Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94577092	94577092	+	Silent	SNP	C	C	T	rs201725352		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ABCA4	NM_000350	exon3	c.G204A	p.P68P	GAGCCACGGCAGC	.	89.0	44.0	170.0	0.0	C|0.999;T|0.001	162
ACAT2	39	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160189612	160189612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ACAT2	NM_005891	exon4	c.T442A	p.C148S	ATACTCTGTGATG	.	69.0	22.0	206.0	0.0	.	91
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91694746	91694746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	AKAP9_ENST00000356239,NS,other,0	AKAP9	NM_005751	exon25	c.A6179G	p.K2060R	TGGAAAAGCAGTT	.	50.0	23.0	100.0	1.0	.	755
ALB	213	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74283835	74283835	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ALB	NM_000477	exon12	c.T1459G	p.L487V	TGTGTGTTGCATG	.	53.0	16.0	141.0	1.0	.	96
ALG12	79087	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	50303561	50303561	+	Silent	SNP	C	C	T	rs12167668	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ALG12	NM_024105	exon5	c.G645A	p.P215P	CCCTGCCGGGACG	.	81.0	9.0	263.0	0.0	C|0.993;T|0.007	90
ANKRD17	26057	hgsc.bcm.edu;bcgsc.ca	37	4	74008384	74008384	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ANKRD17	NM_198889	exon12	c.T2058G	p.H686Q	TGCCCCATGAGCC	.	57.0	20.0	93.0	0.0	.	234
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74008379	74008379	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ANKRD17	NM_198889	exon12	c.2063delC	p.A688fs	GGATCTGCCCCAT	.	53.0	19.0	81.0	0.0	.	234
APPBP2	10513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58571884	58571884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	APPBP2	NM_006380	exon3	c.A322G	p.I108V	CTGCTATATAAGA	.	77.0	44.0	100.0	0.0	.	226
ARHGEF10L	55160	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	17948399	17948422	+	In_Frame_Del	DEL	AAGGCAGCTACGTGGAGTCTCTGA	AAGGCAGCTACGTGGAGTCTCTGA	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	AAGGCAGCTACGTGGAGTCTCTGA	AAGGCAGCTACGTGGAGTCTCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ARHGEF10L	NM_018125	exon11	c.983_1006del	p.328_336del	AGAGCGAAGGCAG	.	65.0	11.0	197.0	0.0	.	292
ATAD2	29028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	124408568	124408568	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ATAD2	NM_014109	exon1	c.G30A	p.L10L	GTTGTGCAGCTCC	.	88.0	5.0	72.0	0.0	.	92
ATP5A1	498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43667458	43667458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ATP5A1	NM_004046	exon7	c.A800T	p.D267V	ATGGCATCTGAGA	.	90.0	21.0	256.0	0.0	.	90
BCLAF1	9774	hgsc.bcm.edu;bcgsc.ca	37	6	136599396	136599396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	BCLAF1	NM_014739	exon4	c.C623A	p.T208K	CCGGATGTGGCTG	.	72.0	10.0	165.0	0.0	.	228
BLNK	29760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97956734	97956734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	BLNK	NM_013314	exon16	c.A1181G	p.Y394C	ATATTATATACTC	.	14.0	7.0	68.0	0.0	.	92
C1QTNF1	114897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	77042704	77042704	+	Missense_Mutation	SNP	C	C	T	rs148895244		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	C1QTNF1	NM_030968	exon3	c.C223T	p.R75C	TGCTTGCGCTGCT	.	126.0	29.0	246.0	1.0	C|1.000;T|0.000	91
CACNA1E	777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181700363	181700363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CACNA1E	NM_001205293	exon19	c.C2293A	p.H765N	AGCAGCCACCTGT	.	123.0	34.0	260.0	2.0	.	95
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	31682701	31682701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001257968	exon11	c.G1795A	p.V599I	ACCCACGTCACAG	.	82.0	30.0	184.0	0.0	.	.
CCDC138	165055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	109405347	109405347	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CCDC138	NM_144978	exon3	c.C191A	p.S64X	GTTCATCGTTAAA	.	54.0	14.0	140.0	0.0	.	90
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	13	103392315	103392315	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001146197	exon4	c.T10732A	p.W3578R	TCTTCCATTTCGA	.	112.0	43.0	198.0	0.0	.	.
CD163	9332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7640068	7640068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CD163	NM_203416	exon8	c.G1937T	p.W646L	TGCCTCCAGATCT	.	149.0	58.0	334.0	1.0	.	98
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240072344	240072344	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CHRM3	NM_000740	exon5	c.G1593C	p.W531C	CTACTGGCTGTGC	.	96.0	32.0	367.0	0.0	.	95
CLIP4	79745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29366660	29366660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CLIP4	NM_024692	exon7	c.A734G	p.K245R	CTGCTAAGGAAAT	.	146.0	41.0	371.0	0.0	.	91
CPE	1363	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166388853	166388853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CPE	NM_001873	exon3	c.A518G	p.K173R	AACTCAAGGACTG	.	40.0	11.0	83.0	1.0	.	155
CR1L	1379	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207872610	207872619	+	Frame_Shift_Del	DEL	GTGTGTGAAC	GTGTGTGAAC	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	GTGTGTGAAC	GTGTGTGAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CR1L	NM_175710	exon8	c.1219_1228del	p.407_410del	GTTCCAGTGTGTG	.	112.0	12.0	402.0	0.0	.	46
CREBRF	153222	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	172517412	172517412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_153607	exon4	c.T230G	p.V77G	CAGATGTCCTGGA	.	163.0	58.0	407.0	2.0	.	.
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41268760	41268760	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CTNNB1	NM_001098209	exon7	c.A998T	p.Y333F	ATACTTACGAAAA	.	39.0	14.0	107.0	0.0	.	24361
DAB2IP	153090	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	124535286	124535286	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DAB2IP	NM_032552	exon12	c.T2395G	p.S799A	CCGCTCTCCTTCC	.	32.0	11.0	41.0	0.0	.	91
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50450198	50450198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DCC	NM_005215	exon4	c.G819T	p.W273C	TACCTGGTTACGA	.	137.0	36.0	264.0	0.0	.	225
DDAH2	23564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31695402	31695402	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DDAH2	NM_013974	exon6	c.G659C	p.C220S	AAGAGACAGTCAG	.	88.0	21.0	253.0	0.0	.	90
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	79577541	79577541	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DLG5	NM_004747	exon18	c.C3778G	p.R1260G	CCAGGCGGGCGCT	.	52.0	29.0	161.0	0.0	.	98
DNAH3	55567	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21049196	21049196	+	Missense_Mutation	SNP	C	C	A	rs141984585		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DNAH3	NM_017539	exon34	c.G4837T	p.A1613S	TTCCTGCGGCAGT	.	179.0	65.0	443.0	0.0	C|0.998;A|0.002	167
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11573031	11573031	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DNAH9	NM_001372	exon17	c.C3273G	p.P1091P	TCGACCCTTTAAG	.	32.0	20.0	139.0	0.0	.	168
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116497381	116497381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DPP10	NM_001178034	exon9	c.T776C	p.M259T	TCCTGATGATAAA	.	197.0	52.0	414.0	0.0	.	142
ECE2	9718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183995039	183995039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ECE2	NM_014693	exon4	c.A617G	p.D206G	CCACAGACCCATC	.	70.0	20.0	269.0	0.0	.	94
ELMO1	9844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36895340	36895340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ELMO1	NM_014800	exon22	c.A2000G	p.D667G	AGTCCATCCGTCC	.	135.0	38.0	312.0	0.0	.	96
ELTD1	64123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	79403627	79403627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ELTD1	NM_022159	exon6	c.G625A	p.V209I	CCCAAACTACAAA	.	80.0	33.0	153.0	1.0	.	24
EMX1	2016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73160942	73160942	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	EMX1	NM_004097	exon3	c.G732A	p.R244R	CCGGAGGACAAAG	.	56.0	17.0	161.0	0.0	.	90
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134920510	134920510	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	EPHB1	NM_004441	exon12	c.T2325G	p.D775E	CTCAGATCCCACC	.	175.0	60.0	393.0	1.0	.	1492
FAM200B	285550	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	15689295	15689295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001145191	exon2	c.G695A	p.S232N	ATGAAAGCACTGA	.	15.0	5.0	51.0	0.0	.	.
GARS	2617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	30673470	30673470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GARS	NM_002047	exon17	c.G2214T	p.E738D	AATCGAGGAATGA	.	35.0	17.0	91.0	0.0	.	91
GCC1	79571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127222282	127222282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GCC1	NM_024523	exon2	c.A2114G	p.H705R	TCGATGTGGCTCT	.	225.0	62.0	620.0	1.0	.	92
GPRIN1	114787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176024063	176024063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GPRIN1	NM_052899	exon2	c.T2773C	p.Y925H	CGCCGTATACCTC	.	18.0	8.0	21.0	0.0	.	92
GPRIN3	285513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90171127	90171127	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GPRIN3	NM_198281	exon2	c.T135C	p.N45N	AAAGCCATTGGCA	.	62.0	23.0	141.0	0.0	.	71
GRIPAP1	56850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48834814	48834814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GRIPAP1	NM_020137	exon22	c.C1964T	p.S655L	CTTGGTGAGTTCA	.	21.0	20.0	62.0	2.0	.	227
HIST1H3D	8351	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26197153	26197153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HIST1H3D	NM_003530	exon2	c.A326G	p.N109S	CATAGGTTGGTGT	.	137.0	40.0	386.0	2.0	.	90
HOXB5	3215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	46669637	46669637	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HOXB5	NM_002147	exon2	c.G744C	p.K248N	CTTCCACTTCATG	.	104.0	48.0	164.0	0.0	.	90
HS2ST1	9653	hgsc.bcm.edu;bcgsc.ca	37	1	87563544	87563544	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HS2ST1	NM_012262	exon5	c.A612C	p.E204D	AGCAGAAGGTGGC	.	121.0	17.0	258.0	0.0	.	90
HS2ST1	9653	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	87563541	87563541	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HS2ST1	NM_012262	exon5	c.609delA	p.A203fs	TGTAGCAGAAGGT	.	114.0	17.0	248.0	0.0	.	90
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	75888748	75888748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	IQGAP2	NM_006633	exon9	c.A905G	p.N302S	AAGTCAACAGTAA	.	165.0	49.0	336.0	0.0	.	96
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15559199	15559199	+	Silent	SNP	G	G	T	rs199977895		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ITGA8	NM_003638	exon30	c.C3150A	p.T1050T	CCTGTCGGTCATG	.	42.0	18.0	65.0	0.0	G|0.999;T|0.001	230
KCNA5	3741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5153808	5153808	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KCNA5	NM_002234	exon1	c.C495T	p.F165F	CTTCTTCGACCGC	.	60.0	30.0	109.0	0.0	.	715
KIAA1683	80726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18368011	18368011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KIAA1683	NM_001145304	exon4	c.C4083A	p.H1361Q	ATGCATGTGCCGT	.	39.0	13.0	115.0	0.0	.	92
KLHDC4	54758	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	87741993	87741994	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KLHDC4	NM_017566	exon11	c.1526_1527del	p.509_509del	GTCTTCGTCGTCG	.	44.0	10.0	98.0	0.0	.	182
KLHL1	57626	broad.mit.edu;ucsc.edu	37	13	70549804	70549804	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KLHL1	NM_020866	exon2	c.C628T	p.Q210X	AAAGTTGCTGCTG	.	55.0	5.0	122.0	0.0	.	90
KRT23	25984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39084785	39084785	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KRT23	NM_015515	exon5	c.G711C	p.L237L	CTTAATCAGATCT	.	74.0	18.0	168.0	0.0	.	91
KRT39	390792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39118509	39118509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_213656	exon5	c.A901G	p.S301G	GAGAGCTGGTCAC	.	76.0	32.0	132.0	0.0	.	.
KRT39	390792	ucsc.edu;bcgsc.ca	37	17	39118510	39118510	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_213656	exon5	c.C900A	p.T300T	AGAGCTGGTCACC	.	76.0	33.0	129.0	2.0	.	.
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113635842	113635842	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	LRIG2	NM_014813	exon3	c.A320G	p.N107S	ATTACAATGAACT	.	122.0	26.0	245.0	0.0	.	229
LRP1B	53353	broad.mit.edu;ucsc.edu	37	2	141122263	141122263	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	LRP1B	NM_018557	exon72	c.G11098T	p.G3700X	TGTCTCCACAGTC	.	163.0	48.0	208.0	2.0	.	311
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235964399	235964399	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	LYST	NM_000081	exon10	c.3713-2A>T	.	TACCCCTGAAAAG	.	19.0	7.0	48.0	0.0	.	143
MAEL	84944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166990985	166990985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MAEL	NM_032858	exon12	c.A1198G	p.I400V	GAGAGCATTTCCA	.	153.0	44.0	395.0	0.0	.	91
MAVS	57506	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3845200	3845200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MAVS	NM_020746	exon6	c.T923C	p.V308A	ACACAGTGGCCCT	.	67.0	22.0	211.0	1.0	.	90
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141763307	141763307	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MGAM	NM_004668	exon36	c.T4266C	p.N1422N	TATGAATGAACCA	.	70.0	21.0	157.0	0.0	.	70
MLL	4297	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	118342446	118342446	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MLL	NM_001197104	exon3	c.C572G	p.S191X	TCCTCTCAGATCC	.	37.0	15.0	143.0	1.0	.	1255
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11317091	11317091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	MTOR,NS,malignant_melanoma,+1	MTOR	NM_004958	exon4	c.A403G	p.M135V	CTGCCATGGCAAG	.	231.0	157.0	603.0	2.0	.	1439
MYEF2	50804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48458174	48458174	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MYEF2	NM_016132	exon5	c.A481C	p.M161L	TGTTCATAGTTTC	.	51.0	17.0	87.0	0.0	.	523
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23902342	23902342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MYH7	NM_000257	exon4	c.C296T	p.P99L	ACCGCGGGCTCAT	.	182.0	66.0	413.0	0.0	.	94
MYO9B	4650	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17298831	17298831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MYO9B	NM_001130065	exon19	c.T2665C	p.Y889H	TCAGGGTACAGCG	.	152.0	47.0	384.0	2.0	.	67
NAA16	79612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	41905450	41905450	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NAA16	NM_001110798	exon8	c.T852C	p.S284S	AATTAGTAAGCAG	.	64.0	20.0	115.0	0.0	.	90
NAT8	9027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73868277	73868277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NAT8	NM_003960	exon2	c.C479A	p.T160N	AGGACAGTCCTGA	.	107.0	44.0	296.0	1.0	.	91
NDN	4692	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23931945	23931945	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NDN	NM_002487	exon1	c.C420A	p.L140L	GCGCCGGAGGATG	.	27.0	9.0	43.0	1.0	.	90
NDRG1	10397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134270653	134270653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NDRG1	NM_006096	exon7	c.G406A	p.G136S	CCATGCCAATAAT	.	212.0	65.0	270.0	0.0	.	230
NOTCH2NL	388677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	145281400	145281400	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NOTCH2NL	NM_203458	exon4	c.G330T	p.L110L	CTGCCTGTCTCAT	.	1094.0	78.0	2309.0	0.0	.	211
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176562395	176562395	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NSD1	NM_022455	exon2	c.T291G	p.F97L	ATCCTTTCAAGAC	.	51.0	16.0	142.0	0.0	.	188
OBSCN	84033	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228538636	228538636	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	OBSCN	NM_001271223	exon88	c.G21282A	p.P7094P	GTACCCGCAGATC	.	142.0	50.0	224.0	2.0	.	403
ODF2	4957	ucsc.edu;bcgsc.ca	37	9	131246268	131246268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ODF2	NM_153435	exon11	c.G1231A	p.G411R	ATGCGTGGGCATT	.	26.0	4.0	106.0	0.0	.	69
OR2M3	127062	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248367191	248367191	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	OR2M3	NM_001004689	exon1	c.G822T	p.V274V	GATGGTGTCTGTA	.	145.0	32.0	298.0	2.0	.	70
PAQR9	344838	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	142682019	142682019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PAQR9	NM_198504	exon1	c.T160G	p.F54V	CCACGAAGTCGTC	.	67.0	19.0	105.0	0.0	.	68
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30726026	30726026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PCDH7	NM_032457	exon1	c.G2982T	p.R994S	GGCAAGGCATTAC	.	100.0	36.0	222.0	0.0	.	229
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39902096	39902096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001100399	exon14	c.A1531G	p.M511V	GAAGCATGTTCTG	.	34.0	16.0	93.0	0.0	.	.
PGM3	5238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	83881724	83881724	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PGM3	NM_001199917	exon12	c.A1381C	p.K461Q	AGCCCTTCAGAGC	.	37.0	9.0	137.0	0.0	.	90
PHF6	84295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	133527959	133527959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PHF6	NM_032335	exon5	c.A395G	p.K132R	AACACAAGAAAAC	.	51.0	27.0	125.0	0.0	.	131
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	587380	587380	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PHRF1	NM_020901	exon4	c.C336A	p.L112L	CTGTCTCAACGCA	.	49.0	24.0	222.0	0.0	.	22
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209190271	209190271	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PIKFYVE	NM_015040	exon20	c.C2736T	p.P912P	CATCCCCTGGGAT	.	67.0	17.0	163.0	0.0	.	583
PLXNA4	91584	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	131910919	131910919	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PLXNA4	NM_020911	exon9	c.1982+1G>A	.	CACTTACGAATTG	.	78.0	34.0	203.0	1.0	.	91
POMT2	29954	broad.mit.edu;ucsc.edu	37	14	77744797	77744797	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	POMT2	NM_013382	exon20	c.C2087G	p.P696R	GCCAGGGGCCATG	.	24.0	7.0	71.0	2.0	.	91
PRDM1	639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106554333	106554333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PRDM1	NM_001198	exon6	c.C1861T	p.H621Y	CAGAAACACTACC	.	85.0	36.0	220.0	0.0	.	862
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141874456	141874456	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PTK2	NM_005607	exon5	c.C471G	p.N157K	AAACTGGTTTAGA	.	90.0	32.0	169.0	0.0	.	1517
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	87655497	87655497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PTPN13	NM_006264	exon13	c.A1900G	p.K634E	TTAACCAAAGTGG	.	38.0	10.0	105.0	0.0	.	230
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	8504350	8504350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PTPRD	NM_130392	exon12	c.A1733G	p.N578S	AAGCTGTTTGGTT	.	135.0	41.0	348.0	0.0	.	912
RBM39	9584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	34319990	34319990	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	RBM39	NM_184234	exon4	c.C169T	p.R57X	TACTTCGCTTCCG	.	57.0	18.0	143.0	0.0	.	91
RPL23A	6147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	27049757	27049757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	RPL23A	NM_000984	exon3	c.A226G	p.I76V	TATGCTATCATCA	.	199.0	84.0	351.0	0.0	.	91
RPTOR	57521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78857615	78857615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	RPTOR	NM_020761	exon16	c.G1685A	p.C562Y	CCATCTGCCTGGA	.	60.0	17.0	96.0	0.0	.	847
SCNN1A	6337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6483876	6483876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SCNN1A	NM_001159576	exon1	c.A251G	p.K84R	TCACGCTTGTTCC	.	35.0	16.0	67.0	0.0	.	90
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	51169547	51169547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SHANK3	NM_033517	exon22	c.G4961T	p.W1654L	AGCTCTGGAGCAA	.	18.0	5.0	83.0	0.0	.	69
SHISA6	388336	broad.mit.edu;ucsc.edu	37	17	11166793	11166793	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SHISA6	NM_207386	exon2	c.C749A	p.S250X	TCAGATCGTCCTC	.	94.0	34.0	344.0	2.0	.	67
SLC13A4	26266	hgsc.bcm.edu;mdanderson.org	37	7	135412217	135412217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC13A4	NM_012450	exon1	c.G28A	p.V10I	TCCGGACTCGGAG	.	26.0	11.0	8.0	0.0	.	90
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19516230	19516230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC24A2	NM_020344	exon10	c.T1907A	p.M636K	CCAAACATGATGA	.	131.0	34.0	267.0	0.0	.	517
SLC7A9	11136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33324221	33324221	+	Silent	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC7A9	NM_001243036	exon12	c.A1233T	p.V411V	AATGACTACGGGC	.	152.0	45.0	430.0	1.0	.	91
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70634240	70634240	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC8A3	NM_183002	exon2	c.C900T	p.N300N	CACCAGGTTCCCA	.	23.0	7.0	95.0	0.0	.	225
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	88330185	88330185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLITRK5	NM_015567	exon2	c.G2542A	p.V848M	TCGCCGGTGCAGG	.	46.0	18.0	84.0	0.0	.	94
SOX9	6662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	70119055	70119055	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SOX9	NM_000346	exon2	c.C627T	p.A209A	GCAGGCCGACTCG	.	87.0	49.0	116.0	0.0	.	514
SPG20OS	100507135	bcgsc.ca;mdanderson.org	37	13	36939921	36939921	+	RNA	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	.	.	.	.	ATTTGTGGAATGC	.	90.0	15.0	282.0	0.0	.	.
SREBF2	6721	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42271606	42271606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SREBF2	NM_004599	exon7	c.G1264A	p.E422K	AAGATCGAGGACT	.	88.0	13.0	253.0	1.0	.	154
SUMF2	25870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	56140741	56140741	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SUMF2	NM_015411	exon3	c.G333C	p.W111C	TGGATGGAGCTTT	.	84.0	20.0	178.0	0.0	.	92
SUPV3L1	6832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70955011	70955011	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SUPV3L1	NM_003171	exon7	c.A921T	p.R307S	GACCAGAGCACTT	.	39.0	20.0	150.0	0.0	.	227
SYAP1	94056	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	16761852	16761852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SYAP1	NM_032796	exon5	c.C464A	p.P155Q	ACCCTCCGGCTGG	.	23.0	15.0	77.0	1.0	.	131
TC2N	123036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92265340	92265340	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TC2N	NM_001128596	exon6	c.A630C	p.R210S	CAGGCTTCTGTTA	.	13.0	7.0	24.0	0.0	.	69
TCEAL8	90843	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	102508744	102508744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TCEAL8	NM_001006684	exon2	c.A164G	p.N55S	GGCTGATTCGGCC	.	75.0	4.0	184.0	0.0	.	131
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62230425	62230425	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TEX2	NM_018469	exon10	c.A3041T	p.E1014V	ATAAACTCTGTCT	.	66.0	28.0	115.0	0.0	.	91
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578513	7578513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	TP53,arm,other,-2	TP53	NM_000546	exon5	c.G417T	p.K139N	GCAGGTCTTGGCC	.	48.0	24.0	111.0	0.0	.	70225
TTI1	9675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36634716	36634716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TTI1	NM_014657	exon4	c.C2386T	p.P796S	CTGCTGGTCTTTG	.	100.0	32.0	203.0	0.0	.	94
TUBGCP5	114791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	22848249	22848249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TUBGCP5	NM_052903	exon9	c.G839T	p.G280V	TTTCAGGAGTGAA	.	40.0	11.0	129.0	0.0	.	91
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19483269	19483269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	UBR4	NM_020765	exon41	c.G5911A	p.G1971R	TTAGCCCACAAAC	.	163.0	82.0	352.0	0.0	.	612
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33486394	33486394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	UNC45B	NM_001267052	exon8	c.A809G	p.D270G	CTTCAGACACCAA	.	95.0	22.0	143.0	0.0	.	157
URGCP	55665	ucsc.edu;bcgsc.ca	37	7	43917614	43917614	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	URGCP	NM_001077663	exon6	c.T1448G	p.I483S	TCTTTGATTTTCC	.	109.0	49.0	281.0	2.0	.	94
USP40	55230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234438104	234438104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	USP40	NM_018218	exon11	c.C1559A	p.A520E	TTAGCTGCATCCA	.	24.0	8.0	61.0	0.0	.	455
USP42	84132	ucsc.edu;bcgsc.ca	37	7	6183809	6183809	+	Silent	SNP	C	C	T	rs151011297		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	USP42	NM_032172	exon9	c.C972T	p.T324T	TTTTACCGGTGGA	.	22.0	4.0	75.0	0.0	C|0.999;T|0.001	659
VPS39	23339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42476724	42476724	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	VPS39	NM_015289	exon8	c.709delG	p.V237fs	TGGCCACTGGTAT	.	114.0	41.0	265.0	0.0	.	229
XDH	7498	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	31609400	31609400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	XDH	NM_000379	exon9	c.A673G	p.K225E	GCTGCTTCCGAGG	.	60.0	19.0	172.0	0.0	.	158
XDH	7498	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	31609402	31609402	+	Missense_Mutation	SNP	C	C	G	rs112466737	byfrequency;alternate_allele	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	XDH	NM_000379	exon9	c.G671C	p.R224P	TGCTTCCGAGGAG	.	59.0	20.0	170.0	0.0	C|0.999;T|0.001	158
ZNF420	147923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37582003	37582003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF420	NM_144689	exon4	c.A116G	p.Y39C	AGAACTATAGCAA	.	90.0	21.0	151.0	0.0	.	90
ZNF451	26036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	57011983	57011983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF451	NM_001031623	exon10	c.G1100T	p.C367F	CAGATTGCAATCA	.	84.0	19.0	172.0	0.0	.	93
ZNF488	118738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48370889	48370889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF488	NM_153034	exon2	c.G357T	p.E119D	CCAGGAGAGGGAG	.	75.0	34.0	232.0	0.0	.	91
ZNF711	7552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84526390	84526390	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF711	NM_021998	exon9	c.T1842C	p.T614T	CCATACTAAGGAT	.	85.0	49.0	200.0	1.0	.	134
ZPLD1	131368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	102175049	102175049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZPLD1	NM_175056	exon4	c.C388T	p.P130S	ACAATTCCTGGAG	.	54.0	23.0	140.0	0.0	.	72
ZNF790	388536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37310028	37310029	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	.	.	.	p.S406N	GTGTGAGCTCCAA	.	42.0	12.0	97.0	0.0	.	.