Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABAT	18	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	8866725	8866725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ABAT	NM_001127448	exon12	c.A905G	p.N302S	GAGACAACCACGC	.	96.0	21.0	94.0	0.0	.	91
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48467381	48467381	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ABCA13	NM_152701	exon42	c.C12478G	p.Q4160E	CTTTTGCAAGATT	.	67.0	24.0	64.0	0.0	.	521
AFF1	4299	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	88048838	88048838	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	AFF1	NM_001166693	exon16	c.C2947T	p.Q983X	ATGAAGCAGAAAG	.	102.0	42.0	126.0	1.0	.	289
ANKLE2	23141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133319812	133319812	+	Silent	SNP	T	T	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ANKLE2	NM_015114	exon6	c.A1281C	p.V427V	GTTGACTACATCT	.	84.0	18.0	89.0	0.0	.	68
ANTXR1	84168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69379340	69379340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ANTXR1	NM_032208	exon13	c.T991C	p.F331L	ATCCTGTTCCTGC	.	71.0	14.0	70.0	0.0	.	94
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21232581	21232585	+	Frame_Shift_Del	DEL	TTATC	TTATC	-	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	TTATC	TTATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	APOB	NM_000384	exon26	c.7155_7159del	p.2385_2387del	AATCTTTTATCTT	.	222.0	67.0	172.0	0.0	.	175
ATCAY	85300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3908298	3908298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ATCAY	NM_033064	exon6	c.G577A	p.V193I	ATCATCGTCTTCG	.	201.0	59.0	209.0	0.0	.	67
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	116932324	116932324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ATP1A1	NM_001160233	exon8	c.G1018A	p.V340I	GCCACTGTCACGG	.	95.0	34.0	62.0	0.0	.	91
BNC1	646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83932609	83932609	+	Missense_Mutation	SNP	C	C	G	rs144958076	alternate_allele	TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	BNC1	NM_001717	exon4	c.G1394C	p.G465A	GGTTGGCCTTTGG	.	142.0	43.0	151.0	0.0	C|1.000;A|0.000	93
BTC	685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	75675929	75675929	+	Silent	SNP	G	G	T	rs146656652	alternate_allele	TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	BTC	NM_001729	exon4	c.C282A	p.V94V	ATCACAGCTATAA	.	410.0	107.0	381.0	0.0	G|1.000;C|0.000	523
C14orf183	196913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50550627	50550627	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	C14orf183	NM_001014830	exon5	c.A717G	p.T239T	CCCACCTGTGGGG	.	160.0	45.0	133.0	0.0	.	90
C14orf28	122525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45373642	45373642	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	C14orf28	NM_001017923	exon4	c.G659C	p.G220A	GCCATGGGGCACC	.	93.0	28.0	104.0	0.0	.	91
C1R	715	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7244239	7244239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	.	.	.	.	.	CTGCCCTGCAGAA	.	95.0	35.0	75.0	0.0	.	.
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112358134	112358134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CCDC80	NM_199511	exon2	c.G619A	p.G207S	TCTGGCCCTCGCT	.	93.0	27.0	98.0	0.0	.	92
CCDC8	83987	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	46915578	46915578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CCDC8	NM_032040	exon1	c.C490T	p.P164S	CGCTGGGCTGCTT	.	31.0	8.0	24.0	0.0	.	93
CES2	8824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	66976600	66976600	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CES2	NM_003869	exon10	c.G1524A	p.W508X	CAGCTGGCTCAAG	.	87.0	21.0	90.0	0.0	.	90
CFH	3075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196684870	196684870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CFH	NM_000186	exon11	c.A1667T	p.N556I	GTTACAATGGTTG	.	176.0	83.0	149.0	0.0	.	566
CLCN3	1182	hgsc.bcm.edu;broad.mit.edu	37	4	170618416	170618417	+	In_Frame_Ins	INS	-	-	CAT	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CLCN3	NM_173872	exon9	c.1094_1095insCAT	p.S365delinsSI	TGAGGTCCATCAA	.	218.0	55.0	183.0	0.0	.	136
CLCN3	1182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	170618424	170618424	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CLCN3	NM_001829	exon9	c.1102delC	p.P368fs	ATCAATCCATTTG	.	226.0	62.0	183.0	0.0	.	136
CMPK2	129607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	7003632	7003632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CMPK2	NM_001256478	exon2	c.G753T	p.K251N	CTGGAACTTTCCT	.	138.0	40.0	103.0	0.0	.	68
CNGA4	1262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6265537	6265537	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CNGA4	NM_001037329	exon6	c.C1626T	p.P542P	AATGCCCGAGGAC	.	57.0	20.0	64.0	0.0	.	91
CNOT10	25904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32774933	32774933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CNOT10	NM_001256742	exon11	c.A1414G	p.K472E	GAAACTAAAGGCC	.	272.0	80.0	275.0	0.0	.	91
CSHL1	1444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61987600	61987600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CSHL1	NM_022579	exon4	c.C393A	p.N131K	CACCAGGTTGTTG	.	141.0	19.0	137.0	0.0	.	90
CTDSPL	10217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38017293	38017293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	CTDSPL	NM_001008392	exon7	c.G613T	p.V205L	AACTACGTGAAGG	.	63.0	25.0	71.0	0.0	.	90
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266112	41266112	+	Missense_Mutation	SNP	T	T	G	rs121913228	bycluster	TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T109G	p.S37A	ATCCATTCTGGTG	.	162.0	25.0	163.0	0.0	.	24361
CTPS1	1503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	41457492	41457492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	.	NM_001905	exon7	c.T695C	p.M232T	TATCAATGTTCTG	.	158.0	51.0	137.0	0.0	.	.
DEPDC1B	55789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	59940645	59940645	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	DEPDC1B	NM_001145208	exon5	c.C636A	p.V212V	CGAATTGACAAGT	.	158.0	53.0	137.0	0.0	.	91
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225446907	225446907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	DNAH14	NM_001373	exon46	c.G7091T	p.G2364V	AACATGGTTCAAT	.	636.0	126.0	414.0	0.0	.	23
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7636408	7636408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	DNAH2	NM_020877	exon4	c.C403A	p.Q135K	CAGACCCAGAACC	.	67.0	26.0	71.0	0.0	.	102
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169186741	169186741	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	DOCK2	NM_004946	exon24	c.G2409T	p.L803L	TGTCCTGCATGAT	.	81.0	23.0	83.0	0.0	.	97
ENDOD1	23052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	94823277	94823277	+	Silent	SNP	T	T	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ENDOD1	NM_015036	exon1	c.T186G	p.A62A	GGGTGCTGAGCGC	.	100.0	29.0	76.0	0.0	.	68
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66467891	66467891	+	Silent	SNP	G	G	T	rs55882537		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	EPHA5	NM_004439	exon3	c.C378A	p.I126I	TATGAAGATTCTG	.	55.0	17.0	56.0	0.0	.	1430
EPHX2	2053	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	27382882	27382882	+	Silent	SNP	G	G	T	rs200523278	alternate_allele	TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	EPHX2	NM_001979	exon12	c.G1062T	p.A354A	TAGGGCGGTGGCC	.	141.0	46.0	159.0	1.0	G|0.999;A|0.001	91
ERCC2	2068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45856053	45856053	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	ERCC2,NS,carcinoma,-1	ERCC2	NM_000400	exon20	c.T1853G	p.V618G	ATGATGACGGCCC	.	67.0	18.0	80.0	0.0	.	848
EVC	2121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5798959	5798959	+	Silent	SNP	G	G	T	rs201083145	alternate_allele	TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	EVC	NM_153717	exon14	c.G2097T	p.L699L	GGCCCTGGTAAGA	.	109.0	38.0	109.0	0.0	G|0.999;A|0.000	92
FOCAD	54914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	20926369	20926369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	.	NM_017794	exon28	c.G3031T	p.D1011Y	ATTGTGGATAGCC	.	106.0	27.0	105.0	0.0	.	.
FRMD1	79981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	168464373	168464373	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	FRMD1	NM_024919	exon6	c.C712T	p.Q238X	GGCCCTGGCGCTC	.	109.0	21.0	120.0	0.0	.	91
FRRS1	391059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	100214255	100214256	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	FRRS1	NM_001013660	exon3	c.70_71insT	p.P24fs	CATTGGGATAATT	.	265.0	72.0	215.0	0.0	.	91
FUT8	2530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	66082780	66082780	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	FUT8	NM_178155	exon4	c.G288A	p.Q96Q	AGAACAGATTGAA	.	139.0	43.0	141.0	0.0	.	91
GON4L	54856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155736387	155736387	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	GON4L	NM_001037533	exon21	c.C2877T	p.D959D	CAAATTGTCTTTT	.	186.0	39.0	117.0	0.0	.	93
GPR132	29933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105518034	105518034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	GPR132	NM_013345	exon4	c.C440T	p.A147V	TCCAGCGCGTACA	.	123.0	33.0	108.0	0.0	.	92
GTPBP10	85865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89982211	89982211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	GTPBP10	NM_001042717	exon2	c.G115A	p.G39S	GGAGAAGGTGGAA	.	164.0	48.0	144.0	0.0	.	68
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65116628	65116628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	HELZ	NM_014877	exon27	c.G3731T	p.G1244V	CCTCGTCCATGTG	.	197.0	45.0	147.0	0.0	.	92
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	185985310	185985310	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	HMCN1	NM_031935	exon32	c.C5130A	p.Y1710X	ACAGTACATATGC	.	205.0	111.0	138.0	0.0	.	113
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70902688	70902688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	HYDIN	NM_001270974	exon66	c.G11095T	p.G3699C	GGTGGCCCATCTA	.	40.0	14.0	47.0	0.0	.	92
IBSP	3381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	88732574	88732609	+	In_Frame_Del	DEL	GAAGAGGAAGGAAATGAAAACGAAGAAAGCGAAGCA	GAAGAGGAAGGAAATGAAAACGAAGAAAGCGAAGCA	-	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	GAAGAGGAAGGAAATGAAAACGAAGAAAGCGAAGCA	GAAGAGGAAGGAAATGAAAACGAAGAAAGCGAAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	IBSP	NM_004967	exon7	c.466_501del	p.156_167del	GAGGAGGAAGAGG	.	108.0	18.0	134.0	0.0	.	90
KIAA0355	9710	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34791601	34791601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	KIAA0355	NM_014686	exon2	c.G223T	p.D75Y	ATCGCCGACATCC	.	68.0	19.0	70.0	1.0	.	91
KRT7	3855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52635403	52635403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	KRT7	NM_005556	exon5	c.G841A	p.A281T	GCTGAAGCCTGGT	.	57.0	12.0	61.0	0.0	.	90
LAT2	7462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73631176	73631176	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	LAT2	NM_032464	exon4	c.T116G	p.I39S	AGAAAATCTACCA	.	98.0	27.0	86.0	0.0	.	90
LBH	81606	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	30480370	30480370	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	LBH	NM_030915	exon3	c.A201G	p.E67E	GGTGGAACCCACA	.	87.0	27.0	93.0	1.0	.	90
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14271099	14271099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	LPHN1	NM_001008701	exon9	c.G1640A	p.G547E	TTCTCCCCACTCT	.	64.0	22.0	80.0	0.0	.	523
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	40360309	40360309	+	Silent	SNP	G	G	A	rs147506870	byfrequency	TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	LRFN2	NM_020737	exon3	c.C1743T	p.G581G	CTGGGCGCCGTTG	.	26.0	9.0	26.0	0.0	G|1.000;A|0.000	93
LRFN3	79414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36431219	36431219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	LRFN3	NM_024509	exon2	c.G892A	p.V298M	CCCGTGGTGACTC	.	25.0	7.0	28.0	0.0	.	90
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40136207	40136207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	LRRC4C	NM_001258419	exon7	c.A1636G	p.I546V	AGAAAATGACCAG	.	93.0	24.0	99.0	0.0	.	521
MANSC1	54682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	12483617	12483617	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	MANSC1	NM_018050	exon4	c.G640T	p.E214X	CTATTTCTTGATC	.	94.0	32.0	90.0	0.0	.	90
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210594614	210594614	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	MAP2	NM_002374	exon14	c.C5196T	p.F1732F	AGATTTCAAAGAA	.	133.0	25.0	123.0	0.0	.	591
MTMR6	9107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25842077	25842077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	MTMR6	NM_004685	exon3	c.A144G	p.I48M	GTGTAATATCTAC	.	86.0	18.0	63.0	0.0	.	94
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9074794	9074794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	MUC16	NM_024690	exon3	c.C12652T	p.P4218S	TGGGAGGTAAACT	.	128.0	31.0	141.0	0.0	.	566
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3067314	3067314	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	MYOM1	NM_003803	exon38	c.G5004A	p.E1668E	CGCCTCCTCCTCT	.	110.0	25.0	106.0	0.0	.	94
NAA25	80018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112481516	112481516	+	Silent	SNP	G	G	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	NAA25	NM_024953	exon18	c.C2163G	p.S721S	CCGGGAGGATACC	.	72.0	26.0	91.0	0.0	.	155
NWD1	284434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16918475	16918475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	NWD1	NM_001007525	exon18	c.C3815T	p.T1272M	TATTTACGGGCCT	.	142.0	34.0	100.0	0.0	.	7
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228560355	228560355	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	OBSCN	NM_001271223	exon105	c.C24747T	p.A8249A	GGCGGCCGACACA	.	382.0	176.0	296.0	0.0	.	403
OR51E2	81285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4703454	4703454	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	OR51E2	NM_030774	exon2	c.A488C	p.K163T	AGCCGCTTGATCA	.	97.0	24.0	70.0	0.0	.	502
PAX1	5075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	21687274	21687274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PAX1	NM_006192	exon2	c.C485T	p.P162L	TTCTGCCCGGGGC	.	52.0	20.0	42.0	0.0	.	227
PBX2	5089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32156140	32156140	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PBX2	NM_002586	exon3	c.C437G	p.S146C	CCACCAGAGGCTG	.	57.0	16.0	59.0	0.0	.	91
PDHA2	5161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96761797	96761797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PDHA2	NM_005390	exon1	c.G496A	p.G166S	ATCGTCGGTGCAC	.	75.0	22.0	71.0	0.0	.	90
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	32089543	32089543	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PDZD2	NM_178140	exon19	c.A5989T	p.M1997L	CAAGGCATGTGGA	.	48.0	13.0	43.0	0.0	.	563
PHF17	79960	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	129792900	129792900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PHF17	NM_199320	exon11	c.G2012C	p.G671A	TTAAAGGAGACTT	.	186.0	65.0	171.0	1.0	.	90
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51523772	51523772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PKHD1	NM_138694	exon61	c.T11152C	p.S3718P	CCTTTGACTGAGT	.	74.0	13.0	81.0	0.0	.	603
PLEKHA5	54477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	19285332	19285332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PLEKHA5	NM_001143821	exon3	c.C175T	p.P59S	GATTTGCCTACTG	.	99.0	24.0	98.0	0.0	.	227
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	50728375	50728379	+	Frame_Shift_Del	DEL	GGTGG	GGTGG	-	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	GGTGG	GGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PLXNB2	NM_012401	exon3	c.635_639del	p.212_213del	TGTGTTGGTGGAC	.	71.0	16.0	106.0	0.0	.	211
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	50728381	50728387	+	Frame_Shift_Del	DEL	CAGGTAG	CAGGTAG	-	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	CAGGTAG	CAGGTAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PLXNB2	NM_012401	exon3	c.627_633del	p.209_211del	GGTGGACAGGTAG	.	66.0	15.0	109.0	0.0	.	211
POU3F2	5454	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	99283906	99283906	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	POU3F2	NM_005604	exon1	c.1157delC	p.S386fs	TCACCTCCCTCGC	.	110.0	29.0	81.0	0.0	.	90
PPP2R1B	5519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111636082	111636082	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PPP2R1B	NM_001177562	exon2	c.A141G	p.L47L	TGTTGATAACTTC	.	101.0	17.0	111.0	0.0	.	658
PPT1	5538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40539787	40539787	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PPT1	NM_000310	exon9	c.T867C	p.H289H	CTGAAGATGGTCC	.	78.0	16.0	83.0	0.0	.	91
PRELID1	27166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176732936	176732936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PRELID1	NM_013237	exon3	c.G383A	p.R128Q	TCCGCCGGGAAGC	.	53.0	12.0	70.0	0.0	.	90
PRKAA1	5562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	40762932	40762932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PRKAA1	NM_206907	exon10	c.C1673A	p.T558K	TCTATTGTGTGAC	.	116.0	25.0	153.0	0.0	.	792
PRPF4B	8899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4032471	4032471	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PRPF4B	NM_003913	exon2	c.A720G	p.K240K	ATCAAAATCCCCT	.	178.0	47.0	152.0	0.0	.	1308
PSD	5662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104173644	104173644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PSD	NM_001270965	exon6	c.A1435G	p.T479A	TCTGTGTCCAAGG	.	160.0	19.0	172.0	0.0	.	272
PXK	54899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	58383369	58383369	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	PXK	NM_017771	exon11	c.T1022G	p.L341X	GCCACTTACTGTA	.	98.0	28.0	124.0	0.0	.	334
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36597509	36597509	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	RAG1	NM_000448	exon2	c.G2655A	p.L885L	GGAGCTGATGGAT	.	74.0	29.0	60.0	0.0	.	230
RIMBP2	23504	broad.mit.edu;bcgsc.ca	37	12	130935855	130935855	+	Missense_Mutation	SNP	G	G	A	rs113895223	byfrequency	TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	RIMBP2	NM_015347	exon5	c.C338T	p.A113V	CCGATCGCAGAGC	.	77.0	25.0	100.0	1.0	G|0.500;A|0.500	142
RUSC1	23623	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	155292686	155292686	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	RUSC1	NM_001105203	exon2	c.C1122A	p.L374L	GGAACTCCGGTCC	.	131.0	38.0	99.0	0.0	.	92
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167298065	167298065	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	SCN7A	NM_002976	exon14	c.C1998A	p.L666L	GCGTGGGAGTTGA	.	247.0	82.0	204.0	0.0	.	67
SPNS1	83985	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	28995279	28995279	+	Splice_Site	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	SPNS1	NM_032038	exon11	c.1492+1G>A	.	TGCAGGGTCAGTT	.	18.0	6.0	11.0	0.0	.	90
ST6GALNAC1	55808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74625607	74625607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ST6GALNAC1	NM_018414	exon2	c.G318T	p.Q106H	CGGTGCCTGGTTG	.	170.0	47.0	167.0	0.0	.	90
ST8SIA4	7903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	100147642	100147642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ST8SIA4	NM_005668	exon5	c.C989A	p.P330H	CTGTGAGGGCTTG	.	88.0	21.0	108.0	0.0	.	153
STK32A	202374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	146752851	146752851	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	STK32A	NM_001112724	exon10	c.T897C	p.I299I	TTTCATTCCTAAT	.	95.0	38.0	72.0	0.0	.	521
SYT7	9066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61323666	61323666	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	SYT7	NM_001252065	exon2	c.C45T	p.R15R	GACGTCGCGCGAG	.	85.0	20.0	78.0	0.0	.	94
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	30694575	30694575	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TEX15	NM_031271	exon3	c.G8076T	p.G2692G	CAACAGCCCAGAA	.	121.0	40.0	109.0	0.0	.	97
TGS1	96764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	56698309	56698309	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TGS1	NM_024831	exon3	c.T198C	p.G66G	AGGTGGTTATTCC	.	209.0	57.0	161.0	0.0	.	227
TLK1	9874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171853223	171853223	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TLK1	NM_012290	exon20	c.A2064G	p.T688T	TAATATTGTATTT	.	65.0	12.0	59.0	0.0	.	439
TLK2	11011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	60637386	60637386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TLK2	NM_006852	exon10	c.G730A	p.D244N	AACTGTGATTTGA	.	450.0	116.0	442.0	0.0	.	464
TMEM192	201931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166000907	166000907	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TMEM192	NM_001100389	exon6	c.A719T	p.D240V	ATGGTGTCTCCTT	.	97.0	37.0	73.0	0.0	.	69
TMPRSS11D	9407	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68693206	68693206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TMPRSS11D	NM_004262	exon8	c.C725A	p.S242Y	ATACCAGACGTGG	.	131.0	44.0	107.0	1.0	.	91
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141370238	141370238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TRAPPC9	NM_031466	exon9	c.A1700G	p.Y567C	GAGGCGTAGACCA	.	116.0	13.0	92.0	0.0	.	228
TSPAN8	7103	broad.mit.edu;ucsc.edu	37	12	71537963	71537963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TSPAN8	NM_004616	exon3	c.A91G	p.I31V	CCCATATTGCTAA	.	33.0	4.0	39.0	0.0	.	93
TTC16	158248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130489325	130489325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TTC16	NM_144965	exon11	c.C1502T	p.A501V	ACCTGGCCAGGCT	.	49.0	18.0	43.0	0.0	.	90
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179438088	179438088	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TTN	NM_001267550	exon326	c.T72771C	p.Y24257Y	CACAATATAATTG	.	63.0	17.0	65.0	0.0	.	636
TULP1	7287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35471363	35471363	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	TULP1	NM_003322	exon13	c.C1296T	p.N432N	CCTCTCGTTCTCC	.	73.0	10.0	81.0	0.0	.	92
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215932021	215932021	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	USH2A	NM_206933	exon58	c.A11305T	p.M3769L	TTGACATAGGTGT	.	125.0	18.0	81.0	0.0	.	115
USP20	10868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	132632793	132632793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	USP20	NM_001008563	exon15	c.C1627T	p.L543F	GACTGCCTTGCTG	.	90.0	21.0	88.0	0.0	.	658
VARS2	57176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30893707	30893707	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	VARS2	NM_001167734	exon29	c.C3102T	p.Y1034Y	AAGGTACAAGTTG	.	147.0	59.0	151.0	0.0	.	26
WFDC1	58189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84358060	84358060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	WFDC1	NM_021197	exon5	c.T598C	p.Y200H	AAAGAATATCCAG	.	79.0	23.0	83.0	0.0	.	153
XPNPEP3	63929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41320402	41320416	+	In_Frame_Del	DEL	TACCTCGGGATGGAT	TACCTCGGGATGGAT	-	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	TACCTCGGGATGGAT	TACCTCGGGATGGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	XPNPEP3	NM_022098	exon9	c.1273_1287del	p.425_429del	GGCCACTACCTCG	.	102.0	20.0	131.0	0.0	.	68
ZFR	51663	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	32404160	32404160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ZFR	NM_016107	exon7	c.G1075A	p.E359K	CAGCTTCTTTTTT	.	88.0	13.0	100.0	2.0	.	90
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	88495698	88495698	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	.	NM_001127464	exon1	c.C1820G	p.S607C	GCTCTTCCCTGTC	.	84.0	28.0	90.0	0.0	.	.
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88965181	88965181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ZNF804B	NM_181646	exon4	c.C2885T	p.P962L	AAGTCCCATGCAC	.	299.0	100.0	283.0	0.0	.	101
ZSCAN5A	79149	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56735000	56735000	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	ZSCAN5A	NM_024303	exon3	c.G588C	p.Q196H	ACTCACCTGCCTC	.	48.0	8.0	48.0	0.0	.	155
PIEZO1	9780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	88802619	88802620	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	.	.	.	.	p.P498Q	GCTGACGGGGCCC	.	79.0	19.0	82.0	0.0	.	.
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74227627	74227628	+	Missense_Mutation	DNP	GT	GT	AA	novel		TCGA-KR-A7K0-01A-12D-A33Q-10	TCGA-KR-A7K0-10A-01D-A33Q-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	683468d5-b681-43be-9025-724ad958d4f7	7266f903-8881-4952-9391-525e33241f67	.	.	.	.	.	p.T432L	GCAACTGTCTGTC	.	358.0	115.0	380.0	0.0	.	.