Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
A4GNT	51146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	137843669	137843669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	A4GNT	NM_016161	exon3	c.C460T	p.R154C	CCAGGCGGGATGC	.	137.0	21.0	138.0	0.0	.	90
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	57216008	57216008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	AASDH	NM_181806	exon11	c.A1909G	p.T637A	TGAATGTCACATC	.	137.0	19.0	153.0	0.0	.	94
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94578571	94578571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ABCA4	NM_000350	exon2	c.A118G	p.I40V	ACCAGATCAAGAC	.	216.0	29.0	202.0	0.0	.	162
ACAD11	84129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132297694	132297694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ACAD11	NM_032169	exon15	c.A1720G	p.M574V	TGTTCATGGGAAC	.	67.0	10.0	79.0	0.0	.	91
ADH5	128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	100003145	100003146	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ADH5	NM_000671	exon3	c.237_238insG	p.G79fs	AGTAACTCCCTCA	.	191.0	29.0	192.0	0.0	.	227
AGAP2	116986	broad.mit.edu;bcgsc.ca	37	12	58121178	58121178	+	Silent	SNP	C	C	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	AGAP2	NM_001122772	exon17	c.G3045C	p.T1015T	GCCTCGCGTGTCG	.	138.0	27.0	107.0	1.0	.	716
ALX4	60529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	44289129	44289129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ALX4	NM_021926	exon3	c.G821A	p.R274H	CCAAAACGCTCCC	.	206.0	33.0	107.0	0.0	.	90
AMER1	139285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	63412208	63412208	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_152424	exon2	c.A959T	p.K320I	AAGCTTTTCAGGG	.	58.0	6.0	45.0	0.0	.	.
ANKRD26	22852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27356183	27356183	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ANKRD26	NM_014915	exon10	c.A1110G	p.K370K	ATTTTCTTTTTTT	.	25.0	4.0	45.0	0.0	.	138
ARHGEF26	26084	hgsc.bcm.edu;bcgsc.ca	37	3	153840488	153840488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ARHGEF26	NM_001251962	exon2	c.G707T	p.S236I	TTTTGAGTACAAA	.	79.0	4.0	79.0	0.0	.	47
ASAP2	8853	broad.mit.edu;mdanderson.org	37	2	9347355	9347355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ASAP2	NM_001135191	exon1	c.A122T	p.E41V	CCATCGAGGAGGT	.	49.0	8.0	32.0	0.0	.	90
ASCC2	84164	broad.mit.edu;bcgsc.ca	37	22	30202864	30202865	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	GA	GA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ASCC2	NM_032204	exon10	c.937_938del	p.313_313del	GAATGGGAGAGCC	.	63.0	8.0	87.0	0.0	.	90
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176853524	176853524	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ASTN1	NM_004319	exon19	c.C3177A	p.L1059L	TTGACGGAGGAGG	.	196.0	28.0	175.0	0.0	.	319
ATP1B3	483	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	141632520	141632520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ATP1B3	NM_001679	exon4	c.C373A	p.L125I	AAGAACCTCACAG	.	116.0	18.0	102.0	0.0	.	90
ATP4A	495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36048727	36048727	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ATP4A	NM_000704	exon11	c.A1523T	p.D508V	CGCGGGTCCTCCA	.	120.0	15.0	87.0	0.0	.	91
C12orf74	338809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93100546	93100546	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	C12orf74	NM_001037671	exon2	c.A139T	p.T47S	ATCTCCACCTCGC	.	113.0	15.0	109.0	0.0	.	90
C17orf49	124944	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6920313	6920313	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	C17orf49	NM_174893	exon5	c.A494C	p.K165T	CAGCTAAGAAACT	.	53.0	7.0	63.0	2.0	.	135
C1QA	712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22965803	22965803	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	C1QA	NM_015991	exon3	c.A641T	p.Q214L	GTGACCAGGTCTG	.	123.0	23.0	95.0	0.0	.	90
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1254427	1254427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CACNA1H	NM_021098	exon10	c.C2420T	p.T807M	TCAACACGCTGAG	.	307.0	59.0	192.0	0.0	.	67
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156303388	156303388	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CCT3	NM_005998	exon5	c.G254C	p.R85P	TGGGTCCGGCTAA	.	55.0	6.0	52.0	0.0	.	92
CD209	30835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7807945	7807945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CD209	NM_021155	exon7	c.C1195A	p.P399T	GGTTTGGGGTGGC	.	61.0	11.0	66.0	0.0	.	91
CDYL	9425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4892439	4892439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CDYL	NM_004824	exon2	c.C517A	p.Q173K	CAGGGTCAGGAGG	.	126.0	24.0	113.0	0.0	.	90
CELA3A	10136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22336295	22336295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CELA3A	NM_005747	exon7	c.T740C	p.I247T	ACTTCATCTGGAA	.	375.0	61.0	326.0	0.0	.	45
CEP89	84902	hgsc.bcm.edu;bcgsc.ca	37	19	33444519	33444519	+	Splice_Site	SNP	A	A	G	rs146108457	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CEP89	NM_032816	exon5	c.492+2T>C	.	GAAAACACCTGAT	.	41.0	6.0	45.0	0.0	A|0.924;G|0.076	94
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240071769	240071769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CHRM3	NM_000740	exon5	c.A1018G	p.N340D	AACAACAATGATG	.	185.0	26.0	167.0	0.0	.	95
CTCF	10664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67655390	67655390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CTCF	NM_006565	exon7	c.A1253G	p.Q418R	TTACCCAAAGTGG	.	122.0	18.0	118.0	0.0	.	91
DAO	1610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109283310	109283310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DAO	NM_001917	exon4	c.C375A	p.F125L	TATGTTCCCAGAT	.	125.0	11.0	97.0	0.0	.	92
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	6643111	6643111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DCHS1	NM_003737	exon21	c.C9796T	p.P3266S	CAACGGGTGAGCG	.	126.0	14.0	102.0	0.0	.	73
DCTN2	10540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57929270	57929270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DCTN2	NM_001261412	exon4	c.G267T	p.E89D	AACCATCTCATAT	.	87.0	11.0	82.0	0.0	.	23
DDX18	8886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118575029	118575029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DDX18	NM_006773	exon2	c.A95G	p.N32S	CCTCAAATCTGAC	.	23.0	4.0	26.0	0.0	.	290
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124402197	124402197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DNAH10	NM_207437	exon63	c.A10715G	p.E3572G	AGCTGGAGGAGCA	.	166.0	28.0	110.0	0.0	.	95
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20981196	20981196	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DNAH3	NM_017539	exon52	c.A8376G	p.P2792P	AGGGCCTGGTGGG	.	143.0	26.0	109.0	0.0	.	167
DPPA2	151871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	109028174	109028174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DPPA2	NM_138815	exon4	c.A185G	p.H62R	AGTAGATGACCTA	.	111.0	18.0	73.0	0.0	.	93
EFCAB12	90288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129147317	129147317	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_207307	exon1	c.T15C	p.Y5Y	CGCTTCATAGTCG	.	268.0	38.0	244.0	1.0	.	.
EFHA2	286097	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	16961997	16961997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EFHA2	NM_181723	exon10	c.A1082G	p.Y361C	ATTTTTATAGGTG	.	64.0	16.0	63.0	1.0	.	91
EFNA3	1944	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155057577	155057577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EFNA3	NM_004952	exon2	c.G139A	p.E47K	CGGCGAGAGGGCT	.	137.0	27.0	127.0	0.0	.	90
EHD2	30846	broad.mit.edu;mdanderson.org	37	19	48229309	48229309	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EHD2	NM_014601	exon4	c.A743T	p.E248V	CGCCCGAGGTGCT	.	52.0	8.0	51.0	0.0	.	92
EMR2	30817	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14865791	14865791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EMR2	NM_013447	exon14	c.T1565C	p.V522A	ATGAGGACGGCAA	.	221.0	33.0	182.0	1.0	.	524
EPHA8	2046	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22902826	22902826	+	Silent	SNP	C	C	T	rs145476843	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EPHA8	NM_020526	exon3	c.C276T	p.D92D	CCGAGACGGCGCC	.	406.0	82.0	310.0	1.0	C|1.000;T|0.000	1380
ERC2	26059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56468548	56468548	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ERC2	NM_015576	exon2	c.T488A	p.L163H	CGGAGGAGGTCAT	.	153.0	20.0	137.0	1.0	.	24
ESRP1	54845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95676928	95676928	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ESRP1	NM_001122827	exon7	c.C648T	p.S216S	CAGCAGCAAGATG	.	190.0	18.0	137.0	0.0	.	94
EXT2	2132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	44255728	44255728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EXT2	NM_000401	exon12	c.A1969G	p.M657V	GCTCATATGAACT	.	195.0	31.0	160.0	0.0	.	524
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72234031	72234031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EYA1	NM_172059	exon5	c.A356G	p.Q119R	GCTTGTTGCATTC	.	335.0	38.0	288.0	0.0	.	652
FAM196B	100131897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169309899	169309899	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_001129891	exon2	c.A1004G	p.N335S	TGGTGATTGTTAC	.	165.0	23.0	146.0	0.0	.	.
FAM45B	55855	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	129629187	129629187	+	RNA	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FAM45B	.	.	.	.	CTGATCGAAAAGG	.	185.0	57.0	197.0	0.0	.	63
FBRSL1	57666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133102386	133102386	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FBRSL1	NM_001142641	exon3	c.A556T	p.S186C	GCCACCAGCTCCC	.	185.0	27.0	147.0	0.0	.	70
FBXO24	26261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100192090	100192090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FBXO24	NM_012172	exon6	c.A992G	p.K331R	TGAGGAAGGTGTC	.	127.0	15.0	110.0	0.0	.	229
FSIP1	161835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40031879	40031879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FSIP1	NM_152597	exon7	c.A767G	p.K256R	TTTCTCTTAATAA	.	25.0	6.0	30.0	0.0	.	517
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	128118132	128118132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GAPVD1	NM_015635	exon24	c.G4048A	p.D1350N	CTTCGCGACCAGT	.	221.0	35.0	214.0	0.0	.	93
GLYATL2	219970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58602018	58602018	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GLYATL2	NM_145016	exon6	c.T769G	p.Y257D	GGAAATAAAATGG	.	75.0	15.0	74.0	0.0	.	92
GPR112	139378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135431901	135431901	+	Silent	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GPR112	NM_153834	exon6	c.T6036A	p.S2012S	CTTATCTAGTCTC	.	79.0	22.0	65.0	1.0	.	183
GUCY1B3	2983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156696144	156696144	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_000857	exon3	c.A102T	p.E34D	TGAAGAAGGACAG	.	30.0	4.0	41.0	0.0	.	.
GUCY1B3	2983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156726268	156726268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_000857	exon13	c.C1723A	p.P575T	ATGTCTCCAGAAA	.	186.0	32.0	169.0	0.0	.	.
HACL1	26061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	15613198	15613198	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HACL1	NM_012260	exon12	c.A1072T	p.K358X	TGCTCTTCATTTT	.	47.0	7.0	62.0	0.0	.	90
HHAT	55733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210847644	210847644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HHAT	NM_001170587	exon11	c.A1408T	p.T470S	TGGGTGACCCTCT	.	107.0	20.0	92.0	0.0	.	92
HOXB7	3217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	46685442	46685442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HOXB7	NM_004502	exon2	c.G416A	p.R139Q	CGGCCTCGTTTGC	.	85.0	10.0	74.0	0.0	.	90
HTR1A	3350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	63256701	63256701	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HTR1A	NM_000524	exon1	c.G846A	p.R282R	ACCTTGCCTCACC	.	132.0	19.0	105.0	0.0	.	94
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3179109	3179109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HTT	NM_002111	exon34	c.G4458T	p.Q1486H	GGGCCAGTTCAGG	.	55.0	10.0	58.0	0.0	.	281
IGF2BP1	10642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47119724	47119724	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IGF2BP1	NM_006546	exon9	c.T1062C	p.D354D	GAATGATGTGGCT	.	249.0	46.0	227.0	2.0	.	226
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201184848	201184848	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IGFN1	NM_001164586	exon15	c.G9177T	p.G3059G	CCTGGGGGATGGC	.	213.0	37.0	193.0	0.0	.	71
IL1RAPL1	11141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	29973747	29973747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IL1RAPL1	NM_014271	exon11	c.C1901T	p.P634L	TACCTCCTACCGG	.	118.0	32.0	77.0	0.0	.	134
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	104999216	104999216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IL1RAPL2	NM_017416	exon10	c.A1238G	p.Q413R	TGGACCAAGATAC	.	169.0	40.0	144.0	0.0	.	194
ILDR1	286676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	121712594	121712594	+	Silent	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ILDR1	NM_001199799	exon7	c.A1002T	p.P334P	GATCAGTGGGGGC	.	201.0	21.0	185.0	0.0	.	91
ITGB1	3688	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	33217025	33217025	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ITGB1	NM_002211	exon5	c.A544C	p.I182L	TACCAATTCTGAA	.	55.0	4.0	65.0	0.0	.	1084
ITPRIPL1	150771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96992598	96992598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ITPRIPL1	NM_178495	exon1	c.A253G	p.T85A	TTCTGGACAGGAG	.	138.0	18.0	130.0	0.0	.	69
JAG1	182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	10644621	10644621	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	JAG1	NM_000214	exon3	c.T429C	p.N143N	GGTGTCATTACTG	.	193.0	17.0	164.0	0.0	.	1273
JUN	3725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	59248012	59248012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	JUN	NM_002228	exon1	c.C731T	p.P244L	TCGATGGGGGACA	.	81.0	19.0	69.0	0.0	.	1270
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10602442	10602442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KEAP1	NM_012289	exon3	c.G1136T	p.G379V	TTCCTGCCGCCCA	.	112.0	14.0	75.0	0.0	.	637
KIAA1191	57179	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	175774612	175774612	+	Silent	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KIAA1191	NM_020444	exon9	c.T909A	p.T303T	GAAGCCAGTGGGT	.	30.0	4.0	27.0	0.0	.	91
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138564336	138564336	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KIAA1549	NM_020910	exon12	c.T4293C	p.D1431D	CGTCTTATCTCCT	.	27.0	5.0	26.0	0.0	.	369
KIF6	221458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39607439	39607439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KIF6	NM_145027	exon4	c.G346A	p.D116N	CTCTGTCACTGTA	.	147.0	18.0	131.0	0.0	.	713
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	88452294	88452294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	LDB3	NM_001171610	exon8	c.C1066A	p.Q356K	ACAGTGCAAGACC	.	133.0	6.0	122.0	0.0	.	92
LHFPL3	375612	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	103969504	103969504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_199000	exon1	c.A277G	p.S93G	AGGGGCAGCTTCA	.	63.0	7.0	73.0	1.0	.	.
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	40360391	40360391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	LRFN2	NM_020737	exon3	c.T1661C	p.M554T	CGCACCATGAGGA	.	95.0	11.0	85.0	0.0	.	93
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356745	42356745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	LRFN5	NM_152447	exon3	c.T917C	p.L306P	CAACACTGAGGTG	.	121.0	15.0	130.0	0.0	.	97
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3298983	3298983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MEFV	NM_000243	exon4	c.G1282A	p.E428K	GATGCTCCAGCTG	.	72.0	17.0	55.0	0.0	.	228
MSH5	4439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31726633	31726633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MSH5	NM_025259	exon15	c.G1358A	p.S453N	CATGCAGTGTCAT	.	217.0	29.0	161.0	0.0	.	661
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9073366	9073366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MUC16	NM_024690	exon3	c.C14080T	p.L4694F	AGGCAAGTGGAAT	.	188.0	37.0	187.0	0.0	.	566
MUC20	200958	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	195452975	195452978	+	Frame_Shift_Del	DEL	CCCA	CCCA	-	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	CCCA	CCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_152673	exon3	c.988_991del	p.330_331del	CCACTCCCCACTA	.	455.0	44.0	416.0	0.0	.	.
MUC7	4589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71346647	71346647	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	MUC7,NS,carcinoma,+1	MUC7	NM_001145007	exon4	c.C186T	p.S62S	AAAGTCCTATAAA	.	161.0	30.0	161.0	0.0	.	93
NAV3	89795	broad.mit.edu;ucsc.edu	37	12	78452777	78452777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NAV3	NM_014903	exon12	c.T2518C	p.Y840H	TTCAGGTACATGA	.	57.0	8.0	60.0	1.0	.	279
NDUFAF7	55471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37474750	37474750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_144736	exon9	c.T1088C	p.M363T	AAAATATGGGTAT	.	110.0	17.0	98.0	0.0	.	.
NEK9	91754	hgsc.bcm.edu;bcgsc.ca	37	14	75567697	75567697	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NEK9	NM_033116	exon16	c.A2000C	p.D667A	TCACCATCAGTGG	.	60.0	5.0	80.0	0.0	.	359
NFKBID	84807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36387302	36387302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NFKBID	NM_139239	exon7	c.G397A	p.V133I	AGAGAACTCCTGG	.	106.0	9.0	82.0	0.0	.	90
NOL8	55035	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	95077366	95077366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NOL8	NM_017948	exon7	c.C1541T	p.T514I	TGGGTGGTGGTTT	.	84.0	8.0	99.0	0.0	.	23
NPHP4	261734	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	5964775	5964775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NPHP4	NM_015102	exon16	c.G2045A	p.R682Q	TGCAGTCGTGGCG	.	297.0	33.0	210.0	2.0	.	515
NR1H3	10062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47282864	47282864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NR1H3	NM_001251934	exon5	c.C590T	p.S197F	CCACATCCTTGCC	.	210.0	32.0	165.0	0.0	.	228
OR6C4	341418	hgsc.bcm.edu;broad.mit.edu	37	12	55945800	55945800	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	OR6C4	NM_001005494	exon1	c.G790T	p.E264X	GCAAAAGAAGGAG	.	85.0	6.0	104.0	0.0	.	68
OR6C68	403284	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	55886941	55886941	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	OR6C68	NM_001005519	exon1	c.A780G	p.P260P	CAAGCCATCTGCA	.	76.0	15.0	109.0	0.0	.	69
OSCAR	126014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54600387	54600387	+	Silent	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	OSCAR	NM_130771	exon4	c.T147A	p.P49P	GACCCCAGGGGTC	.	93.0	16.0	95.0	0.0	.	68
PAPD4	167153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78940987	78940987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PAPD4	NM_173797	exon9	c.C793T	p.P265S	AAAGTGCCAATTG	.	184.0	24.0	183.0	0.0	.	69
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55581783	55581783	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PCDH15	NM_001142763	exon35	c.T5724C	p.S1908S	TATTTGACTGTAC	.	71.0	8.0	98.0	0.0	.	193
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140175547	140175547	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PCDHA2	NM_031495	exon1	c.A998T	p.H333L	CAGGACATTGTAA	.	207.0	31.0	182.0	0.0	.	94
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56139664	56139664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PCK1	NM_002591	exon8	c.C1313T	p.P438L	GTAGACCTGCTGG	.	40.0	7.0	30.0	0.0	.	227
PHKG2	5261	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	30760208	30760208	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PHKG2	NM_001172432	exon2	c.A67T	p.K23X	TACCAGAAGTACG	.	214.0	33.0	186.0	0.0	.	334
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	18279669	18279669	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PIK3R2	NM_005027	exon15	c.G1942T	p.E648X	ATCCGCGAGAGCA	.	217.0	30.0	165.0	0.0	.	1311
PIP4K2B	8396	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	36955561	36955561	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PIP4K2B	NM_003559	exon1	c.C117T	p.S39S	CGGCTCGCTGGCC	.	74.0	17.0	58.0	0.0	.	266
PLA2G16	11145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63365558	63365558	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PLA2G16	NM_001128203	exon3	c.A93G	p.G31G	CACATATCCATCG	.	271.0	42.0	268.0	0.0	.	91
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186909157	186909157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PLA2G4A	NM_024420	exon10	c.G964T	p.A322S	AATACTGCACAAT	.	70.0	14.0	73.0	0.0	.	721
PLSCR5	389158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	146318107	146318107	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_001085420	exon2	c.A157T	p.S53C	GGAGACTGACTGT	.	46.0	9.0	44.0	0.0	.	.
PODXL	5420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131195912	131195912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PODXL	NM_001018111	exon2	c.A381C	p.K127N	TGCACTTTTTGTG	.	288.0	45.0	213.0	0.0	.	136
PSMC1	5700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	90730490	90730490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PSMC1	NM_002802	exon6	c.G571A	p.D191N	GGGTTGGACAACC	.	86.0	12.0	91.0	0.0	.	90
PSMD1	5707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231927267	231927267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PSMD1	NM_002807	exon4	c.C182T	p.A61V	TTGCAGCCTTAGT	.	53.0	6.0	48.0	0.0	.	92
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	40980734	40980734	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PTPRT	NM_007050	exon10	c.C1752A	p.T584T	AATTTTGGTGGCA	.	139.0	10.0	102.0	0.0	.	664
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52339318	52339318	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PXDNL	NM_144651	exon13	c.C1526G	p.A509G	GCAAGAGCTGTGG	.	53.0	9.0	33.0	0.0	.	70
RAI14	26064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34823722	34823722	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RAI14	NM_001145525	exon17	c.A1784C	p.K595T	TGAATAAGGAGAA	.	151.0	30.0	121.0	0.0	.	91
RANGAP1	5905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41652812	41652812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RANGAP1	NM_002883	exon8	c.G791A	p.R264Q	ACCTGCCGCAAGG	.	74.0	10.0	64.0	0.0	.	90
RBBP5	5929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205065957	205065957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RBBP5	NM_005057	exon12	c.G1249A	p.G417S	GGGGGCCGTAAGG	.	124.0	22.0	111.0	0.0	.	226
RBPJ	3516	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	26426076	26426076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RBPJ	NM_005349	exon7	c.G648T	p.Q216H	ACAGCAGTGGGGA	.	83.0	7.0	65.0	0.0	.	659
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92731170	92731170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SAMD9	NM_001193307	exon2	c.A4241G	p.Q1414R	CGAAGCTGATCTT	.	120.0	17.0	146.0	0.0	.	140
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144892681	144892681	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SCRIB	NM_015356	exon13	c.C1498G	p.P500A	AGTCTGGCTGGCA	.	151.0	20.0	109.0	0.0	.	228
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	71334929	71334929	+	Missense_Mutation	SNP	C	C	T	rs199923333		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SDK2	NM_001144952	exon45	c.G6316A	p.D2106N	CCGAGTCGCTCTC	.	281.0	22.0	227.0	0.0	C|0.999;T|0.000	24
SH3GL2	6456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17789515	17789515	+	Silent	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SH3GL2	NM_003026	exon6	c.T591A	p.A197A	AATTGCTGAGTCA	.	91.0	19.0	66.0	0.0	.	91
SIAH2	6478	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	150460068	150460068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SIAH2	NM_005067	exon2	c.A835G	p.T279A	GGGGCGTGGCCTC	.	366.0	50.0	338.0	2.0	.	227
SLC12A3	6559	broad.mit.edu;ucsc.edu	37	16	56920369	56920369	+	Silent	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLC12A3	NM_001126108	exon16	c.C2019A	p.I673I	GATGATCTGTGGC	.	89.0	12.0	61.0	1.0	.	155
SLC43A2	124935	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1480000	1480000	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLC43A2	NM_152346	exon13	c.A1439T	p.Q480L	CCGAACTGGGTGG	.	78.0	18.0	63.0	1.0	.	91
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	481703	481703	+	Silent	SNP	G	G	A	rs200474984		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLC9A3	NM_004174	exon9	c.C1494T	p.I498I	GTGCCCGATCTGT	.	141.0	13.0	129.0	0.0	G|0.999;A|0.001	90
SLC9A9	285195	broad.mit.edu;ucsc.edu	37	3	143292967	143292967	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLC9A9	NM_173653	exon8	c.G963A	p.W321X	GGCACTCCAAGAA	.	438.0	68.0	382.0	1.0	.	229
SLC9C2	284525	broad.mit.edu;mdanderson.org	37	1	173478714	173478714	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_178527	exon24	c.T3032G	p.I1011S	TCATCAATAAGAC	.	128.0	18.0	123.0	1.0	.	.
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	88328465	88328465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLITRK5	NM_015567	exon2	c.C822A	p.D274E	AAGGGACTTGGAC	.	121.0	17.0	93.0	0.0	.	94
SOCS5	9655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	46986955	46986955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	SOCS5,NS,carcinoma,0	SOCS5	NM_144949	exon2	c.G1286A	p.R429Q	ATGCCCGAATTGA	.	216.0	25.0	245.0	0.0	.	659
SPOCK3	50859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	168155168	168155168	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SPOCK3	NM_016950	exon2	c.A157T	p.K53X	CTTCCTTGTCATA	.	141.0	27.0	141.0	0.0	.	136
STARD6	147323	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	51851176	51851176	+	Silent	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	STARD6	NM_139171	exon6	c.A549C	p.I183I	TTCAATTATTGAT	.	118.0	10.0	111.0	0.0	.	91
TBC1D5	9779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	17349528	17349528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TBC1D5	NM_014744	exon14	c.T1094C	p.V365A	TAATCTACTAAAC	.	190.0	38.0	224.0	0.0	.	91
TCF12	6938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	57212181	57212181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TCF12	NM_207036	exon2	c.A70G	p.S24G	GACTTCAGTGCGG	.	143.0	20.0	149.0	0.0	.	1085
TJP2	9414	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	71836182	71836182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TJP2	NM_001170416	exon5	c.G815A	p.R272H	GCAGCCGCGGCCG	.	72.0	6.0	58.0	0.0	.	115
TLX3	30012	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	170738472	170738472	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TLX3	NM_021025	exon3	c.C745T	p.Q249X	GCCTTCCAAAAGA	.	322.0	38.0	242.0	0.0	.	658
TMEM14C	51522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10728899	10728899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TMEM14C	NM_001165258	exon5	c.A226G	p.M76V	GGCATTATGGGAA	.	79.0	12.0	73.0	0.0	.	90
TNFRSF21	27242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	47251729	47251729	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TNFRSF21	NM_014452	exon3	c.A1188T	p.K396N	CATGGATTTCTTC	.	124.0	14.0	114.0	0.0	.	227
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7576928	7576928	+	Splice_Site	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	TP53,NS,carcinoma,0	TP53	NM_000546	exon10	c.920-2A>G	.	CAGTGCTAGGAAA	.	193.0	38.0	173.0	1.0	.	70225
TSPAN31	6302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	58141073	58141073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TSPAN31	NM_005981	exon6	c.A633G	p.X211W	TCTATGAGACTTT	.	68.0	7.0	59.0	0.0	.	446
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179438598	179438598	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TTN	NM_001267550	exon326	c.G72261A	p.L24087L	GTTTACCAGATTA	.	127.0	14.0	123.0	0.0	.	636
WDR66	144406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122396358	122396358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	WDR66	NM_001178003	exon12	c.C1911A	p.N637K	TGAAAACAAACAA	.	139.0	17.0	111.0	0.0	.	92
WDR92	116143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	68365900	68365900	+	Missense_Mutation	SNP	G	G	A	rs35021866		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	WDR92	NM_001256476	exon5	c.C607T	p.R203W	CCCACCGTAATGC	.	117.0	9.0	119.0	0.0	G|0.983;A|0.017	68
WNT1	7471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49374980	49374980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	WNT1	NM_005430	exon4	c.T670C	p.S224P	GGGATGTCCGGCT	.	242.0	28.0	189.0	0.0	.	1083
YLPM1	56252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75245225	75245225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	YLPM1	NM_019589	exon2	c.A949G	p.K317E	GGACACAAAAAGG	.	235.0	43.0	242.0	0.0	.	71
ZBTB18	10472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244217640	244217640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_205768	exon2	c.G564T	p.E188D	GGCCGAGCCTGGG	.	224.0	42.0	182.0	0.0	.	.
ZNF445	353274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44492403	44492403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF445	NM_181489	exon5	c.G650A	p.G217E	TGGTCTCCCGGGC	.	125.0	9.0	110.0	0.0	.	91
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31040266	31040266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF536	NM_014717	exon4	c.G3740T	p.G1247V	TGGCGGGCCTGCC	.	85.0	17.0	81.0	0.0	.	144
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40520371	40520371	+	Silent	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF546	NM_178544	exon7	c.A1194T	p.S398S	TGGCTCATACCTT	.	80.0	13.0	101.0	0.0	.	155
ZNF592	9640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85327447	85327447	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF592	NM_014630	exon4	c.G1541C	p.S514T	CCCACAGTGTTGC	.	196.0	33.0	154.0	0.0	.	96
ZNF790	388536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37310227	37310227	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF790	NM_206894	exon5	c.G1019C	p.C340S	TCCTTACATTCAT	.	77.0	14.0	79.0	0.0	.	92
VEPH1	79674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	157188168	157188169	+	Missense_Mutation	DNP	AG	AG	TT	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	.	.	.	p.F97I	TCCCAAAGGGTCT	.	151.0	24.0	141.0	0.0	.	.