Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ESPN 83715 hgsc.bcm.edu hg19 1 6520166 6520166 + Missense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ESPN NM_031475 exon13 c.G2525T p.R842L GGCAGCGACAGGT . 203.0 38.0 164.0 0.0 . 32 . . Atlas-SNP MAST2 23139 hgsc.bcm.edu hg19 1 46485312 46485312 + Silent SNP G G A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . MAST2 NM_015112 exon11 c.G1233A p.Q411Q GATGCAGCTGGTG . 157.0 26.0 188.0 0.0 . 136 . . Atlas-SNP C1orf173 127254 hgsc.bcm.edu hg19 1 75037157 75037157 + Nonsense_Mutation SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . C1orf173 NM_001002912 exon14 c.G4237T p.E1413X CTTCCTCCCCACT . 299.0 41.0 358.0 0.0 . 380 . . Atlas-SNP NEXN 91624 hgsc.bcm.edu hg19 1 78407772 78407772 + Missense_Mutation SNP T T A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . NEXN NM_144573 exon12 c.T1538A p.M513K TGAATATGAAAGC . 299.0 43.0 339.0 0.0 . 77 . . Atlas-SNP S100A7A 338324 hgsc.bcm.edu hg19 1 153390678 153390678 + Missense_Mutation SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d S100A7A,NS,carcinoma,0,1 S100A7A NM_176823 exon2 c.C120A p.F40L GAACTTCCCCAAT . 446.0 163.0 312.0 1.0 . 24 . . Atlas-SNP RGSL1 353299 hgsc.bcm.edu hg19 1 182458241 182458241 + Nonsense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . RGSL1 NM_001137669 exon8 c.G1621T p.E541X ATGAAGGAAATGG . 270.0 40.0 241.0 0.0 . 111 . . Atlas-SNP IVNS1ABP 10625 hgsc.bcm.edu hg19 1 185274712 185274712 + Missense_Mutation SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . IVNS1ABP NM_006469 exon8 c.G721T p.A241S CCTCAGCCTGTCC . 297.0 107.0 259.0 0.0 . 80 . . Atlas-SNP OR2T12 127064 hgsc.bcm.edu hg19 1 248458244 248458244 + Missense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d OR2T12,NS,carcinoma,0,1 OR2T12 NM_001004692 exon1 c.C637A p.L213M AGGACAGGATGAG . 1594.0 243.0 1449.0 2.0 . 113 . . Atlas-SNP EGR4 1961 hgsc.bcm.edu hg19 2 73518960 73518960 + Silent SNP G G A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . EGR4 NM_001965 exon2 c.C1395T p.R465R GCCGCCGCGGCGC . 11.0 7.0 2.0 0.0 . 52 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73677972 73677972 + Nonsense_Mutation SNP C C T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ALMS1 NM_015120 exon8 c.C4315T p.Q1439X TTCTACCAACAGG . 246.0 23.0 304.0 0.0 . 384 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73800105 73800105 + Missense_Mutation SNP C C T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ALMS1 NM_015120 exon16 c.C11098T p.H3700Y TCTCATCATCGAG . 153.0 18.0 138.0 0.0 . 384 . . Atlas-SNP MYO7B 4648 hgsc.bcm.edu hg19 2 128335798 128335798 + Nonsense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . MYO7B NM_001080527 exon9 c.G940T p.E314X GACTCCGAGAGCT . 171.0 24.0 140.0 0.0 . 359 . . Atlas-SNP MYO3B 140469 hgsc.bcm.edu hg19 2 171260816 171260816 + Silent SNP G G T rs201316029 bycluster;alternate_allele TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . MYO3B NM_001083615 exon20 c.G2337T p.P779P CCGCCCGCTCTTG . 210.0 41.0 225.0 0.0 . 320 . G|0.999;A|0.001 Atlas-SNP USP19 10869 hgsc.bcm.edu hg19 3 49151699 49151699 + Missense_Mutation SNP G G C novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . USP19 NM_001199161 exon16 c.C2311G p.P771A GAAACGGGTCAAA . 200.0 39.0 132.0 0.0 . 158 . . Atlas-SNP STAB1 23166 hgsc.bcm.edu hg19 3 52546358 52546358 + Missense_Mutation SNP C C T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . STAB1 NM_015136 exon27 c.C2885T p.A962V CCCAGGCCACCTG . 68.0 9.0 75.0 0.0 . 178 . . Atlas-SNP MECOM 2122 hgsc.bcm.edu hg19 3 168819859 168819859 + Silent SNP G G A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . MECOM NM_004991 exon11 c.C2760T p.R920R GGTATAGCGCTCC . 153.0 24.0 172.0 0.0 . 216 . . Atlas-SNP PPBP 5473 hgsc.bcm.edu hg19 4 74853684 74853684 + Missense_Mutation SNP G G T rs201755460 alternate_allele TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . PPBP NM_002704 exon1 c.C137A p.A46E CCTTTCGCCAAGT . 229.0 51.0 291.0 0.0 . 27 . . Atlas-SNP GFM2 84340 hgsc.bcm.edu hg19 5 74047313 74047313 + Missense_Mutation SNP C C T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . GFM2 NM_032380 exon6 c.G310A p.D104N CATCATCAACATC . 188.0 24.0 168.0 0.0 . 38 . . Atlas-SNP PCDHA11 56138 hgsc.bcm.edu hg19 5 140250371 140250371 + Silent SNP G G A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . PCDHA11 NM_018902 exon1 c.G1683A p.A561A CAACGCGCCGGCA . 104.0 16.0 105.0 0.0 . 209 . . Atlas-SNP PPARGC1B 133522 hgsc.bcm.edu hg19 5 149213132 149213132 + Missense_Mutation SNP C C T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . PPARGC1B NM_133263 exon5 c.C1496T p.P499L TGGTCCCCTCGGA . 102.0 21.0 89.0 0.0 . 74 . . Atlas-SNP CYFIP2 26999 hgsc.bcm.edu hg19 5 156768087 156768087 + Silent SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . CYFIP2 NM_001037332 exon23 c.G2595T p.R865R TGTGCGGACTGCC . 251.0 42.0 245.0 0.0 . 354 . . Atlas-SNP CUL7 9820 hgsc.bcm.edu hg19 6 43012996 43012996 + Missense_Mutation SNP C C T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . CUL7 NM_001168370 exon15 c.G3259A p.D1087N TGCGGTCCTCTGC . 125.0 9.0 112.0 0.0 . 133 . . Atlas-SNP HDAC9 9734 hgsc.bcm.edu hg19 7 18633535 18633535 + Missense_Mutation SNP G G A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . HDAC9 NM_001204144 exon8 c.G664A p.A222T AGGGCTGCCCACC . 146.0 23.0 216.0 0.0 . 560 . . Atlas-SNP ZP3 7784 hgsc.bcm.edu hg19 7 76062261 76062261 + Missense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ZP3 NM_001110354 exon3 c.G449T p.S150I TGAGCAGCCAGGC . 103.0 19.0 95.0 0.0 . 32 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82435139 82435139 + Missense_Mutation SNP G G A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . PCLO NM_033026 exon21 c.C14798T p.P4933L TTGGGAGGCTTTG . 187.0 17.0 216.0 0.0 . 1506 . . Atlas-SNP EXOC4 60412 hgsc.bcm.edu hg19 7 133314872 133314872 + Missense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . EXOC4 NM_021807 exon10 c.G1492T p.V498F ATTACCGTCATAT . 140.0 21.0 184.0 0.0 . 118 . . Atlas-SNP EBF2 64641 hgsc.bcm.edu hg19 8 25898461 25898461 + Missense_Mutation SNP T T G novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . EBF2 NM_022659 exon3 c.A346C p.S116R CGTTGCTGTAGAG . 647.0 62.0 562.0 0.0 . 138 . . Atlas-SNP STK3 6788 hgsc.bcm.edu hg19 8 99560362 99560362 + Missense_Mutation SNP T T A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . STK3 NM_001256312 exon11 c.A1060T p.M354L TCACCATGGTGTG . 152.0 34.0 188.0 0.0 . 47 . . Atlas-SNP GRHL2 79977 hgsc.bcm.edu hg19 8 102611376 102611376 + Silent SNP G G A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d GRHL2,colon,carcinoma,0,1 GRHL2 NM_024915 exon8 c.G1095A p.A365A AGAGGCGAAGGTG . 298.0 60.0 304.0 0.0 . 68 . . Atlas-SNP COL22A1 169044 hgsc.bcm.edu hg19 8 139838990 139838990 + Missense_Mutation SNP C C A rs372910376 alternate_allele TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . COL22A1 NM_152888 exon6 c.G880T p.A294S CAAAGGCGTACTC . 138.0 35.0 121.0 0.0 . 390 . . Atlas-SNP ANKRD18B 441459 hgsc.bcm.edu hg19 9 33567266 33567266 + Missense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ANKRD18B NM_001244752 exon14 c.G2719T p.A907S GCCTTTGCAGTAG . 436.0 59.0 372.0 0.0 . 46 . . Atlas-SNP PFKP 5214 hgsc.bcm.edu hg19 10 3146084 3146084 + Missense_Mutation SNP G G A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . PFKP NM_002627 exon5 c.G568A p.A190T GACTCCGCCCTGC . 72.0 17.0 60.0 0.0 . 182 . . Atlas-SNP OR52R1 119695 hgsc.bcm.edu hg19 11 4825512 4825512 + Silent SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d OR52R1,NS,malignant_melanoma,-1,4 OR52R1 NM_001005177 exon1 c.G99T p.P33P ACAGAACGGAAAG . 132.0 20.0 148.0 1.0 . 81 . . Atlas-SNP ZBED5 58486 hgsc.bcm.edu hg19 11 10875696 10875696 + Missense_Mutation SNP C C G novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ZBED5 NM_021211 exon3 c.G797C p.R266T TTCAGTCTACAAA . 215.0 12.0 216.0 0.0 . 50 . . Atlas-SNP LRRC4C 57689 hgsc.bcm.edu hg19 11 40137653 40137653 + Silent SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . LRRC4C NM_001258419 exon7 c.C190A p.R64R TTTTCCGAACACA . 155.0 20.0 157.0 0.0 . 190 . . Atlas-SNP OR4A15 81328 hgsc.bcm.edu hg19 11 55135486 55135486 + Silent SNP T T C novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . OR4A15 NM_001005275 exon1 c.T127C p.L43L ATCCTCTTAGGGC . 220.0 35.0 262.0 0.0 . 161 . . Atlas-SNP OR5T2 219464 hgsc.bcm.edu hg19 11 55999981 55999981 + Silent SNP A A C novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d OR5T2,NS,carcinoma,0,4 OR5T2 NM_001004746 exon1 c.T681G p.S227S AGAATAAGAAATA . 658.0 95.0 655.0 1.0 . 107 . . Atlas-SNP NXPE4 54827 hgsc.bcm.edu hg19 11 114453455 114453455 + Missense_Mutation SNP G G A rs111330181 bycluster TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d FAM55D,right_upper_lobe,carcinoma,0,2 . NM_001077639 exon3 c.C385T p.R129C TCCTGCGTCCCAA . 443.0 59.0 456.0 0.0 . . . A|1.000;|0.000 Atlas-SNP SLC37A4 2542 hgsc.bcm.edu hg19 11 118896705 118896705 + Missense_Mutation SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . SLC37A4 NM_001467 exon8 c.G956T p.R319L GTTACCCGGAAGA . 134.0 14.0 140.0 0.0 . 19 . . Atlas-SNP ZNF202 7753 hgsc.bcm.edu hg19 11 123598880 123598880 + Missense_Mutation SNP A A G novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ZNF202 NM_003455 exon7 c.T793C p.Y265H AGACATATTCTCC . 238.0 13.0 227.0 0.0 . 72 . . Atlas-SNP ZNF202 7753 hgsc.bcm.edu hg19 11 123600353 123600353 + Nonsense_Mutation SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ZNF202 NM_003455 exon5 c.G583T p.E195X CCTCTTCCTGGTG . 123.0 10.0 140.0 0.0 . 72 . . Atlas-SNP OVCH1 341350 hgsc.bcm.edu hg19 12 29617463 29617463 + Missense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . OVCH1 NM_183378 exon18 c.C2102A p.T701N CATCCGGTCACAG . 142.0 20.0 148.0 0.0 . 195 . . Atlas-SNP KIAA1551 55196 hgsc.bcm.edu hg19 12 32137832 32137832 + Nonsense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . . NM_018169 exon4 c.G3943T p.E1315X TCTTATGAACAAG . 153.0 20.0 118.0 0.0 . . . . Atlas-SNP KIF21A 55605 hgsc.bcm.edu hg19 12 39726715 39726715 + Silent SNP C C G novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . KIF21A NM_001173464 exon19 c.G2682C p.T894T TGCCGGCGTTGGT . 187.0 37.0 177.0 0.0 . 238 . . Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49443882 49443882 + Silent SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . MLL2 NM_003482 exon11 c.G3489T p.V1163V AGGGGTCACAGGG . 157.0 23.0 124.0 0.0 . 1173 . . Atlas-SNP BCDIN3D 144233 hgsc.bcm.edu hg19 12 50236856 50236856 + Silent SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . BCDIN3D NM_181708 exon1 c.G15T p.T5T CAGTTCCGTGGGC . 88.0 16.0 55.0 0.0 . 20 . . Atlas-SNP ALDH1L2 160428 hgsc.bcm.edu hg19 12 105464456 105464456 + Missense_Mutation SNP A A G novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ALDH1L2 NM_001034173 exon3 c.T320C p.F107S GTGCAGAAAGGGA . 335.0 62.0 307.0 0.0 . 71 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124387605 124387605 + Missense_Mutation SNP G G A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . DNAH10 NM_207437 exon56 c.G9406A p.E3136K ATCCTGGAGGCCG . 96.0 19.0 112.0 0.0 . 888 . . Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23904756 23904756 + Missense_Mutation SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . SACS NM_014363 exon10 c.G13259T p.C4420F GGGGGGCATTTTT . 151.0 35.0 129.0 0.0 . 871 . . Atlas-SNP COMMD6 170622 hgsc.bcm.edu hg19 13 76111799 76111799 + Splice_Site SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . COMMD6 NM_203497 exon3 c.54+1G>T . CACCCACCTGGTT . 78.0 13.0 63.0 0.0 . 4 . . Atlas-SNP SLITRK6 84189 hgsc.bcm.edu hg19 13 86370026 86370026 + Missense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . SLITRK6 NM_032229 exon2 c.C618A p.H206Q GCCAATGTGTTCG . 131.0 24.0 120.0 0.0 . 150 . . Atlas-SNP SYT16 83851 hgsc.bcm.edu hg19 14 62551067 62551067 + Missense_Mutation SNP A A T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . SYT16 NM_031914 exon5 c.A1588T p.S530C AAAGGCAGCCATT . 113.0 22.0 80.0 0.0 . 144 . . Atlas-SNP SLC24A4 123041 hgsc.bcm.edu hg19 14 92949118 92949118 + Missense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . SLC24A4 NM_153646 exon13 c.G1350T p.E450D CTGGGAGAAGTTC . 135.0 20.0 146.0 0.0 . 112 . . Atlas-SNP CDC42BPB 9578 hgsc.bcm.edu hg19 14 103430853 103430853 + Missense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . CDC42BPB NM_006035 exon19 c.C2712A p.N904K GGTGAGGTTGGCG . 60.0 13.0 58.0 0.0 . 123 . . Atlas-SNP TSC2 7249 hgsc.bcm.edu hg19 16 2098719 2098719 + Nonsense_Mutation SNP C C T rs137854105 TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . TSC2 NM_001114382 exon2 c.C103T p.Q35X GGTAAACAGACGG . 264.0 59.0 227.0 0.0 . 364 . . Atlas-SNP DPEP2 64174 hgsc.bcm.edu hg19 16 68027109 68027109 + Missense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . DPEP2 NM_022355 exon2 c.C7A p.P3T CGGAGGGCTGCAT . 68.0 17.0 47.0 0.0 . 43 . . Atlas-SNP PLCG2 5336 hgsc.bcm.edu hg19 16 81927388 81927388 + Missense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . PLCG2 NM_002661 exon12 c.G1061T p.R354L GCTGTCGCTGCAT . 74.0 13.0 90.0 0.0 . 276 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577534 7577534 + Missense_Mutation SNP C C A rs28934571 bycluster TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d TP53_ENST00000455263,right_lower_lobe,carcinoma,-2,1 TP53 NM_000546 exon7 c.G747T p.R249S GATGGGCCTCCGG . 172.0 34.0 202.0 2.0 . 33396 . . Atlas-SNP PHF12 57649 hgsc.bcm.edu hg19 17 27251239 27251239 + Missense_Mutation SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . PHF12 NM_020889 exon4 c.G403T p.D135Y CAGTGTCACTGCT . 212.0 48.0 172.0 0.0 . 69 . . Atlas-SNP KRT33B 3884 hgsc.bcm.edu hg19 17 39522752 39522752 + Missense_Mutation SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . KRT33B NM_002279 exon3 c.G558T p.E186D CAGCAGCTCCTCC . 95.0 19.0 128.0 0.0 . 46 . . Atlas-SNP GOSR2 9570 hgsc.bcm.edu hg19 17 45017921 45017921 + Missense_Mutation SNP G G T rs147434599 bycluster;byfrequency;alternate_allele TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . GOSR2 NM_054022 exon7 c.G584T p.G195V CCCCAGGCACCCA . 56.0 17.0 31.0 0.0 . 38 . G|0.999;C|0.001 Atlas-SNP MTMR4 9110 hgsc.bcm.edu hg19 17 56582859 56582859 + Silent SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . MTMR4 NM_004687 exon11 c.G1077T p.V359V GCTACACACAGCC . 152.0 26.0 121.0 0.0 . 91 . . Atlas-SNP KIAA1328 57536 hgsc.bcm.edu hg19 18 34647292 34647292 + Missense_Mutation SNP G G C novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d KIAA1328,NS,carcinoma,+1,1 KIAA1328 NM_020776 exon7 c.G1016C p.R339P ATTGTCGGCTTTC . 435.0 68.0 538.0 0.0 . 39 . . Atlas-SNP EPG5 57724 hgsc.bcm.edu hg19 18 43460188 43460188 + Missense_Mutation SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d EPG5,NS,carcinoma,0,1 EPG5 NM_020964 exon32 c.G5519T p.S1840I GCGGAGCCTGCCA . 63.0 12.0 53.0 0.0 . 199 . . Atlas-SNP MC4R 4160 hgsc.bcm.edu hg19 18 58039123 58039123 + Missense_Mutation SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . MC4R NM_005912 exon1 c.G460T p.A154S GGAGAGCATAGAA . 99.0 14.0 121.0 0.0 . 49 . . Atlas-SNP SERPINB4 6318 hgsc.bcm.edu hg19 18 61308143 61308143 + Missense_Mutation SNP T T C novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . SERPINB4 NM_002974 exon5 c.A434G p.K145R ATCTTCTTTCGAC . 463.0 77.0 512.0 0.0 . 89 . . Atlas-SNP ZNF407 55628 hgsc.bcm.edu hg19 18 72775861 72775861 + Missense_Mutation SNP C C T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ZNF407 NM_017757 exon8 c.C6184T p.P2062S GTCCATCCCTCAG . 94.0 9.0 74.0 0.0 . 231 . . Atlas-SNP OR7D4 125958 hgsc.bcm.edu hg19 19 9324917 9324917 + Silent SNP C C T rs377419980 alternate_allele TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d OR7D4,NS,carcinoma,0,1 OR7D4 NM_001005191 exon1 c.G597A p.L199L CACATACAAGACA . 186.0 33.0 146.0 0.0 . 66 . . Atlas-SNP LDLR 3949 hgsc.bcm.edu hg19 19 11213382 11213382 + Missense_Mutation SNP G G T rs146675823 alternate_allele TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . LDLR NM_001195800 exon3 c.G233T p.R78L GGGGCCGTGTCAA . 230.0 44.0 230.0 0.0 . 72 . G|1.000;A|0.000 Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 30935048 30935048 + Silent SNP C C T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d ZNF536,right_upper_lobe,carcinoma,0,1 ZNF536 NM_014717 exon2 c.C579T p.R193R TGTGCGCGAGGAG . 50.0 12.0 32.0 0.0 . 424 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38974064 38974064 + Silent SNP G G A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . RYR1 NM_001042723 exon33 c.G4842A p.V1614V GCAGGTGGAGACG . 76.0 13.0 91.0 0.0 . 708 . . Atlas-SNP CEACAM4 1089 hgsc.bcm.edu hg19 19 42132051 42132051 + Missense_Mutation SNP G G T rs199959927 bycluster;by1000genomes;alternate_allele TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . CEACAM4 NM_001817 exon2 c.C348A p.D116E TCCTGCGTCCTCC . 590.0 108.0 540.0 0.0 . 42 . G|0.999;A|0.001 Atlas-SNP SMG9 56006 hgsc.bcm.edu hg19 19 44238560 44238560 + Silent SNP G G T rs368481505 alternate_allele TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . SMG9 NM_019108 exon10 c.C1083A p.T361T GTACTCGGTGCCT . 101.0 5.0 76.0 0.0 . 39 . . Atlas-SNP RSPH6A 81492 hgsc.bcm.edu hg19 19 46318184 46318184 + Missense_Mutation SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . RSPH6A NM_030785 exon1 c.G251T p.G84V TCCATGCCACCCA . 112.0 11.0 77.0 0.0 . 70 . . Atlas-SNP CCDC155 147872 hgsc.bcm.edu hg19 19 49920647 49920647 + Silent SNP C C A rs182291239 bycluster;by1000genomes;alternate_allele TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . CCDC155 NM_144688 exon20 c.C1569A p.I523I ACTGATCCCAGCT . 137.0 30.0 104.0 0.0 . 46 . C|1.000;T|0.000 Atlas-SNP VN1R2 317701 hgsc.bcm.edu hg19 19 53761860 53761860 + Missense_Mutation SNP T T G novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . VN1R2 NM_173856 exon1 c.T232G p.S78A CTTGTCTCTGCAC . 135.0 26.0 90.0 0.0 . 71 . . Atlas-SNP ZNF154 7710 hgsc.bcm.edu hg19 19 58216279 58216279 + Silent SNP A A T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ZNF154 NM_001085384 exon2 c.T102A p.A34A TCTTTGAGCCTCA . 266.0 30.0 314.0 0.0 . 34 . . Atlas-SNP ZNF324B 388569 hgsc.bcm.edu hg19 19 58967236 58967236 + Missense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ZNF324B NM_207395 exon4 c.G925T p.G309C CACAGCGGCGAGA . 158.0 23.0 185.0 0.0 . 58 . . Atlas-SNP GNRH2 2797 hgsc.bcm.edu hg19 20 3025397 3025397 + Missense_Mutation SNP C C T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . GNRH2 NM_001501 exon3 c.C227T p.P76L TGGCTCCCCTGGA . 110.0 12.0 96.0 0.0 . 15 . . Atlas-SNP RALGAPB 57148 hgsc.bcm.edu hg19 20 37154091 37154091 + Missense_Mutation SNP G G C novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d RALGAPB,NS,carcinoma,0,1 RALGAPB NM_020336 exon12 c.G1832C p.R611P AATTGCGAAGATC . 607.0 105.0 711.0 0.0 . 134 . . Atlas-SNP NCOA3 8202 hgsc.bcm.edu hg19 20 46279951 46279951 + Missense_Mutation SNP G G T rs376291640 alternate_allele TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . NCOA3 NM_181659 exon20 c.G3877T p.D1293Y AGCATGGATGGGC . 133.0 22.0 139.0 0.0 . 156 . . Atlas-SNP ZGPAT 84619 hgsc.bcm.edu hg19 20 62340061 62340061 + Silent SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ZGPAT NM_032527 exon2 c.G129T p.L43L GGACCTGAAGGAG . 59.0 11.0 63.0 0.0 . 57 . . Atlas-SNP KRTAP19-4 337971 hgsc.bcm.edu hg19 21 31869199 31869199 + Missense_Mutation SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . KRTAP19-4 NM_181610 exon1 c.G230T p.R77I AATGATCTTCTTA . 239.0 32.0 250.0 0.0 . 22 . . Atlas-SNP PLA2G3 50487 hgsc.bcm.edu hg19 22 31534717 31534717 + Missense_Mutation SNP G G T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . PLA2G3 NM_015715 exon2 c.C583A p.Q195K TGTACTGCAAGGG . 544.0 95.0 593.0 1.0 . 85 . . Atlas-SNP GRAP2 9402 hgsc.bcm.edu hg19 22 40343142 40343142 + Missense_Mutation SNP C C A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . GRAP2 NM_004810 exon2 c.C32A p.A11D TCACTGCTTCAGG . 263.0 68.0 338.0 0.0 . 29 . . Atlas-SNP TLR8 51311 hgsc.bcm.edu hg19 X 12939183 12939183 + Missense_Mutation SNP T T C novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . TLR8 NM_138636 exon2 c.T2024C p.M675T ATAATATGTTAAA . 134.0 47.0 87.0 0.0 . 134 . . Atlas-SNP SPIN4 139886 hgsc.bcm.edu hg19 X 62570624 62570624 + Silent SNP G G A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . SPIN4 NM_001012968 exon1 c.C75T p.H25H CTTCCTGTGGGTG . 84.0 44.0 89.0 0.0 . 29 . . Atlas-SNP MAGEE2 139599 hgsc.bcm.edu hg19 X 75004287 75004287 + Nonsense_Mutation SNP C C T novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . MAGEE2 NM_138703 exon1 c.G600A p.W200X CAAGTCCCAAATG . 110.0 26.0 69.0 0.0 . 94 . . Atlas-SNP NEFH 4744 hgsc.bcm.edu hg19 22 29885571 29885572 + In_Frame_Ins INS - - CCCCTGAGAAGGCCAAGT novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . NEFH NM_021076 exon4 c.1942_1943insCCCCTGAGAAGGCCAAGT p.S648delinsSPEKAKS . . 170.0 33.0 189.0 0.0 . 178 . . Atlas-INDEL MED12 9968 hgsc.bcm.edu hg19 X 70361159 70361160 + In_Frame_Ins INS - - CCAGCAGCAACA novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . MED12 NM_005120 exon43 c.6347_6348insCCAGCAGCAACA p.H2116delinsHQQQH . . 243.0 94.0 138.0 0.0 . 984 . . Atlas-INDEL TRO 7216 hgsc.bcm.edu hg19 X 54955568 54955598 + Frame_Shift_Del DEL GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG - novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . TRO NM_001039705 exon12 c.2410_2440del p.804_814del . . 133.0 28.0 134.0 0.0 . 246 . . Atlas-Indel,Pindel MYH6 4624 hgsc.bcm.edu hg19 14 23859463 23859463 + Frame_Shift_Del DEL C C - novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . MYH6 NM_002471 exon26 c.3536delA p.D1179fs . . 329.0 21.0 183.0 0.0 . 274 . . Atlas-INDEL CRELD2 79174 hgsc.bcm.edu hg19 22 50315943 50315980 + Frame_Shift_Del DEL CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG - novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . CRELD2 NM_001135101 exon6 c.593_620del p.198_207del . . 74.0 49.0 27.0 0.0 . 57 . . Atlas-INDEL MSL1 339287 hgsc.bcm.edu hg19 17 38289863 38289868 + In_Frame_Del DEL CAGGAA CAGGAA - novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 CAGGAA CAGGAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . MSL1 NM_001012241 exon8 c.843_848del p.281_283del . . 103.0 17.0 125.0 0.0 . 21 . . Atlas-Indel,Pindel RBCK1 10616 hgsc.bcm.edu hg19 20 400070 400071 + Frame_Shift_Ins INS - - C novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . RBCK1 NM_031229 exon5 c.540_541insC p.E180fs . . 156.0 13.0 140.0 0.0 . 38 . . Atlas-INDEL ANO5 203859 hgsc.bcm.edu hg19 11 22297639 22297639 + Splice_Site DEL G G - novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ANO5 NM_001142649 exon21 c.2412-2G>- . . . 286.0 31.0 199.0 0.0 . 162 . . Atlas-Indel,Pindel MYH7 4625 hgsc.bcm.edu hg19 14 23889251 23889251 + Frame_Shift_Del DEL C C - novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . MYH7 NM_000257 exon27 c.3530delA p.D1177fs . . 326.0 34.0 187.0 0.0 . 349 . . Atlas-INDEL RASAL3 64926 hgsc.bcm.edu hg19 19 15563967 15563968 + Frame_Shift_Ins INS - - G novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . RASAL3 NM_022904 exon15 c.2621_2622insC p.Q874fs . . 125.0 10.0 52.0 0.0 . 49 . . Atlas-INDEL LCOR 84458 hgsc.bcm.edu hg19 10 98715171 98715171 + Frame_Shift_Del DEL G G - novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . LCOR NM_001170766 exon8 c.793delT p.W265fs . . 138.0 23.0 157.0 0.0 . 32 . . Atlas-Indel,Pindel TRIM49 57093 hgsc.bcm.edu hg19 11 89537604 89537604 + Frame_Shift_Del DEL C C - novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . TRIM49 NM_020358 exon3 c.35delA p.E12fs . . 392.0 36.0 435.0 0.0 . 45 . . Atlas-INDEL RB1 5925 hgsc.bcm.edu hg19 13 49030478 49030479 + Frame_Shift_Ins INS - - A novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . RB1 NM_000321 exon19 c.1953_1954insA p.Y651fs . . 103.0 19.0 126.0 0.0 . 1068 . . Atlas-Indel,Pindel ANO5 203859 hgsc.bcm.edu hg19 11 22297638 22297659 + Splice_Site DEL TGCATTTACTTCCACTTTTCAG TGCATTTACTTCCACTTTTCAG - novel TCGA-DD-A114-01A-11D-A12Z-10 TCGA-DD-A114-10A-01D-A12Z-10 TGCATTTACTTCCACTTTTCAG TGCATTTACTTCCACTTTTCAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90fc6786-22dd-4122-9622-6cd05c0f9f96 9d9f0180-5872-4882-ab29-986b29f4af7d . ANO5 . . . . . . 236.0 10.0 156.0 0.0 . 162 . . Pindel