Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm MST1L 11223 hgsc.bcm.edu hg19 1 17085033 17085033 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . . NM_001271733 exon11 c.A1442T p.Q481L CGACGCTGATCCA . 510.0 79.0 710.0 0.0 . . . . Atlas-SNP MED18 54797 hgsc.bcm.edu hg19 1 28657195 28657195 + Missense_Mutation SNP A A G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . MED18 NM_017638 exon2 c.A22G p.M8V GTCACCATGATGC . 137.0 113.0 159.0 0.0 . 30 . . Atlas-SNP HIVEP3 59269 hgsc.bcm.edu hg19 1 42048714 42048714 + Silent SNP C C G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . HIVEP3 NM_024503 exon4 c.G1755C p.R585R CAGCATCCGGGGG . 91.0 68.0 115.0 0.0 . 235 . . Atlas-SNP SLC44A5 204962 hgsc.bcm.edu hg19 1 75683603 75683603 + Silent SNP T T G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . SLC44A5 NM_152697 exon18 c.A1572C p.A524A AATTAATGCAATA . 102.0 71.0 126.0 0.0 . 231 . . Atlas-SNP PDE4DIP 9659 hgsc.bcm.edu hg19 1 144923732 144923732 + Silent SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PDE4DIP NM_001002811 exon2 c.A1215T p.A405A GAGTTCTGCCAAG . 448.0 125.0 410.0 0.0 . 817 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152081179 152081179 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . TCHH NM_007113 exon3 c.A4514T p.E1505V TCCTGTTCGCGGA . 198.0 33.0 122.0 0.0 . 275 . . Atlas-SNP PGLYRP4 57115 hgsc.bcm.edu hg19 1 153318651 153318651 + Missense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe PGLYRP4,NS,carcinoma,0,1 PGLYRP4 NM_020393 exon3 c.C66A p.N22K TGTTTTGTTCCAG . 302.0 141.0 229.0 0.0 . 45 . . Atlas-SNP EFNA4 1945 hgsc.bcm.edu hg19 1 155039354 155039354 + Missense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . EFNA4 NM_182690 exon2 c.G262T p.A88S TGCCAGGCAGAGG . 236.0 82.0 172.0 0.0 . 11 . . Atlas-SNP CD5L 922 hgsc.bcm.edu hg19 1 157804417 157804417 + Silent SNP G G A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . CD5L NM_005894 exon4 c.C498T p.G166G GCTCCAGCCTGTC . 128.0 57.0 92.0 0.0 . 112 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158590172 158590172 + Missense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe SPTA1,NS,carcinoma,0,1 SPTA1 NM_003126 exon44 c.C6205A p.P2069T GCACAGGCTCTGA . 423.0 36.0 307.0 0.0 . 720 . . Atlas-SNP HSPA6 3310 hgsc.bcm.edu hg19 1 161495008 161495008 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . HSPA6 NM_002155 exon1 c.T560A p.L187Q ATGGGCTGGACCG . 314.0 120.0 267.0 0.0 . 53 . . Atlas-SNP COLGALT2 23127 hgsc.bcm.edu hg19 1 183933105 183933105 + Missense_Mutation SNP G G C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . . NM_015101 exon6 c.C882G p.I294M CAGGGGGATGGGC . 286.0 129.0 244.0 0.0 . . . . Atlas-SNP RGS18 64407 hgsc.bcm.edu hg19 1 192128370 192128370 + Missense_Mutation SNP G G C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . RGS18 NM_130782 exon2 c.G140C p.R47T GAAATAGACTAAG . 141.0 15.0 81.0 0.0 . 54 . . Atlas-SNP TROVE2 6738 hgsc.bcm.edu hg19 1 193046176 193046176 + Missense_Mutation SNP T T G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . TROVE2 NM_004600 exon5 c.T1082G p.F361C AAACATTTAAGGT . 154.0 64.0 90.0 0.0 . 50 . . Atlas-SNP WDR64 128025 hgsc.bcm.edu hg19 1 241946598 241946598 + Missense_Mutation SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . WDR64 NM_144625 exon22 c.C2590T p.R864C TCCTGGCGTGCTC . 139.0 14.0 98.0 0.0 . 234 . . Atlas-SNP EXO1 9156 hgsc.bcm.edu hg19 1 242024779 242024779 + Missense_Mutation SNP A A G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . EXO1 NM_006027 exon8 c.A1016G p.D339G AGATCGATGACTA . 95.0 43.0 61.0 0.0 . 103 . . Atlas-SNP CRIM1 51232 hgsc.bcm.edu hg19 2 36691797 36691797 + Silent SNP T T C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . CRIM1 NM_016441 exon5 c.T990C p.N330N TGTTAATGGTACG . 268.0 83.0 294.0 0.0 . 88 . . Atlas-SNP ARHGEF33 100271715 hgsc.bcm.edu hg19 2 39164550 39164550 + Missense_Mutation SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ARHGEF33 NM_001145451 exon7 c.C640T p.H214Y AAGGGCCATCTCC . 154.0 14.0 145.0 0.0 . 34 . . Atlas-SNP TBC1D8 11138 hgsc.bcm.edu hg19 2 101670763 101670763 + Silent SNP G G A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . TBC1D8 NM_001102426 exon4 c.C393T p.A131A CTGCTCGGCGAGC . 87.0 14.0 64.0 0.0 . 169 . . Atlas-SNP CXCR4 7852 hgsc.bcm.edu hg19 2 136872834 136872834 + Missense_Mutation SNP T T A rs374458307 alternate_allele TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . CXCR4 NM_001008540 exon1 c.A676T p.I226F AGATGATAATGCA . 126.0 85.0 133.0 0.0 . 51 . . Atlas-SNP SLC25A12 8604 hgsc.bcm.edu hg19 2 172700890 172700890 + Nonsense_Mutation SNP G G A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . SLC25A12 NM_003705 exon5 c.C454T p.Q152X GAAACTGCGTGAA . 77.0 49.0 85.0 0.0 . 59 . . Atlas-SNP C2orf62 375307 hgsc.bcm.edu hg19 2 219225314 219225314 + Nonsense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . C2orf62 NM_198559 exon5 c.G394T p.E132X CCCATGGAACGGA . 53.0 34.0 39.0 0.0 . 28 . . Atlas-SNP ZNF142 7701 hgsc.bcm.edu hg19 2 219508734 219508734 + Silent SNP G G T rs185508464 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ZNF142 NM_001105537 exon8 c.C2505A p.A835A GCGGAAGGCTCGC . 114.0 30.0 114.0 0.0 . 190 . G|0.998;A|0.002 Atlas-SNP EPHA4 2043 hgsc.bcm.edu hg19 2 222365784 222365784 + Missense_Mutation SNP C C T rs375924623 TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe EPHA4_ENST00000281821,colon,carcinoma,0,2 EPHA4 NM_004438 exon4 c.G932A p.R311Q AAGCCTCGGTCAC . 56.0 12.0 62.0 0.0 . 263 . . Atlas-SNP FBXO36 130888 hgsc.bcm.edu hg19 2 230787284 230787284 + Missense_Mutation SNP C C G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . FBXO36 NM_174899 exon1 c.C55G p.P19A CCGCCGCCTAGCA . 205.0 41.0 248.0 0.0 . 22 . . Atlas-SNP PSMD1 5707 hgsc.bcm.edu hg19 2 231937074 231937074 + Missense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PSMD1 NM_002807 exon7 c.G826T p.A276S CCTATTGCTTCTG . 113.0 18.0 104.0 0.0 . 77 . . Atlas-SNP SCN11A 11280 hgsc.bcm.edu hg19 3 38888226 38888226 + Missense_Mutation SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . SCN11A NM_014139 exon26 c.T5335A p.S1779T AGCTAGACAAGTC . 191.0 99.0 211.0 0.0 . 296 . . Atlas-SNP ARIH2 10425 hgsc.bcm.edu hg19 3 49006060 49006060 + Missense_Mutation SNP G G C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe ARIH2,NS,carcinoma,0,1 ARIH2 NM_006321 exon7 c.G632C p.R211T AATACAGGCGCTA . 145.0 19.0 177.0 0.0 . 32 . . Atlas-SNP PHLDB2 90102 hgsc.bcm.edu hg19 3 111603109 111603109 + Missense_Mutation SNP T T G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PHLDB2 NM_001134437 exon3 c.T266G p.L89R TAACCCTCTCACA . 111.0 68.0 100.0 0.0 . 449 . . Atlas-SNP TMPRSS7 344805 hgsc.bcm.edu hg19 3 111794166 111794166 + Splice_Site SNP A A G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . TMPRSS7 NM_001042575 exon13 c.1406-2A>G . CACCAAAGCCTGC . 104.0 6.0 109.0 0.0 . 126 . . Atlas-SNP CP 1356 hgsc.bcm.edu hg19 3 148927024 148927024 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . CP NM_000096 exon4 c.A755T p.D252V TGGAAGTCTTCGT . 240.0 119.0 261.0 0.0 . 112 . . Atlas-SNP PIK3CA 5290 hgsc.bcm.edu hg19 3 178936082 178936082 + Missense_Mutation SNP G G A rs121913273 TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe PIK3CA_ENST00000263967,NS,carcinoma,0,2 PIK3CA NM_006218 exon10 c.G1624A p.E542K CTCTCTGAAATCA . 361.0 157.0 331.0 0.0 . 8460 . . Atlas-SNP DLG1 1739 hgsc.bcm.edu hg19 3 197023346 197023346 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . DLG1 NM_001204386 exon3 c.A22T p.T8S TCTGGGTATCTGA . 116.0 49.0 81.0 0.0 . 120 . . Atlas-SNP MSANTD1 345222 hgsc.bcm.edu hg19 4 3251094 3251094 + Missense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . MSANTD1 NM_001042690 exon1 c.G145T p.A49S ACGGACGCCGAGA . 90.0 29.0 66.0 0.0 . 14 . . Atlas-SNP KCTD8 386617 hgsc.bcm.edu hg19 4 44177224 44177224 + Missense_Mutation SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . KCTD8 NM_198353 exon2 c.T1005A p.D335E TTTCCTATCTTCA . 113.0 53.0 116.0 0.0 . 96 . . Atlas-SNP TECRL 253017 hgsc.bcm.edu hg19 4 65274943 65274943 + Missense_Mutation SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . TECRL NM_001010874 exon1 c.G127A p.A43T GGCCCGCTGAGAG . 123.0 12.0 123.0 0.0 . 106 . . Atlas-SNP UBE2D3 7323 hgsc.bcm.edu hg19 4 103722609 103722609 + Splice_Site SNP A A C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . UBE2D3 NM_003340 exon7 c.304+2T>G . ATATTTACCTTTA . 239.0 180.0 274.0 0.0 . 25 . . Atlas-SNP FBXW7 55294 hgsc.bcm.edu hg19 4 153273838 153273838 + Silent SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . FBXW7 NM_018315 exon1 c.T45A p.L15L ACAGTAAAGGCAA . 57.0 17.0 55.0 0.0 . 2157 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155243495 155243495 + Silent SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . DCHS2 NM_017639 exon13 c.T2799A p.V933V ATTAACAACTGCC . 110.0 48.0 85.0 0.0 . 594 . . Atlas-SNP VEGFC 7424 hgsc.bcm.edu hg19 4 177605087 177605087 + Missense_Mutation SNP A A C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . VEGFC NM_005429 exon7 c.T1253G p.M418R CTCATCATTTGTG . 108.0 8.0 84.0 0.0 . 94 . . Atlas-SNP MYO10 4651 hgsc.bcm.edu hg19 5 16761637 16761637 + Missense_Mutation SNP C C A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . MYO10 NM_012334 exon17 c.G1675T p.G559C AGATACCTCGGAC . 53.0 29.0 59.0 0.0 . 198 . . Atlas-SNP EGFLAM 133584 hgsc.bcm.edu hg19 5 38350697 38350697 + Missense_Mutation SNP G G C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . EGFLAM NM_001205301 exon4 c.G386C p.R129P CTCCTCGGCATGT . 75.0 23.0 74.0 0.0 . 302 . . Atlas-SNP DMXL1 1657 hgsc.bcm.edu hg19 5 118469442 118469442 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . DMXL1 NM_005509 exon12 c.T1823A p.L608Q GTTCTCTGAATCA . 194.0 52.0 176.0 0.0 . 268 . . Atlas-SNP FBN2 2201 hgsc.bcm.edu hg19 5 127714494 127714494 + Missense_Mutation SNP G G T rs199720456 alternate_allele TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . FBN2 NM_001999 exon12 c.C1693A p.Q565K TCCTCTGGAATCC . 89.0 31.0 102.0 0.0 . 858 . G|0.999;A|0.001 Atlas-SNP ANKHD1 54882 hgsc.bcm.edu hg19 5 139892497 139892497 + Missense_Mutation SNP A A G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ANKHD1 NM_017747 exon23 c.A4189G p.I1397V GCAACAATTACAG . 201.0 125.0 179.0 0.0 . 233 . . Atlas-SNP KIF4B 285643 hgsc.bcm.edu hg19 5 154395188 154395188 + Missense_Mutation SNP A A G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . KIF4B NM_001099293 exon1 c.A1769G p.N590S ATGTCAACCAAGC . 157.0 7.0 145.0 0.0 . 307 . . Atlas-SNP ZNF354C 30832 hgsc.bcm.edu hg19 5 178505747 178505747 + Missense_Mutation SNP C C A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ZNF354C NM_014594 exon5 c.C314A p.T105K AAGAAACATCTCA . 168.0 19.0 153.0 0.0 . 77 . . Atlas-SNP MAK 4117 hgsc.bcm.edu hg19 6 10818123 10818123 + Nonsense_Mutation SNP C C A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . MAK NM_005906 exon4 c.G238T p.E80X TATATTCAAATAT . 150.0 54.0 139.0 0.0 . 47 . . Atlas-SNP HLA-DPB1 3115 hgsc.bcm.edu hg19 6 33048530 33048530 + Missense_Mutation SNP G G A rs41561114 alternate_allele TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . HLA-DPB1 NM_002121 exon2 c.G182A p.R61Q ACAACCGGGAGGA . 100.0 10.0 71.0 0.0 . 28 . . Atlas-SNP SYNGAP1 8831 hgsc.bcm.edu hg19 6 33411166 33411166 + Missense_Mutation SNP G G C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . SYNGAP1 NM_006772 exon15 c.G2837C p.G946A GCCATGGAGGGGG . 123.0 71.0 104.0 0.0 . 202 . . Atlas-SNP PTCHD4 442213 hgsc.bcm.edu hg19 6 48036326 48036326 + Silent SNP C C G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . . NM_001013732 exon1 c.G66C p.V22V GCGAAGCACCTGC . 127.0 61.0 78.0 0.0 . . . . Atlas-SNP TINAG 27283 hgsc.bcm.edu hg19 6 54186162 54186162 + Nonsense_Mutation SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . TINAG NM_014464 exon3 c.C487T p.Q163X ATTGAACAGGTCA . 44.0 26.0 49.0 0.0 . 102 . . Atlas-SNP KCNQ5 56479 hgsc.bcm.edu hg19 6 73879546 73879546 + Missense_Mutation SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . KCNQ5 NM_001160133 exon12 c.C1603T p.P535S CTCACCCCACCAC . 195.0 98.0 150.0 0.0 . 153 . . Atlas-SNP IFNGR1 3459 hgsc.bcm.edu hg19 6 137519200 137519200 + Nonsense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . IFNGR1 NM_000416 exon7 c.A1438T p.R480X TTGGTCTATAACC . 161.0 88.0 137.0 0.0 . 46 . . Atlas-SNP ACAT2 39 hgsc.bcm.edu hg19 6 160184055 160184055 + Nonsense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ACAT2 NM_005891 exon2 c.G160T p.E54X GTGTCTGAGGTCA . 224.0 55.0 214.0 0.0 . 32 . . Atlas-SNP T 6862 hgsc.bcm.edu hg19 6 166571945 166571945 + Missense_Mutation SNP G G A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . T NM_003181 exon9 c.C1166T p.P389L GAGACCGGATGGG . 151.0 48.0 117.0 0.0 . 77 . . Atlas-SNP CARD11 84433 hgsc.bcm.edu hg19 7 2968238 2968238 + Missense_Mutation SNP T T C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . CARD11 NM_032415 exon13 c.A1748G p.H583R CTGCGATGGGGCG . 27.0 9.0 57.0 0.0 . 339 . . Atlas-SNP ADCY1 107 hgsc.bcm.edu hg19 7 45688359 45688359 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ADCY1 NM_021116 exon5 c.T1111A p.C371S CACTGCTGTGTGG . 184.0 75.0 266.0 0.0 . 187 . . Atlas-SNP ADCY1 107 hgsc.bcm.edu hg19 7 45717579 45717579 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ADCY1 NM_021116 exon9 c.T1717A p.L573I CGCCTCTTAGAAG . 180.0 61.0 222.0 0.0 . 187 . . Atlas-SNP GRM3 2913 hgsc.bcm.edu hg19 7 86416221 86416221 + Silent SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . GRM3 NM_000840 exon3 c.C1113T p.R371R CAGGCGCGTCTGC . 88.0 36.0 95.0 0.0 . 237 . . Atlas-SNP SAMD9 54809 hgsc.bcm.edu hg19 7 92732475 92732475 + Missense_Mutation SNP C C A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . SAMD9 NM_001193307 exon2 c.G2936T p.C979F ACTCCACAGTAGT . 122.0 47.0 147.0 0.0 . 239 . . Atlas-SNP RELN 5649 hgsc.bcm.edu hg19 7 103292164 103292164 + Silent SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . RELN NM_173054 exon15 c.C1836A p.I612I AGCACAGATCTCA . 76.0 42.0 104.0 0.0 . 593 . . Atlas-SNP PRSS37 136242 hgsc.bcm.edu hg19 7 141537672 141537672 + Missense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PRSS37 NM_001171951 exon3 c.C418A p.Q140K TTTCTTGGCTCCA . 175.0 78.0 214.0 0.0 . 42 . . Atlas-SNP PIWIL2 55124 hgsc.bcm.edu hg19 8 22146165 22146165 + Silent SNP T T C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PIWIL2 NM_001135721 exon8 c.T972C p.N324N CTACAATGTTGTT . 188.0 105.0 185.0 0.0 . 100 . . Atlas-SNP IDO2 169355 hgsc.bcm.edu hg19 8 39873103 39873103 + Silent SNP C C A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . IDO2 NM_194294 exon11 c.C1245A p.I415I GTCAATCCTTCAC . 92.0 39.0 95.0 0.0 . 78 . . Atlas-SNP PXDNL 137902 hgsc.bcm.edu hg19 8 52322116 52322116 + Missense_Mutation SNP G G A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PXDNL NM_144651 exon17 c.C2068T p.R690W TGTACCGGAATTC . 108.0 56.0 121.0 0.0 . 414 . . Atlas-SNP RB1CC1 9821 hgsc.bcm.edu hg19 8 53540730 53540730 + Splice_Site SNP T T G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . RB1CC1 NM_014781 exon23 c.4500-2A>C . GAAAACTGAATAA . 75.0 22.0 51.0 0.0 . 163 . . Atlas-SNP CA8 767 hgsc.bcm.edu hg19 8 61193683 61193683 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . CA8 NM_004056 exon1 c.A24T p.E8D GGTATCTTCGATG . 44.0 19.0 44.0 0.0 . 31 . . Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 69104009 69104009 + Missense_Mutation SNP G G T rs202233704 by1000genomes;alternate_allele TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe PREX2,colon,carcinoma,0,1 PREX2 NM_024870 exon36 c.G4399T p.A1467S AAAGCTGCCTATG . 445.0 26.0 233.0 0.0 . 614 . G|1.000;A|0.000 Atlas-SNP FABP9 646480 hgsc.bcm.edu hg19 8 82371529 82371529 + Silent SNP C C A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . FABP9 NM_001080526 exon2 c.G117T p.P39P TACTGTCGGTTTC . 249.0 59.0 150.0 0.0 . 15 . . Atlas-SNP OXR1 55074 hgsc.bcm.edu hg19 8 107719001 107719001 + Nonsense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . OXR1 NM_001198532 exon8 c.G1255T p.E419X AATCTTGAAATGG . 177.0 19.0 80.0 0.0 . 190 . . Atlas-SNP TRPS1 7227 hgsc.bcm.edu hg19 8 116599692 116599692 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . TRPS1 NM_014112 exon5 c.A2236T p.I746L TGGATATGGCATG . 465.0 84.0 267.0 0.0 . 516 . . Atlas-SNP ANKRD18B 441459 hgsc.bcm.edu hg19 9 33548138 33548138 + Missense_Mutation SNP T T G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ANKRD18B NM_001244752 exon9 c.T1163G p.I388R AAATGATAACAAA . 113.0 92.0 154.0 0.0 . 46 . . Atlas-SNP PIP5K1B 8395 hgsc.bcm.edu hg19 9 71491629 71491629 + Silent SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PIP5K1B NM_003558 exon6 c.A237T p.P79P CTACCCAGACTTT . 127.0 57.0 102.0 0.0 . 40 . . Atlas-SNP SCAI 286205 hgsc.bcm.edu hg19 9 127734043 127734043 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . SCAI NM_173690 exon17 c.A1549T p.S517C GCATGCTTGACAA . 197.0 93.0 147.0 0.0 . 84 . . Atlas-SNP CRAT 1384 hgsc.bcm.edu hg19 9 131859581 131859581 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . CRAT NM_000755 exon12 c.A1475T p.K492M TCCACCTTCTGGT . 67.0 27.0 45.0 0.0 . 43 . . Atlas-SNP MAMDC4 158056 hgsc.bcm.edu hg19 9 139749459 139749459 + Missense_Mutation SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . MAMDC4 NM_206920 exon10 c.C1094T p.P365L TGGGGCCCGGCGC . 74.0 37.0 42.0 0.0 . 117 . . Atlas-SNP NET1 10276 hgsc.bcm.edu hg19 10 5494450 5494450 + Missense_Mutation SNP A A G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . NET1 NM_001047160 exon5 c.A493G p.K165E ACCATGAAGGAGT . 146.0 8.0 109.0 0.0 . 82 . . Atlas-SNP ARMC3 219681 hgsc.bcm.edu hg19 10 23244747 23244747 + Missense_Mutation SNP A A G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ARMC3 NM_173081 exon4 c.A178G p.K60E GAAAATAAAACAA . 64.0 19.0 43.0 0.0 . 102 . . Atlas-SNP ANKRD26 22852 hgsc.bcm.edu hg19 10 27324233 27324233 + Missense_Mutation SNP T T C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ANKRD26 NM_014915 exon24 c.A3146G p.N1049S TCAAAATTCATTT . 155.0 69.0 126.0 0.0 . 179 . . Atlas-SNP PCDH15 65217 hgsc.bcm.edu hg19 10 55996688 55996688 + Nonsense_Mutation SNP C C A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PCDH15 NM_001142763 exon10 c.G895T p.E299X TCAGTTCTTCCTG . 156.0 42.0 129.0 0.0 . 1715 . . Atlas-SNP SYNPO2L 79933 hgsc.bcm.edu hg19 10 75414002 75414002 + Nonsense_Mutation SNP G G A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . SYNPO2L NM_001114133 exon2 c.C142T p.R48X TCTCTCGGAGTCC . 143.0 14.0 175.0 0.0 . 118 . . Atlas-SNP SLC18A2 6571 hgsc.bcm.edu hg19 10 119001223 119001223 + Missense_Mutation SNP G G C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . SLC18A2 NM_003054 exon2 c.G19C p.A7P GAGCTGGCGCTGG . 61.0 38.0 86.0 0.0 . 58 . . Atlas-SNP DOCK1 1793 hgsc.bcm.edu hg19 10 128798514 128798514 + Missense_Mutation SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . DOCK1 NM_001380 exon10 c.A928T p.R310W GAGCTGAGGGACA . 125.0 46.0 132.0 0.0 . 188 . . Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 135009191 135009191 + Missense_Mutation SNP G G A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . KNDC1 NM_152643 exon10 c.G1600A p.V534I GCCGCCGTTCTGT . 257.0 65.0 346.0 0.0 . 155 . . Atlas-SNP OR9G9 504191 hgsc.bcm.edu hg19 11 56468094 56468094 + Silent SNP C C A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . . NM_001013358 exon1 c.C231A p.T77T CTACACCCCAAAG . 234.0 53.0 199.0 0.0 . . . . Atlas-SNP MYRF 745 hgsc.bcm.edu hg19 11 61547380 61547380 + Missense_Mutation SNP C C G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . . NM_001127392 exon17 c.C2314G p.L772V ATTGCCCTGGTGG . 270.0 129.0 296.0 0.0 . . . . Atlas-SNP AHNAK 79026 hgsc.bcm.edu hg19 11 62292811 62292811 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . AHNAK NM_001620 exon5 c.A9078T p.K3026N GGGCATTTTCACT . 162.0 67.0 165.0 0.0 . 532 . . Atlas-SNP SPTBN2 6712 hgsc.bcm.edu hg19 11 66463896 66463896 + Missense_Mutation SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe SPTBN2,NS,carcinoma,0,1 SPTBN2 NM_006946 exon20 c.G4130A p.R1377H AGGCTGCGGGCCT . 66.0 23.0 48.0 0.0 . 188 . . Atlas-SNP B3GNT6 192134 hgsc.bcm.edu hg19 11 76751585 76751585 + Splice_Site SNP T T C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe .,2 B3GNT6 NM_138706 exon3 c.988+1T>C . GCATCCTGGCCCT . 13.0 4.0 6.0 0.0 . 27 . . Atlas-SNP NCAM1 4684 hgsc.bcm.edu hg19 11 113078628 113078628 + Missense_Mutation SNP A A G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . NCAM1 NM_001242608 exon8 c.A820G p.I274V CTGACCATCAAAA . 95.0 37.0 75.0 0.0 . 372 . . Atlas-SNP DSCAML1 57453 hgsc.bcm.edu hg19 11 117301488 117301488 + Missense_Mutation SNP G G A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . DSCAML1 NM_020693 exon32 c.C5816T p.A1939V CGGTCCGCATCCT . 152.0 9.0 140.0 0.0 . 286 . . Atlas-SNP STAT6 6778 hgsc.bcm.edu hg19 12 57493655 57493655 + Missense_Mutation SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . STAT6 NM_001178079 exon15 c.G1639A p.V547I TAGTAACGTACTG . 169.0 43.0 185.0 0.0 . 69 . . Atlas-SNP ARHGEF25 115557 hgsc.bcm.edu hg19 12 58008160 58008160 + Silent SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ARHGEF25 NM_001111270 exon8 c.C820T p.L274L GATTGGCTGGCTC . 152.0 12.0 149.0 0.0 . 111 . . Atlas-SNP HELB 92797 hgsc.bcm.edu hg19 12 66703544 66703544 + Missense_Mutation SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . HELB NM_033647 exon4 c.A836T p.Q279L TTTGTCAGTGTGA . 156.0 101.0 147.0 0.0 . 90 . . Atlas-SNP OTOGL 283310 hgsc.bcm.edu hg19 12 80730730 80730730 + Missense_Mutation SNP G G C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . OTOGL NM_173591 exon41 c.G4779C p.K1593N TAAGAAGTTAAAT . 116.0 61.0 81.0 0.0 . 235 . . Atlas-SNP PTPRQ 374462 hgsc.bcm.edu hg19 12 80936556 80936556 + Missense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PTPRQ NM_001145026 exon20 c.G3253T p.D1085Y ACTTCAGACTTTG . 207.0 25.0 173.0 0.0 . 119 . . Atlas-SNP ANO4 121601 hgsc.bcm.edu hg19 12 101381353 101381353 + Missense_Mutation SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ANO4 NM_178826 exon7 c.A534T p.L178F ATGGTTACCTAAG . 86.0 47.0 87.0 0.0 . 183 . . Atlas-SNP STAB2 55576 hgsc.bcm.edu hg19 12 104149204 104149204 + Missense_Mutation SNP A A G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . STAB2 NM_017564 exon62 c.A6839G p.N2280S GACCCAACAAGAG . 156.0 86.0 149.0 0.0 . 370 . . Atlas-SNP HPD 3242 hgsc.bcm.edu hg19 12 122287654 122287654 + Missense_Mutation SNP T T C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . HPD NM_002150 exon8 c.A457G p.I153V GGCCGATGTAGTT . 165.0 36.0 140.0 0.0 . 46 . . Atlas-SNP PCDH9 5101 hgsc.bcm.edu hg19 13 67801363 67801363 + Nonsense_Mutation SNP C C A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PCDH9 NM_203487 exon2 c.G1210T p.E404X CTCTTTCAATAAA . 71.0 62.0 108.0 0.0 . 252 . . Atlas-SNP UNC79 57578 hgsc.bcm.edu hg19 14 94079314 94079314 + Missense_Mutation SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . UNC79 NM_020818 exon27 c.A3395T p.K1132M CGGTCAAGCGACA . 104.0 84.0 136.0 0.0 . 366 . . Atlas-SNP DUOX1 53905 hgsc.bcm.edu hg19 15 45427708 45427708 + Missense_Mutation SNP A A G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . DUOX1 NM_017434 exon7 c.A532G p.I178V AGCGCCATCTATG . 44.0 22.0 126.0 0.0 . 125 . . Atlas-SNP DMXL2 23312 hgsc.bcm.edu hg19 15 51828802 51828802 + Silent SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . DMXL2 NM_001174117 exon12 c.A1875T p.A625A AGTGACTGCCCAC . 94.0 69.0 165.0 1.0 . 262 . . Atlas-SNP MYO5A 4644 hgsc.bcm.edu hg19 15 52622690 52622690 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . MYO5A NM_000259 exon34 c.A4340T p.Q1447L TCCATCTGGCCCA . 154.0 101.0 192.0 0.0 . 145 . . Atlas-SNP TRAF7 84231 hgsc.bcm.edu hg19 16 2225896 2225896 + Missense_Mutation SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe TRAF7,NS,meningioma,0,1 TRAF7 NM_032271 exon18 c.A1688T p.Y563F GCGTCTACTCCAT . 217.0 87.0 195.0 1.0 . 158 . . Atlas-SNP DNAH3 55567 hgsc.bcm.edu hg19 16 21061288 21061288 + Silent SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . DNAH3 NM_017539 exon30 c.A4290T p.P1430P CCCAGCTGGACCC . 62.0 25.0 65.0 0.0 . 1142 . . Atlas-SNP RAP1GAP2 23108 hgsc.bcm.edu hg19 17 2929754 2929754 + Missense_Mutation SNP G G A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . RAP1GAP2 NM_015085 exon21 c.G1976A p.S659N GCGACAGTGGGGT . 119.0 98.0 144.0 0.0 . 90 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7579312 7579312 + Silent SNP C C A rs55863639 TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe TP53_ENST00000455263,right_upper_lobe,carcinoma,0,1 TP53 NM_000546 exon4 c.G375T p.T125T ACTGACCGTGCAA . 159.0 124.0 157.0 0.0 . 33396 . . Atlas-SNP KRTAP4-2 85291 hgsc.bcm.edu hg19 17 39334191 39334191 + Missense_Mutation SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . KRTAP4-2 NM_033062 exon1 c.T226A p.C76S GACGGCAGCAGGT . 85.0 66.0 74.0 0.0 . 93 . . Atlas-SNP KRT34 3885 hgsc.bcm.edu hg19 17 39535916 39535916 + Missense_Mutation SNP A A G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . KRT34 NM_021013 exon4 c.T782C p.V261A AGGTCCACAGTGG . 126.0 89.0 188.0 0.0 . 71 . . Atlas-SNP KRT38 8687 hgsc.bcm.edu hg19 17 39597173 39597173 + Missense_Mutation SNP T T C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . KRT38 NM_006771 exon1 c.A1G p.M1V AGGTCATGGTGTT . 153.0 118.0 198.0 0.0 . 63 . . Atlas-SNP CYB561 1534 hgsc.bcm.edu hg19 17 61513455 61513455 + Missense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe CYB561,NS,malignant_melanoma,0,1 CYB561 NM_001915 exon3 c.C261A p.H87Q CAGCCCGTGCAGG . 99.0 58.0 116.0 0.0 . 15 . . Atlas-SNP CCDC47 57003 hgsc.bcm.edu hg19 17 61829358 61829358 + Missense_Mutation SNP C C A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . CCDC47 NM_020198 exon12 c.G1313T p.R438I TCTGCTCTTTTTT . 126.0 75.0 156.0 0.0 . 34 . . Atlas-SNP DOT1L 84444 hgsc.bcm.edu hg19 19 2214500 2214500 + Missense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . DOT1L NM_032482 exon19 c.G1828T p.D610Y CAGCTGGACTGGG . 384.0 18.0 172.0 0.0 . 205 . . Atlas-SNP CACTIN 58509 hgsc.bcm.edu hg19 19 3612206 3612206 + Silent SNP G G A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . . NM_021231 exon10 c.C1992T p.D664D GTCAAAGTCGTAG . 617.0 456.0 274.0 0.0 . . . . Atlas-SNP CATSPERD 257062 hgsc.bcm.edu hg19 19 5772804 5772804 + Missense_Mutation SNP G G A rs369818912 TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . . NM_152784 exon20 c.G1769A p.R590Q GGTGGCGAAAAGA . 209.0 65.0 156.0 0.0 . . . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9065780 9065780 + Silent SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . MUC16 NM_024690 exon3 c.T21666A p.T7222T GGCAACAGTTGTA . 153.0 106.0 270.0 1.0 . 4315 . . Atlas-SNP ZNF729 100287226 hgsc.bcm.edu hg19 19 22498621 22498621 + Missense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ZNF729 NM_001242680 exon4 c.G2402T p.C801F AAGAATGTGGTAA . 4.0 4.0 9.0 0.0 . 78 . . Atlas-SNP ZNF91 7644 hgsc.bcm.edu hg19 19 23544469 23544469 + Missense_Mutation SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ZNF91 NM_003430 exon4 c.G1312A p.E438K CACATTCTTCACA . 51.0 9.0 62.0 0.0 . 349 . . Atlas-SNP PEPD 5184 hgsc.bcm.edu hg19 19 34001941 34001941 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PEPD NM_000285 exon3 c.A322T p.M108L TTCCCATCCAGGT . 88.0 30.0 64.0 0.0 . 48 . . Atlas-SNP ZNF567 163081 hgsc.bcm.edu hg19 19 37210908 37210908 + Nonsense_Mutation SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ZNF567 NM_152603 exon4 c.A1189T p.K397X TGTGGGAAATCCT . 97.0 10.0 39.0 0.0 . 61 . . Atlas-SNP ZNF224 7767 hgsc.bcm.edu hg19 19 44611314 44611314 + Missense_Mutation SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ZNF224 NM_013398 exon6 c.A1001T p.H334L ATAGTCATCGCAT . 175.0 44.0 74.0 0.0 . 70 . . Atlas-SNP BCL3 602 hgsc.bcm.edu hg19 19 45260278 45260278 + Missense_Mutation SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . BCL3 NM_005178 exon4 c.C524T p.P175L AGACACCGCTCCA . 537.0 101.0 210.0 0.0 . 28 . . Atlas-SNP CEACAM18 729767 hgsc.bcm.edu hg19 19 51981868 51981868 + Missense_Mutation SNP C C A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . CEACAM18 NM_001080405 exon2 c.C155A p.P52H AGGGACCCCTCCT . 203.0 32.0 82.0 0.0 . 96 . . Atlas-SNP FAM71E2 284418 hgsc.bcm.edu hg19 19 55870535 55870535 + Silent SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . FAM71E2 NM_001145402 exon9 c.G1701A p.L567L TGTTGGCAACACG . 161.0 25.0 61.0 0.0 . 41 . . Atlas-SNP ZNF135 7694 hgsc.bcm.edu hg19 19 58578450 58578450 + Missense_Mutation SNP G G C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ZNF135 NM_007134 exon4 c.G670C p.D224H AAGCCAGACCTAA . 110.0 34.0 50.0 0.0 . 159 . . Atlas-SNP CBFA2T2 9139 hgsc.bcm.edu hg19 20 32207387 32207387 + Missense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe CBFA2T2_ENST00000342704,colon,carcinoma,0,2 CBFA2T2 NM_005093 exon5 c.G512T p.R171L CCCTTCGTCCTTT . 137.0 62.0 123.0 0.0 . 93 . . Atlas-SNP KCNS1 3787 hgsc.bcm.edu hg19 20 43727336 43727336 + Missense_Mutation SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . KCNS1 NM_002251 exon4 c.G77A p.G26E CTCCTCCCTGCGG . 52.0 18.0 47.0 0.0 . 30 . . Atlas-SNP KCNG1 3755 hgsc.bcm.edu hg19 20 49621256 49621256 + Missense_Mutation SNP T T C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . KCNG1 NM_002237 exon3 c.A862G p.I288V CCTGAATGAGCCG . 256.0 113.0 196.0 0.0 . 86 . . Atlas-SNP FAM217B 63939 hgsc.bcm.edu hg19 20 58519115 58519115 + Silent SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . . NM_022106 exon4 c.T117A p.A39A CACAGCTGTCACC . 189.0 62.0 136.0 0.0 . . . . Atlas-SNP COL9A3 1299 hgsc.bcm.edu hg19 20 61467861 61467861 + Missense_Mutation SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . COL9A3 NM_001853 exon29 c.A1580T p.E527V TCAGGGAGCTGTG . 81.0 26.0 99.0 0.0 . 70 . . Atlas-SNP SIK1 150094 hgsc.bcm.edu hg19 21 44838314 44838314 + Missense_Mutation SNP G G A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . SIK1 NM_173354 exon12 c.C1570T p.P524S TGGCCGGGGTGCC . 55.0 39.0 52.0 0.0 . 65 . . Atlas-SNP DRG1 4733 hgsc.bcm.edu hg19 22 31799026 31799026 + Missense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . DRG1 NM_004147 exon3 c.G178T p.A60S GATGTGGCCAAGA . 277.0 13.0 417.0 0.0 . 28 . . Atlas-SNP PHF5A 84844 hgsc.bcm.edu hg19 22 41863491 41863491 + Silent SNP A A G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PHF5A NM_032758 exon3 c.T204C p.D68D ATAGGCATCAGAG . 141.0 99.0 171.0 0.0 . 6 . . Atlas-SNP CCDC134 79879 hgsc.bcm.edu hg19 22 42209427 42209427 + Missense_Mutation SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . CCDC134 NM_024821 exon5 c.C470T p.P157L AGGGGCCCCACTC . 166.0 128.0 187.0 1.0 . 19 . . Atlas-SNP EGFL6 25975 hgsc.bcm.edu hg19 X 13645318 13645318 + Missense_Mutation SNP G G C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . EGFL6 NM_001167890 exon11 c.G1477C p.E493Q GCATGGGAGAAGA . 126.0 58.0 117.0 0.0 . 111 . . Atlas-SNP RAI2 10742 hgsc.bcm.edu hg19 X 17819079 17819079 + Missense_Mutation SNP C C T rs140631545 bycluster TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . RAI2 NM_001172739 exon3 c.G1052A p.R351Q GATTTCCGGTGGG . 149.0 12.0 132.0 0.0 . 66 . C|1.000;T|0.000 Atlas-SNP MAGEB18 286514 hgsc.bcm.edu hg19 X 26157856 26157856 + Nonsense_Mutation SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . MAGEB18 NM_173699 exon2 c.A754T p.K252X CAGCTAAAGTACC . 251.0 79.0 245.0 0.0 . 67 . . Atlas-SNP BCOR 54880 hgsc.bcm.edu hg19 X 39922123 39922123 + Missense_Mutation SNP T T A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . BCOR NM_001123385 exon9 c.A4049T p.Y1350F TCGGTGTATTTCT . 341.0 118.0 373.0 1.0 . 351 . . Atlas-SNP PPP1R3F 89801 hgsc.bcm.edu hg19 X 49126933 49126933 + Missense_Mutation SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PPP1R3F NM_033215 exon1 c.C601T p.R201C GTCCCGCGCAGCC . 36.0 14.0 28.0 0.0 . 56 . . Atlas-SNP ITIH6 347365 hgsc.bcm.edu hg19 X 54780134 54780134 + Missense_Mutation SNP A A T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . . NM_198510 exon11 c.T3302A p.L1101Q CCATTCAGTGTGA . 168.0 82.0 145.0 0.0 . . . . Atlas-SNP ZMYM3 9203 hgsc.bcm.edu hg19 X 70467743 70467743 + Silent SNP C C T rs200745411 TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ZMYM3 NM_005096 exon12 c.G1989A p.L663L TTTGTACAGCAGC . 204.0 67.0 190.0 0.0 . 137 . . Atlas-SNP TAF1 6872 hgsc.bcm.edu hg19 X 70617219 70617219 + Missense_Mutation SNP G G A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . TAF1 NM_004606 exon23 c.G3583A p.E1195K CGAGATGAAGAGG . 569.0 217.0 520.0 1.0 . 439 . . Atlas-SNP ATP7A 538 hgsc.bcm.edu hg19 X 77244075 77244075 + Missense_Mutation SNP T T C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ATP7A NM_000052 exon3 c.T458C p.L153P GGACACTGGAGAA . 237.0 89.0 199.0 0.0 . 248 . . Atlas-SNP RPS6KA6 27330 hgsc.bcm.edu hg19 X 83389790 83389790 + Missense_Mutation SNP C C T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . RPS6KA6 NM_014496 exon8 c.G646A p.D216N GCATACCTGTTAA . 144.0 47.0 109.0 0.0 . 116 . . Atlas-SNP KLHL4 56062 hgsc.bcm.edu hg19 X 86873049 86873049 + Missense_Mutation SNP C C A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . KLHL4 NM_019117 exon4 c.C842A p.P281H TCCATCCTTCAAA . 343.0 155.0 335.0 0.0 . 263 . . Atlas-SNP SAGE1 55511 hgsc.bcm.edu hg19 X 134989876 134989876 + Missense_Mutation SNP C C A novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . SAGE1 NM_018666 exon10 c.C1035A p.H345Q CACTCACAATGTC . 235.0 97.0 215.0 0.0 . 160 . . Atlas-SNP MAGEC3 139081 hgsc.bcm.edu hg19 X 140983104 140983104 + Missense_Mutation SNP T T C novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . MAGEC3 NM_138702 exon5 c.T959C p.L320P TTGCACTGTGGGA . 337.0 132.0 329.0 1.0 . 228 . . Atlas-SNP CNGA2 1260 hgsc.bcm.edu hg19 X 150912895 150912895 + Missense_Mutation SNP G G T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . CNGA2 NM_005140 exon7 c.G1920T p.M640I CAAGATGAAACAG . 111.0 8.0 124.0 0.0 . 136 . . Atlas-SNP NSDHL 50814 hgsc.bcm.edu hg19 X 152018893 152018893 + Missense_Mutation SNP A A G novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . NSDHL NM_015922 exon3 c.A193G p.N65D GCTGTCAATGTAT . 229.0 102.0 240.0 0.0 . 33 . . Atlas-SNP VEGFC 7424 hgsc.bcm.edu hg19 4 177605084 177605085 + Frame_Shift_Del DEL AT AT - novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 AT AT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . VEGFC NM_005429 exon7 c.1256_1257del p.419_419del . . 103.0 49.0 85.0 0.0 . 94 . . Atlas-INDEL SPATA5 166378 hgsc.bcm.edu hg19 4 123978434 123978445 + Frame_Shift_Del DEL AAAGGGGCAGGT AAAGGGGCAGGT - novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 AAAGGGGCAGGT AAAGGGGCAGGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . SPATA5 NM_145207 exon13 c.2203_2213del p.735_738del . . 146.0 39.0 178.0 0.0 . 62 . . Atlas-Indel,Pindel ARMCX3 51566 hgsc.bcm.edu hg19 X 100880696 100880696 + Frame_Shift_Del DEL A A - novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . ARMCX3 NM_177948 exon5 c.726delT p.A242fs . . 175.0 89.0 160.0 0.0 . 33 . . Atlas-Indel,Pindel PCF11 51585 hgsc.bcm.edu hg19 11 82879771 82879771 + Frame_Shift_Del DEL G G - novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PCF11 NM_015885 exon8 c.2393delT p.M798fs . . 117.0 16.0 80.0 0.0 . 220 . . Atlas-Indel,Pindel PLXDC2 84898 hgsc.bcm.edu hg19 10 20453406 20453406 + Frame_Shift_Del DEL T T - novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PLXDC2 NM_032812 exon7 c.792delC p.V264fs . . 103.0 43.0 86.0 0.0 . 108 . . Atlas-Indel,Pindel SYCP2 10388 hgsc.bcm.edu hg19 20 58467120 58467121 + Frame_Shift_Ins INS - - T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . SYCP2 NM_014258 exon23 c.2289_2290insA p.N763fs . . 195.0 15.0 150.0 0.0 . 204 . . Atlas-Indel,Pindel PTH2R 5746 hgsc.bcm.edu hg19 2 209345847 209345847 + Frame_Shift_Del DEL G G - novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PTH2R NM_005048 exon10 c.1033delT p.W345fs . . 252.0 161.0 209.0 0.0 . 92 . . Atlas-Indel,Pindel PHLDB2 90102 hgsc.bcm.edu hg19 3 111603106 111603106 + Frame_Shift_Del DEL C C - novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PHLDB2 NM_001134437 exon3 c.262delA p.T88fs . . 109.0 66.0 101.0 0.0 . 449 . . Atlas-INDEL VEGFC 7424 hgsc.bcm.edu hg19 4 177605084 177605087 + Frame_Shift_Del DEL ATCA ATCA - novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 ATCA ATCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . VEGFC NM_005429 exon7 c.1254_1257del p.418_419del . . 40.0 40.0 0.0 0.0 . 94 . . Pindel AKR7A3 22977 hgsc.bcm.edu hg19 1 19615114 19615136 + Frame_Shift_Del DEL TGCGGCGCTGGTGGGCGCGTCCA TGCGGCGCTGGTGGGCGCGTCCA - novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 TGCGGCGCTGGTGGGCGCGTCCA TGCGGCGCTGGTGGGCGCGTCCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . AKR7A3 NM_012067 exon1 c.69_91del p.23_31del . . 10.0 10.0 0.0 0.0 . 30 . . Pindel SLC35B3 51000 hgsc.bcm.edu hg19 6 8430331 8430332 + Frame_Shift_Ins INS - - T novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . SLC35B3 NM_001142540 exon3 c.63_64insA p.N21fs . . 10.0 10.0 0.0 0.0 . 38 . . Pindel LRRC61 65999 hgsc.bcm.edu hg19 7 150034607 150034789 + Frame_Shift_Del DEL CTGCCGGCAGTTCCAGGACACACTGCAGGAGTGCTGGGACCTGGACCGCCAGGCCAGCGACAGCCTGGCCCAGGCGGAGCAGGTACTCAGCTCTGCGGGCCCCACCTCTTCCTTCGTCTTCTGAACGTGGCCTATGGCCCAGGACAGCCTGGCAGGTGGCCTCGCTGCCCCCAGTTCCCCTCT CTGCCGGCAGTTCCAGGACACACTGCAGGAGTGCTGGGACCTGGACCGCCAGGCCAGCGACAGCCTGGCCCAGGCGGAGCAGGTACTCAGCTCTGCGGGCCCCACCTCTTCCTTCGTCTTCTGAACGTGGCCTATGGCCCAGGACAGCCTGGCAGGTGGCCTCGCTGCCCCCAGTTCCCCTCT - novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 CTGCCGGCAGTTCCAGGACACACTGCAGGAGTGCTGGGACCTGGACCGCCAGGCCAGCGACAGCCTGGCCCAGGCGGAGCAGGTACTCAGCTCTGCGGGCCCCACCTCTTCCTTCGTCTTCTGAACGTGGCCTATGGCCCAGGACAGCCTGGCAGGTGGCCTCGCTGCCCCCAGTTCCCCTCT CTGCCGGCAGTTCCAGGACACACTGCAGGAGTGCTGGGACCTGGACCGCCAGGCCAGCGACAGCCTGGCCCAGGCGGAGCAGGTACTCAGCTCTGCGGGCCCCACCTCTTCCTTCGTCTTCTGAACGTGGCCTATGGCCCAGGACAGCCTGGCAGGTGGCCTCGCTGCCCCCAGTTCCCCTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . LRRC61 NM_023942 exon2 c.656_1278del p.219_260del . . 23.0 23.0 0.0 0.0 . 17 . . Pindel PHLDB2 90102 hgsc.bcm.edu hg19 3 111603108 111603109 + Frame_Shift_Del DEL CT CT - novel TCGA-CC-5259-01A-31D-A20W-10 TCGA-CC-5259-10A-01D-A20W-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b2e2280d-a133-4737-b089-f4aab5b894a3 17b4c09e-50c8-408e-999f-5b31e55417fe . PHLDB2 NM_001134437 exon3 c.264_265del p.88_89del . . 43.0 43.0 0.0 0.0 . 449 . . Pindel