Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62286109	62286109	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	AHNAK	NM_001620	exon5	c.15780delC	p.P5260fs	AAGAGAGGGTAGC	.	87.0	12.0	101.0	0.0	.	109
ALDOB	229	broad.mit.edu;bcgsc.ca	37	9	104193055	104193056	+	Splice_Site	DEL	CA	CA	-	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	CA	CA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ALDOB	.	.	.	.	TACACTCACCTAC	.	59.0	12.0	49.0	0.0	.	226
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21259995	21259995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	APOB	NM_000384	exon6	c.C670T	p.P224S	CAAGTGGGCTGAT	.	219.0	24.0	204.0	0.0	.	175
ATP5B	506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57037684	57037684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ATP5B	NM_001686	exon4	c.A544G	p.I182V	CCAGAATTTCCTG	.	179.0	33.0	131.0	0.0	.	91
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	117486766	117486766	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ATRNL1	NM_207303	exon27	c.T3804C	p.L1268L	ACTGCTTCGAGAA	.	37.0	10.0	20.0	0.0	.	96
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	121563360	121563360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	C6orf170	NM_152730	exon18	c.C2144T	p.A715V	TTTTTTGCATATC	.	50.0	7.0	43.0	0.0	.	92
CDON	50937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125885319	125885319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CDON	NM_016952	exon7	c.C1015T	p.P339S	GGGCTGGGTTCCC	.	272.0	48.0	164.0	0.0	.	158
CEP152	22995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49054803	49054803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CEP152	NM_014985	exon18	c.G2347A	p.A783T	TCATTGCCTTTAT	.	78.0	9.0	58.0	0.0	.	70
CIB4	130106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26852279	26852279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CIB4	NM_001029881	exon3	c.G185A	p.R62Q	CTCACCCGCAGAG	.	96.0	19.0	77.0	0.0	.	131
CIRBP	1153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1271998	1271998	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CIRBP	NM_001280	exon6	c.450delC	p.G150fs	TGGTGGCTACAGT	.	456.0	86.0	391.0	0.0	.	226
COPG1	22820	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128991183	128991183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	NM_016128	exon20	c.G2083T	p.A695S	GTGCCTGCCCGGA	.	327.0	54.0	256.0	2.0	.	.
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43166474	43166474	+	Silent	SNP	C	C	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CUL9	NM_015089	exon12	c.C2931A	p.P977P	CAGCCCCGGAGGT	.	72.0	12.0	42.0	0.0	.	529
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124335946	124335946	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DMBT1	NM_007329	exon7	c.G315A	p.V105V	GCTGGTGAATGGA	.	120.0	22.0	70.0	0.0	.	494
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57391435	57391435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DNAH12	NM_178504	exon41	c.A6464G	p.H2155R	TTAAAATGGTCCT	.	121.0	26.0	90.0	0.0	.	47
DOCK1	1793	broad.mit.edu;bcgsc.ca	37	10	129183066	129183066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DOCK1	NM_001380	exon38	c.G3757A	p.V1253M	GAGGATGTGTGTG	.	201.0	12.0	170.0	1.0	.	698
DPP6	1804	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154002597	154002597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DPP6	NM_001936	exon1	c.G18T	p.E6D	CAAGGAGCCAAGC	.	92.0	18.0	60.0	1.0	.	652
DPYSL4	10570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	134015481	134015481	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DPYSL4	NM_006426	exon11	c.T1142G	p.V381G	AGTTCGTCGCGGT	.	120.0	11.0	87.0	0.0	.	514
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31851702	31851702	+	Missense_Mutation	SNP	C	C	T	rs146726232		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	EHMT2	NM_006709	exon22	c.G2797A	p.V933M	TGGGCACGTTCTC	.	134.0	17.0	80.0	0.0	C|1.000;T|0.000	91
EPB41L1	2036	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34797717	34797717	+	Missense_Mutation	SNP	G	G	T	rs140677677	by1000genomes;alternate_allele	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	EPB41L1	NM_001258329	exon16	c.G1976T	p.R659L	TCTCCCGGGATCT	.	105.0	26.0	82.0	1.0	G|0.999;A|0.000	93
ETAA1	54465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	67631603	67631603	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ETAA1	NM_019002	exon5	c.G1789C	p.D597H	CAATTAGATAATA	.	81.0	11.0	73.0	0.0	.	156
EXOC5	10640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	57698355	57698355	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	EXOC5	NM_006544	exon11	c.A1017G	p.K339K	AATGGATTTGATA	.	93.0	8.0	72.0	0.0	.	137
FECH	2235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	55226447	55226447	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	FECH	NM_001012515	exon7	c.T752A	p.L251Q	TGGTCCAGTTCCT	.	62.0	11.0	49.0	0.0	.	90
FLOT1	10211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30698721	30698721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	FLOT1	NM_005803	exon9	c.C880G	p.L294V	GCTCCAGCTTGTA	.	53.0	6.0	31.0	0.0	.	90
GABBR2	9568	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101340352	101340352	+	Silent	SNP	G	G	A	rs145095054	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	GABBR2	NM_005458	exon2	c.C324T	p.C108C	GTTGTCGCACTGG	.	104.0	19.0	105.0	1.0	G|1.000;A|0.000	518
GDPD5	81544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75150967	75150967	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	GDPD5	NM_030792	exon15	c.C1513T	p.L505L	AGACCAGGTCGGC	.	163.0	27.0	107.0	0.0	.	91
GJD2	57369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35044889	35044889	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	GJD2	NM_020660	exon2	c.C756T	p.V252V	TAGAAAGACAGTC	.	276.0	37.0	213.0	0.0	.	90
IFI16	3428	hgsc.bcm.edu;bcgsc.ca	37	1	159002321	159002321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	IFI16	NM_005531	exon7	c.A1169G	p.K390R	TAAAGAAAAAAAC	.	41.0	4.0	36.0	0.0	.	91
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	76731919	76731919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	IMPG1	NM_001563	exon6	c.C580A	p.L194I	GCCCAAGTGAGAC	.	65.0	12.0	63.0	0.0	.	93
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26816709	26816709	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ITPR2	NM_002223	exon15	c.T1622G	p.L541R	TCCCCCAGATCTT	.	94.0	13.0	58.0	0.0	.	542
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	35183471	35183471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ITSN1	NM_001001132	exon21	c.G2512T	p.V838L	TTGGCAGTAACCT	.	179.0	36.0	146.0	0.0	.	94
KRT33A	3883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39502874	39502874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	KRT33A	NM_004138	exon6	c.G923A	p.S308N	TGGGAGCTGTAGC	.	87.0	23.0	61.0	0.0	.	90
KRT36	8689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	39643887	39643887	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	KRT36	NM_003771	exon4	c.C802T	p.Q268X	CGTACTGGCATCT	.	209.0	27.0	137.0	0.0	.	90
LPA	4018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	160966524	160966524	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	LPA	NM_005577	exon34	c.C5346T	p.C1782C	TGTGTAGCACCAG	.	133.0	6.0	107.0	0.0	.	74
LPGAT1	9926	hgsc.bcm.edu;broad.mit.edu	37	1	211952355	211952355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	LPGAT1	NM_014873	exon6	c.A759G	p.I253M	TGTATCTATTATC	.	80.0	4.0	60.0	0.0	.	92
LRRC58	116064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120067725	120067725	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	NM_001099678	exon1	c.C366A	p.L122L	CACCTGGAGGCTG	.	73.0	14.0	31.0	0.0	.	.
LRRC8E	80131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7964686	7964686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	LRRC8E	NM_001268284	exon4	c.C1279T	p.P427S	ATGCTGCCGGGTC	.	55.0	9.0	27.0	0.0	.	92
MIR302A	407028	ucsc.edu;mdanderson.org	37	4	113569387	113569387	+	RNA	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	.	.	.	.	GCAAGTACATCCA	.	157.0	29.0	148.0	0.0	.	.
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36219035	36219035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	MLL4	NM_014727	exon19	c.G4534A	p.D1512N	GCCCACGACCCCA	.	112.0	16.0	102.0	0.0	.	697
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	13126733	13126733	+	Silent	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	MPDZ	NM_003829	exon33	c.T4503C	p.D1501D	GAGTGTATCTTCT	.	152.0	26.0	91.0	0.0	.	231
NUBPL	80224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	32257020	32257020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	NUBPL	NM_025152	exon7	c.A548G	p.D183G	TTGTAGACATGCC	.	75.0	13.0	50.0	0.0	.	226
NUP98	4928	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	3735109	3735109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	NUP98	NM_005387	exon19	c.C2567T	p.S856L	TTCCTTGAAACTG	.	147.0	20.0	117.0	1.0	.	703
PCDHB4	56131	hgsc.bcm.edu;mdanderson.org	37	5	140503231	140503231	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	PCDHB4	NM_018938	exon1	c.C1651T	p.L551L	CTGGTGCTGGACA	.	19.0	4.0	8.0	0.0	.	93
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	208269429	208269429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	PLXNA2	NM_025179	exon8	c.G1927T	p.G643W	TCTTCCCTGTCTC	.	179.0	17.0	109.0	0.0	.	92
PMS1	5378	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190742031	190742031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	PMS1	NM_000534	exon13	c.A2668G	p.M890V	TTACCCATGTACT	.	152.0	16.0	111.0	1.0	.	1396
PPP5C	5536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46857241	46857241	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	PPP5C	NM_006247	exon2	c.G358C	p.E120Q	GACTACGAGACGG	.	128.0	24.0	62.0	0.0	.	227
RAB4A	5867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	229434759	229434759	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	RAB4A	NM_004578	exon6	c.G481T	p.E161X	ACAGGGGAGAATG	.	155.0	23.0	85.0	0.0	.	182
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4277393	4277393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SDK1	NM_152744	exon42	c.A6107G	p.K2036R	AGAATAAGAAGTA	.	287.0	51.0	205.0	0.0	.	138
SLC10A7	84068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	147179851	147179851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SLC10A7	NM_001029998	exon11	c.G986A	p.R329K	TTCTGCCTTGATA	.	97.0	12.0	64.0	0.0	.	22
SLC22A5	6584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131721132	131721132	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SLC22A5	NM_003060	exon4	c.C765G	p.D255E	CCGAGACTGGCGG	.	274.0	78.0	151.0	0.0	.	90
SLC5A5	6528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18001723	18001723	+	Silent	SNP	G	G	A	rs149937279	alternate_allele	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SLC5A5	NM_000453	exon14	c.G1680A	p.P560P	GGCCCCGGGATTG	.	78.0	20.0	64.0	0.0	G|1.000;C|0.000	93
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24861041	24861041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SPATA13	NM_001166271	exon7	c.A2620G	p.M874V	GAGATCATGGACA	.	140.0	27.0	112.0	0.0	.	229
SRRT	51593	broad.mit.edu;bcgsc.ca	37	7	100473251	100473274	+	In_Frame_Del	DEL	GACAAGTTCAGAAGAGAGCGCAGC	GACAAGTTCAGAAGAGAGCGCAGC	-	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	GACAAGTTCAGAAGAGAGCGCAGC	GACAAGTTCAGAAGAGAGCGCAGC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SRRT	NM_001128853	exon2	c.40_63del	p.14_21del	CGCAGGGACAAGT	.	161.0	9.0	121.0	0.0	.	92
TPH2	121278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72416191	72416191	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	TPH2	NM_173353	exon9	c.A1081T	p.T361S	TTCTTCACAATCG	.	58.0	8.0	67.0	0.0	.	93
TUBB4A	10382	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	6495513	6495513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	NM_006087	exon4	c.G997A	p.V333M	TCTGCACGCTCAG	.	76.0	8.0	61.0	0.0	.	.
UBA7	7318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49849633	49849633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	UBA7	NM_003335	exon7	c.G701T	p.G234V	AGGGACCCATCCT	.	196.0	32.0	165.0	0.0	.	228
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49321560	49321560	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	USP4	NM_003363	exon19	c.C2400T	p.P800P	ACAGTTGGGACAG	.	253.0	37.0	202.0	0.0	.	660
VWC2	375567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	49951654	49951654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	VWC2	NM_198570	exon4	c.C851T	p.A284V	AAACCGCGGTGAT	.	143.0	22.0	141.0	0.0	.	514
ZBTB45	84878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	59029036	59029036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ZBTB45	NM_032792	exon2	c.C5T	p.A2V	GCAGCCGCCATCT	.	127.0	6.0	94.0	0.0	.	90
ZFPM2	23414	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106814199	106814199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ZFPM2	NM_012082	exon8	c.C1889T	p.T630I	CTTCCACTGTCTT	.	209.0	28.0	106.0	1.0	.	139
ZNF337	26152	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25655887	25655887	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ZNF337	NM_015655	exon5	c.C2037G	p.H679Q	CTTTGAGTGTATC	.	179.0	42.0	148.0	1.0	.	90
THRSP	7069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	77774945	77774946	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	.	.	.	p.R7G	AACCAAGCGTTAC	.	111.0	15.0	89.0	0.0	.	.