Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PRAMEF17 391004 hgsc.bcm.edu hg19 1 13716967 13716967 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 PRAMEF17,right_upper_lobe,carcinoma,0,1 PRAMEF17 NM_001099851 exon2 c.G454T p.D152Y TTCATAGACCTCT . 212.0 96.0 209.0 0.0 . 12 . . Atlas-SNP HSPG2 3339 hgsc.bcm.edu hg19 1 22172730 22172730 + Missense_Mutation SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . HSPG2 NM_005529 exon64 c.C8335T p.R2779W GCAGCCGCAGCCG . 104.0 5.0 76.0 0.0 . 311 . . Atlas-SNP CELA3B 23436 hgsc.bcm.edu hg19 1 22304871 22304871 + Missense_Mutation SNP A A G novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . CELA3B NM_007352 exon2 c.A53G p.Y18C CAGGCTATGGCCC . 108.0 42.0 102.0 0.0 . 24 . . Atlas-SNP FGR 2268 hgsc.bcm.edu hg19 1 27939760 27939760 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . FGR NM_001042729 exon12 c.C1351A p.L451I TGATGAGCTCAGT . 127.0 62.0 111.0 0.0 . 39 . . Atlas-SNP NCDN 23154 hgsc.bcm.edu hg19 1 36025987 36025987 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . NCDN NM_014284 exon3 c.G235T p.A79S TTCGATGCTGTCG . 109.0 36.0 129.0 0.0 . 79 . . Atlas-SNP UQCRH 7388 hgsc.bcm.edu hg19 1 46782226 46782226 + Silent SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . UQCRH NM_006004 exon4 c.G246T p.V82V CTAGGTGGCCCAC . 228.0 118.0 217.0 0.0 . 4 . . Atlas-SNP CELSR2 1952 hgsc.bcm.edu hg19 1 109810616 109810616 + Silent SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . CELSR2 NM_001408 exon17 c.G6252T p.L2084L GCGGCTGCTGGCC . 32.0 9.0 45.0 0.0 . 228 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152280060 152280060 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . FLG NM_002016 exon3 c.C7302A p.S2434R TCCAGTGCTGGTC . 156.0 47.0 145.0 0.0 . 900 . . Atlas-SNP CACNA1S 779 hgsc.bcm.edu hg19 1 201021743 201021743 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . CACNA1S NM_000069 exon32 c.C3895A p.Q1299K TTATTTGGGTCCC . 113.0 38.0 123.0 0.0 . 249 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228525079 228525079 + Missense_Mutation SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . OBSCN NM_001271223 exon77 c.G19666A p.G6556S GCCCGAGGCGAGG . 165.0 55.0 223.0 0.0 . 2142 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237947437 237947437 + Missense_Mutation SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . RYR2 NM_001035 exon90 c.C12425T p.A4142V GAAGCGCCAAACG . 106.0 43.0 155.0 0.0 . 1273 . . Atlas-SNP FAM84A 151354 hgsc.bcm.edu hg19 2 14774404 14774404 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . FAM84A NM_145175 exon2 c.G301T p.G101C GTGAGCGGTGGCC . 14.0 7.0 13.0 0.0 . 23 . . Atlas-SNP DNMT3A 1788 hgsc.bcm.edu hg19 2 25464487 25464487 + Missense_Mutation SNP G G A rs375399431 TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 DNMT3A_ENST00000380746,NS,carcinoma,+2,1 DNMT3A NM_175629 exon17 c.C2026T p.R676W GGTGCCGCACCAT . 80.0 4.0 101.0 0.0 . 1807 . . Atlas-SNP OTOF 9381 hgsc.bcm.edu hg19 2 26699163 26699163 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . OTOF NM_194248 exon23 c.G2699T p.G900V GCCGAGCCGAAGC . 27.0 10.0 27.0 0.0 . 524 . . Atlas-SNP C2orf16 84226 hgsc.bcm.edu hg19 2 27804122 27804122 + Silent SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . C2orf16 NM_032266 exon1 c.C4683A p.P1561P TAACCCCTCTTGG . 100.0 21.0 79.0 0.0 . 357 . . Atlas-SNP ADD2 119 hgsc.bcm.edu hg19 2 70933425 70933425 + Missense_Mutation SNP G G T rs373392326 alternate_allele TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ADD2 NM_001185055 exon2 c.C164A p.A55E AGGTCCGCCGCCC . 74.0 31.0 104.0 0.0 . 261 . . Atlas-SNP ACOXL 55289 hgsc.bcm.edu hg19 2 111556210 111556210 + Silent SNP T T C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ACOXL NM_001142807 exon6 c.T369C p.C123C GCCGTGTGAAAAT . 48.0 17.0 75.0 0.0 . 93 . . Atlas-SNP ACVR2A 92 hgsc.bcm.edu hg19 2 148684674 148684674 + Missense_Mutation SNP T T C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 ACVR2A,NS,carcinoma,0,1 ACVR2A NM_001616 exon11 c.T1373C p.I458T AAACCATTGAAGA . 73.0 18.0 121.0 1.0 . 125 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179517415 179517415 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . TTN NM_001267550 exon201 c.C39008A p.A13003D GGAGGAGCCGAGG . 52.0 20.0 80.0 0.0 . 18412 . . Atlas-SNP CCDC141 285025 hgsc.bcm.edu hg19 2 179701999 179701999 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 CCDC141_ENST00000420890,NS,malignant_melanoma,0,2 CCDC141 NM_173648 exon23 c.G3947T p.S1316I TCAGCACTGATTC . 81.0 28.0 117.0 0.0 . 362 . . Atlas-SNP COL3A1 1281 hgsc.bcm.edu hg19 2 189850437 189850437 + Missense_Mutation SNP G G C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . COL3A1 NM_000090 exon4 c.G380C p.G127A TTCCAGGACAACC . 192.0 74.0 232.0 0.0 . 292 . . Atlas-SNP ESPNL 339768 hgsc.bcm.edu hg19 2 239010624 239010624 + Missense_Mutation SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ESPNL NM_194312 exon2 c.C337T p.R113C GCCGCCCGTTTTG . 46.0 18.0 59.0 0.0 . 63 . . Atlas-SNP HDLBP 3069 hgsc.bcm.edu hg19 2 242202212 242202212 + Missense_Mutation SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . HDLBP NM_001243900 exon6 c.G472A p.D158N CTTGGTCTTTGGC . 96.0 38.0 130.0 0.0 . 118 . . Atlas-SNP SCN10A 6336 hgsc.bcm.edu hg19 3 38743417 38743417 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . SCN10A NM_006514 exon26 c.G4570T p.V1524F TCATGACACATTC . 97.0 28.0 111.0 0.0 . 359 . . Atlas-SNP CCDC13 152206 hgsc.bcm.edu hg19 3 42750569 42750569 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . CCDC13 NM_144719 exon16 c.G2051T p.G684V TCCTTTCCCCGCA . 60.0 19.0 82.0 0.0 . 71 . . Atlas-SNP CCDC71 64925 hgsc.bcm.edu hg19 3 49201424 49201424 + Missense_Mutation SNP T T C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . CCDC71 NM_022903 exon2 c.A218G p.Y73C GAACTATAGCCAT . 116.0 44.0 164.0 0.0 . 33 . . Atlas-SNP RNF123 63891 hgsc.bcm.edu hg19 3 49744294 49744294 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . RNF123 NM_022064 exon26 c.G2459T p.R820L TGAGCCGCCGTCT . 92.0 25.0 115.0 0.0 . 100 . . Atlas-SNP NPHP3 27031 hgsc.bcm.edu hg19 3 132438610 132438610 + Missense_Mutation SNP T T G novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . NPHP3 NM_153240 exon2 c.A458C p.Q153P ATTGCTTGGTATT . 64.0 28.0 107.0 0.0 . 110 . . Atlas-SNP SMC4 10051 hgsc.bcm.edu hg19 3 160134114 160134114 + Nonsense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . SMC4 NM_005496 exon9 c.G1348T p.E450X GCCCTCGAGAAGG . 306.0 119.0 374.0 0.0 . 135 . . Atlas-SNP KLHL6 89857 hgsc.bcm.edu hg19 3 183210427 183210427 + Silent SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . KLHL6 NM_130446 exon6 c.C1419A p.I473I TCCCCCGATCACA . 118.0 31.0 160.0 0.0 . 100 . . Atlas-SNP TMPRSS11BNL 401136 hgsc.bcm.edu hg19 4 69057145 69057145 + Silent SNP A A G novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . TMPRSS11BNL NM_001129907 exon3 c.T222C p.L74L TTGGCTAAGATAG . 42.0 8.0 50.0 0.0 . 4 . . Atlas-SNP PLEKHG4B 153478 hgsc.bcm.edu hg19 5 143613 143613 + Silent SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . PLEKHG4B NM_052909 exon3 c.C738A p.I246I TAGCATCCCCAGG . 64.0 15.0 74.0 0.0 . 167 . . Atlas-SNP SLC6A3 6531 hgsc.bcm.edu hg19 5 1411361 1411361 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 SLC6A3,colon,carcinoma,0,2 SLC6A3 NM_001044 exon9 c.C1266A p.S422R CACGGCGCTGTCG . 41.0 26.0 54.0 0.0 . 102 . . Atlas-SNP EGFLAM 133584 hgsc.bcm.edu hg19 5 38438475 38438475 + Silent SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . EGFLAM NM_001205301 exon17 c.C2382T p.A794A TTGTGCCCATGGG . 177.0 104.0 151.0 0.0 . 302 . . Atlas-SNP PTGER4 5734 hgsc.bcm.edu hg19 5 40692406 40692406 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . PTGER4 NM_000958 exon3 c.C1393A p.P465T GCTGGGCCTGCCC . 111.0 30.0 114.0 0.0 . 49 . . Atlas-SNP XRCC4 7518 hgsc.bcm.edu hg19 5 82406962 82406962 + Silent SNP G G C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . XRCC4 NM_003401 exon3 c.G255C p.T85T ATACACGTTTAAT . 93.0 20.0 111.0 0.0 . 37 . . Atlas-SNP PCDHA8 56140 hgsc.bcm.edu hg19 5 140222692 140222692 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . PCDHA8 NM_031856 exon1 c.G1786T p.A596S GTGCGCGCAGTGG . 42.0 21.0 64.0 0.0 . 366 . . Atlas-SNP GEMIN5 25929 hgsc.bcm.edu hg19 5 154287212 154287212 + Silent SNP T T C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . GEMIN5 NM_015465 exon16 c.A2334G p.S778S TTGGTCTGACACA . 131.0 44.0 172.0 0.0 . 120 . . Atlas-SNP COL23A1 91522 hgsc.bcm.edu hg19 5 177669082 177669082 + Silent SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . COL23A1 NM_173465 exon27 c.C1542A p.G514G CGGCTCGCCCTTC . 46.0 8.0 53.0 0.0 . 47 . . Atlas-SNP GNMT 27232 hgsc.bcm.edu hg19 6 42928679 42928679 + Silent SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . GNMT NM_018960 exon1 c.C174T p.C58C CGGCTGCCAGCGG . 24.0 10.0 17.0 0.0 . 13 . . Atlas-SNP DLK2 65989 hgsc.bcm.edu hg19 6 43418725 43418725 + Missense_Mutation SNP T T A rs80187636 bycluster;alternate_allele TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . DLK2 NM_023932 exon6 c.A704T p.D235V AGGCAGTCGAAGT . 114.0 50.0 102.0 0.0 . 22 . . Atlas-SNP CASP8AP2 9994 hgsc.bcm.edu hg19 6 90577673 90577673 + Missense_Mutation SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . CASP8AP2 NM_001137667 exon8 c.G4664A p.G1555D CTTCTGGCCTTAA . 68.0 21.0 84.0 0.0 . 108 . . Atlas-SNP ESR1 2099 hgsc.bcm.edu hg19 6 152129176 152129176 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ESR1 NM_000125 exon1 c.C129A p.Y43X GGTGTACCTGGAC . 62.0 26.0 57.0 0.0 . 94 . . Atlas-SNP EZR 7430 hgsc.bcm.edu hg19 6 159210363 159210363 + Missense_Mutation SNP A A T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . EZR NM_003379 exon2 c.T53A p.F18Y ATTGCAAACTCCA . 126.0 36.0 140.0 0.0 . 44 . . Atlas-SNP MAP3K4 4216 hgsc.bcm.edu hg19 6 161507445 161507445 + Nonsense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . MAP3K4 NM_006724 exon8 c.G2407T p.E803X CTGAAGGAGCTCT . 95.0 34.0 80.0 0.0 . 364 . . Atlas-SNP AP5Z1 9907 hgsc.bcm.edu hg19 7 4825905 4825905 + Missense_Mutation SNP A A T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . . NM_014855 exon10 c.A1157T p.E386V ACTCGGAAGCCGT . 73.0 30.0 64.0 0.0 . . . . Atlas-SNP IGF2BP3 10643 hgsc.bcm.edu hg19 7 23509624 23509624 + Nonsense_Mutation SNP T T A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . IGF2BP3 NM_006547 exon1 c.A106T p.K36X CAGTCTTCACCAG . 80.0 30.0 87.0 0.0 . 71 . . Atlas-SNP AMPH 273 hgsc.bcm.edu hg19 7 38457451 38457451 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . AMPH NM_001635 exon17 c.G1372T p.A458S CCTCAGCCCGAGT . 67.0 19.0 74.0 0.0 . 157 . . Atlas-SNP NPTX2 4885 hgsc.bcm.edu hg19 7 98256508 98256508 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . NPTX2 NM_002523 exon4 c.G920T p.G307V GTGACGGCAAGTG . 64.0 30.0 64.0 0.0 . 45 . . Atlas-SNP DGKI 9162 hgsc.bcm.edu hg19 7 137080389 137080389 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . DGKI NM_004717 exon33 c.G3036T p.Q1012H CAGAAGCTGGCAC . 142.0 37.0 132.0 0.0 . 335 . . Atlas-SNP TPK1 27010 hgsc.bcm.edu hg19 7 144150676 144150676 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . TPK1 NM_022445 exon9 c.G694T p.D232Y GGTGGTCAGTTTC . 122.0 29.0 119.0 0.0 . 41 . . Atlas-SNP NOS3 4846 hgsc.bcm.edu hg19 7 150696315 150696315 + Missense_Mutation SNP G G C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . NOS3 NM_001160111 exon8 c.G994C p.A332P TGGTACGCCCTCC . 51.0 32.0 42.0 0.0 . 131 . . Atlas-SNP POLR3D 661 hgsc.bcm.edu hg19 8 22105780 22105780 + Nonsense_Mutation SNP G G T rs199704064 bycluster;by1000genomes;alternate_allele TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . POLR3D NM_001722 exon5 c.G475T p.E159X ATGCTGGAGAAGG . 966.0 46.0 117.0 0.0 . 26 . G|1.000;A|0.000 Atlas-SNP FER1L6 654463 hgsc.bcm.edu hg19 8 125074249 125074249 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . FER1L6 NM_001039112 exon25 c.G3304T p.V1102L ACACAGGTGGATG . 268.0 213.0 111.0 0.0 . 268 . . Atlas-SNP COL22A1 169044 hgsc.bcm.edu hg19 8 139737668 139737668 + Missense_Mutation SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 COL22A1,mucosal,malignant_melanoma,0,1 COL22A1 NM_152888 exon24 c.C2155T p.P719S CACCAGGGGGTCC . 212.0 10.0 92.0 0.0 . 390 . . Atlas-SNP KCNK9 51305 hgsc.bcm.edu hg19 8 140631020 140631020 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . KCNK9 NM_016601 exon2 c.C606A p.F202L GTCCCCGAACCCA . 283.0 214.0 93.0 0.0 . 100 . . Atlas-SNP SCRIB 23513 hgsc.bcm.edu hg19 8 144891811 144891811 + Silent SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . SCRIB NM_015356 exon14 c.C1608T p.P536P GCCCTCGGGCTCA . 121.0 94.0 51.0 0.0 . 192 . . Atlas-SNP SMARCA2 6595 hgsc.bcm.edu hg19 9 2097384 2097384 + Splice_Site SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . SMARCA2 NM_003070 exon21 c.2992-1G>T . TTCTTAGGGGAAA . 84.0 38.0 50.0 0.0 . 313 . . Atlas-SNP SMARCA2 6595 hgsc.bcm.edu hg19 9 2097385 2097385 + Missense_Mutation SNP G G C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . SMARCA2 NM_139045 exon21 c.G2992C p.G998R TCTTAGGGGAAAG . 84.0 38.0 50.0 0.0 . 313 . . Atlas-SNP KIAA2026 158358 hgsc.bcm.edu hg19 9 5923025 5923025 + Silent SNP A A G novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . KIAA2026 NM_001017969 exon8 c.T2971C p.L991L AATCCAATGAGGC . 167.0 61.0 146.0 0.0 . 231 . . Atlas-SNP VCP 7415 hgsc.bcm.edu hg19 9 35068346 35068346 + Missense_Mutation SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . VCP NM_007126 exon2 c.G31A p.D11N ATAGGTCATCACC . 93.0 34.0 57.0 0.0 . 64 . . Atlas-SNP KIAA1958 158405 hgsc.bcm.edu hg19 9 115421771 115421771 + Missense_Mutation SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . KIAA1958 NM_133465 exon4 c.G1573A p.A525T TCGGGCGCGCGTT . 159.0 69.0 117.0 0.0 . 52 . . Atlas-SNP MRPS2 51116 hgsc.bcm.edu hg19 9 138392921 138392921 + Missense_Mutation SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . MRPS2 NM_016034 exon2 c.C121T p.L41F AGGACGCTTGGAA . 89.0 29.0 68.0 0.0 . 17 . . Atlas-SNP PTGDS 5730 hgsc.bcm.edu hg19 9 139873558 139873558 + Silent SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . PTGDS NM_000954 exon2 c.C228A p.G76G TGGTGGCCTCAAC . 79.0 28.0 67.0 0.0 . 15 . . Atlas-SNP FAM208B 54906 hgsc.bcm.edu hg19 10 5803296 5803296 + Missense_Mutation SNP T T C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . . NM_017782 exon19 c.T7036C p.F2346L AAGTCATTTCAGA . 35.0 13.0 54.0 0.0 . . . . Atlas-SNP ITIH5 80760 hgsc.bcm.edu hg19 10 7679202 7679202 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 ITIH5_ENST00000397145,right_upper_lobe,carcinoma,0,2 ITIH5 NM_001001851 exon5 c.G641T p.G214V CCGCGCCCACTGC . 37.0 15.0 51.0 1.0 . 343 . . Atlas-SNP FRMPD2 143162 hgsc.bcm.edu hg19 10 49450281 49450281 + Missense_Mutation SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 FRMPD2,NS,NS,0,1 FRMPD2 NM_001018071 exon5 c.G490A p.E164K ACACTTCTTTCTC . 112.0 40.0 178.0 0.0 . 157 . . Atlas-SNP TET1 80312 hgsc.bcm.edu hg19 10 70405127 70405127 + Missense_Mutation SNP A A G novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . TET1 NM_030625 exon4 c.A2641G p.M881V TCGTTAATGAAAG . 62.0 24.0 71.0 0.0 . 255 . . Atlas-SNP CHST3 9469 hgsc.bcm.edu hg19 10 73767615 73767615 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . CHST3 NM_004273 exon3 c.C826A p.R276S GCGGTGCGCATCC . 25.0 10.0 19.0 0.0 . 36 . . Atlas-SNP SLC16A12 387700 hgsc.bcm.edu hg19 10 91196032 91196032 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . SLC16A12 NM_213606 exon7 c.G1073T p.G358V TCCATTCCCACGG . 80.0 37.0 122.0 0.0 . 40 . . Atlas-SNP NEURL 9148 hgsc.bcm.edu hg19 10 105350084 105350084 + Nonsense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . NEURL NM_004210 exon6 c.C1680A p.C560X CATCTGCCGCCGC . 63.0 17.0 77.0 0.0 . 38 . . Atlas-SNP SORCS1 114815 hgsc.bcm.edu hg19 10 108431023 108431023 + Missense_Mutation SNP A A G novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . SORCS1 NM_001206572 exon16 c.T2161C p.C721R AGACACAGGGTTC . 83.0 26.0 129.0 0.0 . 534 . . Atlas-SNP CTBP2 1488 hgsc.bcm.edu hg19 10 126715003 126715003 + Silent SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . CTBP2 NM_022802 exon1 c.C1326T p.P442P AGGGGTGGGAGAG . 99.0 44.0 117.0 0.0 . 100 . . Atlas-SNP OR51G1 79324 hgsc.bcm.edu hg19 11 4945191 4945191 + Missense_Mutation SNP C C A rs148836962 bycluster;by1000genomes;alternate_allele TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . OR51G1 NM_001005237 exon1 c.G379T p.A127S AGACGGCCACGTA . 104.0 26.0 103.0 0.0 . 74 . C|0.999;T|0.001 Atlas-SNP IGSF22 283284 hgsc.bcm.edu hg19 11 18743087 18743087 + Silent SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . IGSF22 NM_173588 exon4 c.C373T p.L125L CCTTCAGCACGTG . 101.0 30.0 83.0 0.0 . 211 . . Atlas-SNP FSHB 2488 hgsc.bcm.edu hg19 11 30255242 30255242 + Silent SNP A A T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . FSHB NM_000510 exon3 c.A285T p.P95P ATACCCAGTGGCC . 152.0 32.0 117.0 0.0 . 28 . . Atlas-SNP ABTB2 25841 hgsc.bcm.edu hg19 11 34378765 34378765 + Silent SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ABTB2 NM_145804 exon1 c.C366T p.A122A CGCCTCGGCGGAG . 19.0 8.0 7.0 0.0 . 101 . . Atlas-SNP PACSIN3 29763 hgsc.bcm.edu hg19 11 47201773 47201773 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . PACSIN3 NM_016223 exon6 c.G567T p.Q189H CCGTTCCTGCAGT . 30.0 13.0 23.0 0.0 . 28 . . Atlas-SNP ZFP91 80829 hgsc.bcm.edu hg19 11 58384203 58384203 + Missense_Mutation SNP A A G novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ZFP91 NM_053023 exon10 c.A1117G p.I373V GATTATATCTGTG . 102.0 21.0 81.0 0.0 . 66 . . Atlas-SNP MPEG1 219972 hgsc.bcm.edu hg19 11 58980026 58980026 + Missense_Mutation SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . MPEG1 NM_001039396 exon1 c.G313A p.A105T AATTTGCCCAGGA . 83.0 7.0 84.0 0.0 . 72 . . Atlas-SNP TECTA 7007 hgsc.bcm.edu hg19 11 120996428 120996428 + Missense_Mutation SNP G G A rs370652301 TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . TECTA NM_005422 exon7 c.G1621A p.V541M ACTGTCGTGGACC . 77.0 11.0 88.0 0.0 . 329 . . Atlas-SNP OR4D5 219875 hgsc.bcm.edu hg19 11 123811018 123811018 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . OR4D5 NM_001001965 exon1 c.G695T p.G232V GGGAGGGCCGCAG . 143.0 35.0 145.0 0.0 . 94 . . Atlas-SNP PDZRN4 29951 hgsc.bcm.edu hg19 12 41966302 41966302 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . PDZRN4 NM_001164595 exon10 c.C1721A p.A574D ATGCAGCCGAGGA . 161.0 81.0 200.0 1.0 . 346 . . Atlas-SNP KRT76 51350 hgsc.bcm.edu hg19 12 53170525 53170525 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . KRT76 NM_015848 exon1 c.G551T p.R184L TGTTCCCGCTCCT . 116.0 38.0 136.0 0.0 . 72 . . Atlas-SNP KRT4 3851 hgsc.bcm.edu hg19 12 53207647 53207647 + Missense_Mutation SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . KRT4 NM_002272 exon1 c.G196A p.A66T ACCCAGCCACACT . 70.0 38.0 93.0 0.0 . 110 . . Atlas-SNP DTX3 196403 hgsc.bcm.edu hg19 12 58002913 58002913 + Missense_Mutation SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . DTX3 NM_178502 exon7 c.C1022T p.A341V TGAGAGCGAAGGG . 87.0 38.0 94.0 0.0 . 27 . . Atlas-SNP SYT1 6857 hgsc.bcm.edu hg19 12 79689884 79689884 + Silent SNP C C T rs369758844 TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 SYT1,NS,NS,0,1 SYT1 NM_001135805 exon8 c.C510T p.P170P ACTGCCCGCCTTG . 71.0 28.0 107.0 1.0 . 70 . . Atlas-SNP PTPRQ 374462 hgsc.bcm.edu hg19 12 80887176 80887176 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . PTPRQ NM_001145026 exon7 c.C966A p.S322R TAACAGCCATCCA . 77.0 21.0 78.0 0.0 . 119 . . Atlas-SNP STAB2 55576 hgsc.bcm.edu hg19 12 104077060 104077060 + Silent SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 STAB2,NS,carcinoma,0,2 STAB2 NM_017564 exon26 c.C2883A p.T961T ACAAACCGGGAAA . 183.0 59.0 141.0 0.0 . 370 . . Atlas-SNP SSH1 54434 hgsc.bcm.edu hg19 12 109192797 109192797 + Missense_Mutation SNP T T C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . SSH1 NM_001161331 exon12 c.A1361G p.Y454C CCTTCATACTCAG . 60.0 18.0 55.0 0.0 . 144 . . Atlas-SNP EP400 57634 hgsc.bcm.edu hg19 12 132445446 132445446 + Silent SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . EP400 NM_015409 exon2 c.G282T p.L94L CCCACTGCCGCTC . 245.0 126.0 304.0 1.0 . 370 . . Atlas-SNP RNF17 56163 hgsc.bcm.edu hg19 13 25416232 25416232 + Missense_Mutation SNP C C T rs140457030 bycluster TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . RNF17 NM_001184993 exon19 c.C2536T p.P846S GGTGCTCCTGAAA . 63.0 20.0 78.0 0.0 . 259 . C|1.000;T|0.000 Atlas-SNP CCDC168 643677 hgsc.bcm.edu hg19 13 103398453 103398453 + Missense_Mutation SNP C C T rs141118373 bycluster;by1000genomes;alternate_allele TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . . NM_001146197 exon4 c.G4594A p.G1532S AAGGACCCATTTG . 81.0 25.0 84.0 0.0 . . . C|0.991;A|0.009 Atlas-SNP PRKD1 5587 hgsc.bcm.edu hg19 14 30100159 30100159 + Silent SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . PRKD1 NM_002742 exon10 c.C1461T p.A487A AGGATTGGCCCCA . 130.0 43.0 188.0 0.0 . 316 . . Atlas-SNP ESR2 2100 hgsc.bcm.edu hg19 14 64727461 64727461 + Silent SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ESR2 NM_001214902 exon4 c.C658A p.R220R CTCTCCGGGAGCC . 39.0 7.0 45.0 0.0 . 82 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105413999 105413999 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . AHNAK2 NM_138420 exon7 c.G7789T p.G2597C TGGGGCCTTTCAG . 183.0 76.0 198.0 0.0 . 719 . . Atlas-SNP GOLGA6L6 727832 hgsc.bcm.edu hg19 15 20740171 20740171 + Silent SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . GOLGA6L6 NM_001145004 exon8 c.C1579A p.R527R GCTCCCGTATCTT . 213.0 72.0 302.0 0.0 . 37 . . Atlas-SNP GABRA5 2558 hgsc.bcm.edu hg19 15 27128577 27128577 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . GABRA5 NM_001165037 exon6 c.C370A p.L124I AACCTCCTTGCCA . 89.0 40.0 119.0 0.0 . 127 . . Atlas-SNP DUOX1 53905 hgsc.bcm.edu hg19 15 45437120 45437120 + Missense_Mutation SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . DUOX1 NM_017434 exon19 c.C2164T p.R722W GAAGAGCGGCAGG . 59.0 25.0 84.0 0.0 . 125 . . Atlas-SNP ANKDD1A 348094 hgsc.bcm.edu hg19 15 65208032 65208032 + Missense_Mutation SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 ANKDD1A,NS,carcinoma,0,3 ANKDD1A NM_182703 exon2 c.G71A p.R24H CCGCCCGCCAGAA . 43.0 13.0 57.0 0.0 . 47 . . Atlas-SNP LOXL1 4016 hgsc.bcm.edu hg19 15 74235272 74235272 + Missense_Mutation SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . LOXL1 NM_005576 exon2 c.C1180T p.R394C TCCCTGCGCTGTG . 91.0 29.0 136.0 0.0 . 25 . . Atlas-SNP ISLR 3671 hgsc.bcm.edu hg19 15 74467261 74467261 + Missense_Mutation SNP A A G novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ISLR NM_201526 exon2 c.A62G p.E21G GCCCTGAGCCCTG . 41.0 10.0 57.0 0.0 . 49 . . Atlas-SNP ARID3B 10620 hgsc.bcm.edu hg19 15 74836781 74836781 + Silent SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ARID3B NM_006465 exon2 c.C504T p.V168V TTCTGTCTCCACA . 77.0 27.0 104.0 0.0 . 35 . . Atlas-SNP PDE8A 5151 hgsc.bcm.edu hg19 15 85681082 85681082 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . PDE8A NM_002605 exon22 c.G2438T p.W813L AATACTGGAAAGG . 103.0 36.0 146.0 0.0 . 50 . . Atlas-SNP AGBL1 123624 hgsc.bcm.edu hg19 15 87097615 87097615 + Silent SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . AGBL1 NM_152336 exon20 c.G2703A p.K901K TGATAAGCTAGCA . 61.0 23.0 72.0 0.0 . 151 . . Atlas-SNP SSTR5 6755 hgsc.bcm.edu hg19 16 1129560 1129560 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . SSTR5 NM_001172560 exon2 c.C692A p.A231E GGGCGGCGGGCGT . 63.0 46.0 70.0 0.0 . 36 . . Atlas-SNP ALG1 56052 hgsc.bcm.edu hg19 16 5121883 5121883 + Silent SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ALG1 NM_019109 exon1 c.G33A p.L11L GGCGCTGTGTCTG . 18.0 14.0 29.0 0.0 . 35 . . Atlas-SNP GSG1L 146395 hgsc.bcm.edu hg19 16 27840186 27840186 + Missense_Mutation SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . GSG1L NM_001109763 exon5 c.C754T p.R252C CCTTGCGCTTGTG . 145.0 41.0 159.0 0.0 . 82 . . Atlas-SNP ITGAD 3681 hgsc.bcm.edu hg19 16 31405619 31405619 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ITGAD NM_005353 exon2 c.G94T p.A32S GAGGATGCAGGCG . 104.0 15.0 132.0 0.0 . 154 . . Atlas-SNP ABCC12 94160 hgsc.bcm.edu hg19 16 48119516 48119516 + Silent SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ABCC12 NM_033226 exon27 c.C3816A p.L1272L ATTACGGAGAAGA . 144.0 43.0 191.0 0.0 . 190 . . Atlas-SNP CNTNAP4 85445 hgsc.bcm.edu hg19 16 76592443 76592443 + Missense_Mutation SNP A A G novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . CNTNAP4 NM_138994 exon23 c.A3571G p.I1191V GTTCGCATTTATC . 176.0 52.0 172.0 0.0 . 600 . . Atlas-SNP ADAMTS18 170692 hgsc.bcm.edu hg19 16 77355100 77355100 + Splice_Site SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ADAMTS18 NM_199355 exon16 c.2164-1G>A . CACTAGCTGTGAC . 111.0 34.0 102.0 0.0 . 270 . . Atlas-SNP ADAMTS18 170692 hgsc.bcm.edu hg19 16 77401346 77401346 + Missense_Mutation SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ADAMTS18 NM_199355 exon4 c.G770A p.R257H TTCTTGCGTCGTC . 76.0 32.0 91.0 0.0 . 270 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577534 7577534 + Missense_Mutation SNP C C A rs28934571 bycluster TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 TP53_ENST00000455263,right_lower_lobe,carcinoma,-2,1 TP53 NM_000546 exon7 c.G747T p.R249S GATGGGCCTCCGG . 50.0 22.0 87.0 0.0 . 33396 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7721980 7721980 + Missense_Mutation SNP T T C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . DNAH2 NM_020877 exon69 c.T10556C p.L3519P AGCTGCTGGGCAT . 24.0 13.0 47.0 0.0 . 498 . . Atlas-SNP MYH3 4621 hgsc.bcm.edu hg19 17 10534941 10534941 + Missense_Mutation SNP T T C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . MYH3 NM_002470 exon36 c.A5273G p.K1758R ATGGCCTTCTTGG . 48.0 25.0 122.0 0.0 . 227 . . Atlas-SNP TBX21 30009 hgsc.bcm.edu hg19 17 45820045 45820045 + Silent SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . TBX21 NM_013351 exon2 c.G561A p.V187V GTTTGTGGACGTG . 56.0 7.0 93.0 0.0 . 50 . . Atlas-SNP EVPL 2125 hgsc.bcm.edu hg19 17 74014602 74014602 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . EVPL NM_001988 exon12 c.G1364T p.G455V GTCTCCCCGCCAG . 104.0 32.0 108.0 0.0 . 155 . . Atlas-SNP DUS1L 64118 hgsc.bcm.edu hg19 17 80019565 80019565 + Missense_Mutation SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . DUS1L NM_022156 exon7 c.G626A p.G209E ATGTTCCCGTTAG . 50.0 18.0 81.0 0.0 . 25 . . Atlas-SNP CDH20 28316 hgsc.bcm.edu hg19 18 59217241 59217241 + Missense_Mutation SNP C C A rs373889945 alternate_allele TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . CDH20 NM_031891 exon10 c.C1679A p.S560Y GGAGGTCTGGTTT . 117.0 48.0 95.0 0.0 . 117 . . Atlas-SNP FAM129C 199786 hgsc.bcm.edu hg19 19 17657556 17657556 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . FAM129C NM_001098524 exon14 c.G1709T p.G570V CTGAGGGCATCTA . 42.0 12.0 42.0 0.0 . 110 . . Atlas-SNP ANKRD27 84079 hgsc.bcm.edu hg19 19 33096767 33096767 + Missense_Mutation SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ANKRD27 NM_032139 exon24 c.C2467T p.H823Y GCTCGTGATGGCC . 454.0 292.0 166.0 0.0 . 86 . . Atlas-SNP MLL4 8085 hgsc.bcm.edu hg19 19 36222992 36222992 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . MLL4 NM_014727 exon27 c.G5621T p.R1874L CATCCCGGAGGCC . 218.0 50.0 71.0 0.0 . 229 . . Atlas-SNP MAP4K1 11184 hgsc.bcm.edu hg19 19 39105049 39105049 + Missense_Mutation SNP A A G novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . MAP4K1 NM_007181 exon5 c.T350C p.V117A CGGCAGACATAGC . 206.0 23.0 63.0 0.0 . 165 . . Atlas-SNP ATP1A3 478 hgsc.bcm.edu hg19 19 42492257 42492257 + Missense_Mutation SNP G G T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ATP1A3 NM_001256214 exon4 c.C227A p.A76D TCCCGGGCCAGGA . 63.0 49.0 96.0 0.0 . 117 . . Atlas-SNP HIF3A 64344 hgsc.bcm.edu hg19 19 46825090 46825090 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . HIF3A NM_152795 exon10 c.C1202A p.A401D AGGCTGCCCTGGC . 123.0 68.0 91.0 0.0 . 154 . . Atlas-SNP ARHGAP35 2909 hgsc.bcm.edu hg19 19 47424838 47424838 + Missense_Mutation SNP A A T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . . NM_004491 exon1 c.A2906T p.N969I TGTTTAACTCCCC . 130.0 68.0 111.0 0.0 . . . . Atlas-SNP FAM83E 54854 hgsc.bcm.edu hg19 19 49104612 49104612 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 FAM83E,NS,carcinoma,0,1 FAM83E NM_017708 exon5 c.G1191T p.W397C GGAGCCCCAGGAT . 175.0 38.0 146.0 0.0 . 34 . . Atlas-SNP FAM83E 54854 hgsc.bcm.edu hg19 19 49104613 49104613 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . FAM83E NM_017708 exon5 c.G1190T p.W397L GAGCCCCAGGATT . 176.0 38.0 147.0 0.0 . 34 . . Atlas-SNP ZNF28 7576 hgsc.bcm.edu hg19 19 53302982 53302982 + Missense_Mutation SNP G G C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ZNF28 NM_006969 exon4 c.C2116G p.L706V ATACAAGGTTTGA . 71.0 41.0 73.0 0.0 . 191 . . Atlas-SNP ZNF677 342926 hgsc.bcm.edu hg19 19 53740851 53740851 + Missense_Mutation SNP A A G novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ZNF677 NM_182609 exon5 c.T1129C p.C377R CATTACATTTGTA . 118.0 25.0 122.0 0.0 . 94 . . Atlas-SNP ZNF71 58491 hgsc.bcm.edu hg19 19 57133835 57133835 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 ZNF71,NS,carcinoma,0,1 ZNF71 NM_021216 exon3 c.C1180A p.R394S ACGGGGCGCTCGT . 55.0 28.0 56.0 0.0 . 69 . . Atlas-SNP NCOA6 23054 hgsc.bcm.edu hg19 20 33329288 33329288 + Missense_Mutation SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 NCOA6,NS,haematopoietic_neoplasm,0,3 NCOA6 NM_014071 exon11 c.C4772T p.P1591L GGCAAGGGAGTGG . 130.0 54.0 71.0 0.0 . 219 . . Atlas-SNP GDF5 8200 hgsc.bcm.edu hg19 20 34025505 34025505 + Silent SNP C C G novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . GDF5 NM_000557 exon1 c.G204C p.G68G GGTGGCCCCCCCA . 89.0 38.0 60.0 0.0 . 66 . . Atlas-SNP ZNF831 128611 hgsc.bcm.edu hg19 20 57768554 57768554 + Missense_Mutation SNP T T C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ZNF831 NM_178457 exon1 c.T2480C p.V827A TGAAAGTGGAGGA . 140.0 62.0 81.0 0.0 . 287 . . Atlas-SNP EVA1C 59271 hgsc.bcm.edu hg19 21 33829933 33829933 + Missense_Mutation SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . . NM_058187 exon3 c.G386A p.R129Q ACCAGCGGGCCTG . 160.0 28.0 205.0 0.0 . . . . Atlas-SNP DSCAM 1826 hgsc.bcm.edu hg19 21 42064797 42064797 + Silent SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . DSCAM NM_001271534 exon3 c.C447T p.S149S CACCGAGGAGGGG . 64.0 19.0 104.0 0.0 . 347 . . Atlas-SNP TRPM2 7226 hgsc.bcm.edu hg19 21 45820191 45820191 + Missense_Mutation SNP T T A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . TRPM2 NM_003307 exon15 c.T2258A p.L753Q ATGGGCTGTGGCG . 47.0 16.0 53.0 0.0 . 196 . . Atlas-SNP ZNF74 7625 hgsc.bcm.edu hg19 22 20749677 20749677 + Missense_Mutation SNP C C G novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 ZNF74,NS,carcinoma,0,1 ZNF74 NM_003426 exon2 c.C89G p.S30W ATATATCGGGTTG . 138.0 62.0 161.0 0.0 . 54 . . Atlas-SNP MYO18B 84700 hgsc.bcm.edu hg19 22 26298603 26298603 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . MYO18B NM_032608 exon30 c.C4847A p.A1616D CCCAGGCCCTAGG . 50.0 13.0 66.0 0.0 . 322 . . Atlas-SNP TCF20 6942 hgsc.bcm.edu hg19 22 42608089 42608089 + Missense_Mutation SNP G G C novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . TCF20 NM_181492 exon1 c.C3223G p.P1075A CGTTAGGGTCCCC . 115.0 54.0 101.0 0.0 . 164 . . Atlas-SNP KIAA1644 85352 hgsc.bcm.edu hg19 22 44681337 44681337 + Silent SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 KIAA1644,colon,carcinoma,0,1 KIAA1644 NM_001099294 exon4 c.G570T p.P190P CATCAGCGGTGGG . 130.0 34.0 137.0 1.0 . 39 . . Atlas-SNP PHF21B 112885 hgsc.bcm.edu hg19 22 45279146 45279146 + Missense_Mutation SNP C C A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . PHF21B NM_138415 exon13 c.G1416T p.Q472H GCCCCTCTGGCGG . 38.0 10.0 29.0 0.0 . 61 . . Atlas-SNP CRELD2 79174 hgsc.bcm.edu hg19 22 50312939 50312939 + Missense_Mutation SNP C C T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . CRELD2 NM_024324 exon2 c.C191T p.T64M AAAAGACGCTGTC . 268.0 17.0 182.0 0.0 . 57 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 32834720 32834720 + Missense_Mutation SNP T T A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . DMD NM_004006 exon6 c.A395T p.Q132L GTTTGTTGCAATC . 87.0 56.0 107.0 0.0 . 2127 . . Atlas-SNP NXF3 56000 hgsc.bcm.edu hg19 X 102334693 102334693 + Silent SNP G G A novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . NXF3 NM_022052 exon13 c.C1158T p.A386A TCACGGGGCTGAG . 77.0 58.0 108.0 0.0 . 81 . . Atlas-SNP TATDN3 128387 hgsc.bcm.edu hg19 1 212965299 212965315 + Frame_Shift_Del DEL CTGCCACCTCTCCGCCC CTGCCACCTCTCCGCCC - novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 CTGCCACCTCTCCGCCC CTGCCACCTCTCCGCCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . TATDN3 NM_001042552 exon1 c.35_51del p.12_17del . . 140.0 25.0 180.0 0.0 . 23 . . Atlas-Indel,Pindel MYO1F 4542 hgsc.bcm.edu hg19 19 8619381 8619395 + In_Frame_Del DEL CTCACAGTCGATAAG CTCACAGTCGATAAG - novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 CTCACAGTCGATAAG CTCACAGTCGATAAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . MYO1F NM_012335 exon4 c.293_307del p.98_103del . . 46.0 14.0 55.0 0.0 . 128 . . Atlas-Indel,Pindel TMPRSS13 84000 hgsc.bcm.edu hg19 11 117789435 117789449 + In_Frame_Del DEL GCTGGAGATGCCTGG GCTGGAGATGCCTGG - novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 GCTGGAGATGCCTGG GCTGGAGATGCCTGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . TMPRSS13 NM_001206789 exon2 c.127_141del p.43_47del . . 29.0 11.0 42.0 0.0 . 75 . . Atlas-INDEL POLDIP3 84271 hgsc.bcm.edu hg19 22 42983538 42983538 + Frame_Shift_Del DEL A A - novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . POLDIP3 NM_032311 exon8 c.1063delA p.I355fs . . 124.0 37.0 140.0 0.0 . 58 . . Atlas-Indel,Pindel DDX12P 440081 hgsc.bcm.edu hg19 12 9580257 9580257 + RNA DEL C C - novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . . . . . . . . 338.0 51.0 374.0 0.0 . . . . Atlas-Indel,Pindel ITGAV 3685 hgsc.bcm.edu hg19 2 187455211 187455222 + In_Frame_Del DEL TCGGCTTCGCCG TCGGCTTCGCCG - novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 TCGGCTTCGCCG TCGGCTTCGCCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ITGAV NM_001145000 exon1 c.145_156del p.49_52del . . 175.0 36.0 219.0 0.0 . 124 . . Atlas-Indel,Pindel ZNF829 374899 hgsc.bcm.edu hg19 19 37383281 37383281 + Frame_Shift_Del DEL T T - novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ZNF829 NM_001171979 exon6 c.656delT p.I219fs . . 96.0 15.0 39.0 0.0 . 70 . . Atlas-Indel,Pindel LRRK2 120892 hgsc.bcm.edu hg19 12 40714888 40714889 + Frame_Shift_Ins INS - - T novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . LRRK2 NM_198578 exon35 c.5068_5069insT p.I1690fs . . 74.0 33.0 108.0 0.0 . 763 . . Atlas-Indel,Pindel WIF1 11197 hgsc.bcm.edu hg19 12 65449809 65449854 + Frame_Shift_Del DEL GTAGCCCAGATTGGCAATGTGTATGGGGTACTTACGCTTTGAACAG GTAGCCCAGATTGGCAATGTGTATGGGGTACTTACGCTTTGAACAG - novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 GTAGCCCAGATTGGCAATGTGTATGGGGTACTTACGCTTTGAACAG GTAGCCCAGATTGGCAATGTGTATGGGGTACTTACGCTTTGAACAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . WIF1 NM_007191 exon8 c.913_922del p.305_308del . . 55.0 14.0 65.0 0.0 . 96 . . Pindel ADPRHL1 113622 hgsc.bcm.edu hg19 13 114107605 114107632 + Frame_Shift_Del DEL GCGAGAGTACGAGGTGGTCCAGGCCCCC GCGAGAGTACGAGGTGGTCCAGGCCCCC - novel TCGA-CC-A7II-01A-11D-A33K-10 TCGA-CC-A7II-10A-01D-A33K-10 GCGAGAGTACGAGGTGGTCCAGGCCCCC GCGAGAGTACGAGGTGGTCCAGGCCCCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 38404863-430b-43e1-9349-5e50adbe47bd 67f74191-95ad-4192-a479-4cd21b1cdfa4 . ADPRHL1 NM_138430 exon1 c.122_149del p.41_50del . . 97.0 15.0 114.0 0.0 . 30 . . Pindel