Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ATP13A2 23400 hgsc.bcm.edu hg19 1 17331929 17331929 + Silent SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . ATP13A2 NM_001141973 exon3 c.G228T p.R76R CCGGAGCCGCAGC . 199.0 35.0 236.0 0.0 . 85 . . Atlas-SNP LAPTM5 7805 hgsc.bcm.edu hg19 1 31208055 31208055 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . LAPTM5 NM_006762 exon7 c.G664T p.V222L CCTCCACCGAGTT . 91.0 12.0 94.0 0.0 . 30 . . Atlas-SNP LCK 3932 hgsc.bcm.edu hg19 1 32741654 32741654 + Silent SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . LCK NM_005356 exon7 c.C621A p.R207R GGTCCGCCATTAC . 158.0 116.0 126.0 0.0 . 124 . . Atlas-SNP LCK 3932 hgsc.bcm.edu hg19 1 32741655 32741655 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . LCK NM_005356 exon7 c.C622A p.H208N GTCCGCCATTACA . 158.0 116.0 124.0 0.0 . 124 . . Atlas-SNP HECTD3 79654 hgsc.bcm.edu hg19 1 45469577 45469577 + Silent SNP C C T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . HECTD3 NM_024602 exon19 c.G2379A p.T793T GCGGCCCGTGACA . 182.0 53.0 170.0 0.0 . 158 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu hg19 1 103478004 103478004 + Missense_Mutation SNP C C G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 COL11A1_ENST00000370096,bladder,carcinoma,0,2 COL11A1 NM_080629 exon14 c.G1630C p.G544R TTGGGCCAGGTGG . 204.0 148.0 139.0 0.0 . 972 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152080252 152080252 + Missense_Mutation SNP G G C novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . TCHH NM_007113 exon3 c.C5441G p.P1814R TGTTGGGGGCGCA . 86.0 10.0 89.0 0.0 . 275 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152080253 152080253 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . TCHH NM_007113 exon3 c.C5440A p.P1814T GTTGGGGGCGCAG . 85.0 10.0 88.0 0.0 . 275 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152080269 152080269 + Silent SNP T T C novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 TCHH,bladder,carcinoma,0,3 TCHH NM_007113 exon3 c.A5424G p.E1808E CTGTTCTTCCCTC . 80.0 8.0 96.0 0.0 . 275 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152080284 152080284 + Silent SNP T T G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 TCHH,bladder,carcinoma,0,1 TCHH NM_007113 exon3 c.A5409C p.L1803L CTGGCGTAGCTGT . 79.0 6.0 93.0 0.0 . 275 . . Atlas-SNP SEC16B 89866 hgsc.bcm.edu hg19 1 177934193 177934193 + Silent SNP C C T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . SEC16B NM_033127 exon4 c.G522A p.E174E GTGGGTCTCACTA . 114.0 85.0 109.0 0.0 . 92 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237850763 237850763 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . RYR2 NM_001035 exon63 c.G9026T p.C3009F TATTCTGCAAACT . 93.0 12.0 111.0 0.0 . 1273 . . Atlas-SNP SDCCAG8 10806 hgsc.bcm.edu hg19 1 243437866 243437866 + Missense_Mutation SNP A A G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . SDCCAG8 NM_006642 exon4 c.A328G p.T110A GAGGAAACCAATA . 146.0 22.0 160.0 0.0 . 73 . . Atlas-SNP OR2T27 403239 hgsc.bcm.edu hg19 1 248813752 248813752 + Missense_Mutation SNP A A G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . OR2T27 NM_001001824 exon1 c.T434C p.V145A GCCGCCACAATCA . 268.0 101.0 427.0 0.0 . 52 . . Atlas-SNP GCKR 2646 hgsc.bcm.edu hg19 2 27741789 27741789 + Silent SNP G G T rs367961156 alternate_allele TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . GCKR NM_001486 exon17 c.G1557T p.A519A GCGGGCGCTGGCC . 62.0 21.0 85.0 0.0 . 73 . . Atlas-SNP LTBP1 4052 hgsc.bcm.edu hg19 2 33585803 33585803 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . LTBP1 NM_206943 exon27 c.G4140T p.W1380C GGGATGGGGAGAT . 136.0 43.0 134.0 0.0 . 317 . . Atlas-SNP SOS1 6654 hgsc.bcm.edu hg19 2 39222434 39222434 + Missense_Mutation SNP T T C novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . SOS1 NM_005633 exon20 c.A3176G p.E1059G CTTGGCTCCTGCT . 138.0 70.0 144.0 0.0 . 134 . . Atlas-SNP NRXN1 9378 hgsc.bcm.edu hg19 2 50463974 50463974 + Silent SNP G G T rs199546979 alternate_allele TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 NRXN1_ENST00000536085,NS,carcinoma,0,3 NRXN1 NM_001135659 exon19 c.C3619A p.R1207R CCACTCGCACCAA . 153.0 66.0 147.0 0.0 . 1118 . . Atlas-SNP EFEMP1 2202 hgsc.bcm.edu hg19 2 56144961 56144961 + Missense_Mutation SNP A A G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . EFEMP1 NM_001039349 exon4 c.T356C p.V119A CTGGCCACAAAAC . 76.0 35.0 75.0 0.0 . 81 . . Atlas-SNP ASTL 431705 hgsc.bcm.edu hg19 2 96798324 96798324 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . ASTL NM_001002036 exon6 c.G592T p.D198Y CCCGGTCGGCCCG . 211.0 101.0 267.0 0.0 . 59 . . Atlas-SNP TGFBRAP1 9392 hgsc.bcm.edu hg19 2 105886085 105886085 + Missense_Mutation SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . TGFBRAP1 NM_004257 exon11 c.C2050T p.H684Y GGATATGCAGCGC . 84.0 31.0 98.0 0.0 . 70 . . Atlas-SNP POTEF 728378 hgsc.bcm.edu hg19 2 130832599 130832599 + Missense_Mutation SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 POTEF,trunk,malignant_melanoma,+1,1 POTEF NM_001099771 exon17 c.C2446T p.R816C TCTCGCGGTTGGC . 446.0 225.0 526.0 2.0 . 140 . . Atlas-SNP LCT 3938 hgsc.bcm.edu hg19 2 136579639 136579639 + Missense_Mutation SNP C C T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . LCT NM_002299 exon5 c.G937A p.G313R CAAACCCAATGGT . 76.0 16.0 77.0 0.0 . 309 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179463972 179463972 + Silent SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . TTN NM_001267550 exon290 c.C56548T p.L18850L CTTCTAGCAATTT . 112.0 51.0 123.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179665290 179665290 + Silent SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 TTN_ENST00000360870,NS,lymphoid_neoplasm,0,18 TTN NM_001267550 exon4 c.C415A p.R139R CATCCCGGTAGAA . 132.0 51.0 108.0 0.0 . 18412 . . Atlas-SNP MYO1B 4430 hgsc.bcm.edu hg19 2 192273885 192273885 + Missense_Mutation SNP G G C novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . MYO1B NM_001161819 exon26 c.G2747C p.R916T TAAAAAGGATTTT . 100.0 49.0 85.0 0.0 . 160 . . Atlas-SNP CTLA4 1493 hgsc.bcm.edu hg19 2 204732726 204732726 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . CTLA4 NM_005214 exon1 c.C61A p.P21T ACCTGGCCCTGCA . 91.0 38.0 113.0 0.0 . 24 . . Atlas-SNP PARD3B 117583 hgsc.bcm.edu hg19 2 205829899 205829899 + Missense_Mutation SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . PARD3B NM_205863 exon3 c.G247A p.E83K GAACAAGAACCAC . 72.0 16.0 67.0 0.0 . 314 . . Atlas-SNP PIKFYVE 200576 hgsc.bcm.edu hg19 2 209141531 209141531 + Missense_Mutation SNP G G C novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . PIKFYVE NM_015040 exon4 c.G418C p.E140Q CTCAAGGAAATCA . 125.0 65.0 109.0 0.0 . 223 . . Atlas-SNP PECR 55825 hgsc.bcm.edu hg19 2 216946462 216946462 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . PECR NM_018441 exon1 c.G3T p.M1I GGAGGCCATCCCT . 81.0 45.0 111.0 0.0 . 22 . . Atlas-SNP SLC4A3 6508 hgsc.bcm.edu hg19 2 220500114 220500114 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . SLC4A3 NM_201574 exon13 c.G1949T p.R650L TGCTGCGCTCCGT . 239.0 114.0 345.0 0.0 . 144 . . Atlas-SNP PRSS45 377047 hgsc.bcm.edu hg19 3 46784019 46784019 + Missense_Mutation SNP C C T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . PRSS45 NM_199183 exon4 c.G508A p.G170R ACACCCCAGCCAG . 137.0 59.0 159.0 0.0 . 12 . . Atlas-SNP ERC2 26059 hgsc.bcm.edu hg19 3 55717878 55717878 + Missense_Mutation SNP C C G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . ERC2 NM_015576 exon16 c.G2851C p.E951Q TGCCCTCCTCGTC . 87.0 27.0 153.0 0.0 . 221 . . Atlas-SNP LMOD3 56203 hgsc.bcm.edu hg19 3 69167886 69167886 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . LMOD3 NM_198271 exon2 c.C1620A p.N540K AATGTCGTTTAGC . 137.0 46.0 197.0 0.0 . 92 . . Atlas-SNP ACAD11 84129 hgsc.bcm.edu hg19 3 132378583 132378583 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 ACAD11,NS,carcinoma,0,1 ACAD11 NM_032169 exon1 c.G13T p.A5S CAGTAGCACCTGG . 72.0 34.0 125.0 0.0 . 78 . . Atlas-SNP GPR149 344758 hgsc.bcm.edu hg19 3 154146874 154146874 + Silent SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . GPR149 NM_001038705 exon1 c.C531T p.R177R GGGCGTGCGCACG . 33.0 19.0 54.0 0.0 . 134 . . Atlas-SNP LRCH3 84859 hgsc.bcm.edu hg19 3 197562626 197562626 + Missense_Mutation SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . LRCH3 NM_032773 exon9 c.G1184A p.G395E CCAAGGGACCAGA . 88.0 33.0 119.0 0.0 . 96 . . Atlas-SNP TLR1 7096 hgsc.bcm.edu hg19 4 38798659 38798659 + Silent SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . TLR1 NM_003263 exon4 c.C1794T p.T598T GAGGGAGGTCACA . 128.0 75.0 205.0 1.0 . 70 . . Atlas-SNP MGARP 84709 hgsc.bcm.edu hg19 4 140187811 140187811 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . . NM_032623 exon4 c.G665T p.G222V TCATCTCCAGCAG . 26.0 18.0 25.0 0.0 . . . . Atlas-SNP FGA 2243 hgsc.bcm.edu hg19 4 155505651 155505651 + Missense_Mutation SNP G G C rs376434823 alternate_allele TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . FGA NM_000508 exon6 c.C2226G p.F742L TACCCGGAAGTGA . 112.0 82.0 162.0 0.0 . 179 . . Atlas-SNP DDX60L 91351 hgsc.bcm.edu hg19 4 169305825 169305825 + Missense_Mutation SNP G G C novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . DDX60L NM_001012967 exon30 c.C4054G p.L1352V GGACCAGGGTTAT . 354.0 173.0 328.0 0.0 . 116 . . Atlas-SNP SEMA5A 9037 hgsc.bcm.edu hg19 5 9066573 9066573 + Silent SNP C C T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . SEMA5A NM_003966 exon17 c.G2259A p.R753R ACAGTACCGCATT . 157.0 50.0 181.0 0.0 . 236 . . Atlas-SNP FAM105A 54491 hgsc.bcm.edu hg19 5 14601219 14601219 + Silent SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . FAM105A NM_019018 exon2 c.G210T p.G70G TTCAGGGCACAAG . 56.0 24.0 63.0 0.0 . 32 . . Atlas-SNP EGFLAM 133584 hgsc.bcm.edu hg19 5 38412649 38412649 + Nonsense_Mutation SNP A A T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . EGFLAM NM_001205301 exon11 c.A1393T p.K465X GAGACCAAAATCA . 55.0 4.0 85.0 0.0 . 302 . . Atlas-SNP PCDH12 51294 hgsc.bcm.edu hg19 5 141337154 141337154 + Missense_Mutation SNP G G C novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . PCDH12 NM_016580 exon1 c.C263G p.T88R CTGCCTGTGCTGA . 194.0 102.0 236.0 0.0 . 133 . . Atlas-SNP HNRNPH1 3187 hgsc.bcm.edu hg19 5 179043937 179043937 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . HNRNPH1 NM_001257293 exon11 c.C1140A p.F380L ATTCAAGAAGAGT . 173.0 64.0 269.0 0.0 . 62 . . Atlas-SNP ATXN1 6310 hgsc.bcm.edu hg19 6 16327490 16327490 + Missense_Mutation SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . ATXN1 NM_001128164 exon7 c.C1052T p.S351L GGAACCGACTTGC . 92.0 8.0 97.0 0.0 . 117 . . Atlas-SNP ZDHHC4 55146 hgsc.bcm.edu hg19 7 6620253 6620253 + Missense_Mutation SNP A A G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . ZDHHC4 NM_018106 exon3 c.A61G p.I21V GTTCTTATCTGCG . 168.0 88.0 237.0 1.0 . 36 . . Atlas-SNP CRHR2 1395 hgsc.bcm.edu hg19 7 30721587 30721587 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . CRHR2 NM_001202475 exon3 c.C254A p.A85D ACGAGGGCTCCGG . 56.0 10.0 102.0 0.0 . 104 . . Atlas-SNP NEUROD6 63974 hgsc.bcm.edu hg19 7 31378831 31378831 + Missense_Mutation SNP A A T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . NEUROD6 NM_022728 exon2 c.T52A p.C18S TTCTGCACATCTG . 28.0 18.0 26.0 0.0 . 84 . . Atlas-SNP C7orf25 79020 hgsc.bcm.edu hg19 7 42949411 42949411 + Silent SNP C C T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . C7orf25 NM_001099858 exon2 c.G1263A p.G421G TCCCGTCCCAAAA . 134.0 81.0 126.0 0.0 . 36 . . Atlas-SNP LRCH4 4034 hgsc.bcm.edu hg19 7 100174773 100174773 + Silent SNP A A G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . LRCH4 NM_002319 exon12 c.T1300C p.L434L GCTTCAAGAGGCT . 67.0 21.0 133.0 0.0 . 53 . . Atlas-SNP CTTNBP2 83992 hgsc.bcm.edu hg19 7 117351762 117351762 + Silent SNP T T A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . CTTNBP2 NM_033427 exon23 c.A4821T p.S1607S AACTCTTGAAACA . 42.0 23.0 40.0 0.0 . 200 . . Atlas-SNP CADPS2 93664 hgsc.bcm.edu hg19 7 122303420 122303420 + Silent SNP T T C novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . CADPS2 NM_001167940 exon3 c.A657G p.K219K TGGCTGTTTGCAC . 98.0 61.0 90.0 0.0 . 116 . . Atlas-SNP SND1 27044 hgsc.bcm.edu hg19 7 127721412 127721412 + Missense_Mutation SNP G G C novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . SND1 NM_014390 exon18 c.G1969C p.V657L ATGCAGGTCTGGG . 92.0 53.0 125.0 0.0 . 104 . . Atlas-SNP METTL2B 55798 hgsc.bcm.edu hg19 7 128133954 128133954 + Missense_Mutation SNP A A G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . METTL2B NM_018396 exon6 c.A766G p.I256V CTTGATATTATCA . 160.0 103.0 174.0 0.0 . 34 . . Atlas-SNP HIPK2 28996 hgsc.bcm.edu hg19 7 139285298 139285298 + Missense_Mutation SNP T T A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . HIPK2 NM_022740 exon11 c.A2300T p.Q767L GCAGGCTGCTGCA . 166.0 86.0 213.0 0.0 . 192 . . Atlas-SNP TBXAS1 6916 hgsc.bcm.edu hg19 7 139655333 139655333 + Silent SNP T T A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . TBXAS1 NM_001166253 exon8 c.T756A p.P252P GGCCCCTGAGGAT . 45.0 9.0 61.0 0.0 . 121 . . Atlas-SNP TUSC3 7991 hgsc.bcm.edu hg19 8 15397946 15397946 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . TUSC3 NM_178234 exon1 c.G7T p.A3S ATGGGGGCCCGGG . 17.0 8.0 40.0 0.0 . 98 . . Atlas-SNP AZIN1 51582 hgsc.bcm.edu hg19 8 103842142 103842142 + Missense_Mutation SNP T T A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . AZIN1 NM_015878 exon11 c.A927T p.E309D GGCTGGTTCATCA . 129.0 88.0 94.0 0.0 . 26 . . Atlas-SNP TRPM3 80036 hgsc.bcm.edu hg19 9 73736204 73736204 + Missense_Mutation SNP A A T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . TRPM3 NM_001007471 exon1 c.T67A p.W23R TCCACCAGGAAAA . 68.0 36.0 88.0 0.0 . 700 . . Atlas-SNP ZFP37 7539 hgsc.bcm.edu hg19 9 115812084 115812084 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . ZFP37 NM_003408 exon2 c.C201A p.N67K GGCTTGGTTGCAG . 121.0 70.0 156.0 0.0 . 93 . . Atlas-SNP OR1B1 347169 hgsc.bcm.edu hg19 9 125391806 125391806 + Silent SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . OR1B1 NM_001004450 exon1 c.C9T p.S3S GGCAAAGCTCATC . 94.0 40.0 94.0 0.0 . 48 . . Atlas-SNP NTNG2 84628 hgsc.bcm.edu hg19 9 135117276 135117276 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . NTNG2 NM_032536 exon8 c.C1371A p.D457E GTGCGACGACGAC . 14.0 5.0 36.0 0.0 . 66 . . Atlas-SNP TPRN 286262 hgsc.bcm.edu hg19 9 140093451 140093451 + Silent SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . TPRN NM_001128228 exon1 c.C1713T p.S571S TCTTGAGGAGCCA . 56.0 12.0 115.0 0.0 . 28 . . Atlas-SNP SYT15 83849 hgsc.bcm.edu hg19 10 46965864 46965864 + Missense_Mutation SNP G G T rs202146218 bycluster;alternate_allele TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . SYT15 NM_031912 exon5 c.C673A p.Q225K CCCTCTGGGTGAT . 90.0 31.0 142.0 0.0 . 165 . . Atlas-SNP CHST3 9469 hgsc.bcm.edu hg19 10 73765630 73765630 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . CHST3 NM_004273 exon2 c.C30A p.D10E CCAGGACTGCCGG . 62.0 47.0 95.0 0.0 . 36 . . Atlas-SNP LOXL4 84171 hgsc.bcm.edu hg19 10 100021841 100021841 + Missense_Mutation SNP C C T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . LOXL4 NM_032211 exon3 c.G407A p.R136H CGATGGCGCCGGG . 51.0 11.0 75.0 0.0 . 60 . . Atlas-SNP NOLC1 9221 hgsc.bcm.edu hg19 10 103921354 103921354 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . NOLC1 NM_004741 exon11 c.G1783T p.A595S AAGGAGGCAGAGA . 45.0 33.0 99.0 0.0 . 61 . . Atlas-SNP SFXN2 118980 hgsc.bcm.edu hg19 10 104489489 104489489 + Missense_Mutation SNP C C T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . SFXN2 NM_178858 exon6 c.C517T p.P173S GCGCCGCCCTTGG . 25.0 21.0 33.0 0.0 . 40 . . Atlas-SNP AFAP1L2 84632 hgsc.bcm.edu hg19 10 116061116 116061116 + Silent SNP A A C novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . AFAP1L2 NM_032550 exon13 c.T1539G p.A513A TACCGCAGCTGTG . 34.0 27.0 74.0 0.0 . 90 . . Atlas-SNP MMP21 118856 hgsc.bcm.edu hg19 10 127455372 127455372 + Silent SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . MMP21 NM_147191 exon7 c.C1569T p.G523G TGCATTGCCTTTG . 57.0 42.0 97.0 0.0 . 46 . . Atlas-SNP TH 7054 hgsc.bcm.edu hg19 11 2189846 2189846 + Missense_Mutation SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . TH NM_199292 exon4 c.C455T p.P152L GCTCGCGGCCTCT . 18.0 12.0 33.0 0.0 . 43 . . Atlas-SNP OR2D3 120775 hgsc.bcm.edu hg19 11 6943217 6943217 + Missense_Mutation SNP A A T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 OR2D3,NS,carcinoma,0,1 OR2D3 NM_001004684 exon1 c.A985T p.R329W TCTCATAGGCAGT . 48.0 20.0 54.0 0.0 . 51 . . Atlas-SNP RAG1 5896 hgsc.bcm.edu hg19 11 36595488 36595488 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . RAG1 NM_000448 exon2 c.G634T p.D212Y TCCTGTGACATCT . 74.0 17.0 81.0 0.0 . 151 . . Atlas-SNP TMEM132A 54972 hgsc.bcm.edu hg19 11 60698051 60698051 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . TMEM132A NM_178031 exon5 c.G936T p.K312N TGCCAAGCTGGAC . 42.0 11.0 80.0 0.0 . 135 . . Atlas-SNP DDB1 1642 hgsc.bcm.edu hg19 11 61096943 61096943 + Silent SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . DDB1 NM_001923 exon4 c.C441T p.R147R ATTATCGCGATCT . 82.0 5.0 120.0 0.0 . 100 . . Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92577730 92577730 + Missense_Mutation SNP A A G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . FAT3 NM_001008781 exon18 c.A11197G p.M3733V AATATCATGCGCA . 157.0 71.0 234.0 0.0 . 1822 . . Atlas-SNP DDI1 414301 hgsc.bcm.edu hg19 11 103908038 103908038 + Missense_Mutation SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 DDI1_ENST00000302259,caecum,carcinoma,0,2 DDI1 NM_001001711 exon1 c.G488A p.R163H AGGAACGCAACCC . 47.0 11.0 78.0 0.0 . 222 . . Atlas-SNP MLL 4297 hgsc.bcm.edu hg19 11 118376454 118376454 + Nonsense_Mutation SNP C C T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 MLL_ENST00000534358,bladder,carcinoma,0,2 MLL NM_001197104 exon27 c.C9847T p.R3283X TCTCACCGAACTG . 65.0 29.0 71.0 0.0 . 548 . . Atlas-SNP ROBO4 54538 hgsc.bcm.edu hg19 11 124765401 124765401 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . ROBO4 NM_019055 exon6 c.G988T p.A330S CTCGAGCCCGGCC . 43.0 21.0 34.0 0.0 . 130 . . Atlas-SNP LRRK2 120892 hgsc.bcm.edu hg19 12 40657644 40657644 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . LRRK2 NM_198578 exon14 c.G1597T p.V533F AATATGGTTAAAA . 101.0 21.0 140.0 0.0 . 763 . . Atlas-SNP CCNT1 904 hgsc.bcm.edu hg19 12 49089809 49089809 + Missense_Mutation SNP C C A rs35965578 byfrequency;alternate_allele TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . CCNT1 NM_001240 exon7 c.G679T p.A227S CAGTGGCGTCAAC . 94.0 24.0 125.0 0.0 . 55 . C|0.500;G|0.500 Atlas-SNP PDX1 3651 hgsc.bcm.edu hg19 13 28498513 28498513 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . PDX1 NM_000209 exon2 c.G527T p.R176L CGCGCCGGGTGGA . 45.0 38.0 161.0 1.0 . 7 . . Atlas-SNP HNRNPC 3183 hgsc.bcm.edu hg19 14 21679444 21679444 + Nonsense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . HNRNPC NM_031314 exon9 c.G859T p.E287X CTTTTTCATCATC . 75.0 30.0 129.0 0.0 . 31 . . Atlas-SNP LTBP2 4053 hgsc.bcm.edu hg19 14 75016623 75016623 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . LTBP2 NM_000428 exon8 c.G1732T p.G578C CACTGCCACAGCA . 79.0 31.0 154.0 0.0 . 158 . . Atlas-SNP MLH3 27030 hgsc.bcm.edu hg19 14 75515470 75515470 + Missense_Mutation SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . MLH3 NM_014381 exon2 c.C889T p.R297W TAGACCGGTGCCG . 58.0 16.0 109.0 0.0 . 200 . . Atlas-SNP NPAP1 23742 hgsc.bcm.edu hg19 15 24921322 24921322 + Missense_Mutation SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 C15orf2,colon,carcinoma,0,1 . NM_018958 exon1 c.G308A p.R103Q CTGCTCGGAACCC . 24.0 11.0 39.0 0.0 . . . . Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28518063 28518063 + Silent SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . HERC2 NM_004667 exon8 c.G888T p.L296L CACAGCCAGCTCC . 24.0 11.0 40.0 0.0 . 501 . . Atlas-SNP RTF1 23168 hgsc.bcm.edu hg19 15 41763423 41763423 + Missense_Mutation SNP A A G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . RTF1 NM_015138 exon8 c.A1079G p.N360S AATTGAATCGGGT . 72.0 16.0 110.0 0.0 . 76 . . Atlas-SNP DUOXA1 90527 hgsc.bcm.edu hg19 15 45411339 45411339 + Missense_Mutation SNP C C T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . DUOXA1 NM_001276266 exon6 c.G997A p.E333K GTGCCTCCTTACA . 89.0 23.0 101.0 0.0 . 32 . . Atlas-SNP FBN1 2200 hgsc.bcm.edu hg19 15 48829964 48829964 + Missense_Mutation SNP T T A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . FBN1 NM_000138 exon7 c.A580T p.M194L GGCACATCTGGTT . 72.0 20.0 71.0 0.0 . 310 . . Atlas-SNP LYSMD4 145748 hgsc.bcm.edu hg19 15 100269392 100269392 + Missense_Mutation SNP A A T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . LYSMD4 NM_152449 exon6 c.T830A p.V277D ACTGCAACTGCTA . 138.0 56.0 181.0 0.0 . 21 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577534 7577534 + Missense_Mutation SNP C C A rs28934571 bycluster TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 TP53_ENST00000455263,right_lower_lobe,carcinoma,-2,1 TP53 NM_000546 exon7 c.G747T p.R249S GATGGGCCTCCGG . 89.0 69.0 249.0 2.0 . 33396 . . Atlas-SNP MYH10 4628 hgsc.bcm.edu hg19 17 8390877 8390877 + Silent SNP C C T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . MYH10 NM_001256012 exon36 c.G4920A p.R1640R CTGTTTCCTCTCA . 41.0 29.0 58.0 0.0 . 148 . . Atlas-SNP RHBDL3 162494 hgsc.bcm.edu hg19 17 30616004 30616004 + Missense_Mutation SNP C C T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . RHBDL3 NM_138328 exon4 c.C488T p.P163L CCCCACCCTGGTT . 194.0 83.0 359.0 0.0 . 49 . . Atlas-SNP NKIRAS2 28511 hgsc.bcm.edu hg19 17 40174597 40174597 + Missense_Mutation SNP A A G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . NKIRAS2 NM_001144927 exon3 c.A275G p.E92G GCAGAGAGTCTTT . 45.0 23.0 91.0 0.0 . 15 . . Atlas-SNP CRHR1 1394 hgsc.bcm.edu hg19 17 43861914 43861914 + Nonsense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . CRHR1 NM_001145148 exon1 c.G4T p.G2X AGGATGGGAGGGC . 31.0 15.0 74.0 0.0 . 48 . . Atlas-SNP ITGA3 3675 hgsc.bcm.edu hg19 17 48149396 48149396 + Nonsense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . ITGA3 NM_005501 exon7 c.G1006T p.E336X AGGAAAGAGGAAG . 155.0 68.0 213.0 0.0 . 128 . . Atlas-SNP MED13 9969 hgsc.bcm.edu hg19 17 60024306 60024306 + Missense_Mutation SNP C C G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . MED13 NM_005121 exon29 c.G6364C p.D2122H TTGAGTCAAGTGG . 168.0 27.0 125.0 0.0 . 181 . . Atlas-SNP USH1G 124590 hgsc.bcm.edu hg19 17 72916210 72916210 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . USH1G NM_173477 exon2 c.G721T p.A241S AGCGGGCGCTCTT . 39.0 28.0 32.0 0.0 . 40 . . Atlas-SNP LRRC45 201255 hgsc.bcm.edu hg19 17 79988573 79988573 + Missense_Mutation SNP G G C novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . LRRC45 NM_144999 exon17 c.G1905C p.E635D GGCGGAGATCGCC . 74.0 49.0 72.0 0.0 . 22 . . Atlas-SNP DCC 1630 hgsc.bcm.edu hg19 18 50923774 50923774 + Missense_Mutation SNP A A T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . DCC NM_005215 exon18 c.A2785T p.S929C AGGTCCAGTACTT . 73.0 20.0 87.0 0.0 . 360 . . Atlas-SNP SMARCA4 6597 hgsc.bcm.edu hg19 19 11096863 11096863 + Splice_Site SNP A A T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . SMARCA4 NM_003072 exon4 c.356-2A>T . CTCTGCAGGTTAC . 34.0 25.0 87.0 0.0 . 502 . . Atlas-SNP PLD3 23646 hgsc.bcm.edu hg19 19 40872522 40872522 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . PLD3 NM_012268 exon4 c.G33T p.K11N GCTGAAGGTGCCT . 44.0 25.0 69.0 0.0 . 71 . . Atlas-SNP SRRM5 100170229 hgsc.bcm.edu hg19 19 44116304 44116304 + Missense_Mutation SNP A A G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . SRRM5 NM_001145641 exon1 c.A31G p.S11G AAGCCCAGTATGT . 189.0 67.0 288.0 0.0 . 38 . . Atlas-SNP ZNF223 7766 hgsc.bcm.edu hg19 19 44571032 44571032 + Missense_Mutation SNP A A G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . ZNF223 NM_013361 exon5 c.A1051G p.K351E TGTGGGAAGAGCT . 96.0 36.0 124.0 0.0 . 61 . . Atlas-SNP VASP 7408 hgsc.bcm.edu hg19 19 46021343 46021343 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . VASP NM_003370 exon3 c.G334T p.A112S CTAGAGGCGTTGG . 68.0 26.0 148.0 0.0 . 26 . . Atlas-SNP PPP2R1A 5518 hgsc.bcm.edu hg19 19 52714742 52714742 + Missense_Mutation SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . PPP2R1A NM_014225 exon4 c.G500A p.R167Q AACTTCGACAGTG . 43.0 16.0 36.0 0.0 . 187 . . Atlas-SNP ZNF534 147658 hgsc.bcm.edu hg19 19 52941617 52941617 + Nonsense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . ZNF534 NM_001143939 exon4 c.G943T p.E315X TGTAGTGAATGTG . 87.0 28.0 122.0 0.0 . 105 . . Atlas-SNP SOGA1 140710 hgsc.bcm.edu hg19 20 35437004 35437004 + Missense_Mutation SNP A A G novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . SOGA1 NM_080627 exon8 c.T2726C p.F909S AGCAGGAAGTTGT . 51.0 20.0 69.0 0.0 . 136 . . Atlas-SNP WFDC3 140686 hgsc.bcm.edu hg19 20 44403077 44403077 + Missense_Mutation SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 WFDC3,NS,carcinoma,0,1 WFDC3 NM_080614 exon7 c.C686T p.P229L GGCACCGGGATCT . 53.0 12.0 70.0 0.0 . 18 . . Atlas-SNP PREX1 57580 hgsc.bcm.edu hg19 20 47342858 47342858 + Missense_Mutation SNP T T A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . PREX1 NM_020820 exon5 c.A590T p.Q197L ATCCTCTGGATCG . 128.0 57.0 187.0 0.0 . 441 . . Atlas-SNP TSHZ2 128553 hgsc.bcm.edu hg19 20 51872915 51872915 + Missense_Mutation SNP G G T rs201353411 bycluster TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 TSHZ2,NS,carcinoma,0,1 TSHZ2 NM_173485 exon2 c.G2918T p.R973L TCTCCCGGGTATC . 126.0 43.0 130.0 1.0 . 209 . . Atlas-SNP NPEPL1 79716 hgsc.bcm.edu hg19 20 57288476 57288476 + Silent SNP G G A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . NPEPL1 NM_024663 exon9 c.G1002A p.K334K CCCCAGGACGGTG . 125.0 53.0 159.0 0.0 . 36 . . Atlas-SNP ADAMTS1 9510 hgsc.bcm.edu hg19 21 28217002 28217002 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . ADAMTS1 NM_006988 exon1 c.C272A p.P91H CTGTCGGGCCGCA . 56.0 15.0 82.0 0.0 . 131 . . Atlas-SNP SYNJ1 8867 hgsc.bcm.edu hg19 21 34100328 34100328 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . SYNJ1 NM_203446 exon1 c.G24T p.W8C TCCGCTCCAGCAG . 11.0 10.0 12.0 0.0 . 253 . . Atlas-SNP DIP2A 23181 hgsc.bcm.edu hg19 21 47952072 47952072 + Silent SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . DIP2A NM_206891 exon10 c.G1227T p.V409V CCCTGTGATGTTC . 124.0 76.0 153.0 0.0 . 332 . . Atlas-SNP NEFH 4744 hgsc.bcm.edu hg19 22 29886676 29886676 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . NEFH NM_021076 exon4 c.C3047A p.A1016D ACAAGGCCGCCAA . 65.0 39.0 80.0 0.0 . 178 . . Atlas-SNP CDC42EP1 11135 hgsc.bcm.edu hg19 22 37964608 37964608 + Missense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . CDC42EP1 NM_152243 exon3 c.G957T p.R319S CGGCAGGCACTGG . 71.0 27.0 132.0 0.0 . 53 . . Atlas-SNP TAF1 6872 hgsc.bcm.edu hg19 X 70674056 70674056 + Missense_Mutation SNP T T C novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . TAF1 NM_004606 exon33 c.T4850C p.I1617T AGGAGATTGTGAA . 78.0 66.0 104.0 0.0 . 439 . . Atlas-SNP USP26 83844 hgsc.bcm.edu hg19 X 132159790 132159790 + Missense_Mutation SNP C C A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . USP26 NM_031907 exon1 c.G2459T p.G820V TGATCTCCCTTAT . 52.0 11.0 16.0 0.0 . 135 . . Atlas-SNP USP9Y 8287 hgsc.bcm.edu hg19 Y 14951877 14951877 + Nonsense_Mutation SNP G G T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . USP9Y NM_004654 exon36 c.G5425T p.E1809X GAAAGAGAATGTG . 35.0 28.0 82.0 0.0 . 49 . . Atlas-SNP ST5 6764 hgsc.bcm.edu hg19 11 8752447 8752447 + Frame_Shift_Del DEL G G - novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . ST5 NM_213618 exon3 c.391delT p.C131fs . . 22.0 12.0 47.0 0.0 . 85 . . Atlas-INDEL COL15A1 1306 hgsc.bcm.edu hg19 9 101798606 101798607 + Frame_Shift_Ins INS - - T novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . COL15A1 NM_001855 exon21 c.2337_2338insT p.G779fs . . 49.0 11.0 96.0 0.0 . 211 . . Atlas-INDEL RGPD3 653489 hgsc.bcm.edu hg19 2 107051593 107051593 + Frame_Shift_Del DEL C C - novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . RGPD3 NM_001144013 exon13 c.1825delA p.K609fs . . 479.0 82.0 602.0 0.0 . 316 . . Atlas-INDEL ALB 213 hgsc.bcm.edu hg19 4 74272392 74272393 + Frame_Shift_Ins INS - - ATCA novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . ALB NM_000477 exon3 c.184_185insATCA p.D62fs . . 45.0 29.0 71.0 0.0 . 132 . . Atlas-Indel,Pindel RANBP2 5903 hgsc.bcm.edu hg19 2 109369517 109369517 + Frame_Shift_Del DEL A A - novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . RANBP2 NM_006267 exon13 c.1818delG p.W606X . . 511.0 114.0 641.0 0.0 . 488 . . Atlas-INDEL KCNJ4 3761 hgsc.bcm.edu hg19 22 38823369 38823377 + In_Frame_Del DEL ACACCAGGA ACACCAGGA - novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 ACACCAGGA ACACCAGGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . KCNJ4 NM_004981 exon2 c.762_770del p.254_257del . . 145.0 28.0 182.0 0.0 . 74 . . Atlas-Indel,Pindel AXIN1 8312 hgsc.bcm.edu hg19 16 348096 348097 + Frame_Shift_Ins INS - - A novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . AXIN1 NM_003502 exon6 c.1410_1411insT p.I470fs . . 21.0 14.0 67.0 0.0 . 290 . . Atlas-Indel,Pindel HNRNPUL1 11100 hgsc.bcm.edu hg19 19 41807519 41807519 + Frame_Shift_Del DEL C C - novel TCGA-CC-A5UE-01A-11D-A28X-10 TCGA-CC-A5UE-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 02ae91b2-04c4-42aa-a17e-acc1cd567538 94ab9c19-5161-421e-8816-59e46a6af947 . HNRNPUL1 NM_007040 exon11 c.1596delT p.C532fs . . 67.0 28.0 103.0 0.0 . 73 . . Pindel