Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
WNT7A	7476	hgsc.bcm.edu	hg19	3	13921289	13921289	+	Missense_Mutation	SNP	G	G	C	rs145718587	byfrequency;alternate_allele	TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	.	WNT7A	NM_004625	exon1	c.C25G	p.L9V	GGCCCAGGCAGCG	.	223.0	37.0	232.0	0.0	.	70	.	G|1.000;A|0.000	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26885762	26885762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	CDH9,right_upper_lobe,carcinoma,0,1	CDH9	NM_016279	exon11	c.G1843A	p.A615T	CGAGAGCTCCCGT	.	160.0	29.0	162.0	0.0	.	305	.	.	Atlas-SNP
PON2	5445	hgsc.bcm.edu	hg19	7	95040997	95040997	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	.	PON2	NM_000305	exon5	c.T462G	p.H154Q	TTTCAGATGCAAC	.	149.0	27.0	168.0	0.0	.	32	.	.	Atlas-SNP
NLRP6	171389	hgsc.bcm.edu	hg19	11	281192	281192	+	Silent	SNP	G	G	T	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	.	NLRP6	NM_138329	exon4	c.G1458T	p.P486P	GCTGCCGGGCGTG	.	103.0	18.0	133.0	0.0	.	4	.	.	Atlas-SNP
SAA2-SAA4	100528017	hgsc.bcm.edu	hg19	11	18254009	18254009	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	.	.	NM_001199744	exon5	c.T397A	p.Y133N	GAGCATAGAGATA	.	103.0	18.0	131.0	0.0	.	.	.	.	Atlas-SNP
OTUB1	55611	hgsc.bcm.edu	hg19	11	63753947	63753947	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	.	OTUB1	NM_017670	exon1	c.C19T	p.Q7X	GAACCTCAGCAGC	.	124.0	15.0	159.0	0.0	.	19	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43748039	43748039	+	Silent	SNP	A	A	G	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	.	ADAMTS20	NM_025003	exon39	c.T5706C	p.T1902T	ACCAGTAGTCATG	.	84.0	17.0	84.0	0.0	.	635	.	.	Atlas-SNP
APOF	319	hgsc.bcm.edu	hg19	12	56755172	56755172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	.	APOF	NM_001638	exon2	c.C818T	p.T273I	TTGGTGGTCTCCG	.	84.0	7.0	105.0	0.0	.	13	.	.	Atlas-SNP
HHIPL1	84439	hgsc.bcm.edu	hg19	14	100135258	100135258	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	.	HHIPL1	NM_032425	exon8	c.G1820A	p.W607X	AGTGGTGGAAATG	.	45.0	12.0	56.0	0.0	.	86	.	.	Atlas-SNP
NPAP1	23742	hgsc.bcm.edu	hg19	15	24921813	24921813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	C15orf2,NS,carcinoma,0,1	.	NM_018958	exon1	c.G799A	p.V267I	CCAGCCGTTGGCT	.	80.0	7.0	87.0	0.0	.	.	.	.	Atlas-SNP
OTUD7A	161725	hgsc.bcm.edu	hg19	15	31776670	31776670	+	Silent	SNP	G	G	A	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	.	OTUD7A	NM_130901	exon11	c.C1608T	p.G536G	CAGGCCGCCGAGG	.	27.0	7.0	18.0	0.0	.	89	.	.	Atlas-SNP
HIRIP3	8479	hgsc.bcm.edu	hg19	16	30006907	30006907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	.	HIRIP3	NM_001197323	exon1	c.T20C	p.M7T	TCCTGCATCTCCT	.	105.0	26.0	116.0	0.0	.	45	.	.	Atlas-SNP
CLTC	1213	hgsc.bcm.edu	hg19	17	57761270	57761270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	.	CLTC	NM_004859	exon28	c.G4358A	p.R1453H	ATTTGCGTTCAGT	.	195.0	8.0	194.0	0.0	.	124	.	.	Atlas-SNP
RALY	22913	hgsc.bcm.edu	hg19	20	32664865	32664865	+	Silent	SNP	C	C	T	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	.,1	RALY	NM_016732	exon8	c.C690T	p.A230A	TGGCGCCGGCGGC	.	112.0	0.0	126.0	0.0	.	44	.	.	Atlas-SNP
FAM3A	60343	hgsc.bcm.edu	hg19	X	153735650	153735650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	.	FAM3A	NM_001171132	exon9	c.G481C	p.E161Q	TGGTCTCTTCATT	.	99.0	13.0	128.0	0.0	.	11	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38964339	38964340	+	Frame_Shift_Ins	INS	-	-	GGGGG	novel		TCGA-5R-AA1D-01A-11D-A382-10	TCGA-5R-AA1D-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1510db4c-4fd4-4758-b172-d85cc12cbf3f	0719e29a-6ab4-4c61-96ad-a9e3162b45fd	.	RYR1	NM_001042723	exon28	c.4088_4089insGGGGG	p.A1363fs	.	.	241.0	20.0	326.0	0.0	.	708	.	.	Atlas-INDEL