Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm AGO4 192670 hgsc.bcm.edu hg19 1 36291032 36291032 + Missense_Mutation SNP A A G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . . NM_017629 exon4 c.A425G p.N142S ACTTGAATGAAGT . 264.0 143.0 123.0 0.0 . . . . Atlas-SNP CELSR2 1952 hgsc.bcm.edu hg19 1 109795619 109795619 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . CELSR2 NM_001408 exon1 c.T2918C p.I973T TGGACATCTTCTC . 95.0 42.0 37.0 0.0 . 228 . . Atlas-SNP ZNF687 57592 hgsc.bcm.edu hg19 1 151260007 151260007 + Silent SNP C C T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ZNF687 NM_020832 exon2 c.C1240T p.L414L GCCATGCTGATGG . 71.0 26.0 19.0 0.0 . 94 . . Atlas-SNP CGN 57530 hgsc.bcm.edu hg19 1 151499552 151499552 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . CGN NM_020770 exon10 c.G1865T p.G622V GTGCTGGAGATAC . 228.0 79.0 83.0 0.0 . 106 . . Atlas-SNP DCST2 127579 hgsc.bcm.edu hg19 1 155003099 155003099 + Silent SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . DCST2 NM_144622 exon6 c.G828T p.R276R ACGCACCCGGTTG . 253.0 94.0 67.0 0.0 . 80 . . Atlas-SNP SMG5 23381 hgsc.bcm.edu hg19 1 156220788 156220788 + Splice_Site SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SMG5 NM_015327 exon22 c.2829-1G>T . AGAGTCCTGGGGA . 58.0 31.0 22.0 0.0 . 98 . . Atlas-SNP FMO1 2326 hgsc.bcm.edu hg19 1 171251160 171251160 + Missense_Mutation SNP C C T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 FMO1,colon,carcinoma,0,2 FMO1 NM_002021 exon7 c.C871T p.R291C CCAGGACGCATCA . 37.0 7.0 39.0 0.0 . 79 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181548355 181548355 + Missense_Mutation SNP A A T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . CACNA1E NM_001205293 exon5 c.A764T p.N255I TGAACAATTCAGG . 545.0 189.0 113.0 0.0 . 778 . . Atlas-SNP PIGR 5284 hgsc.bcm.edu hg19 1 207110487 207110487 + Missense_Mutation SNP A A G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . PIGR NM_002644 exon4 c.T998C p.L333P TCCTGCAGCTGAC . 112.0 30.0 53.0 0.0 . 98 . . Atlas-SNP INTS7 25896 hgsc.bcm.edu hg19 1 212184718 212184718 + Silent SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . INTS7 NM_015434 exon5 c.A555G p.Q185Q CATACCTTGAATC . 559.0 39.0 153.0 0.0 . 68 . . Atlas-SNP RAB3GAP2 25782 hgsc.bcm.edu hg19 1 220356254 220356254 + Missense_Mutation SNP C C G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . RAB3GAP2 NM_012414 exon20 c.G2018C p.R673T TCAAGCCTTAGTA . 373.0 116.0 103.0 0.0 . 120 . . Atlas-SNP OR2L3 391192 hgsc.bcm.edu hg19 1 248224587 248224587 + Missense_Mutation SNP A A G rs61525219 bycluster TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . OR2L3 NM_001004687 exon1 c.A604G p.T202A TTGAGCACCACCA . 564.0 30.0 140.0 0.0 . 97 . . Atlas-SNP ACVR1 90 hgsc.bcm.edu hg19 2 158637001 158637001 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ACVR1 NM_001105 exon4 c.A179G p.N60S CCATCGTTGATGC . 163.0 61.0 43.0 0.0 . 52 . . Atlas-SNP HECW2 57520 hgsc.bcm.edu hg19 2 197084796 197084796 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . HECW2 NM_020760 exon26 c.A4375G p.S1459G AATCACTTAGGTC . 120.0 38.0 56.0 0.0 . 239 . . Atlas-SNP SRGAP3 9901 hgsc.bcm.edu hg19 3 9027370 9027370 + Missense_Mutation SNP C C T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SRGAP3 NM_014850 exon22 c.G3133A p.A1045T GGCGGGCGGACAG . 31.0 16.0 2.0 0.0 . 146 . . Atlas-SNP ZFYVE20 64145 hgsc.bcm.edu hg19 3 15115343 15115343 + Missense_Mutation SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ZFYVE20 NM_022340 exon14 c.G2301T p.E767D CAGATTCTCTGTC . 143.0 56.0 50.0 0.0 . 61 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266100 41266100 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 CTNNB1,gallbladder,other,-1,1 CTNNB1 NM_001098209 exon3 c.T97C p.S33P CTGGACTCTGGAA . 223.0 71.0 91.0 1.0 . 4904 . . Atlas-SNP PBRM1 55193 hgsc.bcm.edu hg19 3 52588770 52588770 + Missense_Mutation SNP C C A rs143564112 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 PBRM1_ENST00000356770,NS,lymphoid_neoplasm,0,1 PBRM1 NM_018313 exon27 c.G4258T p.V1420L CAGGCACACCTGG . 229.0 83.0 69.0 0.0 . 1252 . C|0.999;T|0.001 Atlas-SNP COL6A6 131873 hgsc.bcm.edu hg19 3 130286897 130286897 + Missense_Mutation SNP A A G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . COL6A6 NM_001102608 exon5 c.A1850G p.K617R CTTGCAAAGAGAT . 121.0 45.0 50.0 0.0 . 497 . . Atlas-SNP EIF4G1 1981 hgsc.bcm.edu hg19 3 184049265 184049265 + Silent SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . EIF4G1 NM_001194946 exon31 c.G4287A p.V1429V GAAGGTGGAGTAT . 68.0 28.0 28.0 0.0 . 151 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195511294 195511294 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . MUC4 NM_018406 exon2 c.C7157A p.P2386H GTGACAGGAAGAG . 351.0 17.0 108.0 0.0 . 1505 . . Atlas-SNP ZDHHC19 131540 hgsc.bcm.edu hg19 3 195935366 195935366 + Missense_Mutation SNP C C T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ZDHHC19 NM_001039617 exon4 c.G474A p.M158I AAGCAGCATGAAG . 269.0 91.0 81.0 0.0 . 25 . . Atlas-SNP BDH1 622 hgsc.bcm.edu hg19 3 197238766 197238766 + Missense_Mutation SNP T T G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . BDH1 NM_004051 exon7 c.A1032C p.X344C GACTCTTCAGCGG . 153.0 51.0 60.0 0.0 . 24 . . Atlas-SNP ARAP2 116984 hgsc.bcm.edu hg19 4 36216083 36216083 + Missense_Mutation SNP T T A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ARAP2 NM_015230 exon3 c.A925T p.N309Y CAACATTTCTTCT . 397.0 281.0 120.0 0.0 . 210 . . Atlas-SNP TRAM1L1 133022 hgsc.bcm.edu hg19 4 118006517 118006517 + Silent SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . TRAM1L1 NM_152402 exon1 c.C33T p.P11P AACGGGGGGGTTC . 63.0 45.0 40.0 0.0 . 55 . . Atlas-SNP QRFPR 84109 hgsc.bcm.edu hg19 4 122250816 122250816 + Missense_Mutation SNP C C T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . QRFPR NM_198179 exon6 c.G949A p.V317M TTTGCACGATAGC . 108.0 64.0 63.0 0.0 . 65 . . Atlas-SNP ADAD1 132612 hgsc.bcm.edu hg19 4 123301311 123301311 + Silent SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ADAD1 NM_139243 exon3 c.G87A p.A29A ACCAGCGACAAAG . 130.0 87.0 65.0 0.0 . 94 . . Atlas-SNP SLC9A3 6550 hgsc.bcm.edu hg19 5 474998 474998 + Missense_Mutation SNP A A T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SLC9A3 NM_004174 exon16 c.T2501A p.M834K CGTTACATGTGTG . 68.0 20.0 23.0 0.0 . 89 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13770967 13770967 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . DNAH5 NM_001369 exon56 c.A9496G p.R3166G GGAATCTCTGAAA . 272.0 77.0 66.0 0.0 . 868 . . Atlas-SNP AMACR 23600 hgsc.bcm.edu hg19 5 34005875 34005875 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . AMACR NM_014324 exon2 c.A377G p.Y126C GCCAAATAGTTGA . 61.0 16.0 27.0 0.0 . 38 . . Atlas-SNP ERCC8 1161 hgsc.bcm.edu hg19 5 60217888 60217888 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ERCC8 NM_000082 exon3 c.A268G p.I90V TGCCAATGGAACA . 59.0 24.0 36.0 0.0 . 31 . . Atlas-SNP TNPO1 3842 hgsc.bcm.edu hg19 5 72144245 72144245 + Nonsense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . TNPO1 NM_002270 exon2 c.G49T p.E17X CCTGACGAGCAAG . 99.0 21.0 43.0 0.0 . 90 . . Atlas-SNP ARAP3 64411 hgsc.bcm.edu hg19 5 141033643 141033643 + Silent SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ARAP3 NM_022481 exon33 c.G4509T p.L1503L ACTTCCCAGGCCT . 208.0 86.0 61.0 0.0 . 139 . . Atlas-SNP WWC1 23286 hgsc.bcm.edu hg19 5 167891765 167891765 + Missense_Mutation SNP G G A rs139653620 bycluster TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 WWC1,colon,carcinoma,0,2 WWC1 NM_001161662 exon21 c.G2966A p.R989H CCGAGCGTCTGAT . 194.0 53.0 39.0 0.0 . 98 . G|1.000;A|0.000 Atlas-SNP DOCK2 1794 hgsc.bcm.edu hg19 5 169141427 169141427 + Missense_Mutation SNP A A T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . DOCK2 NM_004946 exon19 c.A1907T p.K636M TAGAAAAGTTGAA . 385.0 103.0 100.0 0.0 . 389 . . Atlas-SNP FLT4 2324 hgsc.bcm.edu hg19 5 180047636 180047636 + Silent SNP G G C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . FLT4 NM_182925 exon16 c.C2379G p.L793L GAGGAGGAGGAGG . 172.0 64.0 47.0 0.0 . 356 . . Atlas-SNP DSP 1832 hgsc.bcm.edu hg19 6 7585392 7585392 + Missense_Mutation SNP A A G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . DSP NM_004415 exon24 c.A7897G p.I2633V ATCTCCATTACAG . 88.0 28.0 34.0 0.0 . 306 . . Atlas-SNP NEU1 4758 hgsc.bcm.edu hg19 6 31830507 31830507 + Missense_Mutation SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . NEU1 NM_000434 exon1 c.G47T p.G16V CGCGGCCCCCAGC . 105.0 32.0 32.0 0.0 . 21 . . Atlas-SNP GPR110 266977 hgsc.bcm.edu hg19 6 46976681 46976681 + Missense_Mutation SNP C C G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . GPR110 NM_153840 exon11 c.G2490C p.Q830H TCTCACCTGGAAT . 171.0 60.0 81.0 0.0 . 102 . . Atlas-SNP C6orf165 154313 hgsc.bcm.edu hg19 6 88128113 88128113 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . C6orf165 NM_001031743 exon7 c.G819T p.E273D ATATGAGGTCTTC . 173.0 71.0 71.0 0.0 . 116 . . Atlas-SNP MYO1G 64005 hgsc.bcm.edu hg19 7 45002481 45002481 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . MYO1G NM_033054 exon22 c.C2914A p.L972M CCTCCAGGGTGCG . 47.0 18.0 8.0 0.0 . 86 . . Atlas-SNP SEMA3E 9723 hgsc.bcm.edu hg19 7 83037733 83037733 + Silent SNP C C T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SEMA3E NM_012431 exon6 c.G621A p.G207G CAGTCGCCCCATG . 214.0 71.0 69.0 0.0 . 125 . . Atlas-SNP STEAP2 261729 hgsc.bcm.edu hg19 7 89854615 89854615 + Silent SNP G G A rs145786195 alternate_allele TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . STEAP2 NM_001244946 exon3 c.G219A p.V73V TCATGTGGTAGAT . 160.0 51.0 93.0 0.0 . 78 . G|1.000;T|0.000 Atlas-SNP HYAL4 23553 hgsc.bcm.edu hg19 7 123517143 123517143 + Silent SNP T T A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . HYAL4 NM_012269 exon5 c.T1380A p.P460P TTCCCCTTCTCCT . 302.0 112.0 106.0 0.0 . 65 . . Atlas-SNP MCPH1 79648 hgsc.bcm.edu hg19 8 6296583 6296583 + Silent SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . MCPH1 NM_001172574 exon6 c.G546A p.E182E ACAAGAGATGAAG . 95.0 29.0 36.0 0.0 . 65 . . Atlas-SNP HGSNAT 138050 hgsc.bcm.edu hg19 8 43033222 43033222 + Missense_Mutation SNP T T A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . HGSNAT NM_152419 exon10 c.T857A p.V286E GGTTTGTATTTAT . 197.0 110.0 114.0 0.0 . 85 . . Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 68939468 68939468 + Silent SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . PREX2 NM_025170 exon5 c.G453T p.L151L CATGCTGCTTGGA . 200.0 45.0 71.0 0.0 . 614 . . Atlas-SNP TRPA1 8989 hgsc.bcm.edu hg19 8 72966074 72966074 + Missense_Mutation SNP G G C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . TRPA1 NM_007332 exon13 c.C1558G p.H520D ACGCATGATGCAA . 151.0 24.0 49.0 0.0 . 256 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77767241 77767241 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 ZFHX4,NS,carcinoma,0,1 ZFHX4 NM_024721 exon10 c.G8084T p.R2695L ACATTCGCTCTCG . 175.0 36.0 36.0 0.0 . 878 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113988234 113988234 + Missense_Mutation SNP C C T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 CSMD3_ENST00000343508,caecum,carcinoma,+1,3 CSMD3 NM_198123 exon7 c.G1174A p.E392K GTTCCTCGGAAAG . 404.0 85.0 101.0 0.0 . 2325 . . Atlas-SNP ZHX1 11244 hgsc.bcm.edu hg19 8 124267557 124267557 + Silent SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ZHX1 NM_007222 exon3 c.A630G p.K210K ATTCTCTTTCTCT . 608.0 126.0 109.0 0.0 . 89 . . Atlas-SNP SLC45A4 57210 hgsc.bcm.edu hg19 8 142231707 142231707 + Silent SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SLC45A4 NM_001080431 exon2 c.C246T p.G82G TGCAACGCCAAAG . 157.0 39.0 27.0 0.0 . 71 . . Atlas-SNP EPPK1 83481 hgsc.bcm.edu hg19 8 144945358 144945358 + Silent SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . EPPK1 NM_031308 exon1 c.C2064A p.V688V GCCAGTGACAGCG . 209.0 40.0 37.0 0.0 . 199 . . Atlas-SNP ARID3C 138715 hgsc.bcm.edu hg19 9 34623647 34623647 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ARID3C NM_001017363 exon4 c.C640A p.Q214K CGGCCTGGAGCTC . 32.0 17.0 19.0 0.0 . 33 . . Atlas-SNP TRPM6 140803 hgsc.bcm.edu hg19 9 77400791 77400791 + Missense_Mutation SNP A A G rs142068228 bycluster TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . TRPM6 NM_017662 exon21 c.T2918C p.M973T CTCACCATTTTTG . 99.0 58.0 48.0 0.0 . 377 . A|1.000;G|0.000 Atlas-SNP SPATA31C1 441452 hgsc.bcm.edu hg19 9 90535228 90535228 + Missense_Mutation SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . . NM_001145124 exon4 c.G406A p.G136S CCGCCAGGTGAGG . 348.0 187.0 123.0 0.0 . . . . Atlas-SNP RAPGEF1 2889 hgsc.bcm.edu hg19 9 134497245 134497245 + Missense_Mutation SNP C C T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . RAPGEF1 NM_198679 exon11 c.G1846A p.G616R CCACCCCACTGAA . 140.0 80.0 58.0 0.0 . 126 . . Atlas-SNP CACNA1B 774 hgsc.bcm.edu hg19 9 140901281 140901281 + Silent SNP C C G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . CACNA1B NM_001243812 exon16 c.C2037G p.V679V CGGCGTCAGCAAA . 210.0 143.0 92.0 0.0 . 266 . . Atlas-SNP VIM 7431 hgsc.bcm.edu hg19 10 17277863 17277863 + Silent SNP A A T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . VIM NM_003380 exon8 c.A1248T p.P416P TCTTCCAAACTTT . 391.0 151.0 114.0 0.0 . 71 . . Atlas-SNP OR13A1 79290 hgsc.bcm.edu hg19 10 45799377 45799377 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . OR13A1 NM_001004297 exon4 c.C494A p.A165D CACACGGCTGTGG . 30.0 18.0 4.0 0.0 . 49 . . Atlas-SNP LRRC18 474354 hgsc.bcm.edu hg19 10 50122143 50122143 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . LRRC18 NM_001006939 exon1 c.A58G p.N20D TGCAATTCCTGGC . 53.0 21.0 37.0 0.0 . 52 . . Atlas-SNP SMC3 9126 hgsc.bcm.edu hg19 10 112343665 112343665 + Missense_Mutation SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SMC3 NM_005445 exon12 c.G1036A p.E346K CTGGCAGAAACAG . 311.0 101.0 89.0 0.0 . 103 . . Atlas-SNP ATRNL1 26033 hgsc.bcm.edu hg19 10 117228753 117228753 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ATRNL1 NM_207303 exon24 c.T3568C p.S1190P AGTTTTTCCTATG . 84.0 39.0 71.0 0.0 . 219 . . Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 135025348 135025348 + Missense_Mutation SNP G G T rs201175312 bycluster;alternate_allele TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . KNDC1 NM_152643 exon23 c.G4222T p.G1408C GAGGACGGCATCT . 36.0 21.0 11.0 0.0 . 155 . G|0.999;A|0.001 Atlas-SNP CDHR5 53841 hgsc.bcm.edu hg19 11 618896 618896 + Missense_Mutation SNP C C T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . CDHR5 NM_021924 exon13 c.G1663A p.V555M TTCCCACACCGGG . 357.0 18.0 87.0 0.0 . 77 . . Atlas-SNP USP47 55031 hgsc.bcm.edu hg19 11 11927068 11927068 + Silent SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . USP47 NM_017944 exon7 c.T738C p.Y246Y ACCTTATGGGTCC . 230.0 89.0 86.0 0.0 . 91 . . Atlas-SNP C11orf84 144097 hgsc.bcm.edu hg19 11 63585307 63585307 + Missense_Mutation SNP G G C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . C11orf84 NM_138471 exon2 c.G158C p.R53T CGCCTAGACCCAG . 87.0 24.0 38.0 0.0 . 33 . . Atlas-SNP MAP4K2 5871 hgsc.bcm.edu hg19 11 64564456 64564456 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . MAP4K2 NM_004579 exon20 c.C1405A p.H469N TTACATGCACCTT . 130.0 57.0 53.0 0.0 . 83 . . Atlas-SNP LTBP3 4054 hgsc.bcm.edu hg19 11 65315205 65315205 + Missense_Mutation SNP C C G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 LTBP3,colon,carcinoma,0,1 LTBP3 NM_001130144 exon13 c.G1934C p.R645P TAGCCGCGGTTGC . 62.0 13.0 8.0 1.0 . 55 . . Atlas-SNP LTBP3 4054 hgsc.bcm.edu hg19 11 65320914 65320914 + Missense_Mutation SNP T T G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . LTBP3 NM_001130144 exon4 c.A952C p.K318Q GACACTTGTGGCA . 160.0 66.0 48.0 0.0 . 55 . . Atlas-SNP TBX10 347853 hgsc.bcm.edu hg19 11 67399113 67399113 + Missense_Mutation SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . TBX10 NM_005995 exon8 c.C1121T p.T374I ACCACAGTGGGGG . 44.0 18.0 12.0 0.0 . 25 . . Atlas-SNP KRTAP5-10 387273 hgsc.bcm.edu hg19 11 71277197 71277197 + Silent SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 KRTAP5-10,NS,carcinoma,0,2 KRTAP5-10 NM_001012710 exon1 c.T564C p.C188C CTGCTGTCAGTCC . 234.0 33.0 76.0 0.0 . 37 . . Atlas-SNP SYTL2 54843 hgsc.bcm.edu hg19 11 85436897 85436897 + Silent SNP A A G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SYTL2 NM_206927 exon1 c.T603C p.N201N TGTCCTATTTTCA . 451.0 158.0 134.0 0.0 . 231 . . Atlas-SNP SESN3 143686 hgsc.bcm.edu hg19 11 94918494 94918494 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SESN3 NM_144665 exon5 c.A688G p.N230D AATTGTTGACTGA . 134.0 47.0 95.0 0.0 . 51 . . Atlas-SNP ERC1 23085 hgsc.bcm.edu hg19 12 1517402 1517402 + Missense_Mutation SNP T T A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ERC1 NM_178040 exon17 c.T3013A p.S1005T AAGCCCTCCCCAG . 63.0 18.0 17.0 0.0 . 95 . . Atlas-SNP C1S 716 hgsc.bcm.edu hg19 12 7177505 7177505 + Silent SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . C1S NM_201442 exon12 c.G1617A p.V539V CCCAGTGAAAATG . 86.0 33.0 35.0 0.0 . 93 . . Atlas-SNP PRB4 5545 hgsc.bcm.edu hg19 12 11461456 11461456 + Missense_Mutation SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . PRB4 NM_002723 exon3 c.G461T p.G154V GGGGGACCTTGGG . 499.0 173.0 144.0 0.0 . 59 . . Atlas-SNP SLC2A13 114134 hgsc.bcm.edu hg19 12 40499574 40499574 + Missense_Mutation SNP G G C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SLC2A13 NM_052885 exon1 c.C37G p.L13V TCCGCAGCGTGTA . 56.0 22.0 9.0 0.0 . 91 . . Atlas-SNP GXYLT1 283464 hgsc.bcm.edu hg19 12 42512967 42512967 + Missense_Mutation SNP A A T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . GXYLT1 NM_173601 exon3 c.T321A p.S107R TTTCAGACTGTAC . 300.0 21.0 80.0 0.0 . 47 . . Atlas-SNP ACVRL1 94 hgsc.bcm.edu hg19 12 52307800 52307800 + Missense_Mutation SNP C C T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ACVRL1 NM_000020 exon5 c.C568T p.L190F TCAGGGCTCCCCT . 172.0 72.0 44.0 0.0 . 60 . . Atlas-SNP KRT75 9119 hgsc.bcm.edu hg19 12 52826871 52826871 + Nonsense_Mutation SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . KRT75 NM_004693 exon2 c.G664T p.E222X CAGCTTCAAGCCT . 192.0 83.0 53.0 0.0 . 75 . . Atlas-SNP PAWR 5074 hgsc.bcm.edu hg19 12 80083895 80083895 + Missense_Mutation SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . PAWR NM_002583 exon2 c.G130T p.G44W TGCCCCCTCCCGG . 22.0 6.0 15.0 0.0 . 14 . . Atlas-SNP GIT2 9815 hgsc.bcm.edu hg19 12 110385195 110385195 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . GIT2 NM_001135214 exon15 c.A1507G p.R503G GACGTCTCTTTAA . 282.0 98.0 88.0 0.0 . 81 . . Atlas-SNP PPP1CC 5501 hgsc.bcm.edu hg19 12 111162541 111162541 + Nonsense_Mutation SNP C C T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . PPP1CC NM_002710 exon4 c.G447A p.W149X AGTTTTCCATAGT . 362.0 40.0 99.0 0.0 . 22 . . Atlas-SNP NOS1 4842 hgsc.bcm.edu hg19 12 117696926 117696926 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . NOS1 NM_000620 exon15 c.A2377G p.M793V CTTCCATGGACAT . 156.0 58.0 43.0 0.0 . 240 . . Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39265478 39265478 + Missense_Mutation SNP G G C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 FREM2,rectum,carcinoma,0,1 FREM2 NM_207361 exon1 c.G3997C p.D1333H GATTTAGATTCAG . 73.0 42.0 64.0 0.0 . 385 . . Atlas-SNP POTEG 404785 hgsc.bcm.edu hg19 14 19553573 19553573 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . POTEG NM_001005356 exon1 c.G157T p.A53S GATTCTGCTATGA . 1087.0 131.0 173.0 0.0 . 118 . . Atlas-SNP TEP1 7011 hgsc.bcm.edu hg19 14 20872028 20872028 + Missense_Mutation SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . TEP1 NM_007110 exon6 c.G1048T p.D350Y TCTTATCTCCCTC . 56.0 26.0 22.0 0.0 . 224 . . Atlas-SNP MYH6 4624 hgsc.bcm.edu hg19 14 23866803 23866803 + Missense_Mutation SNP T T A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . MYH6 NM_002471 exon16 c.A1911T p.K637N GCCTCCTTTGCTT . 89.0 23.0 37.0 0.0 . 274 . . Atlas-SNP MYH7 4625 hgsc.bcm.edu hg19 14 23883217 23883217 + Missense_Mutation SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . MYH7 NM_000257 exon38 c.C5654T p.A1885V CTCACCGCCTCCT . 121.0 51.0 58.0 0.0 . 349 . . Atlas-SNP C14orf39 317761 hgsc.bcm.edu hg19 14 60921835 60921835 + Missense_Mutation SNP C C G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . C14orf39 NM_174978 exon16 c.G1387C p.V463L TTTGAACTTCAGG . 252.0 89.0 104.0 0.0 . 79 . . Atlas-SNP ADCK1 57143 hgsc.bcm.edu hg19 14 78353552 78353552 + Missense_Mutation SNP A A G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ADCK1 NM_020421 exon5 c.A542G p.K181R ACCCAAAGGTGCG . 50.0 22.0 23.0 0.0 . 81 . . Atlas-SNP ACTC1 70 hgsc.bcm.edu hg19 15 35084616 35084616 + Silent SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ACTC1 NM_005159 exon4 c.C609T p.V203V AGTGGTGACAAAG . 164.0 54.0 66.0 0.0 . 75 . . Atlas-SNP BAHD1 22893 hgsc.bcm.edu hg19 15 40757537 40757537 + Missense_Mutation SNP T T A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . BAHD1 NM_014952 exon6 c.T2056A p.L686M GAGCCCTTGCAGA . 182.0 69.0 70.0 0.0 . 68 . . Atlas-SNP LEO1 123169 hgsc.bcm.edu hg19 15 52251010 52251010 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . LEO1 NM_138792 exon6 c.C1174A p.Q392K AATACTGAGGATC . 280.0 101.0 101.0 0.0 . 46 . . Atlas-SNP RFX7 64864 hgsc.bcm.edu hg19 15 56387675 56387675 + Missense_Mutation SNP A A C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . RFX7 NM_022841 exon9 c.T2251G p.S751A ATGATGATGGGGT . 81.0 37.0 57.0 0.0 . 170 . . Atlas-SNP SLX4 84464 hgsc.bcm.edu hg19 16 3651153 3651153 + Silent SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SLX4 NM_032444 exon5 c.G990T p.V330V CTGAGGCACAGAA . 166.0 58.0 58.0 0.0 . 173 . . Atlas-SNP ADAT1 23536 hgsc.bcm.edu hg19 16 75637056 75637056 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ADAT1 NM_012091 exon10 c.A1303G p.K435E CCACTTTGCTGAT . 90.0 49.0 55.0 0.0 . 45 . . Atlas-SNP ALOX15B 247 hgsc.bcm.edu hg19 17 7951723 7951723 + Missense_Mutation SNP C C T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ALOX15B NM_001141 exon14 c.C1871T p.P624L CCTATCCGGATGA . 35.0 20.0 19.0 0.0 . 66 . . Atlas-SNP TVP23C 201158 hgsc.bcm.edu hg19 17 15406424 15406424 + Missense_Mutation SNP C C A rs17850827 TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . . NM_145301 exon6 c.G585T p.R195S AAACTTCCTCGAG . 64.0 41.0 29.0 0.0 . . . C|1.000;|0.000 Atlas-SNP FOXN1 8456 hgsc.bcm.edu hg19 17 26851109 26851109 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . FOXN1 NM_003593 exon1 c.G122T p.S41I CACAGAGTGTAAG . 78.0 34.0 37.0 0.0 . 51 . . Atlas-SNP MRPL10 124995 hgsc.bcm.edu hg19 17 45906024 45906024 + Missense_Mutation SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . MRPL10 NM_148887 exon3 c.C95T p.T32I TGGAGGGTAGGCA . 39.0 16.0 15.0 0.0 . 24 . . Atlas-SNP SPHK1 8877 hgsc.bcm.edu hg19 17 74383503 74383503 + Missense_Mutation SNP C C G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SPHK1 NM_182965 exon6 c.C1249G p.P417A TTGGAGCCCAAGG . 187.0 56.0 51.0 0.0 . 24 . . Atlas-SNP USP36 57602 hgsc.bcm.edu hg19 17 76802273 76802273 + Silent SNP G G A rs372776119 TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . USP36 NM_025090 exon15 c.C2181T p.P727P AACGACGGGGTGA . 141.0 69.0 34.0 0.0 . 243 . . Atlas-SNP EPB41L3 23136 hgsc.bcm.edu hg19 18 5433469 5433469 + Missense_Mutation SNP T T A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . EPB41L3 NM_012307 exon8 c.A911T p.K304M CATACCTTAGCAT . 85.0 27.0 42.0 0.0 . 222 . . Atlas-SNP ANKRD12 23253 hgsc.bcm.edu hg19 18 9256402 9256402 + Missense_Mutation SNP A A T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ANKRD12 NM_015208 exon9 c.A3137T p.K1046I AACTAAAATCTGA . 239.0 64.0 122.0 0.0 . 167 . . Atlas-SNP NPC1 4864 hgsc.bcm.edu hg19 18 21125036 21125036 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . NPC1 NM_000271 exon12 c.A1835G p.E612G TTTAGTTCATCTT . 334.0 115.0 89.0 0.0 . 114 . . Atlas-SNP SYT4 6860 hgsc.bcm.edu hg19 18 40850324 40850324 + Silent SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SYT4 NM_020783 exon4 c.C1260T p.H420H GAGCACGTGCCAC . 172.0 10.0 79.0 0.0 . 162 . . Atlas-SNP CDH7 1005 hgsc.bcm.edu hg19 18 63430104 63430104 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . CDH7 NM_004361 exon2 c.G26T p.C9F AGTTCTGCCATTT . 94.0 31.0 54.0 0.0 . 362 . . Atlas-SNP FZR1 51343 hgsc.bcm.edu hg19 19 3527733 3527733 + Missense_Mutation SNP T T G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . FZR1 NM_001136198 exon6 c.T575G p.L192R TCAATCTGGTGGA . 160.0 47.0 50.0 0.0 . 42 . . Atlas-SNP C19orf10 56005 hgsc.bcm.edu hg19 19 4658077 4658077 + Silent SNP T T A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . C19orf10 NM_019107 exon6 c.A462T p.A154A TTTGAATGCCCCG . 38.0 11.0 23.0 0.0 . 9 . . Atlas-SNP ZNF414 84330 hgsc.bcm.edu hg19 19 8576572 8576572 + Missense_Mutation SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ZNF414 NM_032370 exon5 c.G803T p.R268L CGCAGGCGCGGGG . 34.0 19.0 11.0 0.0 . 25 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9002558 9002558 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . MUC16 NM_024690 exon51 c.C40258A p.H13420N TGCCGTGGGTCAG . 363.0 117.0 99.0 0.0 . 4315 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9087113 9087113 + Missense_Mutation SNP T T C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . MUC16 NM_024690 exon1 c.A4702G p.T1568A ACTGTGTCACGTG . 406.0 153.0 139.0 0.0 . 4315 . . Atlas-SNP ZNF676 163223 hgsc.bcm.edu hg19 19 22363952 22363952 + Missense_Mutation SNP A A T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ZNF676 NM_001001411 exon3 c.T567A p.S189R ATGAATACTCTTA . 98.0 31.0 60.0 0.0 . 146 . . Atlas-SNP ZNF676 163223 hgsc.bcm.edu hg19 19 22363953 22363953 + Missense_Mutation SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ZNF676 NM_001001411 exon3 c.G566T p.S189I TGAATACTCTTAT . 100.0 27.0 60.0 0.0 . 146 . . Atlas-SNP FCGBP 8857 hgsc.bcm.edu hg19 19 40424311 40424311 + Missense_Mutation SNP G G C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . FCGBP NM_003890 exon4 c.C1892G p.P631R GCGTCAGGAGCCA . 104.0 40.0 44.0 0.0 . 416 . . Atlas-SNP PHLDB3 653583 hgsc.bcm.edu hg19 19 43983597 43983597 + Missense_Mutation SNP C C A rs200179651 bycluster;alternate_allele TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . PHLDB3 NM_198850 exon14 c.G1634T p.R545L TTGATGCGGCCGC . 165.0 63.0 39.0 0.0 . 30 . . Atlas-SNP LILRB1 10859 hgsc.bcm.edu hg19 19 55148212 55148212 + Silent SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . LILRB1 NM_001081637 exon15 c.G1842A p.V614V GGATGTGACCTAC . 385.0 105.0 119.0 0.0 . 140 . . Atlas-SNP ZNF606 80095 hgsc.bcm.edu hg19 19 58489830 58489830 + Missense_Mutation SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ZNF606 NM_025027 exon7 c.C2218T p.H740Y CACAATGATTACA . 269.0 11.0 100.0 0.0 . 155 . . Atlas-SNP SMOX 54498 hgsc.bcm.edu hg19 20 4163387 4163387 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SMOX NM_175839 exon5 c.G1261T p.G421C CGCTACGGCCATG . 165.0 67.0 62.0 0.0 . 119 . . Atlas-SNP ZFP64 55734 hgsc.bcm.edu hg19 20 50769740 50769740 + Missense_Mutation SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ZFP64 NM_018197 exon6 c.C991T p.R331W GCTTCCGGAGGGT . 244.0 101.0 78.0 0.0 . 240 . . Atlas-SNP KRTAP13-2 337959 hgsc.bcm.edu hg19 21 31744410 31744410 + Missense_Mutation SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . KRTAP13-2 NM_181621 exon1 c.G122T p.C41F GGAGAGCAGAGGT . 225.0 76.0 79.0 0.0 . 29 . . Atlas-SNP RRP1B 23076 hgsc.bcm.edu hg19 21 45094517 45094517 + Missense_Mutation SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . RRP1B NM_015056 exon5 c.C358A p.L120M CTTTAGCTGATTC . 175.0 56.0 60.0 0.0 . 51 . . Atlas-SNP HIRA 7290 hgsc.bcm.edu hg19 22 19376069 19376069 + Silent SNP A A G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . HIRA NM_003325 exon10 c.T945C p.C315C TTTCAGACATGTG . 100.0 41.0 41.0 0.0 . 100 . . Atlas-SNP HMGXB4 10042 hgsc.bcm.edu hg19 22 35661228 35661228 + Missense_Mutation SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . HMGXB4 NM_001003681 exon5 c.G847A p.D283N AACCTTGATCTTT . 228.0 72.0 72.0 0.0 . 52 . . Atlas-SNP SHROOM2 357 hgsc.bcm.edu hg19 X 9863964 9863964 + Missense_Mutation SNP G G T novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SHROOM2 NM_001649 exon4 c.G2016T p.Q672H CACCCAGGAAGGA . 33.0 22.0 9.0 0.0 . 139 . . Atlas-SNP TGIF2LX 90316 hgsc.bcm.edu hg19 X 89177754 89177754 + Missense_Mutation SNP G G A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . TGIF2LX NM_138960 exon2 c.G670A p.A224T GATGCAGCAGTAC . 275.0 216.0 78.0 0.0 . 84 . . Atlas-SNP PLP1 5354 hgsc.bcm.edu hg19 X 103041518 103041518 + Missense_Mutation SNP A A G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . PLP1 NM_001128834 exon4 c.A316G p.T106A TACAAGACCACCA . 169.0 131.0 86.0 0.0 . 37 . . Atlas-SNP RBMXL3 139804 hgsc.bcm.edu hg19 X 114424168 114424168 + Missense_Mutation SNP C C A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . RBMXL3 NM_001145346 exon1 c.C164A p.T55N TCGTCACCTTCGA . 62.0 55.0 27.0 0.0 . 83 . . Atlas-SNP NUMA1 4926 hgsc.bcm.edu hg19 11 71726211 71726220 + Frame_Shift_Del DEL CCTGATGGGC CCTGATGGGC - novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 CCTGATGGGC CCTGATGGGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . NUMA1 NM_006185 exon15 c.2330_2339del p.777_780del . . 67.0 10.0 23.0 0.0 . 142 . . Atlas-INDEL ANAPC1 64682 hgsc.bcm.edu hg19 2 112537964 112537965 + Splice_Site INS - - A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ANAPC1 NM_022662 exon45 c.5203-2->T . . . 801.0 144.0 151.0 0.0 . 116 . . Atlas-INDEL CCNB1IP1 57820 hgsc.bcm.edu hg19 14 20779825 20779826 + Frame_Shift_Ins INS - - A novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . CCNB1IP1 NM_021178 exon7 c.718_719insT p.A240fs . . 291.0 83.0 90.0 0.0 . 29 . . Atlas-Indel,Pindel SCTR 6344 hgsc.bcm.edu hg19 2 120197740 120197741 + Frame_Shift_Ins INS - - G novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . SCTR NM_002980 exon13 c.1276_1277insC p.S426fs . . 131.0 10.0 42.0 0.0 . 45 . . Atlas-INDEL BIN1 274 hgsc.bcm.edu hg19 2 127821169 127821169 + Frame_Shift_Del DEL T T - novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . BIN1 NM_139343 exon9 c.753delC p.N251fs . . 150.0 52.0 54.0 0.0 . 85 . . Atlas-Indel,Pindel ZNF676 163223 hgsc.bcm.edu hg19 19 22363957 22363958 + Frame_Shift_Del DEL TA TA - novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 TA TA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ZNF676 NM_001001411 exon3 c.562_563del p.188_188del . . 110.0 30.0 60.0 0.0 . 146 . . Atlas-INDEL FOXP4 116113 hgsc.bcm.edu hg19 6 41533560 41533561 + Frame_Shift_Ins INS - - C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . FOXP4 NM_001012427 exon2 c.62_63insC p.G21fs . . 179.0 12.0 46.0 0.0 . 83 . . Atlas-INDEL MUC16 94025 hgsc.bcm.edu hg19 19 8961997 8961998 + Frame_Shift_Ins INS - - A rs369723028 TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . MUC16 NM_024690 exon83 c.43380_43381insT p.L14460fs . . 112.0 10.0 37.0 0.0 . 4315 . . Atlas-INDEL RETNLB 84666 hgsc.bcm.edu hg19 3 108474715 108474716 + Frame_Shift_Ins INS - - C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . RETNLB NM_032579 exon3 c.246_247insG p.C82fs . . 375.0 30.0 57.0 0.0 . 38 . . Atlas-INDEL MAP2K4 6416 hgsc.bcm.edu hg19 17 12016635 12016636 + Frame_Shift_Del DEL TA TA - novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 TA TA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 MAP2K4,NS,carcinoma,0,1 MAP2K4 NM_003010 exon7 c.770_771del p.257_257del . . 71.0 37.0 50.0 0.0 . 176 . . Atlas-Indel,Pindel HS1BP3 64342 hgsc.bcm.edu hg19 2 20818851 20818852 + Frame_Shift_Ins INS - - C novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . HS1BP3 NM_022460 exon7 c.1075_1076insG p.Q359fs . . 137.0 10.0 35.0 0.0 . 33 . . Atlas-INDEL ZNF790 388536 hgsc.bcm.edu hg19 19 37309866 37309869 + Frame_Shift_Del DEL AAGA AAGA - novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 AAGA AAGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . ZNF790 NM_206894 exon5 c.1378_1381del p.460_461del . . 174.0 51.0 68.0 0.0 . 89 . . Atlas-Indel,Pindel CCDC144B 284047 hgsc.bcm.edu hg19 17 18498497 18498498 + RNA INS - - AA rs59933375 bycluster;alternate_allele TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . CCDC144B . . . . . . 10.0 10.0 0.0 0.0 . 106 . . Pindel NCAM1 4684 hgsc.bcm.edu hg19 11 112832332 112832363 + Frame_Shift_Del DEL CATCCCTCCCAGCCAGCAGATTACAATGCTGC CATCCCTCCCAGCCAGCAGATTACAATGCTGC - novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 CATCCCTCCCAGCCAGCAGATTACAATGCTGC CATCCCTCCCAGCCAGCAGATTACAATGCTGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . NCAM1 NM_001242607 wholegene . . . . 37.0 37.0 0.0 0.0 . 372 . . Pindel NCAM1 4684 hgsc.bcm.edu hg19 11 112832332 112832376 + Frame_Shift_Del DEL CATCCCTCCCAGCCAGCAGATTACAATGCTGCCAAACTAAGGATT CATCCCTCCCAGCCAGCAGATTACAATGCTGCCAAACTAAGGATT - novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 CATCCCTCCCAGCCAGCAGATTACAATGCTGCCAAACTAAGGATT CATCCCTCCCAGCCAGCAGATTACAATGCTGCCAAACTAAGGATT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . NCAM1 NM_001242607 wholegene . . . . 11.0 11.0 0.0 0.0 . 372 . . Pindel CDC27 996 hgsc.bcm.edu hg19 17 45234594 45234729 + Frame_Shift_Del DEL CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT - novel TCGA-DD-A116-01A-11D-A12Z-10 TCGA-DD-A116-10A-01D-A12Z-10 CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62bed857-df38-4647-9db4-b95bca893cfb 3e8275bd-f6e8-43cc-956f-83a6c36c0b09 . CDC27 NM_001114091 exon6 c.601_631del p.201_211del . . 19.0 19.0 0.0 0.0 . 337 . . Pindel