Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CROCC	9696	hgsc.bcm.edu	hg19	1	17273389	17273389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CROCC	NM_014675	exon17	c.G2417T	p.G806V	TGGAGGGCTCCCT	.	203.0	40.0	226.0	0.0	.	185	.	.	Atlas-SNP
TMEM59	9528	hgsc.bcm.edu	hg19	1	54506502	54506502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	TMEM59	NM_004872	exon6	c.A634G	p.M212V	TTCTCATTTGCAG	.	210.0	35.0	210.0	0.0	.	28	.	.	Atlas-SNP
LRRIQ3	127255	hgsc.bcm.edu	hg19	1	74507591	74507591	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	LRRIQ3	NM_001105659	exon7	c.G1024C	p.D342H	TTTCATCCACAAT	.	60.0	8.0	48.0	0.0	.	146	.	.	Atlas-SNP
FPGT-TNNI3K	100526835	hgsc.bcm.edu	hg19	1	74737339	74737339	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	TNNI3K,caecum,carcinoma,0,1	.	NM_001112808	exon7	c.G694T	p.G232X	CAGGTTGGATACG	.	113.0	13.0	95.0	0.0	.	.	.	.	Atlas-SNP
KIAA1107	23285	hgsc.bcm.edu	hg19	1	92648122	92648122	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	KIAA1107	NM_015237	exon8	c.A3568T	p.T1190S	ACAACTACTGAAA	.	459.0	72.0	459.0	0.0	.	60	.	.	Atlas-SNP
CHIA	27159	hgsc.bcm.edu	hg19	1	111861237	111861237	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CHIA	NM_201653	exon9	c.C852T	p.P284P	TGCCCCCACCTCT	.	149.0	27.0	157.0	0.0	.	115	.	.	Atlas-SNP
LOR	4014	hgsc.bcm.edu	hg19	1	153233779	153233779	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	LOR	NM_000427	exon2	c.C354G	p.G118G	CGGTGGCGGCGGC	.	29.0	6.0	31.0	0.0	.	19	.	.	Atlas-SNP
OR6P1	128366	hgsc.bcm.edu	hg19	1	158532474	158532474	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	OR6P1	NM_001160325	exon1	c.C921T	p.G307G	ACATCTGCCCATC	.	92.0	39.0	83.0	0.0	.	47	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158583532	158583532	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SPTA1	NM_003126	exon50	c.T6968A	p.L2323Q	GCATCCAGGAACT	.	187.0	25.0	144.0	0.0	.	720	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158609400	158609400	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SPTA1	NM_003126	exon35	c.T4952A	p.L1651Q	TCCAATAGCTGAT	.	93.0	8.0	63.0	0.0	.	720	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158650442	158650442	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	SPTA1,NS,carcinoma,-2,1	SPTA1	NM_003126	exon5	c.C609T	p.F203F	CACTTGGAAGTCT	.	135.0	33.0	77.0	0.0	.	720	.	.	Atlas-SNP
NOS1AP	9722	hgsc.bcm.edu	hg19	1	162336963	162336963	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	NOS1AP	NM_014697	exon10	c.T1227C	p.A409A	CTTGGCTGACTTT	.	92.0	9.0	86.0	0.0	.	139	.	.	Atlas-SNP
IER5	51278	hgsc.bcm.edu	hg19	1	181058762	181058762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	IER5	NM_016545	exon1	c.C724T	p.P242S	AAGAAGCCCCGCC	.	116.0	22.0	86.0	0.0	.	15	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181479649	181479649	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CACNA1E	NM_001205293	exon2	c.C303A	p.A101A	CATTGCCAACTGC	.	134.0	25.0	124.0	0.0	.	778	.	.	Atlas-SNP
CR2	1380	hgsc.bcm.edu	hg19	1	207647159	207647159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CR2	NM_001006658	exon12	c.T2169A	p.H723Q	CCAGCATGTGAGA	.	149.0	19.0	90.0	0.0	.	164	.	.	Atlas-SNP
KIF3C	3797	hgsc.bcm.edu	hg19	2	26203290	26203290	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	KIF3C	NM_002254	exon1	c.C1497G	p.D499E	CCGCAGGTCCTCC	.	81.0	25.0	69.0	0.0	.	79	.	.	Atlas-SNP
FAM98A	25940	hgsc.bcm.edu	hg19	2	33810623	33810623	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	FAM98A	NM_015475	exon7	c.G862T	p.E288X	TCTTTTCTCTTAT	.	232.0	62.0	222.0	0.0	.	42	.	.	Atlas-SNP
SLC8A1	6546	hgsc.bcm.edu	hg19	2	40656977	40656977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	SLC8A1,NS,carcinoma,0,1	SLC8A1	NM_001252624	exon1	c.G444T	p.E148D	GAGAATCTCAGGA	.	91.0	34.0	62.0	0.0	.	221	.	.	Atlas-SNP
KIAA1841	84542	hgsc.bcm.edu	hg19	2	61298747	61298747	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	KIAA1841	NM_032506	exon4	c.A157T	p.K53X	TGTGCAAAAAGGT	.	148.0	44.0	99.0	0.0	.	95	.	.	Atlas-SNP
TTC31	64427	hgsc.bcm.edu	hg19	2	74718274	74718274	+	Missense_Mutation	SNP	G	G	T	rs368112249	alternate_allele	TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	TTC31	NM_022492	exon6	c.G566T	p.R189L	GGAAGCGACAGGA	.	152.0	52.0	111.0	0.0	.	23	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141083347	141083347	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	LRP1B	NM_018557	exon80	c.T12324G	p.S4108S	GCTGACAGAGACT	.	120.0	43.0	95.0	0.0	.	1315	.	.	Atlas-SNP
ZEB2	9839	hgsc.bcm.edu	hg19	2	145182398	145182398	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	ZEB2	NM_014795	exon4	c.A368T	p.E123V	GTGGCTTCTGGCC	.	118.0	34.0	101.0	0.0	.	218	.	.	Atlas-SNP
ZEB2	9839	hgsc.bcm.edu	hg19	2	145182399	145182399	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	ZEB2	NM_014795	exon4	c.G367T	p.E123X	TGGCTTCTGGCCC	.	116.0	33.0	100.0	0.0	.	218	.	.	Atlas-SNP
CRYGA	1418	hgsc.bcm.edu	hg19	2	209028038	209028038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CRYGA	NM_014617	exon2	c.C142A	p.R48S	TGGGACGCTCATA	.	212.0	73.0	123.0	0.0	.	31	.	.	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	hg19	2	211459263	211459263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CPS1	NM_001122633	exon13	c.A1214G	p.K405R	TGATAAAGAAAGG	.	95.0	24.0	83.0	0.0	.	485	.	.	Atlas-SNP
MARCH4	57574	hgsc.bcm.edu	hg19	2	217124066	217124066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	MARCH4,right_upper_lobe,carcinoma,-1,1	MARCH4	NM_020814	exon4	c.G1202T	p.R401L	AGCTCTCGGCTGC	.	95.0	28.0	106.0	0.0	.	50	.	.	Atlas-SNP
EPHA4	2043	hgsc.bcm.edu	hg19	2	222301824	222301824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	EPHA4	NM_004438	exon12	c.T2093C	p.I698T	TCTGTTATGATCA	.	79.0	20.0	92.0	0.0	.	263	.	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	hg19	2	225659771	225659771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	DOCK10_ENST00000373702,colon,carcinoma,0,2	DOCK10	NM_014689	exon45	c.G4979A	p.R1660H	CTTATACGCTTAG	.	137.0	32.0	103.0	0.0	.	308	.	.	Atlas-SNP
C2orf54	79919	hgsc.bcm.edu	hg19	2	241834941	241834941	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	C2orf54	NM_001085437	exon1	c.A474G	p.A158A	GATGGCTGCTACC	.	78.0	17.0	83.0	0.0	.	14	.	.	Atlas-SNP
CHL1	10752	hgsc.bcm.edu	hg19	3	407776	407776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CHL1	NM_001253388	exon13	c.A1729G	p.I577V	TTTGAAATTAATG	.	204.0	18.0	136.0	0.0	.	242	.	.	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47088108	47088108	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SETD2	NM_014159	exon16	c.T6967G	p.Y2323D	GGGCATAACTCTA	.	92.0	26.0	86.0	0.0	.	721	.	.	Atlas-SNP
CELSR3	1951	hgsc.bcm.edu	hg19	3	48699314	48699314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CELSR3	NM_001407	exon1	c.G754T	p.A252S	TCCTCGCCGTGCG	.	77.0	11.0	66.0	0.0	.	237	.	.	Atlas-SNP
NISCH	11188	hgsc.bcm.edu	hg19	3	52525454	52525454	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	NISCH	NM_007184	exon20	c.T3829G	p.S1277A	GTGCTGTCCTCTC	.	77.0	26.0	63.0	0.0	.	97	.	.	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	hg19	3	151162741	151162741	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	IGSF10	NM_178822	exon4	c.C5028T	p.P1676P	GGGCAGGGGATTT	.	95.0	9.0	81.0	0.0	.	279	.	.	Atlas-SNP
GMPS	8833	hgsc.bcm.edu	hg19	3	155655379	155655379	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	GMPS	NM_003875	exon16	c.1981-1G>A	.	TTAATAGGTGGTA	.	221.0	112.0	165.0	0.0	.	70	.	.	Atlas-SNP
SLITRK3	22865	hgsc.bcm.edu	hg19	3	164907422	164907422	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SLITRK3	NM_014926	exon2	c.C1197T	p.N399N	AGAAATGTTATTA	.	145.0	13.0	111.0	0.0	.	263	.	.	Atlas-SNP
TFRC	7037	hgsc.bcm.edu	hg19	3	195792415	195792415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	TFRC	NM_001128148	exon10	c.T1097C	p.V366A	GAGGTTACCATCC	.	60.0	4.0	33.0	0.0	.	54	.	.	Atlas-SNP
KIAA0232	9778	hgsc.bcm.edu	hg19	4	6863293	6863293	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	KIAA0232	NM_014743	exon7	c.A1184T	p.E395V	ACACAGAGTATAA	.	78.0	11.0	108.0	0.0	.	102	.	.	Atlas-SNP
CPZ	8532	hgsc.bcm.edu	hg19	4	8605757	8605757	+	Missense_Mutation	SNP	G	G	A	rs376798665		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CPZ	NM_001014447	exon4	c.G551A	p.R184H	TCATCCGCTTCAG	.	69.0	13.0	90.0	0.0	.	95	.	.	Atlas-SNP
GC	2638	hgsc.bcm.edu	hg19	4	72634108	72634108	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	GC	NM_001204307	exon4	c.T228C	p.F76F	CTGTTCAAACGTG	.	230.0	14.0	291.0	0.0	.	132	.	.	Atlas-SNP
MAPK10	5602	hgsc.bcm.edu	hg19	4	87022310	87022310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	MAPK10	NM_002753	exon8	c.G625A	p.G209R	CCAGTCCAAAGTC	.	107.0	25.0	128.0	0.0	.	106	.	.	Atlas-SNP
CXXC4	80319	hgsc.bcm.edu	hg19	4	105393500	105393500	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CXXC4	NM_025212	exon3	c.A1083T	p.E361D	GAATGCTTCAGCG	.	522.0	109.0	671.0	1.0	.	20	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114244937	114244937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	ANK2	NM_001127493	exon28	c.C2860T	p.R954C	CTTGAACGTGACA	.	94.0	20.0	101.0	0.0	.	576	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155252859	155252859	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	DCHS2	NM_017639	exon10	c.A2241T	p.A747A	GGTGCCTGCTGGA	.	170.0	42.0	192.0	0.0	.	594	.	.	Atlas-SNP
FAM151B	167555	hgsc.bcm.edu	hg19	5	79817830	79817830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	FAM151B	NM_205548	exon5	c.T544C	p.W182R	TACAGTTGGACAA	.	54.0	20.0	61.0	0.0	.	25	.	.	Atlas-SNP
MAN2A1	4124	hgsc.bcm.edu	hg19	5	109178131	109178131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	MAN2A1	NM_002372	exon17	c.A2669G	p.N890S	GCCAAAATAGATT	.	473.0	178.0	449.0	0.0	.	136	.	.	Atlas-SNP
SLC12A2	6558	hgsc.bcm.edu	hg19	5	127520082	127520082	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SLC12A2	NM_001046	exon25	c.T3324A	p.I1108I	AATCATTGAGCCA	.	345.0	61.0	323.0	0.0	.	119	.	.	Atlas-SNP
PCDHB2	56133	hgsc.bcm.edu	hg19	5	140476346	140476346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	PCDHB2,NS,carcinoma,0,1	PCDHB2	NM_018936	exon1	c.G1972A	p.A658T	GCCACCGCCACGC	.	74.0	28.0	107.0	0.0	.	163	.	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	hg19	5	140562936	140562936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	PCDHB16	NM_020957	exon1	c.G802T	p.D268Y	GCCAGGGATTTAG	.	72.0	20.0	68.0	0.0	.	159	.	.	Atlas-SNP
SOX30	11063	hgsc.bcm.edu	hg19	5	157053481	157053481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SOX30	NM_178424	exon5	c.C2129T	p.P710L	GGCACAGGGTTTA	.	78.0	49.0	82.0	0.0	.	67	.	.	Atlas-SNP
TLX3	30012	hgsc.bcm.edu	hg19	5	170736625	170736625	+	Missense_Mutation	SNP	G	G	A	rs368190023		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	TLX3	NM_021025	exon1	c.G256A	p.G86S	CCCGCAGGCGTGA	.	129.0	64.0	118.0	0.0	.	23	.	.	Atlas-SNP
TLX3	30012	hgsc.bcm.edu	hg19	5	170736626	170736626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	TLX3	NM_021025	exon1	c.G257T	p.G86V	CCGCAGGCGTGAT	.	130.0	65.0	117.0	0.0	.	23	.	.	Atlas-SNP
CNOT6	57472	hgsc.bcm.edu	hg19	5	180001165	180001165	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CNOT6	NM_015455	exon12	c.C1639G	p.Q547E	CTGCCCCAAGTCA	.	132.0	37.0	129.0	0.0	.	47	.	.	Atlas-SNP
HIST1H4D	8360	hgsc.bcm.edu	hg19	6	26189297	26189297	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	HIST1H4D	NM_003539	exon1	c.G8C	p.G3A	CCGCGGCCAGACA	.	60.0	17.0	38.0	0.0	.	28	.	.	Atlas-SNP
MEP1A	4224	hgsc.bcm.edu	hg19	6	46803136	46803136	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	MEP1A	NM_005588	exon13	c.A1934T	p.Q645L	TGAGCCAGGGGCA	.	108.0	35.0	88.0	0.0	.	93	.	.	Atlas-SNP
CRISP1	167	hgsc.bcm.edu	hg19	6	49825047	49825047	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CRISP1	NM_170609	exon3	c.66+1G>T	.	CACATACTTTCAT	.	416.0	118.0	335.0	0.0	.	45	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75853040	75853040	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	COL12A1	NM_004370	exon26	c.T4755C	p.F1585F	TTCCCAAAAGACA	.	122.0	23.0	109.0	0.0	.	385	.	.	Atlas-SNP
FAXC	84553	hgsc.bcm.edu	hg19	6	99781226	99781226	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	.	NM_032511	exon4	c.599+1G>T	.	GACTCACCAGTAG	.	79.0	22.0	81.0	0.0	.	.	.	.	Atlas-SNP
FAXC	84553	hgsc.bcm.edu	hg19	6	99781227	99781227	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	.	NM_032511	exon3	c.G599C	p.W200S	ACTCACCAGTAGA	.	81.0	23.0	83.0	0.0	.	.	.	.	Atlas-SNP
WASF1	8936	hgsc.bcm.edu	hg19	6	110448713	110448713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	WASF1	NM_001024935	exon3	c.A92T	p.N31I	GAAATATTGGTTA	.	135.0	28.0	125.0	0.0	.	35	.	.	Atlas-SNP
DSE	29940	hgsc.bcm.edu	hg19	6	116756880	116756880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	DSE	NM_001080976	exon6	c.T1249C	p.F417L	CTTTCCTTCAAGT	.	199.0	52.0	149.0	0.0	.	98	.	.	Atlas-SNP
TRDN	10345	hgsc.bcm.edu	hg19	6	123673710	123673710	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	TRDN	NM_001251987	exon21	c.A1346T	p.E449V	GTTTTCTCTTCCT	.	99.0	26.0	103.0	0.0	.	88	.	.	Atlas-SNP
TAB2	23118	hgsc.bcm.edu	hg19	6	149700569	149700569	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	TAB2	NM_015093	exon5	c.C1518A	p.L506L	GCACCTCACGGAC	.	190.0	57.0	152.0	0.0	.	55	.	.	Atlas-SNP
CYP2W1	54905	hgsc.bcm.edu	hg19	7	1026832	1026832	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CYP2W1	NM_017781	exon6	c.C909T	p.A303A	CTCGGCCACGCTG	.	151.0	68.0	100.0	0.0	.	28	.	.	Atlas-SNP
GRID2IP	392862	hgsc.bcm.edu	hg19	7	6547736	6547736	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	GRID2IP	NM_001145118	exon13	c.C2424T	p.P808P	TGCACAGGGCACG	.	33.0	10.0	23.0	0.0	.	82	.	.	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	hg19	7	12397064	12397064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	VWDE	NM_001135924	exon17	c.G3352T	p.V1118L	AGGCCACGAACTG	.	131.0	16.0	108.0	0.0	.	123	.	.	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	hg19	7	12407058	12407058	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	VWDE	NM_001135924	exon13	c.T2823C	p.N941N	CATACAATTATAT	.	328.0	139.0	282.0	0.0	.	123	.	.	Atlas-SNP
CBX3	11335	hgsc.bcm.edu	hg19	7	26246056	26246056	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	CBX3,NS,carcinoma,0,1	CBX3	NM_016587	exon3	c.C93T	p.V31V	ATTTGTCGTGGAA	.	158.0	22.0	135.0	0.0	.	25	.	.	Atlas-SNP
GNAT3	346562	hgsc.bcm.edu	hg19	7	80088145	80088145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	GNAT3	NM_001102386	exon8	c.A907G	p.I303V	TCTTGATGTAGTT	.	64.0	11.0	70.0	0.0	.	65	.	.	Atlas-SNP
LAMB4	22798	hgsc.bcm.edu	hg19	7	107689935	107689935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	LAMB4	NM_007356	exon27	c.T3958C	p.S1320P	CAGCAGATGATGA	.	77.0	19.0	79.0	0.0	.	253	.	.	Atlas-SNP
PRSS37	136242	hgsc.bcm.edu	hg19	7	141537856	141537856	+	Silent	SNP	C	C	T	rs201423018	by1000genomes;alternate_allele	TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	PRSS37	NM_001171951	exon3	c.G234A	p.Q78Q	AATTGTCTGTTCA	.	127.0	46.0	114.0	0.0	.	42	.	C|1.000;G|0.000	Atlas-SNP
KCNS2	3788	hgsc.bcm.edu	hg19	8	99440321	99440321	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	KCNS2	NM_020697	exon2	c.C114T	p.F38F	GCGCTTCCCCGAG	.	154.0	17.0	82.0	0.0	.	93	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113326738	113326738	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CSMD3	NM_198123	exon48	c.T7469A	p.V2490E	TTTTCCACTGAAA	.	252.0	47.0	169.0	0.0	.	2325	.	.	Atlas-SNP
GPAA1	8733	hgsc.bcm.edu	hg19	8	145140854	145140854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	GPAA1	NM_003801	exon12	c.G1692T	p.W564C	CCTGTGGCGGGAG	.	44.0	11.0	19.0	0.0	.	40	.	.	Atlas-SNP
RECQL4	9401	hgsc.bcm.edu	hg19	8	145737119	145737119	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	RECQL4	NM_004260	exon21	c.G3447A	p.L1149L	TGGCCTCAGGGAC	.	118.0	7.0	71.0	0.0	.	75	.	.	Atlas-SNP
ZNF7	7553	hgsc.bcm.edu	hg19	8	146067302	146067302	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	ZNF7	NM_003416	exon5	c.A810G	p.R270R	TCAGAGAATCCAC	.	140.0	60.0	63.0	0.0	.	62	.	.	Atlas-SNP
NTRK2	4915	hgsc.bcm.edu	hg19	9	87342704	87342704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	NTRK2	NM_001018065	exon9	c.T989C	p.I330T	AATACATCTGTAC	.	140.0	45.0	132.0	0.0	.	331	.	.	Atlas-SNP
PDCL	5082	hgsc.bcm.edu	hg19	9	125585315	125585315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	PDCL,NS,carcinoma,0,1	PDCL	NM_005388	exon3	c.C334A	p.Q112K	TCTCCTGGAGGTC	.	74.0	4.0	91.0	0.0	.	24	.	.	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	hg19	9	138647016	138647016	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	KCNT1	NM_020822	exon6	c.540+1G>T	.	ATCCAGGTGAGTG	.	57.0	25.0	43.0	0.0	.	139	.	.	Atlas-SNP
TAF3	83860	hgsc.bcm.edu	hg19	10	8051256	8051256	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	TAF3	NM_031923	exon5	c.T2531A	p.V844E	CCCCCGTGCGCAG	.	85.0	14.0	78.0	0.0	.	93	.	.	Atlas-SNP
C1QL3	389941	hgsc.bcm.edu	hg19	10	16562897	16562897	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	C1QL3	NM_001010908	exon1	c.C168T	p.P56P	GAAGGTGGGCAGG	.	36.0	7.0	28.0	0.0	.	27	.	.	Atlas-SNP
GDF2	2658	hgsc.bcm.edu	hg19	10	48416588	48416588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	GDF2	NM_016204	exon1	c.A106G	p.N36D	GGGCGTTTCCCCC	.	79.0	21.0	76.0	0.0	.	77	.	.	Atlas-SNP
SUPV3L1	6832	hgsc.bcm.edu	hg19	10	70967559	70967559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SUPV3L1	NM_003171	exon14	c.A1787G	p.Q596R	CCAGGCAGTATAG	.	150.0	21.0	123.0	0.0	.	61	.	.	Atlas-SNP
TYSND1	219743	hgsc.bcm.edu	hg19	10	71902607	71902607	+	Missense_Mutation	SNP	C	C	T	rs143461435		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	TYSND1	NM_173555	exon3	c.G1300A	p.E434K	CAGCCTCGCCTGC	.	54.0	7.0	71.0	0.0	.	20	.	C|1.000;T|0.000	Atlas-SNP
ADAMTS14	140766	hgsc.bcm.edu	hg19	10	72518013	72518013	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	ADAMTS14	NM_139155	exon21	c.C3159G	p.P1053P	TGAACCCCTACAT	.	92.0	17.0	91.0	0.0	.	148	.	.	Atlas-SNP
DYDC1	143241	hgsc.bcm.edu	hg19	10	82098285	82098285	+	Missense_Mutation	SNP	C	C	T	rs140462481	byfrequency;alternate_allele	TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	DYDC1	NM_001269053	exon6	c.G442A	p.D148N	AACGATCGCTGAT	.	120.0	36.0	105.0	0.0	.	15	.	C|1.000;A|0.000	Atlas-SNP
PAPSS2	9060	hgsc.bcm.edu	hg19	10	89472858	89472858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	PAPSS2	NM_001015880	exon3	c.A172G	p.I58V	ACAACGATAAGTT	.	163.0	55.0	163.0	0.0	.	46	.	.	Atlas-SNP
PLCE1	51196	hgsc.bcm.edu	hg19	10	96084326	96084326	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	PLCE1	NM_016341	exon31	c.6720+2T>C	.	TGCAGGTAAAGTT	.	91.0	34.0	89.0	0.0	.	543	.	.	Atlas-SNP
SEC31B	25956	hgsc.bcm.edu	hg19	10	102267799	102267799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SEC31B	NM_015490	exon6	c.G505A	p.E169K	TGTCCTCTGGAGG	.	71.0	19.0	56.0	0.0	.	84	.	.	Atlas-SNP
CPXM2	119587	hgsc.bcm.edu	hg19	10	125557598	125557598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CPXM2	NM_198148	exon6	c.G783T	p.E261D	GGGTAGCTCATTG	.	120.0	21.0	102.0	0.0	.	120	.	.	Atlas-SNP
SLC6A5	9152	hgsc.bcm.edu	hg19	11	20652251	20652251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SLC6A5	NM_004211	exon10	c.T1514C	p.V505A	TAATTGTCACCTG	.	170.0	53.0	124.0	0.0	.	151	.	.	Atlas-SNP
OR8H2	390151	hgsc.bcm.edu	hg19	11	55873358	55873358	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	OR8H2	NM_001005200	exon1	c.T840G	p.I280M	TACTATTGTGATT	.	182.0	59.0	155.0	0.0	.	117	.	.	Atlas-SNP
MRPL21	219927	hgsc.bcm.edu	hg19	11	68660463	68660463	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	MRPL21	NM_181515	exon7	c.195-2A>G	.	CCTTTCTAGAAGG	.	74.0	20.0	104.0	0.0	.	13	.	.	Atlas-SNP
GRM5	2915	hgsc.bcm.edu	hg19	11	88386445	88386445	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	GRM5	NM_000842	exon4	c.A1038G	p.P346P	TGTTTCTGGCCGG	.	128.0	36.0	103.0	0.0	.	414	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92495256	92495256	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	FAT3	NM_001008781	exon4	c.G3904T	p.G1302X	GATGACGGAAAGT	.	156.0	41.0	126.0	0.0	.	1822	.	.	Atlas-SNP
ARHGAP42	143872	hgsc.bcm.edu	hg19	11	100803985	100803985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	ARHGAP42	NM_152432	exon7	c.G696T	p.L232F	CAACTTGCAGAAT	.	66.0	21.0	54.0	0.0	.	32	.	.	Atlas-SNP
ABCG4	64137	hgsc.bcm.edu	hg19	11	119031060	119031060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	ABCG4	NM_022169	exon13	c.G1561C	p.G521R	TCTTTGGGGCTGC	.	68.0	17.0	56.0	0.0	.	77	.	.	Atlas-SNP
USP2	9099	hgsc.bcm.edu	hg19	11	119228005	119228005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	USP2	NM_004205	exon12	c.A1622G	p.Y541C	AGGTTGTAAACAG	.	141.0	44.0	106.0	0.0	.	71	.	.	Atlas-SNP
LRP6	4040	hgsc.bcm.edu	hg19	12	12356291	12356291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	LRP6	NM_002336	exon3	c.C493T	p.R165C	CAGCACGTTCTAT	.	127.0	30.0	113.0	0.0	.	170	.	.	Atlas-SNP
PKP2	5318	hgsc.bcm.edu	hg19	12	33031964	33031964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	PKP2	NM_004572	exon2	c.A226C	p.N76H	GAAGATTTCCTGC	.	97.0	26.0	86.0	0.0	.	110	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46230676	46230676	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	ARID2,colon,carcinoma,0,1	ARID2	NM_152641	exon8	c.A925T	p.N309Y	GCAGCTAATCGTA	.	166.0	62.0	160.0	0.0	.	311	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46254582	46254582	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	ARID2	NM_152641	exon16	c.4774-2A>G	.	TTTCACAGAACAC	.	67.0	24.0	43.0	0.0	.	311	.	.	Atlas-SNP
NEUROD4	58158	hgsc.bcm.edu	hg19	12	55420925	55420925	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	NEUROD4	NM_021191	exon2	c.A702C	p.E234D	GGGAGAATCGTCC	.	94.0	24.0	76.0	0.0	.	87	.	.	Atlas-SNP
MGAT4C	25834	hgsc.bcm.edu	hg19	12	86373990	86373990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	MGAT4C	NM_013244	exon7	c.A514G	p.I172V	CATGTATAACCAT	.	153.0	41.0	102.0	0.0	.	110	.	.	Atlas-SNP
TMCC3	57458	hgsc.bcm.edu	hg19	12	94976245	94976245	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	TMCC3	NM_020698	exon2	c.C148G	p.L50V	AGTTGAGGTTGGT	.	84.0	19.0	80.0	0.0	.	63	.	.	Atlas-SNP
SRRM4	84530	hgsc.bcm.edu	hg19	12	119594393	119594393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SRRM4	NM_194286	exon13	c.C1626A	p.S542R	CAGTAGCCGCTCG	.	167.0	54.0	140.0	0.0	.	131	.	.	Atlas-SNP
ZMYM5	9205	hgsc.bcm.edu	hg19	13	20399130	20399130	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	ZMYM5	NM_001142684	exon8	c.A1497G	p.T499T	TTGAAATGTATCA	.	208.0	51.0	171.0	0.0	.	73	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39266309	39266309	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	FREM2	NM_207361	exon1	c.G4828C	p.E1610Q	GGCACTGAGTCAA	.	166.0	48.0	162.0	0.0	.	385	.	.	Atlas-SNP
FNDC3A	22862	hgsc.bcm.edu	hg19	13	49742771	49742771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	FNDC3A	NM_001079673	exon10	c.A1060G	p.I354V	AATTCTATAAAGG	.	195.0	63.0	144.0	0.0	.	93	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77642923	77642923	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	MYCBP2	NM_015057	exon70	c.G11948C	p.R3983T	CGGACTCTGGTAG	.	106.0	39.0	76.0	0.0	.	1029	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77743838	77743838	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	MYCBP2	NM_015057	exon39	c.C5806G	p.P1936A	GTTCTGGAATGTC	.	724.0	230.0	656.0	0.0	.	1029	.	.	Atlas-SNP
SLC22A17	51310	hgsc.bcm.edu	hg19	14	23815904	23815904	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SLC22A17	NM_020372	exon9	c.C1570G	p.R524G	CACAGCGGGTAGG	.	42.0	23.0	63.0	0.0	.	32	.	.	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23884288	23884288	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	MYH7	NM_000257	exon37	c.G5475A	p.E1825E	CTCCAGCTCATTC	.	39.0	14.0	38.0	0.0	.	349	.	.	Atlas-SNP
PCK2	5106	hgsc.bcm.edu	hg19	14	24566238	24566238	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	PCK2	NM_001018073	exon2	c.A167T	p.Q56L	TGTGCCAACCAGA	.	81.0	14.0	75.0	0.0	.	66	.	.	Atlas-SNP
PRPF39	55015	hgsc.bcm.edu	hg19	14	45584061	45584061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	PRPF39	NM_017922	exon14	c.A1955G	p.Y652C	TTCAGTACAATTA	.	226.0	44.0	233.0	0.0	.	46	.	.	Atlas-SNP
PRPF39	55015	hgsc.bcm.edu	hg19	14	45584078	45584078	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	PRPF39	NM_017922	exon14	c.T1972G	p.W658G	AATCCTTGGAATT	.	247.0	48.0	259.0	0.0	.	46	.	.	Atlas-SNP
FAM189A1	23359	hgsc.bcm.edu	hg19	15	29415840	29415840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	FAM189A1	NM_015307	exon11	c.C1322A	p.A441D	GCCGTGGCAGAGC	.	100.0	11.0	95.0	0.0	.	20	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33926872	33926872	+	Missense_Mutation	SNP	G	G	T	rs369597197	alternate_allele	TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	RYR3	NM_001243996	exon25	c.G3113T	p.R1038L	GCCTGCGGGAAGC	.	130.0	40.0	110.0	0.0	.	760	.	.	Atlas-SNP
EIF2AK4	440275	hgsc.bcm.edu	hg19	15	40241361	40241361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	EIF2AK4	NM_001013703	exon4	c.C405A	p.S135R	TCTCAGCGAGCAT	.	83.0	18.0	79.0	0.0	.	107	.	.	Atlas-SNP
CGNL1	84952	hgsc.bcm.edu	hg19	15	57732594	57732594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CGNL1	NM_001252335	exon4	c.A1622G	p.K541R	TCTTAAAGGGCCA	.	128.0	41.0	142.0	0.0	.	125	.	.	Atlas-SNP
THAP10	56906	hgsc.bcm.edu	hg19	15	71175114	71175114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	THAP10,NS,carcinoma,0,1	THAP10	NM_020147	exon2	c.G563A	p.R188H	CGGTGACGGGGCC	.	183.0	29.0	177.0	0.0	.	19	.	.	Atlas-SNP
MCTP2	55784	hgsc.bcm.edu	hg19	15	94945187	94945187	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	MCTP2	NM_001159643	exon16	c.T2024A	p.M675K	ATACAATGCAGTT	.	167.0	33.0	145.0	0.0	.	122	.	.	Atlas-SNP
IGF1R	3480	hgsc.bcm.edu	hg19	15	99467196	99467196	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	IGF1R	NM_000875	exon12	c.T2577A	p.N859K	TCCCAATGGATTG	.	169.0	35.0	120.0	0.0	.	147	.	.	Atlas-SNP
PKD1	5310	hgsc.bcm.edu	hg19	16	2149932	2149932	+	Missense_Mutation	SNP	C	C	T	rs201780393		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	PKD1	NM_000296	exon29	c.G9853A	p.V3285I	GGAGAACGCAGCA	.	152.0	63.0	158.0	0.0	.	184	.	C|0.999;T|0.001	Atlas-SNP
ZNF75A	7627	hgsc.bcm.edu	hg19	16	3367850	3367850	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	ZNF75A	NM_153028	exon6	c.A872T	p.H291L	TTAGACACCAGAA	.	72.0	30.0	55.0	0.0	.	34	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	21080830	21080830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	DNAH3	NM_017539	exon23	c.T3287C	p.I1096T	CTGAAGATTGGTT	.	116.0	45.0	154.0	0.0	.	1142	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30749946	30749946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SRCAP	NM_006662	exon34	c.G8585T	p.R2862M	GGGGGAGGCCCCC	.	100.0	20.0	57.0	0.0	.	298	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30749947	30749947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SRCAP	NM_006662	exon34	c.G8586T	p.R2862S	GGGGAGGCCCCCC	.	100.0	19.0	56.0	0.0	.	298	.	.	Atlas-SNP
AARS	16	hgsc.bcm.edu	hg19	16	70301705	70301705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	AARS	NM_001605	exon9	c.C1079T	p.A360V	GGAAATGCATCTC	.	61.0	11.0	68.0	0.0	.	62	.	.	Atlas-SNP
ADAD2	161931	hgsc.bcm.edu	hg19	16	84229451	84229451	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	ADAD2	NM_139174	exon8	c.G1329A	p.P443P	CCTCCCGCACAGC	.	70.0	23.0	87.0	0.0	.	46	.	.	Atlas-SNP
TCF25	22980	hgsc.bcm.edu	hg19	16	89965023	89965023	+	Missense_Mutation	SNP	C	C	T	rs144328773	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	TCF25	NM_014972	exon10	c.C1081T	p.R361C	TGCCCGCGCACGG	.	21.0	10.0	33.0	0.0	.	61	.	C|0.999;A|0.001	Atlas-SNP
NCOR1	9611	hgsc.bcm.edu	hg19	17	15976836	15976836	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	NCOR1	NM_001190440	exon27	c.G3766T	p.E1256X	TGATTTCATGAGC	.	60.0	18.0	60.0	0.0	.	240	.	.	Atlas-SNP
CCDC144A	9720	hgsc.bcm.edu	hg19	17	16667283	16667283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	CCDC144A	NM_014695	exon15	c.A3892G	p.N1298D	AGAACTAATGAGA	.	351.0	105.0	283.0	0.0	.	53	.	.	Atlas-SNP
SLC5A10	125206	hgsc.bcm.edu	hg19	17	18872377	18872377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	SLC5A10,NS,carcinoma,0,1	SLC5A10	NM_001042450	exon6	c.G466A	p.A156T	CTGTACGCGGGGG	.	41.0	10.0	43.0	0.0	.	55	.	.	Atlas-SNP
NOS2	4843	hgsc.bcm.edu	hg19	17	26096596	26096596	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	NOS2,right_upper_lobe,carcinoma,0,1	NOS2	NM_000625	exon16	c.G1824A	p.S608S	GAAGAGCGATTTC	.	234.0	69.0	177.0	0.0	.	113	.	.	Atlas-SNP
SARM1	23098	hgsc.bcm.edu	hg19	17	26715488	26715488	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SARM1	NM_015077	exon8	c.T1850G	p.V617G	ACTTTGTGTTGGT	.	87.0	27.0	64.0	0.0	.	40	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76497896	76497896	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	DNAH17	NM_173628	exon34	c.G5250A	p.R1750R	CTTCATCCTGTCG	.	49.0	12.0	38.0	0.0	.	347	.	.	Atlas-SNP
RIT2	6014	hgsc.bcm.edu	hg19	18	40554066	40554066	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	RIT2	NM_001272077	exon3	c.C207T	p.Y69Y	GTCCAAGTAAGCT	.	346.0	119.0	388.0	0.0	.	56	.	.	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	hg19	18	43532421	43532421	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	EPG5	NM_020964	exon3	c.A1197G	p.A399A	GAGCAATGCATAG	.	62.0	19.0	76.0	0.0	.	199	.	.	Atlas-SNP
SH3GL1	6455	hgsc.bcm.edu	hg19	19	4366971	4366971	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SH3GL1	NM_001199944	exon2	c.A66T	p.G22G	GGCCCCTCCGACC	.	51.0	6.0	51.0	0.0	.	52	.	.	Atlas-SNP
ANGPTL4	51129	hgsc.bcm.edu	hg19	19	8429440	8429440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	ANGPTL4	NM_001039667	exon1	c.G235A	p.A79T	GGGTCCGCCTGTC	.	115.0	40.0	107.0	0.0	.	21	.	.	Atlas-SNP
LRP3	4037	hgsc.bcm.edu	hg19	19	33693781	33693781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	LRP3	NM_002333	exon3	c.A149G	p.H50R	AGCAGCACACGGA	.	91.0	32.0	82.0	0.0	.	46	.	.	Atlas-SNP
BCAM	4059	hgsc.bcm.edu	hg19	19	45315505	45315505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	BCAM	NM_001013257	exon3	c.G290T	p.G97V	CCCGGGGCCGCAG	.	112.0	40.0	123.0	0.0	.	53	.	.	Atlas-SNP
FCGRT	2217	hgsc.bcm.edu	hg19	19	50027980	50027980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	FCGRT	NM_001136019	exon5	c.A818G	p.Y273C	ACCACTACTGCTG	.	19.0	6.0	14.0	0.0	.	23	.	.	Atlas-SNP
MRPS26	64949	hgsc.bcm.edu	hg19	20	3027362	3027362	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	MRPS26	NM_030811	exon3	c.G462C	p.E154D	CAAGGAGCGGGAA	.	99.0	39.0	97.0	0.0	.	7	.	.	Atlas-SNP
MACROD2	140733	hgsc.bcm.edu	hg19	20	16025252	16025252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	MACROD2,NS,adenocarcinoma,0,1	MACROD2	NM_001033087	exon13	c.C563A	p.P188Q	ATGACCCAACAGA	.	151.0	38.0	162.0	1.0	.	34	.	.	Atlas-SNP
RBM12	10137	hgsc.bcm.edu	hg19	20	34241608	34241608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	RBM12	NM_001198840	exon2	c.C1637A	p.A546D	ATGTGGGCACAGA	.	111.0	24.0	84.0	0.0	.	93	.	.	Atlas-SNP
NPBWR2	2832	hgsc.bcm.edu	hg19	20	62738102	62738102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	NPBWR2	NM_005286	exon1	c.A83G	p.D28G	CCATTGTCCTGAG	.	70.0	31.0	58.0	0.0	.	36	.	.	Atlas-SNP
UMODL1	89766	hgsc.bcm.edu	hg19	21	43531615	43531615	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	UMODL1	NM_173568	exon11	c.G2283A	p.Q761Q	TGGACAGCTACAG	.	107.0	35.0	99.0	0.0	.	186	.	.	Atlas-SNP
PCBP3	54039	hgsc.bcm.edu	hg19	21	47350755	47350755	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	PCBP3	NM_020528	exon11	c.A852G	p.S284S	CCAGTCATCAGGT	.	66.0	21.0	45.0	0.0	.	82	.	.	Atlas-SNP
GGTLC2	91227	hgsc.bcm.edu	hg19	22	22989284	22989284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	GGTLC2	NM_199127	exon2	c.C237A	p.D79E	GGATGACTTCAGC	.	248.0	78.0	273.0	0.0	.	20	.	.	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26291221	26291221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	MYO18B	NM_032608	exon28	c.A4642G	p.T1548A	GAGCTGACAGCCA	.	82.0	27.0	91.0	0.0	.	322	.	.	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26343703	26343703	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	MYO18B	NM_032608	exon36	c.A5657T	p.Q1886L	GGCTGCAGTTTGA	.	44.0	15.0	60.0	0.0	.	322	.	.	Atlas-SNP
EIF4ENIF1	56478	hgsc.bcm.edu	hg19	22	31850167	31850167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	EIF4ENIF1	NM_019843	exon10	c.A1475G	p.K492R	CTTGCCTTCATTG	.	110.0	38.0	100.0	0.0	.	80	.	.	Atlas-SNP
IL2RB	3560	hgsc.bcm.edu	hg19	22	37524527	37524527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	IL2RB	NM_000878	exon10	c.C1265T	p.P422L	CTGGAGGGGAAGG	.	83.0	31.0	73.0	0.0	.	44	.	.	Atlas-SNP
PPARA	5465	hgsc.bcm.edu	hg19	22	46594481	46594481	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	PPARA	NM_001001928	exon3	c.C201T	p.V67V	CTCGGTCATCACG	.	96.0	17.0	98.0	0.0	.	36	.	.	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	hg19	X	50341497	50341497	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	SHROOM4	NM_020717	exon8	c.C3981A	p.V1327V	CCGCAAGACAGAA	.	111.0	63.0	88.0	0.0	.	171	.	.	Atlas-SNP
DGAT2L6	347516	hgsc.bcm.edu	hg19	X	69420190	69420190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	DGAT2L6	NM_198512	exon4	c.T353C	p.I118T	TCTTCATCAACTT	.	100.0	58.0	92.0	0.0	.	40	.	.	Atlas-SNP
KIAA1210	57481	hgsc.bcm.edu	hg19	X	118220842	118220842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	KIAA1210	NM_020721	exon11	c.G4351A	p.E1451K	GATCTTCTTTCTT	.	115.0	68.0	78.0	0.0	.	171	.	.	Atlas-SNP
COX3	5742	hgsc.bcm.edu	hg19	MT	9605	9605	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	.	ENST00000362079	exon1	c.C399T	p.N133N	CCTAAACACATCC	.	57.0	29.0	54.0	0.0	.	.	.	.	Atlas-SNP
KIAA0247	9766	hgsc.bcm.edu	hg19	14	70171412	70171412	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	KIAA0247	NM_014734	exon4	c.410delT	p.V137fs	.	.	56.0	15.0	69.0	0.0	.	30	.	.	Atlas-INDEL
NEFH	4744	hgsc.bcm.edu	hg19	22	29885589	29885590	+	In_Frame_Ins	INS	-	-	CCCCTGAGAAGGCCAAGT	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.,4	NEFH	NM_021076	exon4	c.1960_1961insCCCCTGAGAAGGCCAAGT	p.S654delinsSPEKAKS	.	.	263.0	135.0	267.0	0.0	.	178	.	.	Atlas-INDEL
NCOA2	10499	hgsc.bcm.edu	hg19	8	71082595	71082597	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	NCOA2	NM_006540	exon6	c.382_384del	p.128_128del	.	.	162.0	29.0	120.0	0.0	.	147	.	.	Atlas-Indel,Pindel
ABHD4	63874	hgsc.bcm.edu	hg19	14	23072409	23072410	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	ABHD4	NM_022060	exon3	c.227_228insT	p.G76fs	.	.	103.0	29.0	114.0	0.0	.	30	.	.	Atlas-Indel,Pindel
MAP4K5	11183	hgsc.bcm.edu	hg19	14	50904667	50904668	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	MAP4K5	NM_006575	exon24	c.1768_1769insA	p.P590fs	.	.	222.0	25.0	203.0	0.0	.	48	.	.	Atlas-Indel,Pindel
NCOR2	9612	hgsc.bcm.edu	hg19	12	124914165	124914166	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	NCOR2	NM_006312	exon12	c.1143_1144del	p.381_382del	.	.	115.0	26.0	116.0	0.0	.	475	.	.	Atlas-Indel,Pindel
GLE1	2733	hgsc.bcm.edu	hg19	9	131285594	131285601	+	Frame_Shift_Del	DEL	AAGCTGAG	AAGCTGAG	-	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	AAGCTGAG	AAGCTGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	GLE1	NM_001499	exon5	c.616_623del	p.206_208del	.	.	110.0	24.0	124.0	0.0	.	42	.	.	Atlas-Indel,Pindel
ANKRD17	26057	hgsc.bcm.edu	hg19	4	73956454	73956454	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	ANKRD17	NM_032217	exon29	c.6892delC	p.H2298fs	.	.	146.0	31.0	158.0	0.0	.	214	.	.	Atlas-Indel,Pindel
TRIM13	10206	hgsc.bcm.edu	hg19	13	50590444	50590444	+	RNA	DEL	A	A	-	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	TRIM13	.	.	.	.	.	.	152.0	41.0	142.0	0.0	.	30	.	.	Atlas-Indel,Pindel
RPS6	6194	hgsc.bcm.edu	hg19	9	19376359	19376380	+	Frame_Shift_Del	DEL	TTTGTTCCTGGCGCTTCTCCTT	TTTGTTCCTGGCGCTTCTCCTT	-	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	TTTGTTCCTGGCGCTTCTCCTT	TTTGTTCCTGGCGCTTCTCCTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	RPS6	NM_001010	exon6	c.662_683del	p.221_228del	.	.	97.0	10.0	126.0	0.0	.	25	.	.	Pindel
KIAA0247	9766	hgsc.bcm.edu	hg19	14	70171412	70171413	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-CC-A7IE-01A-21D-A382-10	TCGA-CC-A7IE-10A-01D-A385-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c1caf517-5052-48e3-ad80-8458b3d2ff5f	ab81329b-c119-4a5a-863c-5b50f48cee3f	.	KIAA0247	NM_014734	exon4	c.410_411del	p.137_137del	.	.	58.0	14.0	69.0	0.0	.	30	.	.	Pindel