Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
DOCK7	85440	hgsc.bcm.edu	hg19	1	62995020	62995020	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DOCK7	NM_001271999	exon30	c.C3709G	p.R1237G	CCACTCGAGCCTT	.	117.0	6.0	94.0	0.0	.	184	.	.	Atlas-SNP
DPYD	1806	hgsc.bcm.edu	hg19	1	97981322	97981322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DPYD	NM_000110	exon13	c.G1700T	p.G567V	CCCCATCCAGCTT	.	72.0	18.0	61.0	0.0	.	219	.	.	Atlas-SNP
LPPR5	0	hgsc.bcm.edu	hg19	1	99358645	99358645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001037317	exon6	c.T949C	p.F317L	CTGCGAAGGCAGT	.	115.0	52.0	116.0	0.0	.	.	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152282032	152282032	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	FLG,NS,carcinoma,0,1	FLG	NM_002016	exon3	c.C5330G	p.S1777C	TGGGCGGACTCAG	.	434.0	99.0	365.0	0.0	.	900	.	.	Atlas-SNP
TRIM46	80128	hgsc.bcm.edu	hg19	1	155148663	155148663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TRIM46	NM_025058	exon3	c.G625T	p.A209S	CAGAAGGCCCAGC	.	50.0	25.0	44.0	0.0	.	79	.	.	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	hg19	1	155385687	155385687	+	Silent	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ASH1L	NM_018489	exon6	c.C5856A	p.P1952P	AGGACTGGGAATC	.	89.0	4.0	59.0	0.0	.	279	.	.	Atlas-SNP
MROH9	80133	hgsc.bcm.edu	hg19	1	170967421	170967421	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_025063	exon15	c.T1602C	p.S534S	AGTGAGTTTTGTA	.	83.0	4.0	79.0	0.0	.	.	.	.	Atlas-SNP
RGL1	23179	hgsc.bcm.edu	hg19	1	183891363	183891363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RGL1	NM_015149	exon18	c.G2117A	p.S706N	TGACGAGCCAGGA	.	131.0	17.0	140.0	0.0	.	91	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186120388	186120388	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HMCN1	NM_031935	exon94	c.G14665C	p.G4889R	GAATTTGGAATTG	.	85.0	22.0	86.0	0.0	.	797	.	.	Atlas-SNP
PLEKHA6	22874	hgsc.bcm.edu	hg19	1	204197269	204197269	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PLEKHA6	NM_014935	exon21	c.G2973T	p.R991R	TTCAATCCGCTTC	.	84.0	31.0	59.0	0.0	.	115	.	.	Atlas-SNP
OR2L5	81466	hgsc.bcm.edu	hg19	1	248186037	248186037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001258284	exon1	c.C788T	p.S263F	CAAGATCCCTGCG	.	191.0	67.0	144.0	0.0	.	.	.	.	Atlas-SNP
TPO	7173	hgsc.bcm.edu	hg19	2	1437304	1437304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TPO	NM_175719	exon4	c.G274A	p.E92K	GCAGCAGAGATAA	.	156.0	8.0	210.0	0.0	.	224	.	.	Atlas-SNP
RTN4	57142	hgsc.bcm.edu	hg19	2	55252314	55252314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RTN4	NM_020532	exon3	c.T2921C	p.V974A	TCTTTCACAAGAA	.	68.0	17.0	66.0	0.0	.	189	.	.	Atlas-SNP
TBC1D8	11138	hgsc.bcm.edu	hg19	2	101648734	101648734	+	Silent	SNP	C	C	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TBC1D8	NM_001102426	exon11	c.G1887C	p.V629V	ACCGATCACTCGG	.	114.0	24.0	159.0	0.0	.	169	.	.	Atlas-SNP
B3GALT1	8708	hgsc.bcm.edu	hg19	2	168725799	168725799	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	B3GALT1	NM_020981	exon2	c.A250T	p.I84F	ATCCTCATCAGCA	.	76.0	15.0	109.0	0.0	.	51	.	.	Atlas-SNP
ITGAV	3685	hgsc.bcm.edu	hg19	2	187540572	187540572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	ITGAV,rectum,carcinoma,0,1	ITGAV	NM_002210	exon28	c.C2846A	p.S949Y	CCTATTCTCTGAA	.	103.0	26.0	125.0	0.0	.	124	.	.	Atlas-SNP
ZSWIM2	151112	hgsc.bcm.edu	hg19	2	187693382	187693382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ZSWIM2	NM_182521	exon9	c.A1231G	p.R411G	TGTCTCTGTTTGA	.	52.0	16.0	57.0	0.0	.	119	.	.	Atlas-SNP
SDPR	8436	hgsc.bcm.edu	hg19	2	192701015	192701015	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SDPR	NM_004657	exon2	c.G912A	p.E304E	TTCTCCCTCTCGG	.	76.0	19.0	94.0	0.0	.	67	.	.	Atlas-SNP
HECW2	57520	hgsc.bcm.edu	hg19	2	197080657	197080657	+	Silent	SNP	T	T	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HECW2	NM_020760	exon28	c.A4539T	p.S1513S	TCGGAGTGAAGCA	.	58.0	21.0	43.0	0.0	.	239	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238255172	238255172	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	COL6A3	NM_004369	exon32	c.G7066T	p.G2356X	GGTCTCCCTTCTG	.	91.0	21.0	102.0	0.0	.	608	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	T	rs121913403	bycluster	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	CTNNB1,gallbladder,other,0,1	CTNNB1	NM_001098209	exon3	c.C110T	p.S37F	TCCATTCTGGTGC	.	257.0	96.0	253.0	0.0	.	4904	.	.	Atlas-SNP
FLNB	2317	hgsc.bcm.edu	hg19	3	58116537	58116537	+	Missense_Mutation	SNP	T	T	A	rs80356511	alternate_allele	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	FLNB	NM_001457	exon25	c.T4292A	p.L1431Q	CCGGGCTGGGCTC	.	101.0	20.0	109.0	0.0	.	430	.	.	Atlas-SNP
KY	339855	hgsc.bcm.edu	hg19	3	134338015	134338015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KY	NM_178554	exon8	c.G685T	p.A229S	GGCCAGCATAGCC	.	206.0	53.0	176.0	0.0	.	92	.	.	Atlas-SNP
ATP13A4	84239	hgsc.bcm.edu	hg19	3	193159259	193159259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ATP13A4	NM_032279	exon20	c.C2435A	p.P812Q	ACCTTTGGCAGTA	.	149.0	64.0	164.0	0.0	.	154	.	.	Atlas-SNP
ZNF718	255403	hgsc.bcm.edu	hg19	4	59340	59340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001039127	exon2	c.G21T	p.R7S	ATTCAGGGATGTG	.	308.0	18.0	328.0	0.0	.	.	.	.	Atlas-SNP
SORCS2	57537	hgsc.bcm.edu	hg19	4	7726889	7726889	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SORCS2	NM_020777	exon20	c.C2620T	p.Q874X	CCCCTGCAGGCCC	.	56.0	12.0	61.0	0.0	.	98	.	.	Atlas-SNP
PDS5A	23244	hgsc.bcm.edu	hg19	4	39876002	39876002	+	Silent	SNP	T	T	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PDS5A	NM_001100399	exon20	c.A2184T	p.A728A	CCTCTTTGCTTTT	.	69.0	14.0	55.0	0.0	.	114	.	.	Atlas-SNP
TIGD2	166815	hgsc.bcm.edu	hg19	4	90035516	90035516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TIGD2	NM_145715	exon1	c.A1391G	p.K464R	CCAGTAAGAGTAG	.	81.0	15.0	96.0	0.0	.	36	.	.	Atlas-SNP
ELF2	1998	hgsc.bcm.edu	hg19	4	139983133	139983133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ELF2	NM_006874	exon5	c.G512A	p.R171K	CTCTGAGTCCATT	.	61.0	4.0	67.0	0.0	.	43	.	.	Atlas-SNP
CTNND2	1501	hgsc.bcm.edu	hg19	5	11384929	11384929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CTNND2	NM_001332	exon7	c.C1025T	p.S342F	GAGGAGGAGATGG	.	28.0	9.0	26.0	0.0	.	289	.	.	Atlas-SNP
MROH2B	133558	hgsc.bcm.edu	hg19	5	41042223	41042223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_173489	exon19	c.G1924T	p.A642S	TGGGAGCAGTCAG	.	80.0	32.0	87.0	0.0	.	.	.	.	Atlas-SNP
BDP1	55814	hgsc.bcm.edu	hg19	5	70840961	70840961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	BDP1,NS,carcinoma,0,1	BDP1	NM_018429	exon32	c.A6659T	p.D2220V	GTTTGGATAGGGG	.	82.0	17.0	101.0	0.0	.	204	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89943506	89943506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	GPR98	NM_032119	exon17	c.A3214G	p.I1072V	CAGAGCATATCCA	.	107.0	52.0	128.0	0.0	.	605	.	.	Atlas-SNP
KCNN2	3781	hgsc.bcm.edu	hg19	5	113798833	113798833	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KCNN2	NM_021614	exon4	c.C1089T	p.D363D	TGGTGACATGGTA	.	306.0	62.0	283.0	0.0	.	144	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150885501	150885501	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	FAT2	NM_001447	exon23	c.C12675T	p.G4225G	GGGGAAGCCCCCA	.	32.0	8.0	19.0	0.0	.	465	.	.	Atlas-SNP
LCP2	3937	hgsc.bcm.edu	hg19	5	169689860	169689860	+	Silent	SNP	C	C	T	rs373086683	alternate_allele	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	LCP2	NM_005565	exon12	c.G804A	p.S268S	TGGAATCGAGGGC	.	195.0	31.0	175.0	0.0	.	133	.	.	Atlas-SNP
HRH2	3274	hgsc.bcm.edu	hg19	5	175110734	175110734	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HRH2	NM_001131055	exon2	c.G498A	p.K166K	CAGCAAGGGCAAT	.	218.0	14.0	206.0	0.0	.	108	.	.	Atlas-SNP
CCHCR1	54535	hgsc.bcm.edu	hg19	6	31113531	31113531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CCHCR1	NM_001105564	exon11	c.G1635T	p.Q545H	GGGAAGCTGGGCG	.	78.0	25.0	92.0	0.0	.	68	.	.	Atlas-SNP
BVES	11149	hgsc.bcm.edu	hg19	6	105573357	105573357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	BVES	NM_001199563	exon4	c.T448A	p.C150S	TCATGCAAAACTG	.	161.0	54.0	136.0	0.0	.	33	.	.	Atlas-SNP
HIVEP2	3097	hgsc.bcm.edu	hg19	6	143095836	143095836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HIVEP2	NM_006734	exon5	c.T40G	p.S14A	ACCTTGAGGTAGC	.	237.0	89.0	177.0	0.0	.	225	.	.	Atlas-SNP
C7orf72	100130988	hgsc.bcm.edu	hg19	7	50136120	50136120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	C7orf72	NM_001161834	exon1	c.A439G	p.T147A	CCAGACACAGGAT	.	99.0	29.0	88.0	0.0	.	26	.	.	Atlas-SNP
GNAI1	2770	hgsc.bcm.edu	hg19	7	79833109	79833109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	GNAI1	NM_002069	exon5	c.T551C	p.I184T	CAGGAATTGTTGA	.	150.0	40.0	102.0	0.0	.	44	.	.	Atlas-SNP
KIAA1324L	222223	hgsc.bcm.edu	hg19	7	86526919	86526919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KIAA1324L	NM_001142749	exon19	c.G2588A	p.C863Y	AACGTACACCCAT	.	122.0	30.0	98.0	0.0	.	225	.	.	Atlas-SNP
CPA4	51200	hgsc.bcm.edu	hg19	7	129951882	129951882	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CPA4	NM_016352	exon10	c.A998T	p.K333M	AGGACAAGGTGGC	.	127.0	34.0	99.0	0.0	.	47	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113240991	113240991	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CSMD3	NM_198123	exon70	c.A10958C	p.K3653T	CTTTGTTTATAAA	.	33.0	19.0	37.0	0.0	.	2325	.	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	133906037	133906037	+	Missense_Mutation	SNP	A	A	T	rs61736740	alternate_allele	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TG	NM_003235	exon11	c.A2864T	p.E955V	TGGGGGAGAGTTT	.	247.0	109.0	236.0	1.0	.	416	.	A|0.987;C|0.013	Atlas-SNP
KIAA2026	158358	hgsc.bcm.edu	hg19	9	5922603	5922603	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KIAA2026	NM_001017969	exon8	c.T3393C	p.G1131G	TTCTGTACCTTTC	.	93.0	36.0	105.0	0.0	.	231	.	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113312196	113312196	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SVEP1	NM_153366	exon2	c.G720A	p.E240E	GTGCTCCTCCTTT	.	189.0	38.0	207.0	0.0	.	326	.	.	Atlas-SNP
NLRP14	338323	hgsc.bcm.edu	hg19	11	7064361	7064361	+	Silent	SNP	C	C	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NLRP14	NM_176822	exon4	c.C1104G	p.V368V	CCAAGTCCCCCTA	.	102.0	15.0	77.0	0.0	.	187	.	.	Atlas-SNP
MRGPRX1	259249	hgsc.bcm.edu	hg19	11	18955438	18955438	+	Silent	SNP	C	C	A	rs374955450	alternate_allele	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	MRGPRX1	NM_147199	exon1	c.G894T	p.A298A	CTCAGACGCGTCC	.	89.0	22.0	67.0	0.0	.	84	.	.	Atlas-SNP
NELL1	4745	hgsc.bcm.edu	hg19	11	20699518	20699518	+	Silent	SNP	C	C	A	rs146112225	alternate_allele	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NELL1	NM_006157	exon2	c.C96A	p.I32I	GGATATCGTCACC	.	231.0	79.0	178.0	0.0	.	179	.	C|1.000;T|0.000	Atlas-SNP
OR5W2	390148	hgsc.bcm.edu	hg19	11	55681596	55681596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	OR5W2	NM_001001960	exon1	c.G463A	p.D155N	AAGCATCTGCTAT	.	83.0	35.0	77.0	0.0	.	112	.	.	Atlas-SNP
ENDOD1	23052	hgsc.bcm.edu	hg19	11	94861677	94861677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ENDOD1	NM_015036	exon2	c.C437G	p.P146R	TTTACCCATTCTC	.	254.0	81.0	262.0	0.0	.	26	.	.	Atlas-SNP
RAB39A	54734	hgsc.bcm.edu	hg19	11	107799388	107799388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_017516	exon1	c.C94T	p.R32C	CAGGGCCGCTTCC	.	19.0	8.0	15.0	0.0	.	.	.	.	Atlas-SNP
APOA4	337	hgsc.bcm.edu	hg19	11	116693445	116693445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	APOA4	NM_000482	exon2	c.A106G	p.S36G	GCTGGCTGAAGTA	.	119.0	41.0	97.0	0.0	.	51	.	.	Atlas-SNP
CACNA2D4	93589	hgsc.bcm.edu	hg19	12	1993990	1993990	+	Missense_Mutation	SNP	C	C	A	rs375148197	alternate_allele	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CACNA2D4	NM_172364	exon11	c.G1216T	p.G406C	CGGCGCCGTCGCT	.	184.0	42.0	197.0	0.0	.	220	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70986132	70986132	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PTPRB	NM_001109754	exon7	c.A1710G	p.R570R	ATAAAGTCGACCG	.	97.0	11.0	114.0	0.0	.	676	.	.	Atlas-SNP
TAOK3	51347	hgsc.bcm.edu	hg19	12	118639243	118639243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TAOK3	NM_016281	exon12	c.C845T	p.P282L	CGTAGTGGCCGGT	.	107.0	44.0	82.0	0.0	.	151	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35692392	35692392	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NBEA	NM_015678	exon15	c.C2110T	p.Q704X	GAACTTCAGAGTA	.	54.0	13.0	111.0	0.0	.	340	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35692394	35692394	+	Missense_Mutation	SNP	G	G	C	rs376099257	alternate_allele	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NBEA	NM_015678	exon15	c.G2112C	p.Q704H	ACTTCAGAGTATA	.	56.0	13.0	112.0	0.0	.	340	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35734090	35734090	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NBEA	NM_015678	exon22	c.T3782G	p.I1261S	GTATAATTTCAGA	.	62.0	22.0	38.0	0.0	.	340	.	.	Atlas-SNP
ARHGEF7	8874	hgsc.bcm.edu	hg19	13	111932983	111932983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ARHGEF7	NM_001113511	exon16	c.G1747A	p.G583R	TCTGTGGGAAACC	.	119.0	32.0	120.0	0.0	.	157	.	.	Atlas-SNP
NDRG2	57447	hgsc.bcm.edu	hg19	14	21487891	21487891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NDRG2	NM_201537	exon10	c.C623A	p.S208Y	TTTCCAGAGAGCT	.	87.0	27.0	72.0	0.0	.	37	.	.	Atlas-SNP
NDRG2	57447	hgsc.bcm.edu	hg19	14	21487892	21487892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NDRG2	NM_201537	exon10	c.T622C	p.S208P	TTCCAGAGAGCTC	.	87.0	27.0	71.0	0.0	.	37	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64554464	64554464	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SYNE2	NM_182914	exon58	c.A11560C	p.I3854L	TCAATAATTTTTG	.	110.0	34.0	107.0	0.0	.	577	.	.	Atlas-SNP
ZFP36L1	677	hgsc.bcm.edu	hg19	14	69259685	69259685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ZFP36L1	NM_001244701	exon2	c.C178T	p.P60S	GGCGAGGATCTGG	.	30.0	7.0	46.0	0.0	.	47	.	.	Atlas-SNP
EML5	161436	hgsc.bcm.edu	hg19	14	89206879	89206879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	EML5	NM_183387	exon5	c.G563A	p.R188Q	ACACCTCGTTTTG	.	125.0	35.0	121.0	0.0	.	141	.	.	Atlas-SNP
ZNF839	55778	hgsc.bcm.edu	hg19	14	102792471	102792471	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ZNF839	NM_018335	exon2	c.C438T	p.A146A	TATCGCCAGCCCT	.	67.0	14.0	98.0	0.0	.	41	.	.	Atlas-SNP
MKRN3	7681	hgsc.bcm.edu	hg19	15	23812394	23812394	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	MKRN3,NS,carcinoma,0,1	MKRN3	NM_005664	exon1	c.G1465T	p.E489X	TTCTCTGAGGACC	.	124.0	40.0	121.0	0.0	.	155	.	.	Atlas-SNP
DMXL2	23312	hgsc.bcm.edu	hg19	15	51756896	51756896	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DMXL2	NM_001174116	exon32	c.T7784G	p.L2595R	GGTTCTAGCATTG	.	65.0	15.0	120.0	0.0	.	262	.	.	Atlas-SNP
PEAK1	0	hgsc.bcm.edu	hg19	15	77471864	77471864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_024776	exon5	c.A2405G	p.D802G	TCAGCATCTGGAG	.	87.0	19.0	122.0	0.0	.	.	.	.	Atlas-SNP
BAIAP3	8938	hgsc.bcm.edu	hg19	16	1384728	1384728	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	BAIAP3	NM_003933	exon1	c.C66A	p.I22I	CGCCATCGGCTTC	.	79.0	35.0	99.0	0.0	.	88	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578275	7578275	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	TP53_ENST00000545858,NS,carcinoma,0,1	TP53	NM_000546	exon6	c.C574T	p.Q192X	GATGCTGAGGAGG	.	113.0	47.0	167.0	0.0	.	33396	.	.	Atlas-SNP
PIGS	94005	hgsc.bcm.edu	hg19	17	26888556	26888556	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PIGS	NM_033198	exon6	c.T560A	p.V187D	ACCTGGACTATGC	.	130.0	49.0	144.0	0.0	.	42	.	.	Atlas-SNP
MED13	9969	hgsc.bcm.edu	hg19	17	60038954	60038954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	MED13	NM_005121	exon22	c.C5251A	p.P1751T	CATCAGGACTTCT	.	81.0	31.0	87.0	0.0	.	181	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	6958645	6958645	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	LAMA1	NM_005559	exon55	c.T7795C	p.L2599L	CATCCAATTGGAC	.	89.0	24.0	98.0	0.0	.	458	.	.	Atlas-SNP
TAF4B	6875	hgsc.bcm.edu	hg19	18	23854650	23854650	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TAF4B	NM_005640	exon4	c.C621T	p.V207V	CAGTGTCGTCACA	.	129.0	21.0	187.0	0.0	.	71	.	.	Atlas-SNP
ELAVL1	1994	hgsc.bcm.edu	hg19	19	8032602	8032602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ELAVL1	NM_001419	exon5	c.A503G	p.N168S	TGACCATTGAAAC	.	146.0	46.0	146.0	0.0	.	44	.	.	Atlas-SNP
FBN3	84467	hgsc.bcm.edu	hg19	19	8196686	8196686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	FBN3	NM_032447	exon14	c.T1742C	p.I581T	ACGCAGATGCCGG	.	54.0	8.0	42.0	0.0	.	300	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9015640	9015640	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	MUC16	NM_024690	exon29	c.A38183C	p.E12728A	ACTCTCTCTGTGG	.	172.0	58.0	201.0	0.0	.	4315	.	.	Atlas-SNP
CC2D1A	54862	hgsc.bcm.edu	hg19	19	14024108	14024108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CC2D1A	NM_017721	exon5	c.G506A	p.G169E	ATCGGGGGCTTAA	.	86.0	30.0	86.0	0.0	.	67	.	.	Atlas-SNP
ZNF714	148206	hgsc.bcm.edu	hg19	19	21299717	21299717	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ZNF714	NM_182515	exon5	c.T247G	p.L83V	GAGAATTTACAGT	.	177.0	51.0	171.0	0.0	.	121	.	.	Atlas-SNP
CCNE1	898	hgsc.bcm.edu	hg19	19	30311721	30311721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CCNE1	NM_001238	exon7	c.G575C	p.G192A	TTATTGGGATTTC	.	89.0	22.0	117.0	0.0	.	49	.	.	Atlas-SNP
C19orf55	148137	hgsc.bcm.edu	hg19	19	36256039	36256039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	C19orf55	NM_001039887	exon7	c.T731C	p.I244T	CCTTCATCCCTGA	.	68.0	15.0	79.0	0.0	.	39	.	.	Atlas-SNP
DYRK1B	9149	hgsc.bcm.edu	hg19	19	40316849	40316849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DYRK1B	NM_004714	exon10	c.A1489G	p.I497V	CTGTGATAGGGGG	.	32.0	7.0	46.0	0.0	.	114	.	.	Atlas-SNP
CEACAM5	1048	hgsc.bcm.edu	hg19	19	42212653	42212653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CEACAM5	NM_004363	exon1	c.G3A	p.M1I	GACCATGGAGTCT	.	45.0	7.0	67.0	0.0	.	84	.	.	Atlas-SNP
ERG	2078	hgsc.bcm.edu	hg19	21	39817538	39817538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ERG	NM_001243432	exon4	c.T46G	p.L16V	CTGATAAGGCTTC	.	291.0	56.0	248.0	0.0	.	78	.	.	Atlas-SNP
TXN2	25828	hgsc.bcm.edu	hg19	22	36876748	36876748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TXN2	NM_012473	exon2	c.C137T	p.P46L	GGGTTGGGTGTTA	.	66.0	15.0	113.0	0.0	.	15	.	.	Atlas-SNP
KIAA2022	340533	hgsc.bcm.edu	hg19	X	73960550	73960550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KIAA2022	NM_001008537	exon3	c.G3842T	p.G1281V	CAATCTCCAGAAA	.	44.0	22.0	53.0	0.0	.	262	.	.	Atlas-SNP
RAP2C	57826	hgsc.bcm.edu	hg19	X	131348421	131348421	+	Silent	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RAP2C	NM_021183	exon3	c.C327G	p.V109V	TAGTGGGACTTTT	.	71.0	33.0	104.0	0.0	.	22	.	.	Atlas-SNP
VEPH1	79674	hgsc.bcm.edu	hg19	3	157146119	157146120	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	VEPH1	NM_024621	exon5	c.688_689insA	p.Q230fs	.	.	132.0	40.0	122.0	0.0	.	129	.	.	Atlas-INDEL
NLRP3	114548	hgsc.bcm.edu	hg19	1	247588695	247588695	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NLRP3	NM_004895	exon3	c.1949delT	p.F650fs	.	.	236.0	96.0	253.0	0.0	.	286	.	.	Atlas-Indel,Pindel
LCP2	3937	hgsc.bcm.edu	hg19	5	169689858	169689859	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	LCP2	NM_005565	exon12	c.806_807insA	p.I269fs	.	.	194.0	30.0	179.0	0.0	.	133	.	.	Atlas-INDEL
MAP2K4	6416	hgsc.bcm.edu	hg19	17	12013730	12013731	+	In_Frame_Ins	INS	-	-	ATT	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	MAP2K4	NM_003010	exon6	c.672_673insATT	p.K224delinsKI	.	.	48.0	14.0	103.0	0.0	.	176	.	.	Atlas-INDEL
RASGRF1	5923	hgsc.bcm.edu	hg19	15	79382797	79382799	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RASGRF1	NM_001145648	exon1	c.43_45del	p.15_15del	.	.	55.0	10.0	94.0	0.0	.	168	.	.	Atlas-INDEL
ARID1A	8289	hgsc.bcm.edu	hg19	1	27106299	27106300	+	Frame_Shift_Ins	INS	-	-	CTGGA	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ARID1A	NM_006015	exon20	c.5910_5911insCTGGA	p.L1970fs	.	.	106.0	22.0	103.0	0.0	.	842	.	.	Atlas-INDEL
AFF4	27125	hgsc.bcm.edu	hg19	5	132269980	132269980	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	AFF4	NM_014423	exon3	c.778delA	p.M260fs	.	.	368.0	86.0	274.0	0.0	.	120	.	.	Pindel