NM_001271223	exon105	c.C25148G	p.S8383C	ACATCTCCCGGAT	.	184.0	40.0	125.0	0.0	.	403
OR10G9	219870	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123894415	123894415	+	Silent	SNP	G	G	C	rs150463109	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR10G9	NM_001001953	exon1	c.G696C	p.G232G	AGAGGGGAGGCAC	.	376.0	172.0	441.0	0.0	G|0.997;T|0.003	92
OR2AT4	341152	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74799967	74799967	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR2AT4	NM_001005285	exon1	c.C792T	p.Y264Y	GGCCACGTAGGCT	.	146.0	69.0	235.0	0.0	.	69
PCDHGA2	56113	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	140720687	140720687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCDHGA2	NM_018915	exon1	c.C2149T	p.R717W	AGGCTGCGGCGCT	.	344.0	131.0	399.0	0.0	.	71
PCNXL2	80003	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	233334767	233334767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCNXL2	NM_014801	exon15	c.G2984T	p.G995V	GTTATCCCAGACA	.	478.0	312.0	398.0	0.0	.	91
PFKL	5211	broad.mit.edu;bcgsc.ca	37	21	45744776	45744776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PFKL	NM_002626	exon18	c.A1853G	p.D618G	AGACAGACATTCA	.	190.0	8.0	261.0	1.0	.	251
PGM2L1	283209	ucsc.edu;bcgsc.ca	37	11	74056546	74056546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PGM2L1	NM_173582	exon9	c.G1186T	p.A396S	CAATTGCCTTCAG	.	90.0	38.0	110.0	2.0	.	91
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118526376	118526376	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHLDB1	NM_001144758	exon21	c.C3936T	p.Y1312Y	GTACTACGACCAC	.	64.0	27.0	88.0	0.0	.	90
PKP3	11187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	397014	397014	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKP3	NM_007183	exon3	c.G513A	p.G171G	GGTTGGGAGCCGG	.	40.0	17.0	37.0	0.0	.	91
PKP4	8502	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	159499020	159499020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKP4	NM_001005476	exon11	c.A1718G	p.K573R	GAATCAAGCATCT	.	126.0	43.0	130.0	0.0	.	97
PLEKHB2	55041	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131884342	131884342	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHB2	NM_001267062	exon4	c.A276G	p.E92E	TGCAGAAAGCACA	.	94.0	36.0	102.0	0.0	.	92
POLR2B	5431	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57883331	57883331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POLR2B	NM_000938	exon15	c.A2078G	p.Y693C	CCACATATACACA	.	357.0	153.0	440.0	1.0	.	92
PPA1	5464	hgsc.bcm.edu;bcgsc.ca	37	10	71969338	71969338	+	Silent	SNP	C	C	A	rs79719906	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPA1	NM_021129	exon7	c.G615T	p.A205A	ATTAAACGCAAAC	.	174.0	18.0	246.0	0.0	C|0.987;A|0.013	153
PPA1	5464	hgsc.bcm.edu;bcgsc.ca	37	10	71969401	71969401	+	Silent	SNP	T	T	C	rs150430650		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPA1	NM_021129	exon7	c.A552G	p.E184E	AGTAGCTTCTAAG	.	252.0	18.0	337.0	0.0	.	153
PRICKLE1	144165	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	42858256	42858256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRICKLE1	NM_001144882	exon7	c.T1580C	p.L527P	GGTTTCAGGTCTG	.	266.0	96.0	328.0	0.0	.	518
PSMD12	5718	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65346351	65346351	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PSMD12	NM_002816	exon4	c.A399G	p.E133E	CTTGCCTTCGGTA	.	154.0	47.0	137.0	0.0	.	90
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	87735675	87735675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPN13	NM_080685	exon48	c.C7444A	p.Q2482K	GAAGAGCAAAAAC	.	404.0	180.0	565.0	0.0	.	230
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125772702	125772702	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RABGAP1	NM_012197	exon11	c.G1444C	p.E482Q	GAATCAGAAAGAG	.	75.0	30.0	84.0	0.0	.	500
RAD54B	25788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	95390864	95390864	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAD54B	NM_001205263	exon12	c.1696-2A>G	.	ATTGCCTATAGAA	.	97.0	28.0	101.0	0.0	.	539
RFC5	5985	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	118464813	118464813	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFC5	NM_007370	exon8	c.A783G	p.T261T	CACCACAGCCTAC	.	69.0	23.0	116.0	0.0	.	227
RFC5	5985	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118464801	118464801	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFC5	NM_007370	exon8	c.A771C	p.Q257H	GAATCAAGATTTC	.	72.0	30.0	123.0	0.0	.	227
RIMS1	22999	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	73102485	73102485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RIMS1	NM_014989	exon31	c.C4591T	p.R1531C	GTTGGCCGCCAAA	.	80.0	33.0	143.0	0.0	.	144
RNU6-71	100873774	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56473249	56473249	+	RNA	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	CAGAAGAGCACTG	.	66.0	32.0	95.0	0.0	.	.
SACS	26278	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23929049	23929049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SACS	NM_014363	exon8	c.G1702T	p.D568Y	CCCAGTCACAGCT	.	143.0	46.0	180.0	0.0	.	298
SHISA2	387914	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	26620702	26620702	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SHISA2	NM_001007538	exon2	c.837delC	p.P279fs	AGGGAAGGGGGAC	.	91.0	27.0	97.0	0.0	.	69
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	186598269	186598273	+	Frame_Shift_Del	DEL	TCCTG	TCCTG	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TCCTG	TCCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SORBS2	NM_001145673	exon5	c.370_374del	p.124_125del	TCAAGATCCTGTC	.	126.0	41.0	169.0	0.0	.	91
SSPO	23145	hgsc.bcm.edu;bcgsc.ca	37	7	149506213	149506213	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_198455	exon63	c.9204+1T>C	.	AGCAGCTGCGCAG	.	412.0	33.0	539.0	0.0	.	.
SYNE2	23224	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64465664	64465664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYNE2	NM_182914	exon27	c.A3386G	p.H1129R	AACACCACCTGCA	.	153.0	56.0	202.0	2.0	.	164
TALDO1	6888	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	759019	759019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TALDO1	NM_006755	exon3	c.G291T	p.K97N	ACTAAAGAAGATT	.	121.0	47.0	160.0	0.0	.	90
TCEAL6	158931	hgsc.bcm.edu;bcgsc.ca	37	X	101395778	101395778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL6	NM_001006938	exon3	c.G526A	p.G176R	TGTCCCCTTGGGC	.	164.0	23.0	108.0	0.0	.	91
TCEAL6	158931	hgsc.bcm.edu;broad.mit.edu	37	X	101395774	101395774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL6	NM_001006938	exon3	c.A530G	p.D177G	CCGTTGTCCCCTT	.	170.0	12.0	108.0	0.0	.	91
TCEB3B	51224	hgsc.bcm.edu;ucsc.edu	37	18	44560926	44560926	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEB3B	NM_016427	exon1	c.T710A	p.L237X	GCACACAAGGGGC	.	225.0	100.0	255.0	1.0	.	156
TEAD4	7004	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	3126664	3126664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TEAD4	NM_003213	exon6	c.G455A	p.R152Q	TCGCCCGGGGCCC	.	197.0	77.0	304.0	0.0	.	90
THSD7B	80731	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	138413197	138413197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THSD7B	.	.	.	.	GACAGCATCCTGA	.	192.0	76.0	285.0	0.0	.	75
TLR1	7096	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38799868	38799868	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLR1	NM_003263	exon4	c.G585C	p.V195V	GGGGAACACAATG	.	146.0	62.0	190.0	0.0	.	524
TMEM2	23670	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74347404	74347404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM2	NM_013390	exon7	c.A1426G	p.I476V	CGTCTATGATCTC	.	113.0	41.0	174.0	0.0	.	92
TMEM237	65062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202501540	202501540	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001044385	exon4	c.A205T	p.T69S	CTTTAGTTGATGG	.	44.0	18.0	53.0	0.0	.	.
TNRC6B	23112	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40657900	40657900	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNRC6B	NM_001024843	exon7	c.A288G	p.P96P	CTCTCCATCGCCA	.	181.0	69.0	248.0	0.0	.	22
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7578503	7578503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	TP53,NS,carcinoma,+1	TP53	NM_000546	exon5	c.G427A	p.V143M	GCTGCACAGGGCA	.	125.0	51.0	167.0	0.0	.	70225
TRIM65	201292	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	73887372	73887372	+	Missense_Mutation	SNP	G	G	A	rs144407004		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRIM65	NM_173547	exon6	c.C1042T	p.R348C	CCTGGCGCGACAG	.	115.0	34.0	131.0	0.0	G|1.000;A|0.000	90
VPS35	55737	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	46696258	46696258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS35	NM_018206	exon15	c.T1964G	p.L655R	GCAGCAAGGGCAC	.	143.0	52.0	211.0	0.0	.	90
VSIG10L	147645	hgsc.bcm.edu;bcgsc.ca	37	19	51835894	51835894	+	Missense_Mutation	SNP	C	C	G	rs200336358		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001163922	exon10	c.G2575C	p.A859P	TCTGTGCCTGGAA	.	94.0	11.0	132.0	0.0	.	.
WNK4	65266	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	40932748	40932748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WNK4	NM_032387	exon1	c.T32C	p.V11A	CCACCGTCCTCAT	.	46.0	19.0	93.0	1.0	.	336
WT1-AS	51352	ucsc.edu;mdanderson.org	37	11	32460561	32460561	+	RNA	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WT1-AS	.	.	.	.	CAGTGAGGATTTC	.	96.0	33.0	133.0	0.0	.	68
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22155940	22155940	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF208	NM_007153	exon4	c.T1896C	p.A632A	CTCTCCAGCATGA	.	83.0	28.0	69.0	0.0	.	7
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	21719985	21719985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF429	NM_001001415	exon4	c.C1130A	p.A377D	GCAAAGCTTTTAA	.	28.0	9.0	33.0	0.0	.	516
ZNF536	9745	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	30935925	30935925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF536	NM_014717	exon2	c.C1456A	p.H486N	GACAAGCACTCCC	.	60.0	19.0	75.0	0.0	.	144
ZRANB3	84083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	135985575	135985575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZRANB3	NM_032143	exon14	c.A1965G	p.I655M	GCTATCTATTTGC	.	104.0	37.0	92.0	0.0	.	658
ARHGEF33	100271715	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	39181520	39181521	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	p.E382I	GGTGATGAAGAGA	.	120.0	36.0	201.0	0.0	.	.
WHSC1L1	54904	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	38148152	38148153	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	p.N987Y	GGATGTTCAGTGG	.	150.0	53.0	173.0	0.0	.	.