Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ARHGEF10L	55160	hgsc.bcm.edu	hg19	1	18014160	18014160	+	Silent	SNP	C	C	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	ARHGEF10L	NM_018125	exon27	c.C3102G	p.T1034T	CGGCACCTCCATC	.	69.0	18.0	146.0	0.0	.	219	.	.	Atlas-SNP
DOCK7	85440	hgsc.bcm.edu	hg19	1	63021551	63021551	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	DOCK7	NM_001271999	exon21	c.A2541G	p.S847S	AATATATGATGCA	.	58.0	18.0	30.0	0.0	.	184	.	.	Atlas-SNP
DOCK7	85440	hgsc.bcm.edu	hg19	1	63091000	63091000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	DOCK7	NM_001272002	exon12	c.G1355A	p.S452N	TCTCCACTTGTTG	.	155.0	52.0	104.0	0.0	.	184	.	.	Atlas-SNP
ZNF644	84146	hgsc.bcm.edu	hg19	1	91406004	91406004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	ZNF644	NM_201269	exon3	c.T907C	p.Y303H	CGGTATAACGAGT	.	59.0	22.0	44.0	0.0	.	120	.	.	Atlas-SNP
FAM20B	9917	hgsc.bcm.edu	hg19	1	179041061	179041061	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	FAM20B	NM_014864	exon8	c.A1012T	p.T338S	GTGTCCACCTGGA	.	342.0	145.0	228.0	0.0	.	38	.	.	Atlas-SNP
SMG7	9887	hgsc.bcm.edu	hg19	1	183519889	183519889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	SMG7	NM_001174061	exon20	c.A3011G	p.H1004R	TAGATCATTCAAC	.	437.0	97.0	137.0	0.0	.	165	.	.	Atlas-SNP
PGBD5	79605	hgsc.bcm.edu	hg19	1	230492978	230492978	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	PGBD5	NM_001258311	exon2	c.C421T	p.Q141X	TTGTCTGCACCAC	.	154.0	94.0	134.0	0.0	.	73	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237824155	237824155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	RYR2	NM_001035	exon56	c.A8344G	p.M2782V	AAAACTATGCTGG	.	439.0	249.0	259.0	0.0	.	1273	.	.	Atlas-SNP
WDR64	128025	hgsc.bcm.edu	hg19	1	241875158	241875158	+	Silent	SNP	T	T	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	WDR64	NM_144625	exon8	c.T999G	p.V333V	CTGTGTTAAGGCA	.	157.0	28.0	63.0	0.0	.	234	.	.	Atlas-SNP
SNX17	9784	hgsc.bcm.edu	hg19	2	27596783	27596783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	SNX17,NS,carcinoma,0,1	SNX17	NM_014748	exon5	c.G377A	p.G126E	GCAACGGGCAGAA	.	116.0	38.0	190.0	0.0	.	40	.	.	Atlas-SNP
MEMO1	51072	hgsc.bcm.edu	hg19	2	32157198	32157198	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	MEMO1	NM_015955	exon3	c.A150G	p.A50A	ATATCCTGCATGG	.	368.0	141.0	244.0	0.0	.	36	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32822997	32822997	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	BIRC6	NM_016252	exon69	c.T13792G	p.F4598V	AGTGTGTTTGTAC	.	40.0	8.0	29.0	0.0	.	838	.	.	Atlas-SNP
EGR4	1961	hgsc.bcm.edu	hg19	2	73519846	73519846	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	EGR4	NM_001965	exon2	c.G509C	p.C170S	AGGAAGCAGGAGT	.	125.0	28.0	268.0	0.0	.	52	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170099496	170099496	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	LRP2	NM_004525	exon24	c.T3637G	p.C1213G	CACTGCAATCAAA	.	100.0	22.0	105.0	0.0	.	751	.	.	Atlas-SNP
CCDC108	255101	hgsc.bcm.edu	hg19	2	219886575	219886575	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	CCDC108	NM_194302	exon18	c.C3057T	p.D1019D	GTTGCCGTCATTC	.	221.0	10.0	239.0	0.0	.	208	.	.	Atlas-SNP
SERPINE2	5270	hgsc.bcm.edu	hg19	2	224866386	224866386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	SERPINE2	NM_001136530	exon2	c.G268A	p.A90T	CCATGGCGAGCTG	.	46.0	7.0	54.0	0.0	.	103	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266124	41266124	+	Missense_Mutation	SNP	A	A	G	rs121913412	bycluster	TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	CTNNB1,gallbladder,other,0,1	CTNNB1	NM_001098209	exon3	c.A121G	p.T41A	GCCACTACCACAG	.	135.0	29.0	69.0	1.0	.	4904	.	.	Atlas-SNP
LARS2	23395	hgsc.bcm.edu	hg19	3	45517966	45517966	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	LARS2	NM_015340	exon10	c.G865C	p.G289R	GTTCATGGGCAAG	.	257.0	76.0	139.0	0.0	.	48	.	.	Atlas-SNP
ALG1L2	644974	hgsc.bcm.edu	hg19	3	129813246	129813246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	.	NM_001136152	exon5	c.G314A	p.G105D	GTGAAGGCAAAGG	.	46.0	10.0	121.0	0.0	.	.	.	.	Atlas-SNP
EIF4A2	1974	hgsc.bcm.edu	hg19	3	186502787	186502787	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	EIF4A2	NM_001967	exon4	c.G245C	p.G82A	GTACTGGCAAGAC	.	86.0	28.0	120.0	0.0	.	55	.	.	Atlas-SNP
TMEM207	131920	hgsc.bcm.edu	hg19	3	190167544	190167544	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	TMEM207	NM_207316	exon1	c.T55G	p.L19V	AACACAAGATCCC	.	75.0	23.0	52.0	0.0	.	19	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195515017	195515017	+	Missense_Mutation	SNP	A	A	T	rs444825	alternate_allele	TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	NM_018406	exon2	c.T3434A	p.V1145E	GTGGATACTGAGG	.	53.0	4.0	57.0	1.0	.	1505	.	.	Atlas-SNP
JAKMIP1	152789	hgsc.bcm.edu	hg19	4	6107374	6107374	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	JAKMIP1	NM_001099433	exon3	c.G450A	p.R150R	CTGCAGCCGCAGG	.	50.0	18.0	76.0	0.0	.	250	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114276704	114276704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	ANK2	NM_001148	exon38	c.G6930T	p.E2310D	GAAAGAGGCCACT	.	93.0	33.0	60.0	0.0	.	576	.	.	Atlas-SNP
APC	324	hgsc.bcm.edu	hg19	5	112173329	112173329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	APC	NM_001127510	exon17	c.G2038T	p.A680S	AGTAATGCATGTG	.	123.0	61.0	76.0	0.0	.	4158	.	.	Atlas-SNP
MEGF10	84466	hgsc.bcm.edu	hg19	5	126791174	126791174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	MEGF10,NS,carcinoma,0,1	MEGF10	NM_032446	exon25	c.C3107T	p.P1036L	AAGACCCACCTGT	.	319.0	142.0	123.0	1.0	.	152	.	.	Atlas-SNP
RAD50	10111	hgsc.bcm.edu	hg19	5	131939116	131939116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	RAD50	NM_005732	exon14	c.A2332G	p.I778V	GGTACAATAATGC	.	337.0	93.0	177.0	0.0	.	246	.	.	Atlas-SNP
BTNL9	153579	hgsc.bcm.edu	hg19	5	180486695	180486695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	BTNL9	NM_152547	exon11	c.G1441A	p.A481T	TCGGGCGCGCTCT	.	94.0	16.0	172.0	0.0	.	58	.	.	Atlas-SNP
FANCE	2178	hgsc.bcm.edu	hg19	6	35434031	35434031	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	FANCE	NM_021922	exon10	c.C1520G	p.T507S	CTGAGACCCAGAG	.	78.0	28.0	97.0	0.0	.	45	.	.	Atlas-SNP
DOPEY1	23033	hgsc.bcm.edu	hg19	6	83863710	83863710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	DOPEY1	NM_015018	exon32	c.G6337T	p.D2113Y	GCTTTTGACCTCT	.	75.0	4.0	68.0	0.0	.	190	.	.	Atlas-SNP
REV3L	5980	hgsc.bcm.edu	hg19	6	111695908	111695908	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	REV3L	NM_002912	exon13	c.A3650C	p.K1217T	GTACCTTTCTCAT	.	46.0	15.0	20.0	0.0	.	386	.	.	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	hg19	7	12376619	12376619	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	VWDE	NM_001135924	exon26	c.A4553C	p.N1518T	CGTGTGTTGCATC	.	120.0	43.0	104.0	0.0	.	123	.	.	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	hg19	7	12428766	12428766	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	VWDE	NM_001135924	exon3	c.C462A	p.G154G	ACAGTAGCCCATA	.	94.0	22.0	78.0	0.0	.	123	.	.	Atlas-SNP
OSBPL3	26031	hgsc.bcm.edu	hg19	7	24911674	24911674	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	OSBPL3	NM_145321	exon3	c.G111A	p.V37V	TTCCACCACTTCC	.	94.0	39.0	88.0	0.0	.	100	.	.	Atlas-SNP
NPC1L1	29881	hgsc.bcm.edu	hg19	7	44575496	44575496	+	Silent	SNP	G	G	A	rs200986707	alternate_allele	TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	NPC1L1	NM_001101648	exon5	c.C1926T	p.V642V	GAATATGACAATG	.	72.0	22.0	101.0	0.0	.	141	.	G|0.999;T|0.001	Atlas-SNP
SLC4A2	6522	hgsc.bcm.edu	hg19	7	150761796	150761796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	SLC4A2	NM_003040	exon4	c.C401T	p.A134V	GCGAGGCTGAGGG	.	119.0	43.0	245.0	0.0	.	98	.	.	Atlas-SNP
TNFRSF10B	8795	hgsc.bcm.edu	hg19	8	22885267	22885267	+	Splice_Site	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	TNFRSF10B	NM_003842	exon7	c.749-1G>A	.	CACCACCTAAAAA	.	35.0	17.0	77.0	0.0	.	34	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52321471	52321471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	PXDNL_ENST00000356297,right_upper_lobe,carcinoma,+1,4	PXDNL	NM_144651	exon17	c.C2713T	p.R905W	ATTCCCGCTCCGA	.	117.0	30.0	217.0	0.0	.	414	.	.	Atlas-SNP
JPH1	56704	hgsc.bcm.edu	hg19	8	75157022	75157022	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	JPH1	NM_020647	exon4	c.G1647A	p.Q549Q	GTGATACTGAGAA	.	56.0	17.0	50.0	0.0	.	77	.	.	Atlas-SNP
AARD	441376	hgsc.bcm.edu	hg19	8	117950650	117950650	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	C8orf85,NS,carcinoma,0,1	.	NM_001025357	exon1	c.G168A	p.L56L	GCTGCTGGAGGAC	.	91.0	33.0	151.0	0.0	.	.	.	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	133911108	133911108	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	TG,NS,carcinoma,0,1	TG	NM_003235	exon14	c.C3283T	p.Q1095X	AGATCCCAAGAAA	.	111.0	38.0	142.0	0.0	.	416	.	.	Atlas-SNP
TOP1MT	116447	hgsc.bcm.edu	hg19	8	144406772	144406772	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	TOP1MT	NM_052963	exon6	c.G699T	p.A233A	GTGCCCCGCCGGC	.	39.0	7.0	94.0	0.0	.	63	.	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	hg19	8	144940679	144940679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	EPPK1	NM_031308	exon1	c.C6743A	p.A2248D	CACATGGCCTGGT	.	54.0	13.0	91.0	0.0	.	199	.	.	Atlas-SNP
IFNA8	3445	hgsc.bcm.edu	hg19	9	21409340	21409340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	IFNA8	NM_002170	exon1	c.C165A	p.D55E	GAAGGACAGACAT	.	69.0	17.0	59.0	0.0	.	19	.	.	Atlas-SNP
ABL1	25	hgsc.bcm.edu	hg19	9	133759735	133759735	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	ABL1	NM_007313	exon11	c.G2115C	p.L705L	CCACCTGTGGAAG	.	58.0	24.0	114.0	0.0	.	1632	.	.	Atlas-SNP
ABL1	25	hgsc.bcm.edu	hg19	9	133759741	133759741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	ABL1	NM_007313	exon11	c.G2121T	p.K707N	GTGGAAGAAGTCC	.	58.0	26.0	111.0	0.0	.	1632	.	.	Atlas-SNP
CAMSAP1	157922	hgsc.bcm.edu	hg19	9	138714941	138714941	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	CAMSAP1,NS,carcinoma,0,1	CAMSAP1	NM_015447	exon11	c.G1566A	p.T522T	GCTCTTCGTGGCC	.	88.0	29.0	192.0	0.0	.	142	.	.	Atlas-SNP
SAPCD2	89958	hgsc.bcm.edu	hg19	9	139959358	139959358	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	.	NM_178448	exon5	c.A1013T	p.Q338L	ATGGTCTGCTGCT	.	54.0	18.0	102.0	0.0	.	.	.	.	Atlas-SNP
PITX3	5309	hgsc.bcm.edu	hg19	10	103991828	103991828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	PITX3	NM_005029	exon2	c.G10T	p.G4C	GCAGGCCGAACTC	.	58.0	20.0	128.0	0.0	.	9	.	.	Atlas-SNP
FAM160A2	84067	hgsc.bcm.edu	hg19	11	6244964	6244964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	FAM160A2	NM_032127	exon3	c.C653T	p.P218L	ACAAAAGGGACAA	.	226.0	69.0	265.0	0.0	.	100	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92533685	92533685	+	Silent	SNP	A	A	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	FAT3	NM_001008781	exon9	c.A7506T	p.V2502V	ATACGTAGCTGAG	.	101.0	31.0	59.0	0.0	.	1822	.	.	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	hg19	11	121393351	121393351	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	SORL1	NM_003105	exon10	c.C1461T	p.L487L	CAACCTCCAGCTC	.	74.0	16.0	50.0	0.0	.	218	.	.	Atlas-SNP
CSDA	8531	hgsc.bcm.edu	hg19	12	10865872	10865872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	CSDA	NM_003651	exon5	c.G511A	p.A171T	CTGCAGCGTAACG	.	28.0	13.0	52.0	0.0	.	35	.	.	Atlas-SNP
MCRS1	10445	hgsc.bcm.edu	hg19	12	49960179	49960179	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	MCRS1	NM_001012300	exon1	c.G44C	p.G15A	CCTGGCCCAGACC	.	63.0	25.0	99.0	0.0	.	40	.	.	Atlas-SNP
AGAP2	116986	hgsc.bcm.edu	hg19	12	58120766	58120766	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	AGAP2	NM_001122772	exon18	c.G3327A	p.L1109L	CAGCAGCAGTTGC	.	64.0	24.0	109.0	0.0	.	167	.	.	Atlas-SNP
SOS2	6655	hgsc.bcm.edu	hg19	14	50649189	50649189	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	SOS2	NM_006939	exon6	c.T850A	p.L284M	CTGCCAAATCTTC	.	77.0	27.0	55.0	0.0	.	195	.	.	Atlas-SNP
TDP1	55775	hgsc.bcm.edu	hg19	14	90446920	90446920	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	TDP1	NM_018319	exon8	c.G828T	p.R276R	CCTCCGGGTTGTC	.	94.0	29.0	55.0	0.0	.	47	.	.	Atlas-SNP
DLK1	8788	hgsc.bcm.edu	hg19	14	101201153	101201153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	DLK1	NM_003836	exon5	c.G1072A	p.D358N	GGGGAGGACCTGG	.	46.0	21.0	91.0	0.0	.	57	.	.	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	hg19	15	48058110	48058110	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	SEMA6D	NM_153617	exon14	c.A1472T	p.Q491L	CATTACAGTTGGA	.	126.0	7.0	53.0	0.0	.	322	.	.	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	hg19	15	88690596	88690596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	NTRK3	NM_001243101	exon6	c.A434G	p.Q145R	AAGAGCTGCCACG	.	172.0	89.0	96.0	0.0	.	587	.	.	Atlas-SNP
NR2F2	7026	hgsc.bcm.edu	hg19	15	96877632	96877632	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	NR2F2,NS,carcinoma,0,1	NR2F2	NM_021005	exon2	c.C770G	p.A257G	TGAATGCGGCGCA	.	98.0	22.0	134.0	1.0	.	35	.	.	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24826592	24826592	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	TNRC6A	NM_014494	exon19	c.G4797A	p.S1599S	CAAATCGCCTAAC	.	70.0	31.0	82.0	0.0	.	171	.	.	Atlas-SNP
RNF40	9810	hgsc.bcm.edu	hg19	16	30774809	30774809	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	RNF40	NM_014771	exon4	c.C371G	p.A124G	CTGAGGCACCTGG	.	96.0	46.0	179.0	0.0	.	83	.	.	Atlas-SNP
PDPR	55066	hgsc.bcm.edu	hg19	16	70161189	70161189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	PDPR	NM_017990	exon4	c.G254T	p.C85F	GGTTCTGTGCTGG	.	176.0	59.0	187.0	0.0	.	66	.	.	Atlas-SNP
TOP2A	7153	hgsc.bcm.edu	hg19	17	38569014	38569014	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	TOP2A	NM_001067	exon7	c.G786A	p.L262L	CACTGGCAGTTTA	.	115.0	6.0	170.0	0.0	.	124	.	.	Atlas-SNP
STAT5A	6776	hgsc.bcm.edu	hg19	17	40453352	40453352	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	STAT5A	NM_003152	exon10	c.C1049G	p.A350G	TTGCAGCCACCGT	.	77.0	24.0	125.0	0.0	.	49	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80041427	80041427	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	FASN	NM_004104	exon31	c.T5307C	p.I1769I	TTTGCCAATTTCC	.	87.0	28.0	148.0	0.0	.	154	.	.	Atlas-SNP
NFIC	4782	hgsc.bcm.edu	hg19	19	3452573	3452573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	NFIC,colon,carcinoma,0,1	NFIC	NM_001245004	exon8	c.C1178T	p.A393V	ACACGGCCATCCG	.	40.0	16.0	129.0	0.0	.	36	.	.	Atlas-SNP
MATK	4145	hgsc.bcm.edu	hg19	19	3778345	3778345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	MATK	NM_002378	exon14	c.C1363A	p.H455N	GGACGTGCACGGG	.	83.0	32.0	165.0	0.0	.	108	.	.	Atlas-SNP
MIS18A	54069	hgsc.bcm.edu	hg19	21	33641405	33641405	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	MIS18A	NM_018944	exon5	c.A645G	p.L215L	CATTTGTAATGCT	.	243.0	124.0	524.0	1.0	.	11	.	.	Atlas-SNP
NLGN4X	57502	hgsc.bcm.edu	hg19	X	5811119	5811119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	NLGN4X	NM_181332	exon6	c.G2190T	p.M730I	CAGAGACATGATC	.	57.0	39.0	68.0	0.0	.	191	.	.	Atlas-SNP
RPS6KA3	6197	hgsc.bcm.edu	hg19	X	20206619	20206619	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	RPS6KA3	NM_004586	exon8	c.A627T	p.L209F	ACCTGTTAACTTG	.	388.0	177.0	271.0	1.0	.	110	.	.	Atlas-SNP
NR0B1	190	hgsc.bcm.edu	hg19	X	30327260	30327260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	NR0B1	NM_000475	exon1	c.C221A	p.P74Q	TGCCGTGGGTGGT	.	76.0	51.0	135.0	0.0	.	61	.	.	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	hg19	X	123196845	123196845	+	Splice_Site	SNP	G	G	C	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	STAG2	NM_001042749	exon18	c.1731+1G>C	.	GCAAAAGTAAGTT	.	162.0	101.0	124.0	0.0	.	309	.	.	Atlas-SNP
SIGLEC15	284266	hgsc.bcm.edu	hg19	18	43418834	43418836	+	In_Frame_Del	DEL	GGG	GGG	-	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	GGG	GGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	SIGLEC15	NM_213602	exon4	c.647_649del	p.216_217del	.	.	91.0	32.0	172.0	0.0	.	10	.	.	Atlas-Indel,Pindel
SERPINA1	5265	hgsc.bcm.edu	hg19	14	94848963	94848964	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.,1	SERPINA1	NM_001127701	exon4	c.612_613del	p.204_205del	.	.	123.0	51.0	105.0	0.0	.	51	.	.	Atlas-Indel,Pindel
SUV420H1	51111	hgsc.bcm.edu	hg19	11	67934456	67934457	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	SUV420H1	NM_016028	exon10	c.1167_1168insA	p.N389fs	.	.	74.0	24.0	55.0	0.0	.	125	.	.	Atlas-Indel,Pindel
GRIK2	2898	hgsc.bcm.edu	hg19	6	102134116	102134116	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9HB-01A-11D-A38X-10	TCGA-2Y-A9HB-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bb715136-b745-4c73-a3d5-e7a63b10fba2	53b59194-cc58-4bbf-a05d-c627c7485018	.	GRIK2	NM_001166247	exon6	c.838delA	p.R280fs	.	.	136.0	46.0	59.0	0.0	.	487	.	.	Atlas-Indel,Pindel