Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43846137	43846137	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ADAMTS20	NM_025003	exon14	c.T2019A	p.V673V	ATCTTCAACCATA	.	75.0	14.0	85.0	0.0	.	795
ADRA2C	152	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3768933	3768933	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ADRA2C	NM_000683	exon1	c.G600A	p.P200P	CTACCCGCAGTGC	.	20.0	5.0	37.0	0.0	.	522
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61833020	61833020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ANK3	NM_020987	exon37	c.C7619T	p.T2540I	AACACTGTCACTT	.	111.0	46.0	127.0	0.0	.	107
ANXA9	8416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150960818	150960818	+	Splice_Site	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ANXA9	NM_003568	exon12	c.852+1G>A	.	CTCCAGGTGAGAG	.	119.0	43.0	80.0	0.0	.	90
APEH	327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49720485	49720485	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	APEH	NM_001640	exon21	c.C1999T	p.L667L	ACACCACTGTTAC	.	58.0	26.0	96.0	0.0	.	91
APOBEC3D	140564	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39421641	39421641	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	APOBEC3D	NM_152426	exon4	c.T570C	p.Y190Y	CAATTATGCATCC	.	110.0	40.0	117.0	1.0	.	180
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157522371	157522371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ARID1B	NM_020732	exon18	c.A4643G	p.N1548S	TGCCAAATCACAT	.	50.0	20.0	45.0	0.0	.	154
ATP6V0A4	50617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138394421	138394421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ATP6V0A4	NM_130841	exon20	c.C2377G	p.L793V	TCAGAAGGATGGC	.	155.0	72.0	209.0	0.0	.	91
ATP6V0D1	9114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67472440	67472440	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ATP6V0D1	NM_004691	exon8	c.T1047A	p.P349P	GAAGATAGGGATG	.	98.0	26.0	132.0	0.0	.	90
B3GNTL1	146712	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80915065	80915065	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	B3GNTL1	NM_001009905	exon10	c.922delG	p.D308fs	GAGAGTCCTCGTG	.	116.0	24.0	153.0	0.0	.	92
BPIFB4	149954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31672750	31672750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	.	NM_182519	exon4	c.G730T	p.G244C	CTGCCCGGCGTGG	.	16.0	5.0	20.0	0.0	.	.
C11orf49	79096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	47182742	47182743	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	C11orf49	NM_001003676	exon8	c.822_823insT	p.L274fs	ACGGCTGTAAGTG	.	79.0	17.0	101.0	0.0	.	90
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219225307	219225307	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	C2orf62	NM_198559	exon5	c.C387T	p.L129L	CATCCTCCCCATG	.	39.0	10.0	41.0	0.0	.	68
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	1260417	1260417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CACNA1H	NM_021098	exon19	c.A3893G	p.H1298R	TTGATCACGTGGT	.	54.0	23.0	90.0	0.0	.	67
CBL	867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119103248	119103248	+	Missense_Mutation	SNP	C	C	T	rs147438359		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CBL	NM_005188	exon2	c.C286T	p.R96C	CATCTCCGTACTA	.	63.0	19.0	81.0	0.0	C|1.000;T|0.000	4020
CES3	23491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67006828	67006828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CES3	NM_024922	exon13	c.C1592A	p.P531Q	TCAACCCAGTGCC	.	83.0	38.0	109.0	0.0	.	517
CLEC4D	338339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8672896	8672896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CLEC4D	NM_080387	exon5	c.G459T	p.Q153H	AGGTCAGTGGCGT	.	102.0	14.0	111.0	0.0	.	90
CLEC6A	93978	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8612254	8612254	+	Silent	SNP	T	T	C	rs142509792	byfrequency;alternate_allele	TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CLEC6A	NM_001007033	exon3	c.T183C	p.H61H	ATATCATTCAAGT	.	101.0	37.0	81.0	0.0	T|0.999;A|0.001	135
COL6A2	1292	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47542411	47542411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	COL6A2	NM_058175	exon20	c.G1574A	p.G525E	CACAGGGAGAAAA	.	113.0	25.0	100.0	1.0	.	515
COLGALT1	79709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	17692114	17692114	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	.	NM_024656	exon12	c.G1730A	p.W577X	TCGTATGGAACAA	.	155.0	27.0	169.0	0.0	.	.
CRISPLD1	83690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75929298	75929298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CRISPLD1	NM_031461	exon9	c.G946T	p.G316C	CCTGCTGGCTGTT	.	158.0	23.0	214.0	0.0	.	91
CWC22	57703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	180853328	180853332	+	Frame_Shift_Del	DEL	TGATA	TGATA	-	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	TGATA	TGATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CWC22	NM_020943	exon3	c.67_71del	p.23_24del	TTCCTCTGATATG	.	162.0	14.0	183.0	0.0	.	90
CYTH1	9267	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76696458	76696458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	CYTH1	NM_017456	exon7	c.G505A	p.A169T	GCTGGGCAAACGC	.	92.0	10.0	131.0	1.0	.	228
DBP	1628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49136708	49136708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	DBP	NM_001352	exon3	c.A755G	p.E252G	TTCTGCTCCTCCG	.	69.0	18.0	75.0	0.0	.	90
DISC1	27185	hgsc.bcm.edu;broad.mit.edu	37	1	231931028	231931028	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	DISC1	NM_001164537	exon8	c.G1771T	p.E591X	CTTAAAGAAATCA	.	85.0	5.0	71.0	0.0	.	91
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13788992	13788992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	DNAH5	NM_001369	exon51	c.A8480G	p.K2827R	ACACGTTTACACT	.	183.0	116.0	141.0	0.0	.	182
DNAJB13	374407	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	73681145	73681145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	DNAJB13	NM_153614	exon8	c.G937A	p.A313T	CGCCAGGCATTGC	.	84.0	23.0	105.0	1.0	.	90
DNAJB7	150353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41257117	41257117	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	DNAJB7	NM_145174	exon1	c.A882C	p.K294N	CTTCTTTTTTTTC	.	159.0	62.0	149.0	0.0	.	227
DPEP2	64174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68026979	68026979	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	DPEP2	NM_022355	exon2	c.T137A	p.L46Q	GCGCCCAGCGTGG	.	59.0	22.0	65.0	0.0	.	91
EFCAB3	146779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	60493662	60493662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	EFCAB3	NM_001144933	exon12	c.G1445A	p.R482Q	GAAAACGGAAAGG	.	50.0	15.0	75.0	0.0	.	227
EFHA1	221154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	22077105	22077105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	EFHA1	NM_152726	exon9	c.T893C	p.I298T	CAATAAATATCTT	.	62.0	40.0	84.0	0.0	.	90
EIF5A	1984	broad.mit.edu;mdanderson.org	37	17	7212998	7212998	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	EIF5A	NM_001143760	exon2	c.C134G	p.S45X	GGGCCTCAGCCAC	.	40.0	16.0	41.0	2.0	.	90
ELANE	1991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	855638	855638	+	Silent	SNP	C	C	T	rs146878885		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ELANE	NM_001972	exon4	c.C441T	p.N147N	GGGCAACGGGGTG	.	31.0	5.0	25.0	0.0	C|1.000;T|0.000	91
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177226365	177226365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	FAM5B	NM_021165	exon4	c.G514A	p.E172K	AAGACAGAGACAA	.	282.0	80.0	251.0	0.0	.	28
FAM69B	138311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139617859	139617859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	FAM69B	NM_152421	exon5	c.A929G	p.D310G	CCTACGACTTCAA	.	91.0	22.0	131.0	0.0	.	90
FAM72A	729533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	206145524	206145525	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	FAM72A	NM_001123168	exon3	c.301_302insTC	p.F101fs	GGACACTTCTGGA	.	596.0	93.0	481.0	0.0	.	68
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127680141	127680141	+	Silent	SNP	G	G	T	rs142809999	alternate_allele	TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	FBN2	NM_001999	exon25	c.C3279A	p.I1093I	GCTTCCGATTGTA	.	74.0	17.0	122.0	0.0	G|0.999;A|0.000	146
FIG4	9896	broad.mit.edu;mdanderson.org	37	6	110107511	110107511	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	FIG4	NM_014845	exon18	c.G1955C	p.C652S	TTATCTGTGCTGT	.	60.0	6.0	52.0	0.0	.	69
GNAL	2774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	11753928	11753928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	GNAL	NM_182978	exon4	c.A608G	p.D203G	TCACTGACTTTGA	.	207.0	91.0	184.0	0.0	.	228
GPC2	221914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99769820	99769820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	GPC2	NM_152742	exon6	c.G913A	p.D305N	GCTTATCAGCCAG	.	51.0	5.0	50.0	0.0	.	154
GPC6	10082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	94680117	94680117	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	GPC6	NM_005708	exon4	c.T846C	p.A282A	TCAGGCTGACCTC	.	178.0	12.0	85.0	0.0	.	90
GPR63	81491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97246394	97246394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	GPR63	NM_030784	exon2	c.G1214A	p.R405H	CTAGGACGTATCC	.	163.0	69.0	159.0	0.0	.	92
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105795190	105795190	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	GRIA4	NM_001077243	exon12	c.T1542A	p.S514S	CTTTTCTAAGCCC	.	100.0	20.0	104.0	0.0	.	230
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	102134211	102134211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	GRIK2	NM_021956	exon6	c.C934A	p.L312M	GGTTTGCTGGATG	.	117.0	15.0	124.0	0.0	.	157
HOXC11	3227	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	54367576	54367576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	HOXC11	NM_014212	exon1	c.C551T	p.P184L	AGGCACCCCCGGC	.	74.0	13.0	70.0	0.0	.	683
INTS7	25896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	212190324	212190324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	INTS7	NM_015434	exon4	c.A413G	p.N138S	TGAGCATTCTTCC	.	223.0	76.0	183.0	0.0	.	90
KANSL1	284058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	44110522	44110526	+	Frame_Shift_Del	DEL	GCAGG	GCAGG	-	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	GCAGG	GCAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	.	NM_001193466	exon13	c.2757_2761del	p.919_921del	TGGCATGCAGGGC	.	65.0	14.0	82.0	0.0	.	.
KCNU1	157855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	36675256	36675256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	KCNU1	NM_001031836	exon10	c.A1084G	p.T362A	ATCAACACTGAAA	.	59.0	25.0	115.0	0.0	.	23
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	24832181	24832187	+	Frame_Shift_Del	DEL	TCAAGCG	TCAAGCG	-	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	TCAAGCG	TCAAGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	KIAA1217	NM_019590	exon19	c.3982_3988del	p.1328_1330del	ACAGAATCAAGCG	.	117.0	32.0	118.0	0.0	.	98
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	134999499	134999499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	KNDC1	NM_152643	exon6	c.G647A	p.R216Q	GCTGGCGGGAGAG	.	67.0	15.0	37.0	0.0	.	229
LGSN	51557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	64004842	64004842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	LGSN	NM_016571	exon2	c.G139A	p.E47K	CCGTTTCTCCCAC	.	129.0	49.0	128.0	0.0	.	227
MCF2L	23263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113750685	113750685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MCF2L	NM_001112732	exon28	c.G3076A	p.V1026I	CACCAGGTTCCAG	.	190.0	18.0	107.0	0.0	.	228
MLST8	64223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2257035	2257035	+	Splice_Site	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MLST8	NM_022372	exon5	c.345-1G>C	.	CCCGCAGGTCCCG	.	152.0	34.0	189.0	0.0	.	392
MOSPD2	158747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	14915353	14915353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MOSPD2	NM_152581	exon5	c.A470G	p.N157S	GAATAAATAGCAT	.	93.0	82.0	94.0	0.0	.	130
MUC16	94025	hgsc.bcm.edu;broad.mit.edu	37	19	8996440	8996440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MUC16	NM_024690	exon61	c.C41132G	p.P13711R	GGGTCAGGGTGGT	.	90.0	12.0	120.0	0.0	.	566
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23894029	23894029	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MYH7	NM_000257	exon22	c.G2628C	p.K876N	CACCATCTTCTCC	.	79.0	19.0	73.0	0.0	.	94
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10307686	10307686	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MYH8	NM_002472	exon22	c.C2649A	p.L883L	TTTTAAGAGAGTG	.	93.0	29.0	133.0	0.0	.	101
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76527267	76527267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MYO6	NM_004999	exon2	c.G3A	p.M1I	AAAAATGGAGGAT	.	97.0	47.0	94.0	0.0	.	92
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1926072	1926072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	MYT1L	NM_015025	exon10	c.C1469A	p.P490Q	TAGTATGGCTTTT	.	122.0	26.0	100.0	0.0	.	95
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20057523	20057523	+	Silent	SNP	C	C	A	rs199691877	alternate_allele	TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NAV2	NM_001244963	exon13	c.C2856A	p.S952S	CAGCTCCGTCAGC	.	97.0	36.0	113.0	0.0	C|0.999;T|0.000	96
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	36202217	36202217	+	Splice_Site	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NBEA	NM_015678	exon49	c.7450-1G>T	.	ATTTCAGGCCCTA	.	57.0	18.0	113.0	0.0	.	144
NDUFA10	4705	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240946749	240946749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NDUFA10	NM_004544	exon7	c.C788A	p.A263D	TCTTGAGCTTCCC	.	61.0	6.0	76.0	0.0	.	514
NEDD4L	23327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56033299	56033299	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NEDD4L	NM_001144967	exon21	c.A1902G	p.R634R	TCGGAGAATTATG	.	68.0	26.0	67.0	0.0	.	658
NFAT5	10725	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	69726159	69726159	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NFAT5	NM_138713	exon13	c.2431delG	p.G811fs	AGCAGTGGAAGTG	.	70.0	17.0	66.0	0.0	.	90
NKTR	4820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42672063	42672063	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NKTR	NM_005385	exon7	c.G400C	p.D134H	CACCTGGATGGGT	.	89.0	12.0	141.0	0.0	.	93
NKX6-3	157848	broad.mit.edu;mdanderson.org	37	8	41504161	41504161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NKX6-3	NM_152568	exon2	c.C215T	p.P72L	GACGAGGGCTCCA	.	21.0	5.0	26.0	0.0	.	90
NOVA2	4858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46457193	46457193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NOVA2	NM_002516	exon3	c.C241T	p.R81W	ATACCCGCTCTGT	.	77.0	23.0	100.0	0.0	.	226
NPR1	4881	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153654209	153654209	+	Silent	SNP	C	C	T	rs200678502		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NPR1	NM_000906	exon4	c.C1065T	p.D355D	CCACGACGGGCTC	.	214.0	89.0	178.0	1.0	C|0.999;T|0.001	393
NR4A2	4929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	157186301	157186301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	NR4A2	NM_006186	exon3	c.C398T	p.P133L	AAGCCCGGGGTGG	.	66.0	9.0	70.0	0.0	.	189
OR2L3	391192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248224001	248224001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	OR2L3	NM_001004687	exon1	c.A18T	p.Q6H	CAATCAAACATCA	.	180.0	80.0	160.0	0.0	.	68
OR52R1	119695	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4825734	4825734	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	OR52R1	.	.	.	.	TGATTGGGTTTGA	.	87.0	34.0	82.0	0.0	.	69
OR8G2	26492	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124095563	124095563	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	.	NM_001007249	exon1	c.T166G	p.L56V	GGCAACTTGAGCA	.	85.0	15.0	96.0	0.0	.	.
OR9A2	135924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142723964	142723964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	OR9A2	NM_001001658	exon1	c.T256C	p.F86L	CCAGGAAGAGCAA	.	101.0	24.0	160.0	0.0	.	69
P2RY1	5028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	152554423	152554423	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	P2RY1	NM_002563	exon1	c.G852C	p.L284F	GAACTTGAGGGCC	.	88.0	42.0	117.0	0.0	.	500
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9520141	9520141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PAK7	NM_177990	exon10	c.G2128T	p.V710F	GGGGGACGATGCA	.	116.0	57.0	112.0	0.0	.	1434
PC	5091	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	66639215	66639215	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PC	NM_000920	exon4	c.C264T	p.R88R	CAGGCCGCGGCCG	.	42.0	10.0	37.0	1.0	.	228
PCSK7	9159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117096683	117096683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PCSK7	NM_004716	exon6	c.A824G	p.N275S	TGCTTGTTGAACG	.	42.0	22.0	54.0	0.0	.	658
PIK3C2A	5286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17153463	17153463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PIK3C2A	NM_002645	exon11	c.T2231C	p.L744P	ACTTACAGTTCAT	.	215.0	41.0	174.0	0.0	.	1310
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94354053	94354053	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PIWIL4	NM_152431	exon20	c.T2454G	p.S818R	AGTCAGTGTCCCA	.	76.0	17.0	90.0	0.0	.	91
PLCB1	23236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8862417	8862417	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PLCB1	NM_015192	exon32	c.T3572T	p.V1191V	ACCCTGGAAAAGT	.	159.0	35.0	166.0	1.0	.	297
PLCG1	5335	hgsc.bcm.edu;broad.mit.edu	37	20	39802162	39802162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PLCG1	NM_182811	exon28	c.A3382G	p.T1128A	CAGAAGACAGAGT	.	45.0	4.0	49.0	0.0	.	911
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81922840	81922840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PLCG2	NM_002661	exon10	c.A829T	p.M277L	GACACCATGCGTG	.	107.0	23.0	105.0	0.0	.	892
POTEH	23784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	16287459	16287459	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	POTEH	NM_001136213	exon1	c.T427A	p.F143I	AGGGGAAGCAGTG	.	607.0	108.0	743.0	0.0	.	1
PTGDR	5729	broad.mit.edu;bcgsc.ca	37	14	52735356	52735356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	PTGDR	NM_000953	exon1	c.C824A	p.T275N	TCTTCACTATGTG	.	84.0	5.0	79.0	0.0	.	524
RAI1	10743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17696772	17696772	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	RAI1	NM_030665	exon3	c.C510T	p.S170S	TCACTCCCTGCAC	.	81.0	14.0	149.0	0.0	.	91
RASSF4	83937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45478109	45478109	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	RASSF4	NM_032023	exon4	c.T279A	p.P93P	CTGCCCTCTGTGA	.	81.0	31.0	99.0	0.0	.	290
RIPK1	8737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	3106166	3106166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	RIPK1	NM_003804	exon8	c.C1457T	p.P486L	CAGGTCCCAGAGT	.	254.0	109.0	204.0	0.0	.	1044
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	93023242	93023242	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	RUNX1T1	NM_001198679	exon5	c.C723A	p.I241I	AAATGGGATGACA	.	76.0	35.0	102.0	0.0	.	1196
SCARA5	286133	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27764734	27764734	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SCARA5	NM_173833	exon6	c.T1027A	p.L343M	CGGGCAATCCTGG	.	21.0	6.0	45.0	0.0	.	91
SDK1	221935	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4245592	4245592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SDK1	NM_152744	exon36	c.C5180T	p.P1727L	CACCCCCGGAGAG	.	117.0	39.0	134.0	0.0	.	138
SF3A1	10291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30733037	30733037	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SF3A1	NM_005877	exon13	c.A2084T	p.E695V	AACTCCTCCTCTG	.	106.0	41.0	109.0	0.0	.	157
SH3GL3	6457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	84241337	84241337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SH3GL3	NM_003027	exon5	c.G352C	p.G118R	GAAGTTGGTGAAT	.	77.0	24.0	74.0	0.0	.	92
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52001422	52001422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SIGLEC12	NM_053003	exon5	c.A1255G	p.T419A	TCAGGGTCAGGCT	.	36.0	19.0	63.0	0.0	.	96
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85279232	85279232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SLC6A15	NM_018057	exon4	c.A556G	p.K186E	CATTTTTCACCAA	.	214.0	86.0	234.0	0.0	.	93
SSX5	6758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48054255	48054255	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SSX5	NM_021015	exon4	c.A228T	p.K76N	CCACTCTTTCTCA	.	145.0	105.0	178.0	0.0	.	90
STAT1	6772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191841668	191841668	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	STAT1	NM_007315	exon22	c.G1957C	p.V653L	CCATGACTTTGTA	.	106.0	59.0	131.0	0.0	.	1335
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119951206	119951206	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	SYNPO2	NM_001128934	exon4	c.G1276C	p.E426Q	GAGGAAGAAGGTG	.	125.0	93.0	138.0	0.0	.	92
TARM1	441864	hgsc.bcm.edu;broad.mit.edu	37	19	54577312	54577312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	.	NM_001135686	exon4	c.G518A	p.S173N	GCTGGACTCTGCA	.	134.0	9.0	114.0	0.0	.	.
TBX3	6926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	115109981	115109981	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TBX3	NM_016569	exon8	c.A1897T	p.T633S	GCATGGTGTTCAG	.	46.0	26.0	49.0	0.0	.	93
TCERG1L	256536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	133058601	133058601	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TCERG1L	NM_174937	exon4	c.G777A	p.P259P	GGGGGACGGGCCC	.	37.0	13.0	29.0	0.0	.	138
TET1	80312	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70450720	70450720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TET1	NM_030625	exon12	c.A5560G	p.T1854A	CCGAAGACTGCTT	.	82.0	31.0	88.0	1.0	.	663
TMEM200C	645369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	5890394	5890394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	.	NM_001080209	exon1	c.C1669G	p.Q557E	GCGTTTGACCAGC	.	49.0	8.0	50.0	0.0	.	.
TMOD3	29766	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	52194155	52194155	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TMOD3	NM_014547	exon9	c.C946G	p.L316V	AATATCCTTAAAT	.	221.0	86.0	224.0	1.0	.	91
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175335172	175335172	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TNR	NM_003285	exon11	c.C2156G	p.T719S	GTAAAGGTAATTC	.	172.0	91.0	131.0	0.0	.	324
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	32550784	32550784	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TOPORS	NM_005802	exon2	c.G186A	p.P62P	GGATGCCGGCGCA	.	245.0	95.0	195.0	0.0	.	230
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578205	7578205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	TP53,NS,carcinoma,+1	TP53	NM_000546	exon6	c.G644T	p.S215I	ACCACACTATGTC	.	121.0	57.0	144.0	0.0	.	70225
TPP2	7174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103328668	103328668	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TPP2	NM_003291	exon28	c.A3563T	p.H1188L	ATAAACATGCATT	.	673.0	451.0	312.0	0.0	.	92
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	141294100	141294100	+	Missense_Mutation	SNP	C	C	T	rs147687394		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TRAPPC9	NM_031466	exon14	c.G2296A	p.G766S	ACACACCGAAGAC	.	73.0	10.0	102.0	0.0	C|1.000;T|0.000	228
TSLP	85480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	110409224	110409224	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	TSLP	NM_033035	exon3	c.G232T	p.E78X	CTTACTGAAATCC	.	251.0	42.0	311.0	0.0	.	90
UCP1	7350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	141489132	141489132	+	Splice_Site	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	UCP1	NM_021833	exon3	c.127-1G>A	.	TTGGACCTGGAAA	.	43.0	32.0	50.0	0.0	.	91
UGT2B4	7363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70359471	70359471	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	UGT2B4	NM_021139	exon2	c.C810G	p.L270L	TGGTAAGAGTGGG	.	111.0	60.0	87.0	0.0	.	92
UGT2B4	7363	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70351040	70351040	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	UGT2B4	NM_021139	exon5	c.A1196C	p.Q399P	TCAGGTTGATCTG	.	418.0	74.0	306.0	2.0	.	92
USB1	79650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58036446	58036446	+	Silent	SNP	G	G	A	rs143792185	byfrequency	TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	.	NM_024598	exon2	c.G162A	p.P54P	GTTCCCGGGCACC	.	75.0	29.0	86.0	0.0	G|0.999;A|0.001	.
VAC14	55697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70820268	70820268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	VAC14	NM_018052	exon2	c.G105T	p.K35N	GACCAGCCTGGAG	.	58.0	31.0	66.0	0.0	.	227
VENTX	27287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	135053718	135053718	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	VENTX	NM_014468	exon3	c.C685G	p.P229A	TCCCACCCCCCTA	.	40.0	18.0	37.0	0.0	.	90
XPO7	23039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21827677	21827677	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	XPO7	NM_015024	exon4	c.T282C	p.L94L	CTACCTTGCCACT	.	52.0	12.0	86.0	0.0	.	273
ZNF175	7728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52091277	52091277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ZNF175	NM_007147	exon5	c.G1693A	p.G565R	GAATGTGGGAAAG	.	63.0	6.0	82.0	0.0	.	90
ZNF385D	79750	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	21462743	21462743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ZNF385D	NM_024697	exon8	c.G1151A	p.R384Q	GCGGTCCGAATGG	.	66.0	14.0	81.0	1.0	.	156
ZNF488	118738	hgsc.bcm.edu;bcgsc.ca	37	10	48371553	48371554	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ZNF488	NM_153034	exon2	c.1021_1022del	p.341_341del	CACAGCTAGCAGG	.	50.0	15.0	39.0	0.0	.	91
ZNF831	128611	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57768444	57768444	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ZNF831	NM_178457	exon1	c.A2370G	p.R790R	TGCCCGAGGTGTG	.	77.0	33.0	81.0	1.0	.	126
ZNF98	148198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22575687	22575687	+	Missense_Mutation	SNP	C	C	A	rs140301665	alternate_allele	TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	ZNF98	NM_001098626	exon4	c.G350T	p.R117L	TTTTCACGTCCAC	.	244.0	86.0	235.0	0.0	C|0.998;T|0.002	24
ZSWIM6	57688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60831392	60831392	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MF-01A-11D-A33K-10	TCGA-UB-A7MF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	681bd4c8-baed-4557-911b-588c343ee8cd	ebf05fa8-848e-4a45-85ad-42311dac4923	.	.	NM_020928	exon10	c.C2327G	p.S776C	TCACCTCTCTCCT	.	85.0	34.0	90.0	0.0	.	.