Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACPP	55	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132050504	132050504	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ACPP	NM_001099	exon3	c.A230T	p.Q77L	TGGAGCAGCATTA	.	90.0	27.0	94.0	0.0	.	91
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	175897719	175897719	+	Missense_Mutation	SNP	G	G	A	rs201308805		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ADAM29	NM_001130703	exon4	c.G1043A	p.R348H	CATGTCGTTGTTC	.	173.0	12.0	149.0	0.0	.	729
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175898784	175898784	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ADAM29	NM_001130703	exon4	c.C2108G	p.P703R	GTAAACCAATAAA	.	57.0	17.0	59.0	0.0	.	729
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	72503886	72503886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ADAMTS14	NM_139155	exon14	c.G2132T	p.G711V	GCGGGGGTGACAA	.	161.0	10.0	122.0	0.0	.	232
ADCY3	109	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25059801	25059801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ADCY3	NM_004036	exon8	c.G1647T	p.E549D	CTGCTCCTCGGGC	.	181.0	57.0	109.0	1.0	.	94
ALB	213	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	74281995	74281995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ALB	NM_000477	exon10	c.T1214C	p.V405A	CTCTTGTGGAAGA	.	133.0	29.0	142.0	1.0	.	96
ALKBH5	54890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18110272	18110272	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ALKBH5	NM_017758	exon3	c.A995T	p.D332V	ACCCTGATGCTGC	.	124.0	43.0	72.0	0.0	.	90
ARHGAP23	57636	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	36622415	36622415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ARHGAP23	NM_001199417	exon7	c.C491T	p.S164F	CCTACTCCCAGGA	.	56.0	20.0	30.0	0.0	.	205
ARHGAP32	9743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	128839106	128839106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ARHGAP32	NM_001142685	exon22	c.A5960G	p.H1987R	AGGCTATGACTCC	.	266.0	25.0	198.0	0.0	.	231
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	33397473	33397473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	BBS9	NM_198428	exon16	c.C1559T	p.P520L	GCATTCCGCGAGT	.	46.0	17.0	39.0	0.0	.	230
BIRC2	329	hgsc.bcm.edu;broad.mit.edu	37	11	102221361	102221362	+	In_Frame_Ins	INS	-	-	TAG	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	BIRC2	NM_001256163	exon2	c.776_777insTAG	p.F259delinsFS	TGAGGTTTAGCAT	.	50.0	0.0	32.0	0.0	.	660
BPIFB2	80341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31609598	31609598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_025227	exon15	c.T1328C	p.V443A	TCTTTGTCTATGA	.	113.0	33.0	93.0	0.0	.	.
BRWD3	254065	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	79984393	79984393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	BRWD3	NM_153252	exon14	c.C1244T	p.P415L	CCAGATGGCAAAT	.	279.0	18.0	121.0	1.0	.	134
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201058470	201058470	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CACNA1S	NM_000069	exon6	c.C816T	p.I272I	GTGGGTGATGCCA	.	419.0	170.0	202.0	0.0	.	94
CACNA2D3	55799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	55108222	55108222	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CACNA2D3	NM_018398	exon38	c.T3265G	p.F1089V	ATGCTCTTCTCAA	.	208.0	10.0	118.0	0.0	.	138
CCT4	10575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62107453	62107453	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CCT4	NM_006430	exon4	c.T347G	p.L116R	TCTAAGAGGGAGC	.	117.0	32.0	78.0	0.0	.	92
CD93	22918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23065572	23065572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CD93	NM_012072	exon1	c.G1258A	p.E420K	CGTCCTCCCCGGC	.	220.0	77.0	149.0	0.0	.	153
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63489356	63489356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CDH7	NM_004361	exon5	c.C665T	p.A222V	GAGAGGCTAAAGA	.	176.0	45.0	134.0	0.0	.	94
CEP68	23177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	65305033	65305033	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CEP68	NM_015147	exon5	c.C2039G	p.S680C	ATCAGTCTCTGAC	.	147.0	42.0	103.0	0.0	.	91
CHDC2	286464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	36103589	36103589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_173695	exon5	c.T575C	p.V192A	TACCTGTAGATAA	.	69.0	52.0	58.0	0.0	.	.
CNGB1	1258	ucsc.edu;bcgsc.ca	37	16	57951296	57951296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CNGB1	NM_001297	exon21	c.C2042T	p.P681L	TGGTAGGGGAAGG	.	532.0	139.0	238.0	2.0	.	137
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	125547604	125547604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CNTNAP5	NM_130773	exon18	c.C2875A	p.H959N	CCCGGCCACTGCA	.	332.0	98.0	230.0	2.0	.	524
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130104098	130104098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_153264	exon5	c.A1752G	p.I584M	TAAAATAGAACTG	.	80.0	29.0	76.0	0.0	.	.
CWC25	54883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36958366	36958366	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_017748	exon10	c.G1257A	p.E419E	GTTCTTCTCCAGA	.	118.0	35.0	65.0	0.0	.	.
CWH43	80157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	49046853	49046853	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CWH43	NM_025087	exon14	c.A1854G	p.R618R	GTATCGAGGGCTG	.	92.0	19.0	85.0	0.0	.	93
CYP2E1	1571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	135340926	135340949	+	In_Frame_Del	DEL	CCTGCTGGTGTGGGCGGCCTTCCT	CCTGCTGGTGTGGGCGGCCTTCCT	-	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	CCTGCTGGTGTGGGCGGCCTTCCT	CCTGCTGGTGTGGGCGGCCTTCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CYP2E1	NM_000773	exon1	c.27_50del	p.9_17del	CGTGGCCCTGCTG	.	32.0	8.0	65.0	0.0	.	514
CYP46A1	10858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	100191750	100191750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CYP46A1	NM_006668	exon13	c.G1199A	p.R400Q	TGGGGCGGATGGA	.	151.0	49.0	113.0	0.0	.	90
DCDC1	341019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	31312242	31312242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DCDC1	NM_181807	exon7	c.G912A	p.M304I	CTGCCCCATGCCA	.	161.0	11.0	125.0	0.0	.	91
DCDC5	100506627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	30921967	30921972	+	In_Frame_Del	DEL	GACTTG	GACTTG	-	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	GACTTG	GACTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DCDC5	NM_020869	exon14	c.1896_1901del	p.632_634del	AGCAAAGACTTGT	.	120.0	14.0	149.0	0.0	.	23
DMRTA1	63951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	22447695	22447695	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DMRTA1	NM_022160	exon1	c.G631T	p.E211X	GCTTTCGAAGTTT	.	148.0	42.0	135.0	0.0	.	578
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76440846	76440846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DNAH17	NM_173628	exon71	c.G11368T	p.D3790Y	CACTGTCCAGATT	.	200.0	66.0	118.0	0.0	.	142
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11725907	11725907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DNAH9	NM_001372	exon47	c.G9003T	p.E3001D	CACAGAGGGCATT	.	123.0	51.0	115.0	0.0	.	168
EPB41L2	2037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	131179313	131179313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	EPB41L2	NM_001431	exon19	c.A2981G	p.H994R	TCTTTGTGTACCA	.	193.0	69.0	146.0	0.0	.	91
ESRP1	54845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	95677274	95677274	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ESRP1	NM_001122827	exon8	c.875delC	p.T292fs	TGGGGACCCGGTA	.	276.0	86.0	231.0	0.0	.	94
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108383488	108383488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	EXPH5	NM_015065	exon6	c.C2746A	p.P916T	GCGATGGATCTTT	.	89.0	28.0	77.0	0.0	.	95
FAM105A	54491	broad.mit.edu;bcgsc.ca	37	5	14608988	14608988	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FAM105A	NM_019018	exon7	c.A759C	p.E253D	CACTGAAGTTTAT	.	87.0	5.0	61.0	0.0	.	91
FAM166B	730112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35563264	35563264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_001099951	exon2	c.C185T	p.P62L	ATGGGAGGCAGAA	.	178.0	53.0	134.0	0.0	.	.
FAM46A	55603	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	82459698	82459698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FAM46A	NM_017633	exon3	c.A1043G	p.E348G	CGGTCTTCCAATC	.	159.0	47.0	143.0	1.0	.	90
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92538485	92538485	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FAT3	NM_001008781	exon10	c.T9063C	p.D3021D	CAGTGATGTGAAT	.	230.0	71.0	198.0	0.0	.	73
FFAR2	2867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35940974	35940974	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FFAR2	NM_005306	exon1	c.T358G	p.S120A	AAGCTCTCCCGCC	.	194.0	60.0	157.0	0.0	.	90
FKBP10	60681	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	39975544	39975544	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FKBP10	NM_021939	exon5	c.A810G	p.L270L	CCAGCTAGAGACG	.	152.0	7.0	108.0	0.0	.	227
FLG	2312	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	152279760	152279760	+	Silent	SNP	G	G	A	rs3126073	byfrequency	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FLG	NM_002016	exon3	c.C7602T	p.H2534H	TTCATGGTGACGC	.	361.0	99.0	225.0	0.0	G|0.987;A|0.013	106
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151818957	151818957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	GABRQ	NM_018558	exon7	c.T815C	p.V272A	TGCAAGTCTACTG	.	445.0	171.0	148.0	0.0	.	133
GALR1	2587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	74980684	74980684	+	Silent	SNP	G	G	T	rs199730182	alternate_allele	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	GALR1	NM_001480	exon3	c.G876T	p.A292A	CCTGGCGTACAGC	.	124.0	41.0	76.0	0.0	G|0.999;A|0.001	522
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	147381088	147381088	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	GJA8	NM_005267	exon2	c.1006delC	p.P336fs	GAGGGGCCGCCTG	.	201.0	39.0	115.0	0.0	.	138
GP9	2815	broad.mit.edu;mdanderson.org	37	3	128781113	128781113	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	GP9	NM_000174	exon3	c.T531C	p.D177D	CCTGGATTGAGCC	.	30.0	9.0	31.0	0.0	.	90
HERC2	8924	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	28421656	28421656	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	HERC2	NM_004667	exon63	c.C9604G	p.L3202V	CATTTAGTCTCTC	.	281.0	81.0	209.0	1.0	.	234
HIBCH	26275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191077767	191077767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	HIBCH	NM_014362	exon12	c.T926G	p.I309S	AGTGTGATCTTTA	.	26.0	8.0	34.0	0.0	.	90
HOXD12	3238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	176964643	176964643	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_021193	exon1	c.G114C	p.A38A	GGCCGCGCTTCCC	.	48.0	10.0	39.0	0.0	.	.
IKBIP	121457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	99028193	99028193	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	IKBIP	NM_201612	exon3	c.180-2A>T	.	CAAACCTGGAAAA	.	35.0	15.0	45.0	0.0	.	226
IRAK3	11213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66611016	66611016	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	IRAK3	NM_007199	exon6	c.653+1G>T	.	ACTACTGTGAGTA	.	88.0	28.0	107.0	0.0	.	1379
ISL1	3670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	50685666	50685666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ISL1	NM_002202	exon4	c.C665A	p.P222H	TCAGTCCCCGTGT	.	256.0	84.0	148.0	0.0	.	515
KCTD16	57528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	143853624	143853624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KCTD16	NM_020768	exon4	c.C1234T	p.P412S	CGGTTTCCTGAGA	.	91.0	25.0	92.0	0.0	.	137
KDM5C	8242	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53228047	53228047	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KDM5C	NM_004187	exon16	c.T2267A	p.L756H	GCAGGAAGCTCAT	.	252.0	157.0	149.0	1.0	.	1272
KIAA0232	9778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6864199	6864199	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KIAA0232	NM_014743	exon7	c.T2090A	p.F697Y	GTGCCTTTGAAGA	.	244.0	86.0	188.0	0.0	.	92
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	27772791	27772791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KIAA0556	NM_015202	exon19	c.G3689A	p.G1230D	TCACTGGCCTGGA	.	101.0	8.0	55.0	0.0	.	141
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39879769	39879769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_015038	exon1	c.G3832A	p.E1278K	ACCCCCGAGGAGC	.	145.0	55.0	91.0	0.0	.	.
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113373818	113373818	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KIAA2018	NM_001009899	exon7	c.A6711G	p.L2237L	ATGACCTAGAATA	.	184.0	62.0	128.0	0.0	.	93
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73962088	73962088	+	Silent	SNP	T	T	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KIAA2022	NM_001008537	exon3	c.A2304T	p.S768S	ACTGTTTGATGTC	.	85.0	63.0	62.0	0.0	.	183
MAP3K9	4293	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	71215655	71215655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MAP3K9	NM_033141	exon5	c.T1217C	p.I406T	TCCTCTATGGTGG	.	286.0	94.0	201.0	1.0	.	546
MARC2	54996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220935024	220935024	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_017898	exon3	c.C471T	p.G157G	TAAAGGCAGAGAC	.	269.0	137.0	134.0	0.0	.	.
MEGF6	1953	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3432019	3432019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MEGF6	NM_001409	exon6	c.G677A	p.R226H	TGGCAGCGATGCC	.	197.0	65.0	134.0	1.0	.	90
MEIS3	56917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47910667	47910667	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MEIS3	NM_020160	exon9	c.G1015C	p.E339Q	TCTGCTCCTCCGA	.	79.0	20.0	39.0	0.0	.	90
MIA3	375056	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	222805522	222805522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MIA3	NM_198551	exon5	c.A3185G	p.H1062R	CACTGCATGAAGA	.	433.0	99.0	205.0	1.0	.	98
MIR374B	100126317	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	73438407	73438407	+	RNA	SNP	T	T	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	.	.	.	.	ACAACCTGCTAAG	.	114.0	97.0	64.0	0.0	.	.
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	7892874	7892874	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MTRR	NM_024010	exon11	c.G1486C	p.V496L	CATTTTGTCTTCA	.	213.0	14.0	150.0	0.0	.	91
MYO1C	4641	hgsc.bcm.edu;broad.mit.edu	37	17	1381960	1381960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MYO1C	NM_001080779	exon10	c.C1162T	p.R388C	AAGTGCGGCTGTA	.	145.0	6.0	124.0	0.0	.	90
NOP56	10528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2635207	2635207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	NOP56	NM_006392	exon4	c.C356G	p.A119G	TCATAGCTGAGAT	.	202.0	65.0	184.0	0.0	.	92
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	176721088	176721088	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	NSD1	NM_022455	exon23	c.C6719A	p.S2240X	AGCAATCAACAGG	.	87.0	34.0	79.0	0.0	.	188
NXPH2	11249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	139428566	139428566	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	NXPH2	NM_007226	exon2	c.G721C	p.D241H	TATAATCAACACT	.	90.0	31.0	58.0	0.0	.	72
OR2M7	391196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248487546	248487546	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	OR2M7	NM_001004691	exon1	c.G325C	p.G109R	CGGAGCCAAGCAA	.	414.0	188.0	197.0	1.0	.	70
OR5T1	390155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56043388	56043388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	OR5T1	NM_001004745	exon1	c.A274G	p.K92E	ACTCCAAAAATGT	.	111.0	40.0	79.0	0.0	.	71
PGBD5	79605	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	230468595	230468595	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PGBD5	NM_001258311	exon5	c.A1268G	p.Q423R	CCCTGCTGCACCG	.	293.0	22.0	198.0	0.0	.	93
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9371192	9371192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PLCB4	NM_182797	exon15	c.A1253G	p.Y418C	AACAGTACAAGAT	.	107.0	29.0	94.0	0.0	.	274
PLG	5340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	161139737	161139737	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PLG	NM_000301	exon9	c.A963G	p.E321E	GGATGAAAACTAC	.	233.0	24.0	189.0	0.0	.	94
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121653216	121653216	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PTPRZ1	NM_002851	exon12	c.G4116C	p.G1372G	AAATGGGCATGTT	.	235.0	63.0	196.0	0.0	.	699
RP1L1	94137	broad.mit.edu;bcgsc.ca	37	8	10466903	10466903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	RP1L1	NM_178857	exon4	c.C4705A	p.Q1569K	TGTCCTGGAGGCG	.	46.0	5.0	42.0	0.0	.	139
RXFP3	51289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	33938060	33938060	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	RXFP3	NM_016568	exon1	c.G1215A	p.W405X	GCTGTGGCGCATC	.	115.0	46.0	74.0	0.0	.	91
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237823313	237823313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	RYR2	NM_001035	exon55	c.T8237C	p.I2746T	GAGAAATATATTC	.	63.0	19.0	57.0	0.0	.	158
S100A4	6275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153517143	153517143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	S100A4	NM_002961	exon2	c.C128A	p.P43H	AAGCTGGGCAGCT	.	179.0	53.0	109.0	0.0	.	90
SDC2	6383	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	97621749	97621749	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SDC2	NM_002998	exon5	c.G579A	p.K193K	TCAGAAGGCACCT	.	148.0	41.0	80.0	2.0	.	516
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	3658865	3658865	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SDK1	NM_152744	exon2	c.A452T	p.E151V	GCAGCGAATATAA	.	152.0	47.0	90.0	0.0	.	138
SH3RF1	57630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	170077556	170077556	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SH3RF1	NM_020870	exon3	c.A668C	p.K223T	TTTACCTTTGCAA	.	253.0	92.0	184.0	0.0	.	567
SLC26A4	5172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107342429	107342429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SLC26A4	NM_000441	exon17	c.C1961T	p.P654L	AAGTGCCAATCCA	.	263.0	83.0	212.0	0.0	.	96
SLC27A3	11000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	153750269	153750269	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SLC27A3	NM_024330	exon4	c.G1210C	p.A404P	TTCTCGGCTGGTC	.	267.0	12.0	105.0	0.0	.	91
SLC39A9	55334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69925257	69925257	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SLC39A9	NM_018375	exon7	c.C871G	p.L291V	GCAGCCCTGGTTC	.	143.0	48.0	73.0	0.0	.	90
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144905414	144905414	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SLITRK2	NM_001144005	exon5	c.T1471A	p.F491I	AATATATTTGGGG	.	121.0	38.0	41.0	0.0	.	136
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42159172	42159172	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SPTBN5	NM_016642	exon36	c.C6360T	p.T2120T	GGCCTGGGTGAAG	.	102.0	43.0	78.0	0.0	.	91
TJP2	9414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71840272	71840272	+	Silent	SNP	G	G	T	rs140444730	alternate_allele	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TJP2	NM_001170416	exon6	c.G1098T	p.T366T	CCGAACGGGTCTG	.	121.0	47.0	94.0	0.0	G|0.999;A|0.000	115
TONSL	4796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145668658	145668658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TONSL	NM_013432	exon4	c.C311A	p.T104K	AGCTCCGTGTGGT	.	197.0	61.0	111.0	0.0	.	92
TRIM15	89870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30138285	30138285	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TRIM15	NM_033229	exon5	c.A739C	p.M247L	TGTGAGATGAAGA	.	106.0	29.0	63.0	0.0	.	90
TRPV1	7442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3481004	3481004	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TRPV1	NM_018727	exon11	c.T1601G	p.L534R	TCCTTGAGGTGGC	.	171.0	89.0	149.0	0.0	.	23
TTN-AS1	100506866	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179448634	179448634	+	RNA	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	.	.	.	.	GAGGATCTAAAAC	.	151.0	41.0	102.0	0.0	.	.
TXK	7294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48073678	48073678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TXK	NM_003328	exon14	c.G1371T	p.W457C	AACTTCCCACATT	.	46.0	13.0	25.0	0.0	.	521
U2SURP	23350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	142747437	142747437	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	U2SURP	NM_001080415	exon16	c.1559delA	p.E520fs	AGCAAGAAACAGA	.	248.0	84.0	220.0	0.0	.	71
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43547324	43547324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	UMODL1	NM_173568	exon18	c.C3886A	p.P1296T	CGGGACCCCATCA	.	165.0	41.0	147.0	0.0	.	93
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215960064	215960064	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	USH2A	NM_206933	exon52	c.A10335G	p.S3445S	GGCAGATGAACAC	.	505.0	145.0	235.0	0.0	.	115
WDPCP	51057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	63631475	63631475	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	WDPCP	NM_015910	exon10	c.A1143G	p.S381S	TATTAATGAAGGC	.	97.0	7.0	75.0	0.0	.	91
WDR86	349136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151093228	151093228	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_198285	exon3	c.G360C	p.R120R	CCAGACCCGAGCT	.	84.0	24.0	54.0	0.0	.	.
ZACN	353174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74076379	74076379	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZACN	NM_180990	exon5	c.G418C	p.D140H	CGAGTAGACCAGG	.	245.0	75.0	137.0	0.0	.	90
ZBTB40	9923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22848029	22848029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZBTB40	NM_001083621	exon16	c.C3089A	p.P1030H	ACCACCCTGACGT	.	713.0	223.0	453.0	1.0	.	91
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44797559	44797559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZMIZ2	NM_174929	exon5	c.C665G	p.S222C	GCCCCTCTGGCCT	.	124.0	41.0	91.0	0.0	.	137
ZNF287	57336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	16470785	16470785	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZNF287	NM_020653	exon2	c.A261C	p.Q87H	CAAAATTTGTTCC	.	177.0	10.0	108.0	0.0	.	90
ZSWIM3	140831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44506970	44506970	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZSWIM3	NM_080752	exon2	c.C1773G	p.L591L	GTACCTCCTTGGG	.	358.0	109.0	224.0	0.0	.	92