Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABRA	137735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	107782252	107782252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ABRA	NM_139166	exon1	c.C167A	p.T56N	TCCTGGGTCCCTC	.	124.0	102.0	202.0	2.0	.	92
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43828114	43828114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ADAMTS20	NM_025003	exon19	c.A2654C	p.K885T	CATTCTTTATCAG	.	147.0	71.0	147.0	0.0	.	795
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43828156	43828156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ADAMTS20	NM_025003	exon19	c.T2612C	p.I871T	CAAGTTATGTTTC	.	120.0	53.0	121.0	0.0	.	795
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100350158	100350158	+	Silent	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	AGL	NM_000644	exon20	c.T2580C	p.V860V	CGCTGTTGGAATT	.	188.0	69.0	173.0	0.0	.	92
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247031037	247031037	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	AHCTF1	NM_015446	exon25	c.C3192A	p.I1064I	ATTGTTGATGAAA	.	381.0	213.0	242.0	1.0	.	97
AICDA	57379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8759531	8759531	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	AICDA	NM_020661	exon2	c.T86G	p.L29R	TAGCACAGGTAGG	.	77.0	29.0	47.0	0.0	.	229
AIM1L	55057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26655355	26655355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	AIM1L	NM_001039775	exon16	c.G4324A	p.E1442K	AAGGCTCTGAAAA	.	59.0	28.0	57.0	0.0	.	91
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193175188	193175188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ATP13A4	NM_032279	exon15	c.C1741T	p.P581S	TGCAGGGCTTAAC	.	197.0	81.0	169.0	0.0	.	92
BTAF1	9044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93742473	93742473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	BTAF1	NM_003972	exon18	c.G2178T	p.R726S	ACAGAGGATTAGT	.	67.0	48.0	85.0	0.0	.	92
C1RL	51279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7249108	7249108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	C1RL	NM_016546	exon6	c.A1343G	p.H448R	CAGTGATGGGCAT	.	91.0	31.0	85.0	0.0	.	91
C3	718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6714044	6714046	+	In_Frame_Del	DEL	GTA	GTA	-	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	GTA	GTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	C3	NM_000064	exon7	c.730_732del	p.244_244del	ATAGATGTAGTAG	.	42.0	16.0	33.0	0.0	.	95
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140865851	140865851	+	Silent	SNP	C	C	T	rs201843778		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CACNA1B	NM_001243812	exon11	c.C1350T	p.R450R	CGCCCGCGCCAGC	.	87.0	37.0	66.0	0.0	.	138
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1902886	1902886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CACNA2D4	NM_172364	exon38	c.G3349C	p.A1117P	GCGAGGCTGAGGT	.	138.0	55.0	104.0	0.0	.	23
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	85935378	85935378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CADM2	NM_001167675	exon5	c.C430A	p.P144T	TCATCACCAGTTA	.	249.0	88.0	244.0	0.0	.	228
CAPN13	92291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31010123	31010123	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CAPN13	NM_144575	exon2	c.C69A	p.T23T	CCGCAAGGTGGTA	.	154.0	63.0	137.0	0.0	.	136
CCDC130	81576	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	13873870	13873870	+	Silent	SNP	G	G	A	rs35254119	byfrequency	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CCDC130	NM_030818	exon10	c.G1179A	p.S393S	CGACTCGGAGAGT	.	24.0	10.0	18.0	0.0	G|0.983;A|0.017	90
CCDC136	64753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128449530	128449530	+	Silent	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CCDC136	NM_022742	exon11	c.A1632G	p.T544T	ACTGACAGAATTG	.	120.0	99.0	158.0	1.0	.	24
CCDC63	160762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111336787	111336787	+	Silent	SNP	C	C	T	rs141258896		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CCDC63	NM_152591	exon10	c.C1200T	p.Y400Y	CAAGTACGGGGAG	.	76.0	39.0	65.0	0.0	C|1.000;T|0.000	134
CHGA	1113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93397788	93397788	+	Silent	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CHGA	NM_001275	exon6	c.C549G	p.T183T	CAACACCCACCCT	.	14.0	12.0	34.0	0.0	.	516
CHIC2	26511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54915246	54915246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CHIC2	NM_012110	exon3	c.A206G	p.N69S	ACTCTGTTGATGC	.	208.0	90.0	183.0	0.0	.	1082
CLCF1	23529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67135026	67135026	+	Missense_Mutation	SNP	G	G	T	rs76168219	byfrequency;alternate_allele	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CLCF1	NM_013246	exon2	c.C88A	p.R30S	CTGTGCGATTGAG	.	78.0	30.0	79.0	0.0	G|0.997;A|0.003	90
CNR1	1268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88854612	88854612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CNR1	NM_001160258	exon4	c.A382T	p.T128S	TGAAGGTGCCCAG	.	70.0	26.0	56.0	0.0	.	92
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137715262	137715262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	COL5A1	NM_000093	exon61	c.G4645A	p.G1549S	CCCCAGGGTCCAA	.	140.0	50.0	114.0	0.0	.	524
CSMD3	114788	hgsc.bcm.edu;bcgsc.ca	37	8	113569137	113569137	+	Silent	SNP	T	T	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CSMD3	NM_198123	exon25	c.A4089C	p.G1363G	CTTGTATCCAAAT	.	20.0	10.0	66.0	0.0	.	1132
CSMD3	114788	hgsc.bcm.edu;bcgsc.ca	37	8	113569140	113569140	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CSMD3	NM_198123	exon25	c.4086delT	p.F1362fs	GTATCCAAATTGT	.	20.0	11.0	65.0	0.0	.	1132
CTNND2	1501	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11159716	11159716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CTNND2	NM_001332	exon12	c.G2131A	p.V711M	GCAGCACCTGTGA	.	113.0	45.0	96.0	1.0	.	293
CUL2	8453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	35333758	35333758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CUL2	NM_001198778	exon7	c.A602G	p.H201R	ACCCCATGGATTA	.	199.0	134.0	109.0	0.0	.	229
DCAF5	8816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69520835	69520835	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DCAF5	NM_003861	exon9	c.G2568A	p.V856V	GGCCACCACCTCC	.	93.0	28.0	73.0	0.0	.	91
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196620969	196620969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DNAH7	NM_018897	exon62	c.G11474A	p.S3825N	ATGCTGCTAACCA	.	327.0	130.0	273.0	0.0	.	102
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	6565467	6565467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DNHD1	NM_144666	exon19	c.C3745A	p.H1249N	ATCATGCATGGCC	.	62.0	23.0	64.0	0.0	.	24
DPP9	91039	hgsc.bcm.edu;bcgsc.ca	37	19	4695540	4695540	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DPP9	NM_139159	exon12	c.C1203A	p.P401P	CTGCTGGGGCCGG	.	76.0	5.0	42.0	0.0	.	91
DZIP3	9666	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108407750	108407750	+	Silent	SNP	C	C	T	rs200425501		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DZIP3	NM_014648	exon31	c.C3495T	p.C1165C	GCCTTGCGCTCAC	.	253.0	94.0	261.0	1.0	C|0.999;T|0.001	91
EFCAB7	84455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63998376	63998376	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	EFCAB7	NM_032437	exon4	c.C435T	p.A145A	AAATGCCATAATA	.	316.0	123.0	274.0	1.0	.	68
EI24	9538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125451109	125451109	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	EI24	.	.	.	.	TTAGGAATTGAAA	.	106.0	51.0	96.0	0.0	.	91
EPHA3	2042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	89391190	89391190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	EPHA3	NM_005233	exon5	c.G1256T	p.S419I	AGCTGAGCTCCCC	.	81.0	39.0	62.0	0.0	.	1500
ERCC6L	54821	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71426314	71426314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ERCC6L	NM_017669	exon2	c.T2303C	p.I768T	GAACTGATATCTT	.	109.0	95.0	94.0	1.0	.	93
ESYT2	57488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	158540904	158540904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ESYT2	NM_020728	exon15	c.G1706A	p.R569H	TCCTGGCGCTTGG	.	62.0	50.0	103.0	0.0	.	92
EVA1C	59271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33887198	33887198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	NM_058187	exon8	c.G1024T	p.V342F	GCCCTGGTCATCA	.	54.0	33.0	44.0	0.0	.	.
FCGBP	8857	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40396028	40396028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	FCGBP	NM_003890	exon15	c.G7369A	p.G2457R	GATCTCCCGACGC	.	194.0	24.0	156.0	0.0	.	98
FLG	2312	ucsc.edu;bcgsc.ca	37	1	152280081	152280081	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	FLG	NM_002016	exon3	c.C7281A	p.A2427A	TCCATGGGCGGAC	.	236.0	80.0	136.0	2.0	.	106
GALNT5	11227	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158115721	158115721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GALNT5	NM_014568	exon1	c.T1127C	p.V376A	ATAGAGTGCCACT	.	126.0	52.0	114.0	1.0	.	290
GPR152	390212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67219232	67219232	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GPR152	NM_206997	exon1	c.C964G	p.P322A	TGCCCGGCCGCTC	.	61.0	25.0	55.0	0.0	.	90
GPR35	2859	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241569984	241569984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GPR35	NM_001195382	exon6	c.C708A	p.D236E	CACCGACGTGGGG	.	71.0	25.0	68.0	1.0	.	93
GRIA3	2892	broad.mit.edu;ucsc.edu	37	X	122538601	122538601	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GRIA3	NM_000828	exon10	c.G1336T	p.E446X	CAACTGGAAGGAA	.	118.0	98.0	113.0	1.0	.	134
GRIA3	2892	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	122538600	122538600	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GRIA3	NM_000828	exon10	c.G1335T	p.L445L	GCAACTGGAAGGA	.	117.0	96.0	115.0	1.0	.	134
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	66838427	66838427	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GRIP1	NM_001178074	exon12	c.C1468T	p.Q490X	GGAGCTGACTGGC	.	171.0	58.0	187.0	0.0	.	494
GRM1	2911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146708066	146708066	+	Missense_Mutation	SNP	C	C	A	rs201399008	alternate_allele	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GRM1	NM_000838	exon7	c.C1643A	p.T548K	TTTGCACGGCCTG	.	120.0	49.0	84.0	0.0	.	1080
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236720605	236720605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HEATR1	NM_018072	exon37	c.G5245A	p.E1749K	CCAGCTCGCTGGT	.	203.0	64.0	129.0	0.0	.	93
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63978599	63978599	+	Silent	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HERC1	NM_003922	exon34	c.T6184C	p.L2062L	ATGCCAATCCATA	.	124.0	67.0	137.0	0.0	.	666
HIST1H3B	8358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26032226	26032226	+	Silent	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HIST1H3B	NM_003537	exon1	c.G63T	p.L21L	GGTAGCCAGCTGC	.	52.0	19.0	35.0	0.0	.	92
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186017888	186017888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HMCN1	NM_031935	exon42	c.A6494G	p.Q2165R	ATGCTCAGGTTCA	.	129.0	27.0	86.0	0.0	.	113
HR	55806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21986325	21986325	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HR	NM_018411	exon2	c.G359C	p.G120A	AGGGGGCCACAGC	.	52.0	41.0	60.0	0.0	.	154
HRNR	388697	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152187996	152187996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HRNR	NM_001009931	exon3	c.G6109A	p.G2037S	ACTGACCTGAGCT	.	407.0	73.0	231.0	0.0	.	93
IGHMBP2	3508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68701272	68701272	+	Silent	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	IGHMBP2	NM_002180	exon10	c.A1428T	p.P476P	CCTCCCAGGTGTG	.	63.0	36.0	72.0	0.0	.	90
INTS5	80789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62415200	62415200	+	Silent	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	INTS5	NM_030628	exon2	c.T2352A	p.V784V	GCAGTGAACCAGG	.	135.0	59.0	91.0	0.0	.	92
IPO9	55705	broad.mit.edu;bcgsc.ca	37	1	201837827	201837827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	IPO9	NM_018085	exon16	c.T1907C	p.I636T	CCCAGATTGAAGC	.	112.0	62.0	47.0	2.0	.	228
IQCE	23288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2649728	2649728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	IQCE	NM_152558	exon22	c.G2020A	p.V674I	GATGACGTCAACT	.	94.0	37.0	65.0	0.0	.	226
ITFG3	83986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	312457	312457	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ITFG3	NM_032039	exon8	c.C876T	p.L292L	GGGTCTCTACGAG	.	72.0	24.0	34.0	0.0	.	90
KCNG2	26251	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	18	77623988	77623988	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KCNG2	NM_012283	exon1	c.C321A	p.Y107X	GGCCTACTGGGGC	.	16.0	14.0	13.0	0.0	.	90
KCNQ5	56479	broad.mit.edu;mdanderson.org	37	6	73331992	73331992	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KCNQ5	NM_001160132	exon1	c.G75T	p.A25A	GGCGGCGGCGGCG	.	14.0	6.0	12.0	0.0	.	158
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34839933	34839933	+	Silent	SNP	C	C	T	rs150651317		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KIAA0355	NM_014686	exon12	c.C2700T	p.H900H	CCTGCACGGTGGC	.	75.0	35.0	61.0	0.0	C|1.000;T|0.000	91
KIF4B	285643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154394947	154394947	+	Missense_Mutation	SNP	G	G	A	rs199913629	alternate_allele	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KIF4B	NM_001099293	exon1	c.G1528A	p.A510T	TCTGACGCTTTTA	.	88.0	45.0	61.0	2.0	G|0.999;T|0.001	1
KLHL14	57565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	30257147	30257147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KLHL14	NM_020805	exon8	c.A1735G	p.S579G	TCCAGCTGTAGCC	.	142.0	61.0	103.0	0.0	.	91
KRTAP16-1	100505753	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39464645	39464645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	NM_001146182	exon1	c.C861A	p.S287R	GCACGAGCTCTGA	.	45.0	20.0	37.0	0.0	.	.
LCT	3938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136567036	136567036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	LCT	NM_002299	exon8	c.G2881A	p.A961T	GATCGGCATCCAG	.	84.0	30.0	57.0	0.0	.	101
LOX	4015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121411127	121411127	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	LOX	NM_002317	exon3	c.T850A	p.Y284N	AGGAATATCTTGG	.	220.0	90.0	202.0	0.0	.	650
LRP3	4037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	33696163	33696163	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	LRP3	NM_002333	exon5	c.C487T	p.Q163X	CTGGGCCAGGCAT	.	38.0	20.0	27.0	0.0	.	92
LRRC4B	94030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51021678	51021678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	LRRC4B	NM_001080457	exon3	c.C1292T	p.T431M	TGGCCCGTGTCCT	.	49.0	20.0	47.0	0.0	.	205
MAN1A2	10905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118065534	118065534	+	Silent	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MAN1A2	NM_006699	exon13	c.A1881G	p.L627L	TGTGTTACATTTA	.	78.0	43.0	76.0	0.0	.	90
MMEL1	79258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2524344	2524344	+	Silent	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MMEL1	NM_033467	exon20	c.C1929T	p.H643H	CCGGAAGTGCTGG	.	76.0	36.0	65.0	0.0	.	90
MTSS1L	92154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70698047	70698047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MTSS1L	NM_138383	exon15	c.G1777A	p.V593M	TCTTCACAGGGAC	.	27.0	19.0	36.0	0.0	.	68
MYO1E	4643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59500993	59500993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MYO1E	NM_004998	exon14	c.G1417T	p.V473L	CACCCACCGCATG	.	95.0	37.0	76.0	0.0	.	514
NCOA7	135112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126202239	126202239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	NCOA7	NM_001199619	exon7	c.C463A	p.L155I	CAGGTCCTTTTTG	.	230.0	95.0	198.0	0.0	.	227
NDNF	79625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	121958596	121958596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	NDNF	NM_024574	exon4	c.C530A	p.P177H	TCATAGGGTAACT	.	196.0	90.0	206.0	0.0	.	90
NEB	4703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	152497166	152497166	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	NEB	NM_004543	exon61	c.A8388C	p.E2796D	ATAGCCTTCTTTG	.	119.0	47.0	109.0	0.0	.	145
OR10K1	391109	ucsc.edu;bcgsc.ca	37	1	158435495	158435495	+	Silent	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	OR10K1	NM_001004473	exon1	c.C144A	p.T48T	TTCCACCATTGTG	.	448.0	257.0	277.0	2.0	.	69
OR14A16	284532	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247978677	247978677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	OR14A16	NM_001001966	exon1	c.G355A	p.D119N	AGCGGTCAAAGGA	.	151.0	102.0	103.0	1.0	.	46
OR4C45	403257	bcgsc.ca;mdanderson.org	37	11	48373963	48373963	+	RNA	SNP	T	T	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	.	.	.	.	TGTGAGTGAGGCC	.	99.0	37.0	91.0	0.0	.	.
PAPD7	11044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	6737736	6737736	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PAPD7	NM_001171805	exon2	c.C80G	p.P27R	TTTGGCCGACGGC	.	282.0	110.0	266.0	0.0	.	69
PCDHGA12	26025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140811445	140811445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PCDHGA12	NM_032094	exon1	c.C1119A	p.D373E	AAATGACCAAGAT	.	74.0	37.0	64.0	0.0	.	27
PCSK9	255738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55527146	55527146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PCSK9	NM_174936	exon11	c.G1780A	p.A594T	AGGGAGGCCAGCA	.	176.0	76.0	135.0	0.0	.	93
PDE9A	5152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44117597	44117597	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PDE9A	NM_001001570	exon4	c.C291T	p.H97H	GTCCCACCAGGTG	.	249.0	68.0	199.0	0.0	.	92
PELI3	246330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66243202	66243202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PELI3	NM_145065	exon8	c.C974A	p.A325E	AGGAGGCAAATGC	.	104.0	41.0	65.0	0.0	.	91
PGR	5241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	100998998	100998998	+	Silent	SNP	G	G	C	rs186653307	by1000genomes	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PGR	NM_000926	exon1	c.C804G	p.V268V	CTTGGGGACCAGG	.	15.0	6.0	25.0	0.0	G|0.999;C|0.000	652
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	8113326	8113326	+	Missense_Mutation	SNP	G	G	T	rs150241349		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PLCB1	NM_015192	exon1	c.G28T	p.A10S	GTGCACGCCTTGC	.	111.0	55.0	131.0	0.0	G|1.000;T|0.000	297
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118314762	118314762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PNLIP	NM_000936	exon7	c.T644C	p.F215S	CCAAATTTGTGGA	.	69.0	48.0	120.0	0.0	.	92
PNMA2	10687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	26365742	26365742	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PNMA2	NM_007257	exon3	c.A530T	p.E177V	TCTTCCTCTGGGG	.	43.0	36.0	69.0	0.0	.	90
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89720726	89720726	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	PTEN,NS,carcinoma,0	PTEN	NM_000314	exon8	c.877delG	p.G293fs	GAAAATGGAAGTC	.	95.0	72.0	132.0	0.0	.	17735
RABGGTA	5875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24734864	24734864	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	NM_004581	exon16	c.A1661T	p.Q554L	GCCAGTTGCTCCA	.	46.0	20.0	45.0	0.0	.	.
RAI14	26064	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34807938	34807938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	RAI14	NM_001145525	exon8	c.G364T	p.G122W	AGCTCTGGGAAAA	.	222.0	95.0	196.0	2.0	.	91
RGS22	26166	bcgsc.ca;mdanderson.org	37	8	100999806	100999806	+	Silent	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	RGS22	NM_015668	exon21	c.T3060C	p.I1020I	AAAAGCAATGATT	.	24.0	22.0	29.0	1.0	.	140
SEP15	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	87379756	87379756	+	Silent	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SEP15	.	.	.	.	CGCCGGCACCAGA	.	78.0	25.0	63.0	0.0	.	68
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135176017	135176017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SETX	NM_015046	exon12	c.A5548G	p.M1850V	ACTTACTGACTGA	.	176.0	66.0	159.0	0.0	.	93
SH3RF3	344558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110015366	110015366	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SH3RF3	NM_001099289	exon4	c.C1266G	p.D422E	TGGAGACCTTGCT	.	60.0	28.0	40.0	0.0	.	24
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51169904	51169904	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SHANK1	NM_016148	exon22	c.C5313A	p.G1771G	GCTGGGGCCAGGC	.	27.0	12.0	41.0	0.0	.	153
SIRPB1	10326	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	1552656	1552656	+	Missense_Mutation	SNP	C	C	T	rs139432093	alternate_allele	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SIRPB1	NM_006065	exon3	c.G461A	p.G154D	GCAGGGCCCGATA	.	138.0	55.0	127.0	1.0	C|0.997;A|0.003	91
SLC35B1	10237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47784394	47784394	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SLC35B1	NM_005827	exon2	c.G141A	p.E47E	GAACGTCTCCTGC	.	68.0	31.0	51.0	0.0	.	90
SNX33	257364	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75942327	75942327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SNX33	NM_153271	exon1	c.C884T	p.T295I	AGGCCACTGGCCG	.	81.0	31.0	68.0	0.0	.	91
SPATA17	128153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	217915436	217915436	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SPATA17	NM_138796	exon6	c.A515T	p.K172M	GCACAAAGCAGGT	.	69.0	42.0	50.0	0.0	.	69
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54859797	54859797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SPTBN1	NM_003128	exon17	c.C3659T	p.A1220V	TGGACGCCAATGA	.	128.0	50.0	85.0	0.0	.	140
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	169639701	169639701	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	THBS2	NM_003247	exon8	c.C1122A	p.C374X	GTGGAGGCAGGAA	.	31.0	14.0	46.0	0.0	.	95
TMPRSS11D	9407	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	68693026	68693026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	TMPRSS11D	NM_004262	exon8	c.C905A	p.P302H	GAGCCAGGTGGAA	.	194.0	75.0	141.0	1.0	.	91
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	51.0	39.0	74.0	0.0	C|1.000;|0.000	70225
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179611817	179611817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	TTN	NM_133379	exon46	c.G15310A	p.E5104K	ATCGCTCTAGAGT	.	217.0	96.0	182.0	2.0	.	636
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	96579585	96579585	+	Silent	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	UGGT2	NM_020121	exon18	c.A1983G	p.T661T	ATTTAATGTGCCC	.	198.0	88.0	136.0	0.0	.	92
VN1R4	317703	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	53770065	53770065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	VN1R4	NM_173857	exon1	c.T854C	p.L285P	CTCATGAGAACAA	.	97.0	39.0	87.0	1.0	.	92
WNT6	7475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219735837	219735837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	WNT6	NM_006522	exon2	c.G169T	p.A57S	TGCCAGGCTGAGC	.	107.0	47.0	87.0	0.0	.	564
ZG16B	124220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2880717	2880717	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ZG16B	NM_145252	exon3	c.C183T	p.G61G	AGGAGGCAAGTAT	.	119.0	22.0	87.0	0.0	.	91
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71654499	71654499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ZNF638	NM_014497	exon24	c.G5500A	p.V1834I	GAGAATGTTATGG	.	26.0	8.0	21.0	0.0	.	94
ZNF708	7562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21476555	21476555	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ZNF708	NM_021269	exon4	c.T1213G	p.S405A	GAGTTGAGGACTT	.	62.0	18.0	68.0	0.0	.	516
FASLG	356	ucsc.edu;bcgsc.ca	37	1	172628546	172628547	+	Missense_Mutation	DNP	CC	CC	GA	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	.	.	.	p.P69E	CCGCTGCCACCCC	.	254.0	153.0	147.0	2.0	.	.