Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABHD13	84945	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	108882138	108882138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ABHD13	NM_032859	exon2	c.G572T	p.G191V	TTTTTGGCCGTTC	.	98.0	19.0	106.0	1.0	.	93
ACOT9	23597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23731290	23731290	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ACOT9	NM_001037171	exon9	c.A624G	p.A208A	AAATGTTGCATCC	.	189.0	131.0	145.0	0.0	.	133
ACSL6	23305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131324528	131324528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ACSL6	NM_001009185	exon6	c.C622T	p.P208S	CCCCAGGGCCCAG	.	35.0	10.0	42.0	0.0	.	229
ADAMTS9	56999	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64633644	64633644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ADAMTS9	NM_182920	exon11	c.C1682A	p.A561D	CCATCGGCCCAGG	.	21.0	4.0	20.0	0.0	.	230
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148037267	148037267	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	AFF2	NM_002025	exon11	c.A1692T	p.Q564H	CATCCAACCAATG	.	71.0	37.0	58.0	0.0	.	135
ALS2CR8	79800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	203834763	203834763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ALS2CR8	NM_024744	exon11	c.G1075A	p.V359I	AACTTGGTAGATG	.	262.0	60.0	275.0	0.0	.	136
AMER1	139285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63410478	63410478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	NM_152424	exon2	c.G2689A	p.D897N	CAGTGTCGAGAGA	.	72.0	44.0	64.0	0.0	.	.
ANKRD10	55608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111532383	111532383	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ANKRD10	NM_017664	exon6	c.C864G	p.S288S	GGTCGTGGAGGGG	.	64.0	22.0	82.0	0.0	.	226
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14764069	14764069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ANKRD30B	NM_001145029	exon7	c.C1205A	p.S402Y	AAACATCTACAAA	.	35.0	13.0	43.0	0.0	.	24
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27106592	27106592	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ARID1A	NM_006015	exon20	c.C6203G	p.S2068W	ACATCTCGGGGCA	.	38.0	17.0	32.0	0.0	.	584
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32207460	32207460	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	BAI2	NM_001703	exon9	c.G1526C	p.G509A	GGGTAGCCCTGCG	.	50.0	16.0	62.0	0.0	.	526
BNC1	646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83932654	83932654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	BNC1	NM_001717	exon4	c.G1349A	p.C450Y	GGCCTACAGTCTG	.	103.0	28.0	120.0	0.0	.	93
C16orf13	84326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	684899	684899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	C16orf13	NM_032366	exon4	c.C478T	p.L160F	ATCTGAGCATCAG	.	21.0	9.0	23.0	0.0	.	22
C2CD4C	126567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	408161	408161	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	C2CD4C	NM_001136263	exon2	c.C201T	p.A67A	CAGCGCGGCCTGT	.	61.0	19.0	62.0	0.0	.	46
C3	718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6681964	6681966	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	C3	NM_000064	exon35	c.4336_4338del	p.1446_1446del	CAGGTAGATGATG	.	51.0	15.0	67.0	0.0	.	95
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27460247	27460247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CAD	NM_004341	exon28	c.G4397T	p.G1466V	TCCCAGGATTGAT	.	43.0	18.0	62.0	0.0	.	295
CAPN9	10753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	230914797	230914797	+	Missense_Mutation	SNP	C	C	A	rs200401992	alternate_allele	TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CAPN9	NM_006615	exon9	c.C1032A	p.D344E	GGAAGACGCGATC	.	68.0	27.0	41.0	0.0	C|0.999;T|0.001	91
CCAR1	55749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70507323	70507323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CCAR1	NM_018237	exon8	c.G826A	p.A276T	CAAAAAGGTATCT	.	44.0	7.0	60.0	0.0	.	159
CCDC11	220136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	47788414	47788414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CCDC11	NM_145020	exon2	c.G245T	p.R82I	TTGATTCTTGCTC	.	122.0	45.0	148.0	0.0	.	93
CDH16	1014	ucsc.edu;mdanderson.org	37	16	66945111	66945111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CDH16	NM_004062	exon14	c.C1898T	p.T633M	AGCACCGTGTAGG	.	25.0	8.0	28.0	1.0	.	93
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	57730466	57730466	+	Missense_Mutation	SNP	A	A	G	rs141997044	byfrequency	TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CGNL1	NM_001252335	exon3	c.A269G	p.N90S	CCAGCAATGGTTC	.	76.0	11.0	88.0	0.0	A|1.000;G|0.000	100
CHST9	83539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	24496571	24496571	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CHST9	NM_031422	exon6	c.C984T	p.V328V	GAACTTGACTCCA	.	105.0	23.0	146.0	0.0	.	93
CHURC1	91612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65398907	65398907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CHURC1	NM_145165	exon4	c.A382G	p.I128V	ATCAGTATTCTCC	.	115.0	35.0	101.0	0.0	.	91
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238256451	238256451	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	COL6A3	NM_004369	exon31	c.G7028C	p.R2343T	CTTACCCTTCGGC	.	43.0	10.0	55.0	0.0	.	526
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71009833	71009833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	COL9A1	NM_001851	exon4	c.G212A	p.R71K	GCTCTTCTAGATG	.	144.0	51.0	129.0	0.0	.	94
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	A	rs28931588	bycluster	TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G94A	p.D32N	TACCTGGACTCTG	.	124.0	37.0	147.0	0.0	G|1.000;T|0.000	24361
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16882374	16882374	+	Silent	SNP	C	C	T	rs80308930	byfrequency	TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	CUBN	NM_001081	exon62	c.G9987A	p.S3329S	GTCTTGCGAGGTC	.	53.0	18.0	65.0	0.0	C|0.998;T|0.002	166
DAO	1610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109283278	109283278	+	Missense_Mutation	SNP	C	C	T	rs201583577		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DAO	NM_001917	exon4	c.C343T	p.R115W	GGATTTCGGAAGC	.	49.0	9.0	48.0	0.0	.	92
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76433836	76433836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DNAH17	NM_173628	exon74	c.C11920A	p.P3974T	TCTCGGGGCTGGG	.	47.0	16.0	42.0	0.0	.	142
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38795995	38795995	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DNAH8	NM_001206927	exon30	c.A4119G	p.E1373E	AGTTGAAGTAACC	.	55.0	13.0	44.0	0.0	.	615
DNAJB4	11080	broad.mit.edu;mdanderson.org	37	1	78479284	78479284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DNAJB4	NM_007034	exon2	c.C761T	p.A254V	ATACTGCTAAAAT	.	10.0	7.0	9.0	0.0	.	226
DNER	92737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230411752	230411752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DNER	NM_139072	exon5	c.G904A	p.V302M	CCTTCACCACCAG	.	54.0	21.0	34.0	0.0	.	524
DOCK9	23348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99533811	99533811	+	Splice_Site	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DOCK9	NM_015296	exon26	c.2748+1G>A	.	TACATACCTTAAC	.	52.0	15.0	53.0	0.0	.	90
DUSP13	51207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	76865548	76865548	+	Missense_Mutation	SNP	C	C	T	rs200574063		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DUSP13	NM_001007271	exon3	c.G446A	p.R149Q	GACAGCCGCTGGT	.	52.0	25.0	50.0	0.0	.	226
DVL2	1856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7137468	7137468	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	DVL2	NM_004422	exon1	c.C114T	p.I38I	GAGGGTGATGCGC	.	38.0	12.0	78.0	0.0	.	659
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158158108	158158108	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	EBF1	NM_024007	exon11	c.G1094C	p.R365P	GGGTGCCGAGGAA	.	34.0	8.0	29.0	0.0	.	92
ECSIT	51295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11624014	11624014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ECSIT	NM_001142464	exon4	c.C595T	p.R199C	TCAGGCGCACCAA	.	48.0	16.0	35.0	0.0	.	91
EEA1	8411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93236314	93236314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	EEA1	NM_003566	exon10	c.A842T	p.Q281L	ACTTCCTGGGGGC	.	345.0	99.0	230.0	0.0	.	229
EME2	197342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1826218	1826218	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	EME2	NM_001257370	exon8	c.C1119T	p.L373L	TGATCTCCTGCTG	.	39.0	14.0	35.0	0.0	.	229
EPB41L4A	64097	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	111600696	111600696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	EPB41L4A	NM_022140	exon6	c.G451T	p.D151Y	ATGGGTCATAATC	.	78.0	17.0	86.0	0.0	.	91
EPHA4	2043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	222347339	222347339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	EPHA4	NM_004438	exon5	c.C1051A	p.P351T	TCTGAGGGCTACT	.	83.0	31.0	71.0	0.0	.	1441
FAM208B	54906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5772683	5772683	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	NM_017782	exon11	c.A721C	p.S241R	CTGCCCAGTGGTT	.	123.0	29.0	132.0	1.0	.	.
FANCA	2175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89813065	89813065	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	FANCA	NM_000135	exon35	c.A3440T	p.D1147V	GAGGGGTCTCTGC	.	31.0	7.0	39.0	0.0	.	1130
FASLG	356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172633481	172633481	+	Silent	SNP	C	C	T	rs143306673		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	FASLG	NM_000639	exon3	c.C402T	p.P134P	CCACCCCAGTCCA	.	196.0	43.0	121.0	0.0	C|1.000;T|0.000	618
FGR	2268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27942229	27942229	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	FGR	NM_001042729	exon8	c.G809C	p.G270A	CCGGTGCCCAGCC	.	71.0	20.0	67.0	0.0	.	547
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	186671281	186671281	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	FSIP2	NM_173651	exon17	c.G17515C	p.E5839Q	GAAGAGGAAGAGA	.	61.0	5.0	70.0	0.0	.	90
GAL	51083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68455540	68455540	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	GAL	NM_015973	exon4	c.G195A	p.E65E	GCGGGAGCTGCGG	.	67.0	24.0	62.0	0.0	.	90
GPBAR1	151306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219127715	219127715	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	GPBAR1	NM_170699	exon2	c.T268G	p.L90V	GTCTACTTGGCTC	.	54.0	18.0	70.0	0.0	.	23
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54757494	54757494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	GPR84	NM_020370	exon2	c.C142A	p.Q48K	TGGGCTGGATGGC	.	50.0	14.0	55.0	0.0	.	523
GPR97	222487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57717987	57717987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	GPR97	NM_170776	exon9	c.G1025T	p.G342V	CCCGGGGGGCTGT	.	66.0	19.0	57.0	0.0	.	91
GSK3B	2932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119631579	119631579	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	GSK3B	NM_002093	exon6	c.T687G	p.F229L	GGCTCCAAAGATC	.	85.0	21.0	66.0	0.0	.	978
HCFC2	29915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	104474603	104474604	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	HCFC2	NM_013320	exon5	c.762_763del	p.254_255del	TATAGGAAACAAG	.	94.0	33.0	102.0	0.0	.	92
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160454117	160454117	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	IGF2R	NM_000876	exon9	c.A1189C	p.R397R	GCAGGAAGATACC	.	27.0	16.0	48.0	0.0	.	118
IL2RB	3560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37540187	37540187	+	Missense_Mutation	SNP	C	C	T	rs147593802		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	IL2RB	NM_000878	exon2	c.G26A	p.R9H	GGCAGACGCCAGG	.	41.0	8.0	52.0	0.0	C|1.000;T|0.000	90
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73727379	73727379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ITGB4	NM_001005731	exon10	c.G1145A	p.R382Q	GCCTTCGGACAGA	.	37.0	14.0	37.0	0.0	.	227
KCNJ13	3769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233632998	233632998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	KCNJ13	NM_002242	exon3	c.T986C	p.L329P	GAAACCAGAGGAG	.	153.0	54.0	193.0	0.0	.	90
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123267816	123267816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	KIAA1109	NM_015312	exon73	c.A12772G	p.M4258V	TATGATATGCGCC	.	63.0	21.0	52.0	0.0	.	80
KLHL11	55175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40010438	40010438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	KLHL11	NM_018143	exon2	c.A1681G	p.T561A	ATGCTGTCTGATA	.	55.0	16.0	67.0	0.0	.	90
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133914252	133914252	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	LAMC3	NM_006059	exon5	c.C978T	p.P326P	CATAGCCTGCAAC	.	25.0	11.0	24.0	0.0	.	93
LOC149950	0	broad.mit.edu;mdanderson.org	37	20	31196426	31196426	+	RNA	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	.	.	.	.	AACTCTGCCTCTC	.	13.0	3.0	17.0	0.0	.	.
LRRC6	23639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133634904	133634904	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	LRRC6	NM_012472	exon7	c.G867A	p.R289R	CAAAGTCCTGGGT	.	235.0	61.0	162.0	0.0	.	92
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90452952	90452952	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	MDN1	NM_014611	exon31	c.G4365C	p.L1455L	CTGAACCAGAGGC	.	129.0	38.0	123.0	0.0	.	100
MELK	9833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36630339	36630339	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	MELK	NM_014791	exon9	c.T710G	p.I237S	GTAGCATTCTGCT	.	61.0	20.0	59.0	0.0	.	760
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	62979151	62979151	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	MON2	NM_015026	exon33	c.A4777T	p.N1593Y	TTCAGTAATAAAG	.	148.0	47.0	162.0	0.0	.	514
NCBP1	4686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	100425320	100425320	+	Missense_Mutation	SNP	C	C	G	rs200307901	alternate_allele	TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	NCBP1	NM_002486	exon18	c.C1788G	p.N596K	GAGGAACCATCCA	.	65.0	14.0	89.0	0.0	C|0.999;A|0.000	90
NLRC3	197358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	3613898	3613898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	NLRC3	NM_178844	exon5	c.C1040A	p.T347K	GGCCCCGTCCTGC	.	17.0	7.0	13.0	0.0	.	96
NOL7	51406	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	13620548	13620548	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	NOL7	NM_016167	exon6	c.C609G	p.T203T	AGGAACCAACAGG	.	103.0	6.0	132.0	0.0	.	90
NPAP1	23742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	24923800	24923800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	NM_018958	exon1	c.C2786A	p.T929K	GCTTAACATCTCC	.	35.0	8.0	33.0	0.0	.	.
NPM1	4869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170837534	170837534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	NPM1	NM_002520	exon11	c.A850G	p.I284V	CAGGCTATTCAAG	.	28.0	9.0	29.0	0.0	.	12448
OLFM1	10439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138011380	138011380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	OLFM1	NM_014279	exon6	c.C760T	p.R254C	AACAACCGCTTCG	.	42.0	11.0	71.0	0.0	.	70
OR5AC2	81050	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	97806470	97806470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	OR5AC2	NM_054106	exon1	c.G454T	p.V152L	TCATATGTAATTG	.	97.0	32.0	108.0	1.0	.	69
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587559	55587559	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	OR5D18	NM_001001952	exon1	c.T454A	p.W152R	TATGCCTGGGGAG	.	177.0	58.0	206.0	0.0	.	71
OR6C76	390326	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55820492	55820492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	OR6C76	NM_001005183	exon1	c.T455C	p.V152A	TCTTGGTAATTTT	.	96.0	29.0	83.0	1.0	.	68
OSBPL3	26031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24904971	24904971	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	OSBPL3	NM_145321	exon7	c.A663C	p.K221N	GGAGCATTTTTCC	.	106.0	21.0	118.0	0.0	.	204
PASD1	139135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150842573	150842573	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PASD1	NM_173493	exon15	c.C2090G	p.S697C	AGTTGTCTGATTC	.	47.0	29.0	69.0	0.0	.	133
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30724818	30724818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PCDH7	NM_032457	exon1	c.C1774A	p.L592M	GACATCCTGGTCA	.	38.0	11.0	54.0	0.0	.	229
PCDHA1	56147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140167891	140167891	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PCDHA1	NM_031410	exon1	c.C2016T	p.S672S	GGAGAGCGGCCAG	.	57.0	12.0	51.0	0.0	.	23
PCDP1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	120385299	120385299	+	Silent	SNP	G	G	A	rs202085071		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	NM_001271049	exon16	c.G1587A	p.S529S	TGTGTCGCCCAAG	.	134.0	45.0	126.0	0.0	G|0.999;A|0.001	.
PDE8A	5151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85664189	85664189	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PDE8A	NM_002605	exon18	c.G1896A	p.L632L	GGCCTTGGCCTTC	.	68.0	28.0	60.0	0.0	.	94
PEG3	5178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57325652	57325652	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PEG3	NM_001146184	exon9	c.G4158A	p.R1386R	CTGAATCCTCAGA	.	65.0	19.0	72.0	2.0	.	164
PLA2G4E	123745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	42280320	42280320	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	NM_001206670	exon16	c.G1758T	p.L586L	GGCATCCAGCAGG	.	32.0	14.0	41.0	0.0	.	.
POLR3F	10621	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	18464200	18464200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	POLR3F	NM_006466	exon9	c.T949C	p.X317Q	GAATTTTAATAGA	.	36.0	8.0	36.0	0.0	.	90
PRAME	23532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22892516	22892516	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PRAME	NM_206954	exon5	c.C585T	p.L195L	CTCAATGAGGTAG	.	70.0	18.0	57.0	0.0	.	515
PSMB5	5693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23495455	23495455	+	Missense_Mutation	SNP	T	T	C	rs60224002		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PSMB5	NM_002797	exon3	c.A635G	p.Y212C	AGATCATAGGCCT	.	60.0	14.0	79.0	0.0	T|0.998;C|0.002	91
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141756887	141756887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	PTK2	NM_005607	exon18	c.T1556C	p.I519T	ATGATTATCCAGA	.	84.0	9.0	64.0	0.0	.	1517
PXDN	7837	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1668790	1668790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	PXDN,NS,NS,0	PXDN	NM_012293	exon11	c.G1348A	p.V450M	AATCCACGGTCTG	.	27.0	9.0	23.0	0.0	.	166
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74290071	74290071	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	QRICH2	NM_032134	exon4	c.A239T	p.H80L	CCTCCGTGCTTAG	.	29.0	12.0	42.0	0.0	.	94
RBFOX1	54715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	7760685	7760685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	RBFOX1	NM_145891	exon13	c.G1195T	p.V399F	GGTCTCGTTCTTT	.	112.0	27.0	116.0	0.0	.	92
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48060868	48060868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SEMA6D	NM_153618	exon18	c.C1856A	p.T619K	AACTGACAAGCTC	.	61.0	15.0	62.0	0.0	.	138
SLC1A2	6506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	35308464	35308464	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SLC1A2	NM_004171	exon8	c.G1126C	p.E376Q	TTTCTTCCAGGCA	.	60.0	24.0	61.0	0.0	.	516
SLC1A3	6507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	36686198	36686198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SLC1A3	NM_004172	exon10	c.G1456A	p.G486R	GTACTGGGAGACT	.	81.0	6.0	89.0	0.0	.	90
SLC44A3	126969	hgsc.bcm.edu;bcgsc.ca	37	1	95357851	95357859	+	In_Frame_Del	DEL	TTTCACTGT	TTTCACTGT	-	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	TTTCACTGT	TTTCACTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SLC44A3	NM_001114106	exon14	c.1635_1643del	p.545_548del	GGTGTGTTTCACT	.	233.0	49.0	332.0	0.0	.	91
SMEK2	57223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55825809	55825809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SMEK2	NM_001122964	exon4	c.G664A	p.V222I	CCACGACATCCAT	.	137.0	46.0	94.0	0.0	.	228
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228855885	228855885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SPHKAP	NM_001142644	exon11	c.C4790T	p.P1597L	GTAGGCGGTCCAG	.	92.0	24.0	100.0	0.0	.	167
SPOCK1	6695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	136314459	136314459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SPOCK1	NM_004598	exon11	c.C1204T	p.R402W	GCTCCCGTTCATA	.	139.0	30.0	143.0	0.0	.	91
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42178394	42178394	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SPTBN5	NM_016642	exon7	c.C954T	p.T318T	CTCCTGGGTGCGG	.	69.0	19.0	60.0	0.0	.	91
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	17721042	17721042	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SREBF1	NM_001005291	exon8	c.1462delG	p.E488fs	CAGGCTCCGAGTC	.	28.0	12.0	54.0	0.0	.	91
STEAP4	79689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87910335	87910335	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	STEAP4	NM_001205315	exon5	c.T1044C	p.Y348Y	AGCCACATATGAA	.	112.0	30.0	97.0	0.0	.	90
SULF2	55959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46365635	46365635	+	Missense_Mutation	SNP	G	G	A	rs201248076		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SULF2	NM_001161841	exon3	c.C227T	p.A76V	AAGTGCGCCCCGC	.	104.0	27.0	98.0	0.0	G|0.999;A|0.000	293
SUPT20H	55578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37605935	37605935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	NM_017569	exon11	c.A808G	p.K270E	TTCTTTTTTGTAA	.	218.0	63.0	179.0	0.0	.	.
SYK	6850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	93650155	93650155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	SYK	NM_003177	exon12	c.G1706T	p.G569V	CCTATGGGCAGAA	.	107.0	8.0	118.0	0.0	.	1402
TCEB3B	51224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44560133	44560133	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TCEB3B	NM_016427	exon1	c.T1503A	p.A501A	GAAAGCAGCTTCC	.	60.0	14.0	52.0	0.0	.	156
TIGD7	91151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3350103	3350103	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TIGD7	NM_033208	exon2	c.T512A	p.L171Q	TGAGCTAGACACA	.	157.0	54.0	136.0	0.0	.	90
TMUB2	79089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42266396	42266396	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TMUB2	NM_001076674	exon3	c.C42T	p.D14D	CGTGGACCCTGCC	.	79.0	20.0	60.0	0.0	.	91
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7579591	7579591	+	Splice_Site	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	TP53,NS,carcinoma,0	TP53	NM_000546	exon5	c.97-1G>A	.	GGGGGACTGTAGA	.	30.0	9.0	30.0	0.0	.	70225
TPSD1	23430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1306673	1306673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TPSD1	NM_012217	exon2	c.C239T	p.A80V	CCGCGGCGCACTG	.	67.0	22.0	65.0	0.0	.	90
TREM1	54210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41250178	41250178	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TREM1	NM_001242590	exon2	c.G361C	p.E121Q	GAGGCTCCTTGGG	.	84.0	22.0	95.0	0.0	.	577
TRIM26	7726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30156977	30156977	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TRIM26	NM_003449	exon10	c.905-1G>T	.	GCTTCCCTGGGGA	.	30.0	7.0	39.0	0.0	.	206
TTLL6	284076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	46878909	46878909	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TTLL6	NM_001130918	exon4	c.T458A	p.V153E	TCCATCACCCGCT	.	68.0	29.0	96.0	0.0	.	90
TTYH2	94015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72233606	72233606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	TTYH2	NM_032646	exon4	c.G588T	p.M196I	CACCATGGAGCTG	.	36.0	12.0	41.0	0.0	.	138
UBAC1	10422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138837090	138837090	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	UBAC1	NM_016172	exon7	c.G660T	p.S220S	AGGCACCGACATG	.	39.0	17.0	31.0	0.0	.	92
UBE2Z	65264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	46988176	46988176	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	NM_023079	exon2	c.C324T	p.I108I	GGATATCATGTCC	.	78.0	20.0	67.0	0.0	.	.
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33495177	33495177	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	UNC45B	NM_001267052	exon10	c.C1249G	p.L417V	CAGCTGCTGGGAC	.	82.0	29.0	86.0	0.0	.	157
WDR90	197335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	709346	709346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	WDR90	NM_145294	exon26	c.G3154A	p.V1052I	CTGGGCGTCTGTG	.	50.0	13.0	92.0	0.0	.	92
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168098387	168098387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	XIRP2	NM_001199143	exon9	c.C1242A	p.D414E	TTCTGACAAAGAG	.	57.0	19.0	50.0	0.0	.	104
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168106758	168106758	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	XIRP2	NM_152381	exon9	c.A8856G	p.E2952E	ACGTGAAGAACTG	.	136.0	37.0	177.0	0.0	.	104
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	81412438	81412438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZBTB10	NM_023929	exon2	c.A1682G	p.N561S	TTTGGAATAATAT	.	121.0	55.0	110.0	0.0	.	522
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	207174747	207174747	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZDBF2	NM_020923	exon5	c.G5495A	p.W1832X	AAACATGGTCTCA	.	74.0	20.0	96.0	0.0	.	3
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	72030765	72030766	+	Frame_Shift_Ins	INS	-	-	ATTA	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZFC3H1	NM_144982	exon8	c.1800_1801insTAAT	p.P600fs	TGGTAATGGTGGT	.	136.0	23.0	91.0	0.0	.	138
ZNF267	10308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31927163	31927163	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZNF267	NM_003414	exon4	c.T1593G	p.C531W	TACTTGTTTCTCA	.	56.0	14.0	52.0	0.0	.	138
ZNF28	7576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53304474	53304474	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZNF28	NM_006969	exon4	c.A624T	p.V208V	CATGTGTACATTC	.	66.0	22.0	64.0	0.0	.	91
ZNF335	63925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44592256	44592256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZNF335	NM_022095	exon9	c.G1389T	p.R463S	GAAGGGCCTCAAA	.	58.0	18.0	78.0	0.0	.	94
ZNF415	55786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53612425	53612425	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZNF415	NM_018355	exon4	c.G873A	p.R291R	AACTCTCCGATGT	.	65.0	19.0	58.0	0.0	.	91
ZNF436	80818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23689096	23689096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	ZNF436	NM_001077195	exon4	c.G779A	p.S260N	CTCCGGCTGAAGC	.	87.0	36.0	115.0	0.0	.	153
OR2T12	127064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248458788	248458789	+	Missense_Mutation	DNP	GG	GG	TA	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	.	.	.	p.A31V	AACGGTGGCCAGA	.	202.0	51.0	221.0	0.0	.	.
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74227627	74227628	+	Missense_Mutation	DNP	GT	GT	AA	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	.	.	.	p.T432L	GCAACTGTCTGTC	.	96.0	28.0	106.0	0.0	.	.
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151878921	151878922	+	Missense_Mutation	DNP	AG	AG	TA	novel		TCGA-UB-A7MD-01A-12D-A34Z-10	TCGA-UB-A7MD-10A-01D-A34Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d48970c7-b709-4f1b-99d3-3a4d1654738b	d3214cb5-374d-4e2f-b712-07dfcb82966a	.	.	.	.	.	p.T2008I	TGGTTTAGTAAAG	.	92.0	35.0	75.0	0.0	.	.