Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CDA	978	hgsc.bcm.edu	hg19	1	20940339	20940339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	CDA	NM_001785	exon3	c.A271G	p.M91V	AGTGACATGCAAG	.	68.0	6.0	80.0	0.0	.	19	.	.	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	hg19	1	70300494	70300494	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	LRRC7	NM_020794	exon4	c.C418T	p.L140L	CTAAACCTGACCC	.	106.0	18.0	96.0	0.0	.	400	.	.	Atlas-SNP
FPGT-TNNI3K	100526835	hgsc.bcm.edu	hg19	1	74957809	74957809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	.	NM_001112808	exon25	c.G2513A	p.S838N	ACAGCAGTGGGTC	.	117.0	29.0	151.0	0.0	.	.	.	.	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	hg19	1	117156546	117156546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	IGSF3	NM_001542	exon4	c.G673A	p.G225R	TCCTCCCCAGCTT	.	124.0	27.0	138.0	0.0	.	294	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144868126	144868126	+	Silent	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	PDE4DIP	NM_014644	exon33	c.C5313T	p.N1771N	CAAGTCGTTGCTC	.	185.0	9.0	99.0	0.0	.	817	.	.	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152080721	152080721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	TCHH	NM_007113	exon3	c.G4972A	p.E1658K	GTTGTTCGCGCTC	.	232.0	24.0	114.0	0.0	.	275	.	.	Atlas-SNP
IVL	3713	hgsc.bcm.edu	hg19	1	152882767	152882767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	IVL	NM_005547	exon2	c.A494C	p.H165P	TGAAGCACCTAGA	.	402.0	177.0	244.0	1.0	.	100	.	.	Atlas-SNP
IVL	3713	hgsc.bcm.edu	hg19	1	152883444	152883444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	IVL	NM_005547	exon2	c.G1171A	p.G391R	GAGGAGGGGCAGC	.	235.0	19.0	131.0	0.0	.	100	.	.	Atlas-SNP
CKS1B	1163	hgsc.bcm.edu	hg19	1	154950543	154950543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	CKS1B	NM_001826	exon2	c.G140A	p.G47D	ATCTTGGCGTTCA	.	188.0	27.0	125.0	0.0	.	5	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158646066	158646066	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	SPTA1	NM_003126	exon8	c.A977C	p.K326T	TCTGCTTTAGCAC	.	149.0	15.0	82.0	0.0	.	720	.	.	Atlas-SNP
NR1I3	9970	hgsc.bcm.edu	hg19	1	161205749	161205749	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	NR1I3	NM_005122	exon3	c.C126G	p.S42R	ACCAATGCTTTTG	.	125.0	7.0	69.0	0.0	.	74	.	.	Atlas-SNP
MAEL	84944	hgsc.bcm.edu	hg19	1	166958660	166958660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	MAEL	NM_032858	exon1	c.G71A	p.R24Q	TACGGCGACGAGG	.	160.0	18.0	84.0	0.0	.	95	.	.	Atlas-SNP
FAM129A	116496	hgsc.bcm.edu	hg19	1	184801016	184801016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	FAM129A	NM_052966	exon6	c.G682A	p.G228S	AGGAACCATAGTG	.	275.0	29.0	190.0	0.0	.	98	.	.	Atlas-SNP
TRIM67	440730	hgsc.bcm.edu	hg19	1	231299711	231299711	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	TRIM67	NM_001004342	exon1	c.C996T	p.H332H	CCGGCACGCCAAG	.	174.0	35.0	108.0	0.0	.	160	.	.	Atlas-SNP
WDR33	55339	hgsc.bcm.edu	hg19	2	128480544	128480544	+	Missense_Mutation	SNP	G	G	T	rs200713285	by1000genomes;alternate_allele	TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	WDR33	NM_018383	exon13	c.C1366A	p.Q456K	GTTCTTGTTCCAT	.	147.0	29.0	144.0	0.0	.	136	.	G|1.000;C|0.000	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	hg19	2	210560690	210560690	+	Silent	SNP	A	A	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	MAP2	NM_002374	exon7	c.A3796C	p.R1266R	GGTGCCAGGGAGG	.	130.0	22.0	111.0	0.0	.	372	.	.	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	hg19	2	211525234	211525234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	CPS1	NM_001122633	exon33	c.C3800T	p.S1267F	GAGCTTCTCGATC	.	121.0	26.0	143.0	0.0	.	485	.	.	Atlas-SNP
AZI2	64343	hgsc.bcm.edu	hg19	3	28382058	28382058	+	Silent	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	AZI2	NM_001134432	exon2	c.C51T	p.A17A	CTTATGGGCTTTT	.	194.0	43.0	208.0	0.0	.	33	.	.	Atlas-SNP
RBMS3	27303	hgsc.bcm.edu	hg19	3	29938929	29938929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	RBMS3_ENST00000383767,NS,carcinoma,0,1	RBMS3	NM_001177712	exon10	c.C890T	p.T297M	CTATCACGCCATT	.	103.0	20.0	110.0	0.0	.	62	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	T	rs121913403	bycluster	TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	CTNNB1,gallbladder,other,0,1	CTNNB1	NM_001098209	exon3	c.C110T	p.S37F	TCCATTCTGGTGC	.	141.0	31.0	165.0	0.0	.	4904	.	.	Atlas-SNP
ULK4	54986	hgsc.bcm.edu	hg19	3	41831172	41831172	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ULK4	NM_017886	exon21	c.A2174T	p.Q725L	AGTCTTTGAAGAT	.	123.0	24.0	113.0	0.0	.	150	.	.	Atlas-SNP
TOPAZ1	375337	hgsc.bcm.edu	hg19	3	44332377	44332377	+	Silent	SNP	A	A	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	.	NM_001145030	exon12	c.A3796C	p.R1266R	AAATCGAGGTGAG	.	173.0	36.0	180.0	0.0	.	.	.	.	Atlas-SNP
LZTFL1	54585	hgsc.bcm.edu	hg19	3	45875746	45875746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	LZTFL1	NM_020347	exon4	c.C368T	p.T123I	GAAGATGTAATCT	.	86.0	6.0	92.0	0.0	.	37	.	.	Atlas-SNP
CCR3	1232	hgsc.bcm.edu	hg19	3	46307580	46307580	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	CCR3	NM_178328	exon3	c.T994A	p.Y332N	CGGAAGTACCTGC	.	64.0	13.0	73.0	0.0	.	52	.	.	Atlas-SNP
GBE1	2632	hgsc.bcm.edu	hg19	3	81630426	81630426	+	Silent	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	GBE1	NM_000158	exon11	c.C1336T	p.L446L	TAAGTAGCTAGAC	.	86.0	9.0	77.0	0.0	.	111	.	.	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	hg19	3	89528604	89528604	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	EPHA3	NM_005233	exon17	c.C2904T	p.S968S	CAGTAGCATTAAA	.	314.0	13.0	292.0	0.0	.	501	.	.	Atlas-SNP
PLOD2	5352	hgsc.bcm.edu	hg19	3	145824364	145824364	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	PLOD2	NM_182943	exon5	c.T570A	p.D190E	CTGATCATCATCA	.	141.0	11.0	147.0	0.0	.	81	.	.	Atlas-SNP
FNDC3B	64778	hgsc.bcm.edu	hg19	3	171944729	171944729	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	FNDC3B	NM_001135095	exon4	c.A256C	p.I86L	GGTTATATCTCAC	.	104.0	27.0	82.0	0.0	.	118	.	.	Atlas-SNP
N4BP2	55728	hgsc.bcm.edu	hg19	4	40122641	40122641	+	Silent	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	N4BP2	NM_018177	exon9	c.G2910A	p.G970G	TCATGGGCAACAC	.	147.0	33.0	142.0	0.0	.	166	.	.	Atlas-SNP
AFM	173	hgsc.bcm.edu	hg19	4	74357714	74357714	+	Silent	SNP	A	A	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	AFM	NM_001133	exon8	c.A969G	p.P323P	TAGACCAAAGGAT	.	400.0	92.0	472.0	0.0	.	101	.	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	hg19	4	87556471	87556471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	PTPN13	NM_006264	exon2	c.T62C	p.I21T	AAGAAATATGGGC	.	95.0	16.0	129.0	0.0	.	203	.	.	Atlas-SNP
PKD2	5311	hgsc.bcm.edu	hg19	4	88996722	88996722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	PKD2	NM_000297	exon15	c.G2783T	p.G928V	GTCATGGTTTAGG	.	101.0	20.0	140.0	0.0	.	82	.	.	Atlas-SNP
ANKRD50	57182	hgsc.bcm.edu	hg19	4	125631232	125631232	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ANKRD50	NM_020337	exon2	c.C435G	p.D145E	TAGCTTGTCCTCA	.	69.0	29.0	44.0	0.0	.	136	.	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26902786	26902786	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	CDH9,NS,carcinoma,0,1	CDH9	NM_016279	exon7	c.A1052C	p.N351T	TGAGTGTTACTTG	.	93.0	17.0	109.0	0.0	.	305	.	.	Atlas-SNP
NUP155	9631	hgsc.bcm.edu	hg19	5	37352900	37352900	+	Silent	SNP	C	C	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	NUP155	NM_153485	exon5	c.G495T	p.L165L	CAAAACCAGGAGG	.	163.0	27.0	161.0	0.0	.	116	.	.	Atlas-SNP
SKIV2L2	23517	hgsc.bcm.edu	hg19	5	54649070	54649070	+	Silent	SNP	C	C	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	SKIV2L2	NM_015360	exon14	c.C1506G	p.R502R	TGCCCGCAAATTT	.	99.0	7.0	92.0	0.0	.	104	.	.	Atlas-SNP
CCNB1	891	hgsc.bcm.edu	hg19	5	68470853	68470853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	CCNB1	NM_031966	exon6	c.G855A	p.M285I	ACAGATGGAAATG	.	177.0	23.0	145.0	0.0	.	36	.	.	Atlas-SNP
EDIL3	10085	hgsc.bcm.edu	hg19	5	83239361	83239361	+	Silent	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	EDIL3	NM_005711	exon11	c.C1320T	p.D440D	GTGAGTGTCATTG	.	117.0	21.0	118.0	0.0	.	94	.	.	Atlas-SNP
LARP1	23367	hgsc.bcm.edu	hg19	5	154172335	154172335	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.,2	LARP1	NM_015315	exon4	c.C487T	p.R163X	TGCCAGCGAGGCG	.	110.0	11.0	105.0	0.0	.	187	.	.	Atlas-SNP
HLA-B	3106	hgsc.bcm.edu	hg19	6	31323270	31323270	+	Missense_Mutation	SNP	G	G	A	rs151341351		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	HLA-B	NM_005514	exon4	c.C719T	p.T240I	TGCCAGGTCAGTG	.	152.0	31.0	129.0	0.0	.	54	.	.	Atlas-SNP
VARS	7407	hgsc.bcm.edu	hg19	6	31747209	31747209	+	Silent	SNP	C	C	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	VARS	NM_006295	exon28	c.G3393T	p.R1131R	GTCAGGCCGGATC	.	77.0	25.0	89.0	0.0	.	76	.	.	Atlas-SNP
ITPR3	3710	hgsc.bcm.edu	hg19	6	33631619	33631619	+	Missense_Mutation	SNP	C	C	G	rs2229630	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ITPR3	NM_002224	exon11	c.C1110G	p.D370E	GCTGGACCCCACC	.	94.0	29.0	65.0	0.0	.	409	.	C|0.995;T|0.005	Atlas-SNP
MOCS1	4337	hgsc.bcm.edu	hg19	6	39881105	39881105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	MOCS1	NM_005943	exon5	c.G713A	p.G238D	GGGAGGCCCTCAG	.	122.0	25.0	114.0	0.0	.	87	.	.	Atlas-SNP
KCNQ5	56479	hgsc.bcm.edu	hg19	6	73787165	73787165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	KCNQ5	NM_001160132	exon4	c.A737G	p.D246G	GCATGGACCGAAG	.	105.0	8.0	84.0	0.0	.	153	.	.	Atlas-SNP
SENP6	26054	hgsc.bcm.edu	hg19	6	76423528	76423528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	SENP6	NM_015571	exon23	c.A3116G	p.E1039G	ATGTAGAGAGCTT	.	222.0	71.0	182.0	0.0	.	189	.	.	Atlas-SNP
RSPO3	84870	hgsc.bcm.edu	hg19	6	127440418	127440418	+	Silent	SNP	A	A	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	RSPO3	NM_032784	exon1	c.A81T	p.G27G	CCGGGGAAGGCGC	.	163.0	16.0	137.0	0.0	.	32	.	.	Atlas-SNP
TXLNB	167838	hgsc.bcm.edu	hg19	6	139609802	139609802	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	TXLNB	NM_153235	exon2	c.A235T	p.K79X	CCTCTTTCCCTGC	.	128.0	47.0	129.0	0.0	.	96	.	.	Atlas-SNP
MICALL2	79778	hgsc.bcm.edu	hg19	7	1484651	1484651	+	Missense_Mutation	SNP	G	G	A	rs375853882		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	MICALL2	NM_182924	exon6	c.C1055T	p.A352V	CACGGGGCAGCTG	.	70.0	6.0	66.0	0.0	.	63	.	.	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	hg19	7	83014671	83014671	+	Missense_Mutation	SNP	C	C	A	rs145707650		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	SEMA3E	NM_012431	exon16	c.G1814T	p.R605L	AAAGATCGTGGGG	.	203.0	40.0	162.0	0.0	.	125	.	C|1.000;A|0.000	Atlas-SNP
ACHE	43	hgsc.bcm.edu	hg19	7	100490028	100490028	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ACHE	NM_000665	exon3	c.C1480T	p.R494X	AGTTTCGAGAGGG	.	162.0	22.0	131.0	0.0	.	80	.	.	Atlas-SNP
MLL5	55904	hgsc.bcm.edu	hg19	7	104730539	104730539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	MLL5	NM_018682	exon13	c.T1442C	p.I481T	AAAATATCAATAG	.	539.0	189.0	427.0	0.0	.	173	.	.	Atlas-SNP
IFRD1	3475	hgsc.bcm.edu	hg19	7	112102091	112102091	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	IFRD1	NM_001007245	exon8	c.C654T	p.I218I	AAATATCTTCACT	.	153.0	35.0	106.0	0.0	.	46	.	.	Atlas-SNP
KIAA1549	57670	hgsc.bcm.edu	hg19	7	138601674	138601674	+	Silent	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	KIAA1549	NM_020910	exon2	c.C2698T	p.L900L	CCATCAGGGTGGA	.	102.0	14.0	82.0	0.0	.	314	.	.	Atlas-SNP
ARHGEF10	9639	hgsc.bcm.edu	hg19	8	1905384	1905384	+	Silent	SNP	G	G	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ARHGEF10	NM_014629	exon29	c.G3990T	p.L1330L	AGAGCTGGCGCCG	.	65.0	12.0	78.0	0.0	.	255	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52321956	52321956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	PXDNL	NM_144651	exon17	c.G2228A	p.G743D	GCCGCGCCCCACG	.	60.0	26.0	51.0	0.0	.	414	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77618110	77618110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ZFHX4	NM_024721	exon2	c.G1787A	p.S596N	CCCCGAGTACTCC	.	164.0	48.0	122.0	0.0	.	878	.	.	Atlas-SNP
AGO2	27161	hgsc.bcm.edu	hg19	8	141595331	141595331	+	Silent	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	.	NM_012154	exon2	c.C102T	p.S34S	TCTCCCGGAGGTC	.	211.0	53.0	141.0	0.0	.	.	.	.	Atlas-SNP
TSNARE1	203062	hgsc.bcm.edu	hg19	8	143395792	143395792	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	TSNARE1	NM_145003	exon9	c.G1084C	p.E362Q	ACTTTTCTGCAAT	.	101.0	46.0	84.0	0.0	.	59	.	.	Atlas-SNP
PTPRD	5789	hgsc.bcm.edu	hg19	9	8733790	8733790	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	PTPRD	NM_001040712	exon1	c.G54A	p.T18T	AGCATCCGTGCGG	.	92.0	24.0	82.0	0.0	.	1348	.	.	Atlas-SNP
RALGPS1	9649	hgsc.bcm.edu	hg19	9	129973041	129973041	+	Silent	SNP	C	C	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	RALGPS1	NM_001190729	exon13	c.C1105A	p.R369R	AGAACCCGGAGCT	.	106.0	27.0	104.0	0.0	.	86	.	.	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	hg19	9	134357810	134357810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	PRRC2B	NM_013318	exon20	c.C5036A	p.S1679Y	CCGAGTCTCGGGA	.	184.0	41.0	187.0	0.0	.	266	.	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	62149211	62149211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ANK3	NM_020987	exon1	c.G86A	p.R29H	CGTTTGCGGTGTT	.	100.0	6.0	81.0	0.0	.	703	.	.	Atlas-SNP
SEC24C	9632	hgsc.bcm.edu	hg19	10	75528787	75528787	+	Silent	SNP	T	T	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	SEC24C,colon,carcinoma,0,1	SEC24C	NM_198597	exon17	c.T2301C	p.F767F	TTTCTTTGGAGCT	.	136.0	31.0	106.0	0.0	.	86	.	.	Atlas-SNP
LIPJ	142910	hgsc.bcm.edu	hg19	10	90356037	90356037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	LIPJ	NM_001010939	exon7	c.G440A	p.G147D	TTTTAGGTTTCAT	.	508.0	52.0	359.0	0.0	.	32	.	.	Atlas-SNP
MYOF	26509	hgsc.bcm.edu	hg19	10	95134586	95134586	+	Silent	SNP	T	T	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	MYOF	NM_013451	exon23	c.A2235T	p.T745T	CACATCTGTGGCT	.	148.0	47.0	128.0	0.0	.	177	.	.	Atlas-SNP
CWF19L1	55280	hgsc.bcm.edu	hg19	10	102013179	102013179	+	Nonsense_Mutation	SNP	G	G	A	rs150239404	bycluster	TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	CWF19L1	NM_018294	exon6	c.C622T	p.R208X	CTCACCGATATGG	.	104.0	18.0	104.0	0.0	.	39	.	G|1.000;A|0.000	Atlas-SNP
INA	9118	hgsc.bcm.edu	hg19	10	105037736	105037736	+	Silent	SNP	G	G	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	INA	NM_032727	exon1	c.G768T	p.V256V	GACTGTGGCTAAA	.	170.0	27.0	165.0	0.0	.	34	.	.	Atlas-SNP
LHPP	64077	hgsc.bcm.edu	hg19	10	126205791	126205791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	LHPP,NS,carcinoma,0,1	LHPP	NM_022126	exon6	c.G667T	p.A223S	GGCGGTGCCCAGC	.	77.0	17.0	68.0	0.0	.	18	.	.	Atlas-SNP
OR51G2	81282	hgsc.bcm.edu	hg19	11	4936102	4936102	+	Silent	SNP	A	A	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	OR51G2	NM_001005238	exon1	c.T792C	p.S264S	GATGACAGAGAGG	.	164.0	37.0	163.0	0.0	.	70	.	.	Atlas-SNP
ABTB2	25841	hgsc.bcm.edu	hg19	11	34192494	34192494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ABTB2	NM_145804	exon5	c.G1522A	p.E508K	AGGCCTCGATGGC	.	81.0	11.0	85.0	0.0	.	101	.	.	Atlas-SNP
OR5M10	390167	hgsc.bcm.edu	hg19	11	56344374	56344374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	OR5M10	NM_001004741	exon1	c.C824T	p.A275V	AAGACTGCAATTA	.	276.0	55.0	308.0	0.0	.	56	.	.	Atlas-SNP
C11orf24	53838	hgsc.bcm.edu	hg19	11	68029219	68029219	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	C11orf24	NM_022338	exon4	c.C1244G	p.T415R	AAGACTGTGATGA	.	142.0	19.0	127.0	0.0	.	35	.	.	Atlas-SNP
PAK1	5058	hgsc.bcm.edu	hg19	11	77060308	77060308	+	Silent	SNP	T	T	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	PAK1	NM_001128620	exon9	c.A861T	p.A287A	ATCCATTGCTGTG	.	86.0	18.0	122.0	0.0	.	89	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78387340	78387340	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	.	NM_001098816	exon30	c.C5353G	p.H1785D	GCAAGTGGGGCTC	.	62.0	10.0	60.0	0.0	.	.	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92533209	92533209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	FAT3	NM_001008781	exon9	c.G7030A	p.G2344S	TCAAGTGGCTTAA	.	113.0	5.0	103.0	0.0	.	1822	.	.	Atlas-SNP
HTR3B	9177	hgsc.bcm.edu	hg19	11	113803709	113803709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	HTR3B	NM_006028	exon6	c.A590G	p.D197G	AGCATGACAAAAA	.	123.0	42.0	102.0	0.0	.	50	.	.	Atlas-SNP
ROBO4	54538	hgsc.bcm.edu	hg19	11	124756912	124756912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ROBO4	NM_019055	exon15	c.C2396T	p.A799V	CACAGGGCTACCT	.	132.0	33.0	157.0	0.0	.	130	.	.	Atlas-SNP
GPR162	27239	hgsc.bcm.edu	hg19	12	6933599	6933599	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	GPR162	NM_019858	exon2	c.T535G	p.F179V	CTCGGCTTTGGCG	.	93.0	17.0	82.0	0.0	.	55	.	.	Atlas-SNP
GPR162	27239	hgsc.bcm.edu	hg19	12	6933713	6933713	+	Missense_Mutation	SNP	C	C	T	rs375616091		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	GPR162,trunk,malignant_melanoma,-1,1	GPR162	NM_019858	exon2	c.C649T	p.R217W	CAGGCCCGGAGAG	.	68.0	21.0	65.0	1.0	.	55	.	.	Atlas-SNP
ITGB7	3695	hgsc.bcm.edu	hg19	12	53585410	53585410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ITGB7	NM_000889	exon16	c.C2327T	p.P776L	TAGAGAGGATTAC	.	111.0	20.0	114.0	0.0	.	60	.	.	Atlas-SNP
MON2	23041	hgsc.bcm.edu	hg19	12	62902146	62902146	+	Silent	SNP	A	A	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	MON2	NM_015026	exon8	c.A870G	p.R290R	GTTCAGACAAGGT	.	225.0	9.0	167.0	0.0	.	160	.	.	Atlas-SNP
MYF6	4618	hgsc.bcm.edu	hg19	12	81101722	81101722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	MYF6	NM_002469	exon1	c.G224A	p.G75D	GCCCCGGCCAGTG	.	104.0	25.0	64.0	0.0	.	74	.	.	Atlas-SNP
BTBD11	121551	hgsc.bcm.edu	hg19	12	108013779	108013779	+	Silent	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	BTBD11	NM_001018072	exon11	c.G2469A	p.L823L	GACTCTGCACACG	.	68.0	6.0	50.0	0.0	.	122	.	.	Atlas-SNP
ARPC3	10094	hgsc.bcm.edu	hg19	12	110874389	110874389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ARPC3	NM_005719	exon5	c.G352A	p.A118T	GTTTGGCATAAAT	.	65.0	8.0	46.0	0.0	.	7	.	.	Atlas-SNP
CCDC60	160777	hgsc.bcm.edu	hg19	12	119957988	119957988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	CCDC60	NM_178499	exon9	c.T1031C	p.L344P	CCACTCTCAAATC	.	72.0	13.0	68.0	0.0	.	84	.	.	Atlas-SNP
PABPC3	5042	hgsc.bcm.edu	hg19	13	25671865	25671865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	PABPC3	NM_030979	exon1	c.C1529T	p.A510V	ATGCTGCGGGAGT	.	71.0	13.0	70.0	0.0	.	129	.	.	Atlas-SNP
OLFM4	10562	hgsc.bcm.edu	hg19	13	53603061	53603061	+	Silent	SNP	C	C	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	OLFM4	NM_006418	exon1	c.C90A	p.P30P	AATTCCCAGCCCC	.	65.0	12.0	91.0	0.0	.	94	.	.	Atlas-SNP
SCEL	8796	hgsc.bcm.edu	hg19	13	78211328	78211328	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	SCEL	NM_144777	exon30	c.A1837T	p.R613W	TCTGATAGGTGAG	.	58.0	9.0	55.0	0.0	.	85	.	.	Atlas-SNP
RNASE12	493901	hgsc.bcm.edu	hg19	14	21058715	21058715	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	RNASE12	NM_001024822	exon1	c.G168A	p.R56R	AGGTTCCCTGATA	.	119.0	22.0	165.0	0.0	.	19	.	.	Atlas-SNP
C14orf93	60686	hgsc.bcm.edu	hg19	14	23467696	23467696	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	C14orf93	NM_021944	exon2	c.G537A	p.R179R	CATGTCCCTCTGA	.	152.0	26.0	155.0	0.0	.	33	.	.	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	hg19	14	42356164	42356164	+	Silent	SNP	T	T	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	LRFN5	NM_152447	exon3	c.T336G	p.T112T	ATTGACTAAAATT	.	144.0	24.0	150.0	0.0	.	269	.	.	Atlas-SNP
ESRRB	2103	hgsc.bcm.edu	hg19	14	76957890	76957890	+	Silent	SNP	C	C	T	rs139812473		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ESRRB	NM_004452	exon8	c.C888T	p.D296D	CTATGACGACAAG	.	110.0	19.0	136.0	0.0	.	114	.	C|1.000;T|0.000	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33954906	33954906	+	Silent	SNP	G	G	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	RYR3	NM_001243996	exon35	c.G5175T	p.V1725V	GCCTGTGCTGAAA	.	115.0	19.0	109.0	0.0	.	760	.	.	Atlas-SNP
MEIS2	4212	hgsc.bcm.edu	hg19	15	37242602	37242602	+	Splice_Site	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	MEIS2	NM_170677	exon10	c.901-1G>A	.	CGGATGCTAATGG	.	140.0	14.0	99.0	0.0	.	99	.	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	hg19	15	41988636	41988636	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	MGA	NM_001080541	exon3	c.C1428T	p.V476V	TGCTGTCACCAGA	.	148.0	27.0	103.0	0.0	.	264	.	.	Atlas-SNP
ARID3B	10620	hgsc.bcm.edu	hg19	15	74836644	74836644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ARID3B	NM_006465	exon2	c.C367T	p.H123Y	TATTTTCATGTGC	.	288.0	24.0	216.0	0.0	.	35	.	.	Atlas-SNP
FAM108C1	58489	hgsc.bcm.edu	hg19	15	81046707	81046707	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	FAM108C1	NM_021214	exon3	c.C986G	p.S329C	CTAATTCCTGAAG	.	83.0	30.0	76.0	0.0	.	12	.	.	Atlas-SNP
C16orf11	146325	hgsc.bcm.edu	hg19	16	613614	613614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	C16orf11	NM_145270	exon2	c.C320A	p.P107H	CACGGCCCACAGG	.	47.0	5.0	48.0	0.0	.	27	.	.	Atlas-SNP
PRSS27	83886	hgsc.bcm.edu	hg19	16	2764244	2764244	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	PRSS27	NM_031948	exon4	c.G330A	p.V110V	GCTCTCCACCTGC	.	41.0	10.0	41.0	0.0	.	20	.	.	Atlas-SNP
MEFV	4210	hgsc.bcm.edu	hg19	16	3296531	3296531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	MEFV	NM_000243	exon6	c.T1604C	p.L535S	CTGTGCAAGATGT	.	60.0	8.0	44.0	0.0	.	170	.	.	Atlas-SNP
TMC7	79905	hgsc.bcm.edu	hg19	16	19056299	19056299	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	TMC7	NM_024847	exon10	c.C1431T	p.C477C	CCTTTGCGGCTAC	.	113.0	32.0	86.0	0.0	.	75	.	.	Atlas-SNP
RBBP6	5930	hgsc.bcm.edu	hg19	16	24583041	24583041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	RBBP6,bladder,carcinoma,0,1	RBBP6	NM_006910	exon18	c.A4654G	p.K1552E	GATACTAAACGGC	.	495.0	85.0	428.0	0.0	.	158	.	.	Atlas-SNP
MVP	9961	hgsc.bcm.edu	hg19	16	29858633	29858633	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	MVP	NM_017458	exon14	c.A2381C	p.K794T	TGAAGAAGTTCAA	.	66.0	8.0	56.0	0.0	.	80	.	.	Atlas-SNP
NRN1L	123904	hgsc.bcm.edu	hg19	16	67920015	67920015	+	Silent	SNP	C	C	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	NRN1L	NM_198443	exon3	c.C351A	p.A117A	CGGTGCCCCGGTG	.	42.0	7.0	28.0	0.0	.	13	.	.	Atlas-SNP
DNAAF1	123872	hgsc.bcm.edu	hg19	16	84188219	84188219	+	Silent	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	DNAAF1	NM_178452	exon4	c.G390A	p.G130G	CACAGGGCTGCGC	.	122.0	43.0	102.0	0.0	.	81	.	.	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89347979	89347979	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ANKRD11	NM_001256183	exon9	c.G4971A	p.S1657S	AGGAGTCGACTCT	.	123.0	13.0	76.0	0.0	.	195	.	.	Atlas-SNP
CHRNB1	1140	hgsc.bcm.edu	hg19	17	7359261	7359261	+	Splice_Site	SNP	G	G	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	CHRNB1	NM_000747	exon10	c.1365+1G>C	.	GATGCGGTATGTC	.	125.0	10.0	82.0	0.0	.	46	.	.	Atlas-SNP
VPS25	84313	hgsc.bcm.edu	hg19	17	40925774	40925774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	VPS25	NM_032353	exon2	c.G77T	p.R26L	ACACTCGGCAGAA	.	81.0	13.0	66.0	0.0	.	11	.	.	Atlas-SNP
APOH	350	hgsc.bcm.edu	hg19	17	64219853	64219853	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	APOH	NM_000042	exon4	c.G378A	p.E126E	TCCTTCCTCAGTG	.	114.0	22.0	115.0	0.0	.	45	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76567433	76567433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	DNAH17	NM_173628	exon5	c.G760A	p.V254I	TCTCAACAATCTT	.	181.0	20.0	159.0	0.0	.	347	.	.	Atlas-SNP
L3MBTL4	91133	hgsc.bcm.edu	hg19	18	6263997	6263997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	L3MBTL4	NM_173464	exon5	c.G168C	p.W56C	CAAGTACCACTCC	.	108.0	10.0	111.0	0.0	.	87	.	.	Atlas-SNP
GREB1L	80000	hgsc.bcm.edu	hg19	18	19024334	19024334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	GREB1L	NM_001142966	exon11	c.A1357G	p.M453V	GAAAACATGATTC	.	96.0	21.0	126.0	0.0	.	69	.	.	Atlas-SNP
CACTIN	58509	hgsc.bcm.edu	hg19	19	3626733	3626733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	.	NM_021231	exon1	c.C28T	p.R10W	CGGACCGCGAGCG	.	53.0	19.0	66.0	0.0	.	.	.	.	Atlas-SNP
FEM1A	55527	hgsc.bcm.edu	hg19	19	4793065	4793065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	FEM1A	NM_018708	exon1	c.A1199G	p.Y400C	CCGTGTACGCCGA	.	53.0	6.0	49.0	0.0	.	41	.	.	Atlas-SNP
SAFB2	9667	hgsc.bcm.edu	hg19	19	5592867	5592867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	SAFB2,NS,carcinoma,0,1	SAFB2	NM_014649	exon16	c.C2239T	p.R747C	CCACACGCTTTCC	.	113.0	16.0	101.0	0.0	.	90	.	.	Atlas-SNP
RAVER1	125950	hgsc.bcm.edu	hg19	19	10431330	10431330	+	Splice_Site	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	RAVER1	NM_133452	exon10	c.1821+1G>A	.	CACTCACCGAGGG	.	116.0	12.0	114.0	0.0	.	67	.	.	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	hg19	19	13476260	13476260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	CACNA1A	NM_001127221	exon5	c.A655G	p.I219V	TCATGATCGACTT	.	255.0	51.0	187.0	0.0	.	715	.	.	Atlas-SNP
SIN3B	23309	hgsc.bcm.edu	hg19	19	16952599	16952599	+	Silent	SNP	G	G	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	SIN3B	NM_015260	exon4	c.G402C	p.G134G	CCACGGGGACGGT	.	172.0	23.0	147.0	0.0	.	90	.	.	Atlas-SNP
MPV17L2	84769	hgsc.bcm.edu	hg19	19	18306856	18306856	+	Silent	SNP	A	A	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	MPV17L2	NM_032683	exon5	c.A612C	p.R204R	CACCCGAGCAGAC	.	70.0	30.0	51.0	0.0	.	12	.	.	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	hg19	19	40368475	40368475	+	Silent	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	FCGBP	NM_003890	exon28	c.C12873T	p.F4291F	GGTGGTGAAGGGG	.	146.0	16.0	104.0	0.0	.	416	.	.	Atlas-SNP
CYP2B6	1555	hgsc.bcm.edu	hg19	19	41512811	41512811	+	Silent	SNP	G	G	T	rs150862336	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	CYP2B6	NM_000767	exon4	c.G486T	p.G162G	CCTAGGGGCCCTC	.	74.0	10.0	54.0	0.0	.	79	.	G|0.999;A|0.001	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	hg19	19	53854546	53854546	+	Silent	SNP	G	G	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ZNF845	NM_138374	exon4	c.G618A	p.Q206Q	AAAGCAGGAAGTA	.	160.0	28.0	159.0	0.0	.	101	.	.	Atlas-SNP
RBL1	5933	hgsc.bcm.edu	hg19	20	35695127	35695127	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	RBL1	NM_183404	exon6	c.G846C	p.K282N	CAGTACCTTCCTG	.	121.0	45.0	91.0	0.0	.	114	.	.	Atlas-SNP
PCIF1	63935	hgsc.bcm.edu	hg19	20	44574977	44574977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	PCIF1,colon,carcinoma,0,1	PCIF1	NM_022104	exon14	c.T1567C	p.Y523H	CGCCAGTACTGTT	.	49.0	17.0	55.0	0.0	.	51	.	.	Atlas-SNP
ARFGEF2	10564	hgsc.bcm.edu	hg19	20	47601303	47601303	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ARFGEF2	NM_006420	exon15	c.C1996T	p.Q666X	TTTCTCCAGGAGC	.	199.0	31.0	156.0	0.0	.	160	.	.	Atlas-SNP
SALL4	57167	hgsc.bcm.edu	hg19	20	50408507	50408507	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	SALL4	NM_020436	exon2	c.C515G	p.A172G	CCTTTGGCTAAAT	.	75.0	13.0	72.0	0.0	.	168	.	.	Atlas-SNP
GNAS	2778	hgsc.bcm.edu	hg19	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	bycluster	TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	GNAS_ENST00000371100,NS,adenocarcinoma,0,338	GNAS	NM_080425	exon8	c.C2530T	p.R844C	CGCTGCCGTGTCC	.	119.0	34.0	135.0	0.0	.	867	.	C|1.000	Atlas-SNP
LIPI	149998	hgsc.bcm.edu	hg19	21	15535777	15535777	+	Silent	SNP	A	A	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	LIPI	NM_198996	exon7	c.T1032A	p.T344T	AAACACAGTGGTC	.	195.0	20.0	168.0	0.0	.	95	.	.	Atlas-SNP
ETS2	2114	hgsc.bcm.edu	hg19	21	40186286	40186286	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ETS2	NM_001256295	exon5	c.A694C	p.K232Q	TTCAAAAAGGAAC	.	109.0	19.0	97.0	0.0	.	87	.	.	Atlas-SNP
EP300	2033	hgsc.bcm.edu	hg19	22	41523630	41523630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	EP300	NM_001429	exon4	c.A1046G	p.H349R	ATGCTCACAAGTG	.	146.0	22.0	146.0	0.0	.	367	.	.	Atlas-SNP
CYP2D6	1565	hgsc.bcm.edu	hg19	22	42522650	42522650	+	Missense_Mutation	SNP	G	G	A	rs185772085	by1000genomes;alternate_allele	TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	CYP2D6	NM_000106	exon9	c.C1420T	p.R474W	TGGGCCGGGGCTG	.	167.0	22.0	195.0	0.0	.	104	.	G|1.000;T|0.000	Atlas-SNP
ZIC3	7547	hgsc.bcm.edu	hg19	X	136649430	136649430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ZIC3	NM_003413	exon1	c.G580T	p.G194C	CTGTTCGGCCGTG	.	120.0	34.0	109.0	0.0	.	93	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13915	13915	+	Nonsense_Mutation	SNP	G	G	A	rs28359183	bycluster;byfrequency;alternate_allele	TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	.	ENST00000361567	exon1	c.G1579A	p.G527X	ATACTCGGATTCT	.	84.0	17.0	22.0	0.0	.	.	.	A|0.036;C|0.964	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15489	15489	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	.	ENST00000361789	exon1	c.A743C	p.D248A	CACCAGACCTCCT	.	84.0	77.0	23.0	0.0	.	.	.	.	Atlas-SNP
ATP8B4	79895	hgsc.bcm.edu	hg19	15	50223353	50223354	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ATP8B4	NM_024837	exon16	c.1605_1606insT	p.L535fs	.	.	212.0	36.0	160.0	0.0	.	173	.	.	Atlas-Indel,Pindel
LCE1F	353137	hgsc.bcm.edu	hg19	1	152749024	152749025	+	In_Frame_Ins	INS	-	-	TGCAGCTCTGGGGGCTGC	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	LCE1F,colon,carcinoma,0,1	LCE1F	NM_178354	exon1	c.177_178insTGCAGCTCTGGGGGCTGC	p.C59delinsCCSSGGC	.	.	366.0	81.0	202.0	0.0	.	42	.	.	Atlas-INDEL
NKIRAS2	28511	hgsc.bcm.edu	hg19	17	40174526	40174543	+	In_Frame_Del	DEL	GGCCGAACTGCCCCGACA	GGCCGAACTGCCCCGACA	-	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	GGCCGAACTGCCCCGACA	GGCCGAACTGCCCCGACA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	NKIRAS2	NM_017595	exon3	c.203_220del	p.68_74del	.	.	73.0	12.0	60.0	0.0	.	15	.	.	Atlas-INDEL
SALL4	57167	hgsc.bcm.edu	hg19	20	50408510	50408510	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	SALL4	NM_020436	exon2	c.513delA	p.L171fs	.	.	76.0	13.0	73.0	0.0	.	168	.	.	Atlas-INDEL
TRPA1	8989	hgsc.bcm.edu	hg19	8	72936129	72936130	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.,1	TRPA1	NM_007332	exon26	c.3069_3070insT	p.L1023fs	.	.	374.0	86.0	238.0	0.0	.	256	.	.	Atlas-Indel,Pindel
NPLOC4	55666	hgsc.bcm.edu	hg19	17	79556001	79556011	+	Frame_Shift_Del	DEL	CTGCTAGACTC	CTGCTAGACTC	-	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	CTGCTAGACTC	CTGCTAGACTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	NPLOC4	NM_017921	exon12	c.1241_1251del	p.414_417del	.	.	131.0	12.0	128.0	0.0	.	27	.	.	Atlas-Indel,Pindel
EPHB1	2047	hgsc.bcm.edu	hg19	3	134898792	134898793	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	EPHB1	NM_004441	exon10	c.1850_1851insT	p.S617fs	.	.	131.0	47.0	131.0	0.0	.	519	.	.	Atlas-Indel,Pindel
LRRC24	441381	hgsc.bcm.edu	hg19	8	145748697	145748698	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	LRRC24	NM_001024678	exon5	c.704_705del	p.235_235del	.	.	111.0	25.0	85.0	0.0	.	11	.	.	Atlas-Indel,Pindel
PELO	53918	hgsc.bcm.edu	hg19	5	52097577	52097577	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	PELO	NM_015946	exon3	c.1060delG	p.E354fs	.	.	127.0	16.0	106.0	0.0	.	25	.	.	Atlas-Indel,Pindel
CPS1	1373	hgsc.bcm.edu	hg19	2	211473265	211473444	+	Frame_Shift_Del	DEL	TATGAAAAGTGTAGGAGAGGTGAGTCCTTGGTTTATTACGCTTTTCTTCTTGTTCTCAGTTATTTTGTTAAATTTGTGACACCATTGACAGTGTTAAAGTTGCCTGGATACCATCAACACATGGACAGTGTTAAAGGTGCAATTGACAGTGTTAAAGTTGCCTGAATATTAGCATACTAA	TATGAAAAGTGTAGGAGAGGTGAGTCCTTGGTTTATTACGCTTTTCTTCTTGTTCTCAGTTATTTTGTTAAATTTGTGACACCATTGACAGTGTTAAAGTTGCCTGGATACCATCAACACATGGACAGTGTTAAAGGTGCAATTGACAGTGTTAAAGTTGCCTGAATATTAGCATACTAA	-	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	TATGAAAAGTGTAGGAGAGGTGAGTCCTTGGTTTATTACGCTTTTCTTCTTGTTCTCAGTTATTTTGTTAAATTTGTGACACCATTGACAGTGTTAAAGTTGCCTGGATACCATCAACACATGGACAGTGTTAAAGGTGCAATTGACAGTGTTAAAGTTGCCTGAATATTAGCATACTAA	TATGAAAAGTGTAGGAGAGGTGAGTCCTTGGTTTATTACGCTTTTCTTCTTGTTCTCAGTTATTTTGTTAAATTTGTGACACCATTGACAGTGTTAAAGTTGCCTGGATACCATCAACACATGGACAGTGTTAAAGGTGCAATTGACAGTGTTAAAGTTGCCTGAATATTAGCATACTAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	CPS1	NM_001122633	exon20	c.2390_2409del	p.797_803del	.	.	60.0	18.0	81.0	0.0	.	485	.	.	Pindel
KLKB1	3818	hgsc.bcm.edu	hg19	4	187158050	187158051	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	KLKB1	NM_000892	exon5	c.444_445insT	p.Q148fs	.	.	133.0	17.0	125.0	0.0	.	155	.	.	Pindel
ZNF626	199777	hgsc.bcm.edu	hg19	19	20807134	20807300	+	Frame_Shift_Del	DEL	GCTTTGCCACATTCTTCACATTTGTAGAATTTCTCTCCAGTATGATTCTCTCATGTGTAGTAAGGATTGAGGACTGGTTGAAGGCTTTGCCACATTCTTCACATTTGTAGGGTCTCTCTCCAGTATGAATTTTCTTATGTGTAGTAAGGTTAGAGGAGCACTTAAAA	GCTTTGCCACATTCTTCACATTTGTAGAATTTCTCTCCAGTATGATTCTCTCATGTGTAGTAAGGATTGAGGACTGGTTGAAGGCTTTGCCACATTCTTCACATTTGTAGGGTCTCTCTCCAGTATGAATTTTCTTATGTGTAGTAAGGTTAGAGGAGCACTTAAAA	-	novel		TCGA-5C-A9VG-01A-11D-A36X-10	TCGA-5C-A9VG-10A-01D-A370-10	GCTTTGCCACATTCTTCACATTTGTAGAATTTCTCTCCAGTATGATTCTCTCATGTGTAGTAAGGATTGAGGACTGGTTGAAGGCTTTGCCACATTCTTCACATTTGTAGGGTCTCTCTCCAGTATGAATTTTCTTATGTGTAGTAAGGTTAGAGGAGCACTTAAAA	GCTTTGCCACATTCTTCACATTTGTAGAATTTCTCTCCAGTATGATTCTCTCATGTGTAGTAAGGATTGAGGACTGGTTGAAGGCTTTGCCACATTCTTCACATTTGTAGGGTCTCTCTCCAGTATGAATTTTCTTATGTGTAGTAAGGTTAGAGGAGCACTTAAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13e306ac-a7ee-42ba-ad29-886a69f4a281	c2b2e35f-2bd4-46f6-8aaa-7c6c21fdf3d2	.	ZNF626	NM_001076675	exon4	c.1384_1550del	p.462_517del	.	.	32.0	19.0	35.0	0.0	.	121	.	.	Pindel