Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm AJAP1 55966 hgsc.bcm.edu hg19 1 4772503 4772503 + Silent SNP C C G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . AJAP1 NM_018836 exon2 c.C573G p.A191A GGAGGCCCTGGAG . 29.0 11.0 10.0 0.0 . 68 . . Atlas-SNP MTOR 2475 hgsc.bcm.edu hg19 1 11169374 11169374 + Missense_Mutation SNP T T A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . MTOR NM_004958 exon56 c.A7501T p.I2501F TGTTAATAATCTG . 119.0 9.0 92.0 0.0 . 327 . . Atlas-SNP HNRNPCL1 343069 hgsc.bcm.edu hg19 1 12907351 12907351 + Silent SNP A A G rs2359485 bycluster TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . HNRNPCL1 NM_001013631 exon2 c.T792C p.D264D CTGGTCATCCCCC . 192.0 29.0 103.0 0.0 . 68 . A|0.500;G|0.500 Atlas-SNP COL16A1 1307 hgsc.bcm.edu hg19 1 32151735 32151735 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . COL16A1 NM_001856 exon28 c.G1841A p.G614E GGTGGCCCCTGCA . 126.0 70.0 85.0 0.0 . 137 . . Atlas-SNP ZMYM4 9202 hgsc.bcm.edu hg19 1 35852772 35852772 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ZMYM4 NM_005095 exon12 c.C2005T p.L669F CAGCGTCTCGCTG . 87.0 8.0 68.0 0.0 . 143 . . Atlas-SNP COL8A2 1296 hgsc.bcm.edu hg19 1 36565805 36565805 + Silent SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . COL8A2 NM_005202 exon1 c.G39A p.L13L TAGCAGCAGCAGC . 25.0 14.0 9.0 0.0 . 41 . . Atlas-SNP INSL5 10022 hgsc.bcm.edu hg19 1 67266850 67266850 + Nonsense_Mutation SNP C C A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . INSL5 NM_005478 exon1 c.G55T p.E19X GCACTTCTGAGAT . 58.0 25.0 64.0 0.0 . 26 . . Atlas-SNP ANKRD13C 81573 hgsc.bcm.edu hg19 1 70740488 70740488 + Missense_Mutation SNP C C G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ANKRD13C NM_030816 exon11 c.G1309C p.G437R CTCTACCCAGATG . 141.0 26.0 79.0 0.0 . 36 . . Atlas-SNP UBE2Q1 55585 hgsc.bcm.edu hg19 1 154527970 154527970 + Missense_Mutation SNP A A C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . UBE2Q1 NM_017582 exon3 c.T471G p.C157W GAGTTTACACAGG . 126.0 50.0 66.0 0.0 . 35 . . Atlas-SNP PBX1 5087 hgsc.bcm.edu hg19 1 164781342 164781342 + Missense_Mutation SNP C C A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PBX1 NM_001204963 exon6 c.C953A p.A318D TGTCAGCCCATGG . 180.0 26.0 87.0 0.0 . 60 . . Atlas-SNP TDRD5 163589 hgsc.bcm.edu hg19 1 179631316 179631316 + Silent SNP T T A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . TDRD5 NM_001199085 exon15 c.T2400A p.P800P GTTACCTCTACAG . 76.0 43.0 36.0 0.0 . 149 . . Atlas-SNP COLGALT2 23127 hgsc.bcm.edu hg19 1 183944304 183944304 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 GLT25D2,caecum,carcinoma,0,1 . NM_015101 exon3 c.G419A p.R140Q GCAAACCGGGAGG . 60.0 12.0 23.0 0.0 . . . . Atlas-SNP CR1 1378 hgsc.bcm.edu hg19 1 207789962 207789962 + Missense_Mutation SNP A A T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . CR1 NM_000651 exon41 c.A6704T p.H2235L GGAGACACACAGG . 173.0 42.0 111.0 0.0 . 354 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228511096 228511096 + Silent SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . OBSCN NM_001271223 exon67 c.C18312T p.C6104C TGACTGCGTGGTG . 141.0 27.0 54.0 0.0 . 2142 . . Atlas-SNP KIF26B 55083 hgsc.bcm.edu hg19 1 245862258 245862258 + Missense_Mutation SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . KIF26B NM_018012 exon14 c.G6097A p.A2033T GTCCGCGCGAAGT . 97.0 72.0 46.0 0.0 . 343 . . Atlas-SNP OR2L8 391190 hgsc.bcm.edu hg19 1 248112614 248112614 + Nonsense_Mutation SNP C C A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 OR2L8,NS,carcinoma,0,1 OR2L8 NM_001001963 exon1 c.C455A p.S152X TAGGCTCGATCAA . 529.0 117.0 156.0 0.0 . 92 . . Atlas-SNP OR2T33 391195 hgsc.bcm.edu hg19 1 248436686 248436686 + Missense_Mutation SNP A A G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . OR2T33 NM_001004695 exon1 c.T431C p.M144T CACGACATGGTCA . 650.0 177.0 175.0 0.0 . 133 . . Atlas-SNP GRHL1 29841 hgsc.bcm.edu hg19 2 10132262 10132262 + Silent SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . GRHL1 NM_198182 exon11 c.G1449A p.Q483Q CTTGCAGCGGGGC . 162.0 65.0 66.0 0.0 . 95 . . Atlas-SNP NLRC4 58484 hgsc.bcm.edu hg19 2 32466120 32466120 + Missense_Mutation SNP C C G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . NLRC4 NM_001199138 exon5 c.G2332C p.E778Q CATCTTCTTCATT . 130.0 14.0 54.0 0.0 . 165 . . Atlas-SNP GLI2 2736 hgsc.bcm.edu hg19 2 121726310 121726310 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . GLI2 NM_005270 exon5 c.C664T p.R222W AGCCCGCGGGTGA . 102.0 11.0 30.0 0.0 . 187 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141264466 141264466 + Missense_Mutation SNP T T G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . LRP1B NM_018557 exon53 c.A8420C p.E2807A GCATTTTCATCAC . 185.0 79.0 99.0 0.0 . 1315 . . Atlas-SNP NEB 4703 hgsc.bcm.edu hg19 2 152552146 152552146 + Silent SNP G G C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . NEB NM_004543 exon18 c.C1620G p.P540P ATCAGGGGGGATA . 167.0 16.0 111.0 0.0 . 1697 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179588199 179588199 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . TTN NM_001267550 exon74 c.G21628A p.V7210M AAACCACACAGGT . 118.0 38.0 93.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179638382 179638382 + Missense_Mutation SNP C C A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . TTN NM_001267550 exon32 c.G7401T p.K2467N TGACACCTTACAT . 263.0 15.0 126.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179659228 179659228 + Silent SNP G G C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . TTN NM_001267550 exon8 c.C1296G p.A432A ATCAACGGCAGCA . 100.0 38.0 71.0 0.0 . 18412 . . Atlas-SNP TOP2B 7155 hgsc.bcm.edu hg19 3 25665077 25665077 + Missense_Mutation SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 TOP2B,caecum,carcinoma,0,1 TOP2B NM_001068 exon21 c.C2641T p.P881S AGTTGGGTAGTTT . 277.0 65.0 135.0 0.0 . 98 . . Atlas-SNP OXSM 54995 hgsc.bcm.edu hg19 3 25835782 25835782 + Missense_Mutation SNP G G T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . OXSM NM_017897 exon3 c.G1177T p.V393F GGGGCAGTCGAGG . 122.0 18.0 89.0 0.0 . 54 . . Atlas-SNP PRSS50 29122 hgsc.bcm.edu hg19 3 46755769 46755769 + Silent SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PRSS50 NM_013270 exon4 c.C693T p.D231D CACATAGTCCGTG . 86.0 61.0 50.0 0.0 . 35 . . Atlas-SNP KLHL18 23276 hgsc.bcm.edu hg19 3 47371491 47371491 + Missense_Mutation SNP T T C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . KLHL18 NM_025010 exon4 c.T452C p.M151T CAATGATGTGTGC . 123.0 19.0 49.0 0.0 . 46 . . Atlas-SNP MST1R 4486 hgsc.bcm.edu hg19 3 49936589 49936589 + Silent SNP T T C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . MST1R NM_001244937 exon2 c.A1338G p.V446V GACCTGTACTGGT . 109.0 12.0 63.0 0.0 . 205 . . Atlas-SNP ATXN7 6314 hgsc.bcm.edu hg19 3 63975996 63975996 + Missense_Mutation SNP G G T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ATXN7 NM_000333 exon10 c.G1506T p.E502D AGAAGAGTCTGTT . 110.0 19.0 57.0 0.0 . 126 . . Atlas-SNP PRICKLE2 166336 hgsc.bcm.edu hg19 3 64084858 64084858 + Silent SNP G G T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 PRICKLE2,NS,carcinoma,0,1 PRICKLE2 NM_198859 exon8 c.C2404A p.R802R CGTATCGCAGGCG . 119.0 19.0 80.0 0.0 . 88 . . Atlas-SNP GSK3B 2932 hgsc.bcm.edu hg19 3 119635000 119635000 + Nonsense_Mutation SNP G G A rs201787969 TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 GSK3B_ENST00000316626,NS,carcinoma,0,2 GSK3B NM_002093 exon5 c.C499T p.R167X AACTTCGGAACAG . 77.0 8.0 47.0 0.0 . 119 . . Atlas-SNP DNAJB8 165721 hgsc.bcm.edu hg19 3 128181899 128181899 + Silent SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . DNAJB8 NM_153330 exon3 c.C190T p.L64L CATACAGGGAGCG . 120.0 14.0 56.0 0.0 . 34 . . Atlas-SNP PLXND1 23129 hgsc.bcm.edu hg19 3 129303388 129303388 + Silent SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PLXND1 NM_015103 exon6 c.C1869T p.I623I GCCCGAGATCTGC . 92.0 41.0 35.0 0.0 . 149 . . Atlas-SNP SLCO2A1 6578 hgsc.bcm.edu hg19 3 133673915 133673915 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . SLCO2A1 NM_005630 exon4 c.G520A p.V174M CAACCACCATCAG . 131.0 56.0 59.0 0.0 . 72 . . Atlas-SNP PHC3 80012 hgsc.bcm.edu hg19 3 169846627 169846627 + Missense_Mutation SNP G G C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PHC3 NM_024947 exon8 c.C1633G p.Q545E GGCCCTGGGACAG . 86.0 31.0 64.0 0.0 . 113 . . Atlas-SNP CC2D2A 57545 hgsc.bcm.edu hg19 4 15601277 15601277 + Missense_Mutation SNP A A G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . CC2D2A NM_001080522 exon37 c.A4622G p.D1541G GAGAAGATGTAGA . 273.0 20.0 109.0 0.0 . 158 . . Atlas-SNP PPARGC1A 10891 hgsc.bcm.edu hg19 4 23815325 23815325 + Missense_Mutation SNP C C A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PPARGC1A NM_013261 exon8 c.G1781T p.R594I GAGGATCTACTGC . 52.0 9.0 52.0 0.0 . 129 . . Atlas-SNP BEND4 389206 hgsc.bcm.edu hg19 4 42145706 42145706 + Missense_Mutation SNP G G T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . BEND4 NM_001159547 exon3 c.C793A p.P265T GGTTTGGAGTTGG . 158.0 11.0 78.0 0.0 . 67 . . Atlas-SNP HERC3 8916 hgsc.bcm.edu hg19 4 89591339 89591339 + Missense_Mutation SNP A A T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . HERC3 NM_014606 exon16 c.A1847T p.E616V TTCCTGAGATTTC . 89.0 31.0 82.0 0.0 . 82 . . Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126369855 126369855 + Missense_Mutation SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . FAT4 NM_024582 exon9 c.G7684A p.A2562T AATAAGGCCGATT . 25.0 12.0 42.0 0.0 . 1752 . . Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126371628 126371628 + Missense_Mutation SNP G G C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . FAT4 NM_024582 exon9 c.G9457C p.D3153H GCTCTTGATTATG . 67.0 11.0 75.0 0.0 . 1752 . . Atlas-SNP MAP9 79884 hgsc.bcm.edu hg19 4 156289738 156289738 + Missense_Mutation SNP C C A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . MAP9 NM_001039580 exon5 c.G708T p.E236D GCTAACCTCAGGA . 88.0 29.0 110.0 0.0 . 79 . . Atlas-SNP CBR4 84869 hgsc.bcm.edu hg19 4 169923357 169923357 + Splice_Site SNP C C G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . CBR4 NM_032783 exon5 c.401-1G>C . TGCTTCCTAGGAC . 49.0 24.0 31.0 0.0 . 15 . . Atlas-SNP EMB 133418 hgsc.bcm.edu hg19 5 49724007 49724007 + Missense_Mutation SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . EMB NM_198449 exon2 c.C167T p.S56F TCCAAGGAAAAGT . 78.0 16.0 55.0 0.0 . 42 . . Atlas-SNP MOCS2 4338 hgsc.bcm.edu hg19 5 52405551 52405551 + Silent SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . MOCS2 NM_176806 exon1 c.G9A p.P3P GCACAGCGGCACC . 49.0 19.0 31.0 0.0 . 28 . . Atlas-SNP ANKRD32 84250 hgsc.bcm.edu hg19 5 94025298 94025298 + Missense_Mutation SNP G G T rs367590507 alternate_allele TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ANKRD32 NM_032290 exon18 c.G2406T p.K802N TCACAAGACTAAT . 82.0 25.0 66.0 0.0 . 117 . . Atlas-SNP GRAMD3 65983 hgsc.bcm.edu hg19 5 125759319 125759319 + Missense_Mutation SNP T T C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . GRAMD3 NM_001146321 exon1 c.T2C p.M1T GCAAGATGTGGAA . 114.0 63.0 56.0 0.0 . 30 . . Atlas-SNP DDX46 9879 hgsc.bcm.edu hg19 5 134143603 134143603 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . DDX46 NM_014829 exon16 c.C2120T p.A707V ACAGAGCAGGGCG . 90.0 24.0 77.0 0.0 . 77 . . Atlas-SNP ARSI 340075 hgsc.bcm.edu hg19 5 149677216 149677216 + Nonsense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ARSI NM_001012301 exon2 c.G1271A p.W424X AGCTTCCACTCAC . 66.0 24.0 35.0 0.0 . 65 . . Atlas-SNP HDGFL1 154150 hgsc.bcm.edu hg19 6 22570186 22570186 + Missense_Mutation SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . HDGFL1 NM_138574 exon1 c.G382A p.E128K GGCGACGAATTGG . 94.0 38.0 28.0 0.0 . 33 . . Atlas-SNP HIST1H2BD 3017 hgsc.bcm.edu hg19 6 26158595 26158595 + Silent SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . HIST1H2BD NM_021063 exon1 c.C198T p.F66F TTCCTTCGTCAAC . 202.0 26.0 106.0 0.0 . 45 . . Atlas-SNP GABBR1 2550 hgsc.bcm.edu hg19 6 29574930 29574930 + Missense_Mutation SNP C C A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . GABBR1 NM_001470 exon17 c.G2058T p.W686C GACCCACCAAATC . 183.0 18.0 65.0 0.0 . 95 . . Atlas-SNP MUC21 394263 hgsc.bcm.edu hg19 6 30954774 30954774 + Missense_Mutation SNP G G C rs41288649 bycluster TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . MUC21 NM_001010909 exon2 c.G822C p.E274D CTCTGAGTCCAGC . 234.0 25.0 72.0 0.0 . 98 . G|0.500;C|0.500 Atlas-SNP HSPA1L 3305 hgsc.bcm.edu hg19 6 31778842 31778842 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . HSPA1L NM_005527 exon2 c.G908A p.R303Q TCAAATCGAGCTC . 113.0 60.0 58.0 0.0 . 185 . . Atlas-SNP HLA-DPB1 3115 hgsc.bcm.edu hg19 6 33053656 33053656 + Missense_Mutation SNP G G T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . HLA-DPB1 NM_002121 exon4 c.G747T p.R249S CAGGAGGAGCAAG . 116.0 8.0 51.0 0.0 . 28 . . Atlas-SNP PPIL1 51645 hgsc.bcm.edu hg19 6 36823793 36823793 + Silent SNP T T C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PPIL1 NM_016059 exon4 c.A297G p.A99A GGCCATTGCGAGA . 63.0 35.0 28.0 0.0 . 6 . . Atlas-SNP MOCS1 4337 hgsc.bcm.edu hg19 6 39895091 39895091 + Missense_Mutation SNP A A G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . MOCS1 NM_005943 exon1 c.T227C p.L76P TCTGTGAGGGAGA . 101.0 17.0 33.0 0.0 . 87 . . Atlas-SNP MAP3K5 4217 hgsc.bcm.edu hg19 6 136913604 136913604 + Silent SNP A A G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . MAP3K5 NM_005923 exon22 c.T3027C p.D1009D CTTGACATCTCTT . 99.0 16.0 66.0 0.0 . 136 . . Atlas-SNP HGC6.3 0 hgsc.bcm.edu hg19 6 168376895 168376895 + Silent SNP G G A rs372347044 TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . . NM_001129895 exon1 c.C438T p.C146C GAGAAGGCAGTGG . 210.0 20.0 93.0 0.0 . . . . Atlas-SNP AQP1 358 hgsc.bcm.edu hg19 7 30951862 30951862 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . AQP1 NM_198098 exon1 c.C338T p.S113L TCCTCTCAGGCAT . 82.0 10.0 15.0 0.0 . 38 . . Atlas-SNP NPSR1 387129 hgsc.bcm.edu hg19 7 34698055 34698055 + Missense_Mutation SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 NPSR1_ENST00000359791,colon,carcinoma,0,3 NPSR1 NM_207172 exon1 c.G31A p.D11N AGCTTCGATTCCA . 106.0 38.0 60.0 0.0 . 134 . . Atlas-SNP AEBP1 165 hgsc.bcm.edu hg19 7 44149823 44149823 + Missense_Mutation SNP C C A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . AEBP1 NM_001129 exon11 c.C1278A p.D426E TGAGGACGACTAC . 138.0 14.0 57.0 0.0 . 102 . . Atlas-SNP BAZ1B 9031 hgsc.bcm.edu hg19 7 72903721 72903721 + Missense_Mutation SNP T T C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . BAZ1B NM_032408 exon6 c.A694G p.I232V TGATGATCTAGGT . 229.0 120.0 92.0 0.0 . 147 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82583266 82583266 + Silent SNP A A G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PCLO NM_014510 exon5 c.T7003C p.L2335L CGGATAAGCTACT . 360.0 82.0 120.0 0.0 . 1506 . . Atlas-SNP RINT1 60561 hgsc.bcm.edu hg19 7 105195558 105195558 + Nonsense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . RINT1 NM_021930 exon11 c.C1555T p.R519X AGGATACGATTAA . 123.0 8.0 68.0 0.0 . 65 . . Atlas-SNP SPAM1 6677 hgsc.bcm.edu hg19 7 123594436 123594436 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . SPAM1 NM_153189 exon3 c.C812T p.P271L AGTCTCCTGTAGC . 107.0 12.0 71.0 0.0 . 195 . . Atlas-SNP SLC13A4 26266 hgsc.bcm.edu hg19 7 135390908 135390908 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . SLC13A4 NM_012450 exon4 c.G506A p.G169D GAGTTGCCCGCCA . 108.0 13.0 41.0 0.0 . 56 . . Atlas-SNP OR9A2 135924 hgsc.bcm.edu hg19 7 142724155 142724155 + Missense_Mutation SNP A A C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . OR9A2 NM_001001658 exon1 c.T65G p.L22R TGGTGTAGTCCTT . 146.0 51.0 82.0 0.0 . 52 . . Atlas-SNP GALNTL5 168391 hgsc.bcm.edu hg19 7 151664464 151664464 + Missense_Mutation SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . GALNTL5 NM_145292 exon2 c.G133A p.A45T CTGTCAGCTTGGT . 170.0 116.0 97.0 0.0 . 87 . . Atlas-SNP PAXIP1 22976 hgsc.bcm.edu hg19 7 154760558 154760558 + Silent SNP T T C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PAXIP1 NM_007349 exon7 c.A1353G p.Q451Q CTGCTGTTGCTGT . 130.0 16.0 46.0 0.0 . 150 . . Atlas-SNP PAXIP1 22976 hgsc.bcm.edu hg19 7 154760561 154760561 + Silent SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PAXIP1 NM_007349 exon7 c.G1350A p.Q450Q CTGTTGCTGTGAA . 130.0 12.0 46.0 0.0 . 150 . . Atlas-SNP SLC7A2 6542 hgsc.bcm.edu hg19 8 17421125 17421125 + Missense_Mutation SNP C C A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . SLC7A2 NM_001164771 exon11 c.C1805A p.P602Q TCTTACCATTTTT . 343.0 73.0 126.0 0.0 . 157 . . Atlas-SNP SLC18A1 6570 hgsc.bcm.edu hg19 8 20004896 20004896 + Missense_Mutation SNP G G T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . SLC18A1 NM_003053 exon15 c.C1337A p.S446Y CCGGTGGATGGAC . 79.0 13.0 54.0 0.0 . 68 . . Atlas-SNP NCOA2 10499 hgsc.bcm.edu hg19 8 71039123 71039123 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . NCOA2 NM_006540 exon19 c.G3841A p.G1281S GCATACCACTAGG . 149.0 23.0 71.0 0.0 . 147 . . Atlas-SNP EYA1 2138 hgsc.bcm.edu hg19 8 72233982 72233982 + Silent SNP G G T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . EYA1 NM_172059 exon5 c.C405A p.G135G GGAAATGCCGTAC . 313.0 41.0 112.0 0.0 . 108 . . Atlas-SNP PTDSS1 9791 hgsc.bcm.edu hg19 8 97345763 97345763 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PTDSS1 NM_014754 exon13 c.C1391T p.S464L CCAAGTCAAAAGT . 113.0 17.0 64.0 0.0 . 70 . . Atlas-SNP ZC3H3 23144 hgsc.bcm.edu hg19 8 144550407 144550407 + Missense_Mutation SNP G G T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 ZC3H3,NS,malignant_melanoma,0,1 ZC3H3 NM_015117 exon8 c.C2147A p.P716H GAGAAGGGGCAGG . 58.0 20.0 24.0 0.0 . 75 . . Atlas-SNP CPSF1 29894 hgsc.bcm.edu hg19 8 145623090 145623090 + Missense_Mutation SNP G G C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . CPSF1 NM_013291 exon21 c.C2078G p.S693C ACCTTGGACTGCT . 41.0 10.0 15.0 0.0 . 92 . . Atlas-SNP SH3GL2 6456 hgsc.bcm.edu hg19 9 17795714 17795714 + Silent SNP G G A rs371297260 TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . SH3GL2 NM_003026 exon9 c.G1032A p.V344V TTATGTGGAAATT . 277.0 59.0 109.0 0.0 . 60 . . Atlas-SNP KLHL9 55958 hgsc.bcm.edu hg19 9 21334288 21334288 + Silent SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . KLHL9 NM_018847 exon1 c.C571T p.L191L GTTTTAGAAACTC . 40.0 9.0 42.0 0.0 . 61 . . Atlas-SNP IKBKAP 8518 hgsc.bcm.edu hg19 9 111658811 111658811 + Missense_Mutation SNP C C G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . IKBKAP NM_003640 exon25 c.G2701C p.D901H CCAAATCAAAGTC . 93.0 31.0 82.0 0.0 . 122 . . Atlas-SNP PRKCQ 5588 hgsc.bcm.edu hg19 10 6553138 6553138 + Missense_Mutation SNP A A T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PRKCQ NM_006257 exon3 c.T137A p.I46N TTCTGGATATACA . 98.0 46.0 98.0 0.0 . 113 . . Atlas-SNP C10orf12 26148 hgsc.bcm.edu hg19 10 98743690 98743690 + Missense_Mutation SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . C10orf12 NM_015652 exon1 c.G2543A p.C848Y GGAAATGTAGGAG . 113.0 29.0 82.0 0.0 . 94 . . Atlas-SNP MUC6 4588 hgsc.bcm.edu hg19 11 1017945 1017945 + Missense_Mutation SNP A A G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . MUC6 NM_005961 exon31 c.T4856C p.F1619S GTGGAGAAAGGTG . 771.0 31.0 174.0 0.0 . 408 . . Atlas-SNP TPH1 7166 hgsc.bcm.edu hg19 11 18050909 18050909 + Splice_Site SNP C C G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . TPH1 NM_004179 exon6 c.471-1G>C . TCTCCACTAATGA . 63.0 17.0 60.0 0.0 . 44 . . Atlas-SNP HPS5 11234 hgsc.bcm.edu hg19 11 18339305 18339305 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . HPS5 NM_181507 exon2 c.G101A p.R34H TTTAGACGACTGG . 96.0 22.0 59.0 0.0 . 70 . . Atlas-SNP PHF21A 51317 hgsc.bcm.edu hg19 11 45975168 45975168 + Silent SNP T T C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PHF21A NM_016621 exon10 c.A1005G p.K335K GTGAGATTTAACT . 396.0 190.0 126.0 0.0 . 107 . . Atlas-SNP OR4A16 81327 hgsc.bcm.edu hg19 11 55111334 55111334 + Missense_Mutation SNP C C A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . OR4A16 NM_001005274 exon1 c.C658A p.L220I GTCATCCTAAACT . 342.0 76.0 138.0 0.0 . 120 . . Atlas-SNP OR8H2 390151 hgsc.bcm.edu hg19 11 55872714 55872714 + Missense_Mutation SNP C C A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 OR8H2,NS,carcinoma,0,1 OR8H2 NM_001005200 exon1 c.C196A p.H66N CTTACTCACCTGT . 184.0 18.0 99.0 0.0 . 117 . . Atlas-SNP PIWIL4 143689 hgsc.bcm.edu hg19 11 94353216 94353216 + Missense_Mutation SNP C C A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PIWIL4 NM_152431 exon19 c.C2348A p.T783N GTCCTACCTACTA . 89.0 13.0 88.0 0.0 . 70 . . Atlas-SNP APOC3 345 hgsc.bcm.edu hg19 11 116701502 116701502 + Silent SNP C C T rs372158089 TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . APOC3 NM_000040 exon3 c.C69T p.A23A AGAGGCCGAGGAT . 38.0 6.0 47.0 0.0 . 8 . . Atlas-SNP ERC1 23085 hgsc.bcm.edu hg19 12 1192560 1192560 + Missense_Mutation SNP G G C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ERC1 NM_178039 exon3 c.G900C p.Q300H AAAGCAGACCCTA . 38.0 9.0 49.0 0.0 . 95 . . Atlas-SNP ESPL1 9700 hgsc.bcm.edu hg19 12 53670586 53670586 + Missense_Mutation SNP A A T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ESPL1 NM_012291 exon8 c.A1883T p.H628L CCACCCACCTGGT . 42.0 14.0 15.0 0.0 . 158 . . Atlas-SNP SRGAP1 57522 hgsc.bcm.edu hg19 12 64505683 64505683 + Silent SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . SRGAP1 NM_020762 exon17 c.C2061T p.I687I CATCATCATCCAC . 150.0 18.0 96.0 0.0 . 146 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 70954625 70954625 + Missense_Mutation SNP C C G rs112738980 alternate_allele TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PTPRB NM_001109754 exon17 c.G4258C p.D1420H AAAAGTCAAAGTC . 138.0 15.0 90.0 0.0 . 676 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 70984008 70984008 + Missense_Mutation SNP C C G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PTPRB NM_001109754 exon8 c.G1786C p.D596H CTTTGTCTGGAAC . 227.0 25.0 99.0 0.0 . 676 . . Atlas-SNP GLIPR1 11010 hgsc.bcm.edu hg19 12 75875766 75875766 + Silent SNP T T A rs373244879 alternate_allele TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . GLIPR1 NM_006851 exon2 c.T327A p.S109S TTTTTCTGTGTCT . 143.0 32.0 77.0 0.0 . 33 . . Atlas-SNP TMEM132C 92293 hgsc.bcm.edu hg19 12 129028648 129028648 + Missense_Mutation SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . TMEM132C NM_001136103 exon3 c.G1121A p.R374K GCAACAGGTAAGC . 25.0 15.0 16.0 0.0 . 142 . . Atlas-SNP RNF17 56163 hgsc.bcm.edu hg19 13 25435486 25435486 + Silent SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . RNF17 NM_031277 exon27 c.C3855T p.P1285P TATACCCCAGTTT . 216.0 28.0 114.0 0.0 . 259 . . Atlas-SNP SUPT20H 55578 hgsc.bcm.edu hg19 13 37619483 37619483 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . . NM_017569 exon6 c.G196A p.E66K GCTTCTCTAACAA . 60.0 19.0 67.0 0.0 . . . . Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39265592 39265592 + Missense_Mutation SNP A A G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . FREM2 NM_207361 exon1 c.A4111G p.T1371A AATTTTACCCAGG . 91.0 10.0 76.0 0.0 . 385 . . Atlas-SNP DIAPH3 81624 hgsc.bcm.edu hg19 13 60498943 60498943 + Silent SNP A A C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . DIAPH3 NM_001042517 exon18 c.T2136G p.L712L AAACTTAAGTTCT . 239.0 50.0 148.0 0.0 . 139 . . Atlas-SNP ITGBL1 9358 hgsc.bcm.edu hg19 13 102366888 102366888 + Silent SNP T T G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ITGBL1 NM_004791 exon10 c.T1380G p.G460G TGATGGTCTCATT . 208.0 50.0 105.0 0.0 . 83 . . Atlas-SNP ATP10A 57194 hgsc.bcm.edu hg19 15 25959333 25959333 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ATP10A NM_024490 exon10 c.G1832A p.R611Q AACCTCCGCAGGA . 31.0 12.0 16.0 0.0 . 270 . . Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28457606 28457606 + Nonsense_Mutation SNP T T A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . HERC2 NM_004667 exon43 c.A6910T p.K2304X CCTGTTTAGTCGA . 921.0 162.0 185.0 0.0 . 501 . . Atlas-SNP TYRO3 7301 hgsc.bcm.edu hg19 15 41854881 41854881 + Missense_Mutation SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . TYRO3 NM_006293 exon4 c.G545A p.G182E TCGGGGGACCCGC . 47.0 31.0 42.0 0.0 . 169 . . Atlas-SNP CTDSPL2 51496 hgsc.bcm.edu hg19 15 44811383 44811383 + Missense_Mutation SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . CTDSPL2 NM_016396 exon11 c.G1129A p.E377K TTCCGTGAACATT . 109.0 27.0 75.0 0.0 . 31 . . Atlas-SNP MYO1E 4643 hgsc.bcm.edu hg19 15 59464100 59464100 + Missense_Mutation SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . MYO1E NM_004998 exon22 c.C2476T p.L826F ACCTGAGGGACAC . 87.0 19.0 49.0 0.0 . 99 . . Atlas-SNP ATP2A1 487 hgsc.bcm.edu hg19 16 28913552 28913552 + Missense_Mutation SNP T T C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ATP2A1 NM_004320 exon17 c.T2369C p.V790A TCCCGGTGCAGCT . 135.0 44.0 58.0 0.0 . 116 . . Atlas-SNP ZNF843 283933 hgsc.bcm.edu hg19 16 31448157 31448157 + Missense_Mutation SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ZNF843 NM_001136509 exon2 c.C14T p.P5L GCAAAGGGGAGGC . 41.0 10.0 15.0 0.0 . 14 . . Atlas-SNP SPIRE2 84501 hgsc.bcm.edu hg19 16 89924764 89924764 + Missense_Mutation SNP G G T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . SPIRE2 NM_032451 exon8 c.G1121T p.C374F TGCCCTGCATCCT . 60.0 24.0 41.0 0.0 . 63 . . Atlas-SNP PRDM7 11105 hgsc.bcm.edu hg19 16 90126813 90126813 + Missense_Mutation SNP C C G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PRDM7 NM_001098173 exon9 c.G1169C p.S390T GCCATACTCATCC . 181.0 63.0 122.0 0.0 . 53 . . Atlas-SNP SGSM2 9905 hgsc.bcm.edu hg19 17 2282393 2282393 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . SGSM2 NM_014853 exon23 c.C2963T p.S988L TCTCATCGGAGCA . 155.0 60.0 114.0 0.0 . 60 . . Atlas-SNP SPAG7 9552 hgsc.bcm.edu hg19 17 4864100 4864100 + Missense_Mutation SNP T T C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . SPAG7 NM_004890 exon2 c.A134G p.K45R TCCACTTTCTGTT . 198.0 151.0 136.0 0.0 . 22 . . Atlas-SNP TVP23C 201158 hgsc.bcm.edu hg19 17 15449210 15449210 + Missense_Mutation SNP T T G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . . NM_145301 exon5 c.A351C p.K117N CACAGTTTTATTC . 267.0 99.0 114.0 0.0 . . . . Atlas-SNP MYO15A 51168 hgsc.bcm.edu hg19 17 18058480 18058480 + Missense_Mutation SNP G G A rs367717396 bycluster TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 MYO15A,NS,carcinoma,0,1 MYO15A NM_016239 exon45 c.G8281A p.V2761M CGGGCCGTGGTCA . 48.0 25.0 19.0 0.0 . 268 . . Atlas-SNP TOP3A 7156 hgsc.bcm.edu hg19 17 18188782 18188782 + Silent SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . TOP3A NM_004618 exon14 c.C1650T p.Y550Y GCCCACGTACATC . 169.0 82.0 63.0 0.0 . 85 . . Atlas-SNP SMCR8 140775 hgsc.bcm.edu hg19 17 18221376 18221376 + Missense_Mutation SNP G G T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . SMCR8 NM_144775 exon1 c.G2273T p.G758V GCTATGGCTGCTA . 101.0 26.0 53.0 0.0 . 62 . . Atlas-SNP KRT35 3886 hgsc.bcm.edu hg19 17 39635729 39635729 + Missense_Mutation SNP T T A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . KRT35 NM_002280 exon3 c.A581T p.Q194L ACCAGCTGCCGCA . 184.0 16.0 75.0 0.0 . 58 . . Atlas-SNP MRC2 9902 hgsc.bcm.edu hg19 17 60757607 60757607 + Missense_Mutation SNP C C T rs370911684 alternate_allele TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . MRC2 NM_006039 exon15 c.C2375T p.S792F TGGCCTCCCTGCA . 131.0 30.0 46.0 0.0 . 126 . . Atlas-SNP ABCA8 10351 hgsc.bcm.edu hg19 17 66873752 66873752 + Silent SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ABCA8 NM_007168 exon31 c.G3987A p.A1329A CCACAGCGCGTTC . 120.0 23.0 42.0 0.0 . 213 . . Atlas-SNP CCDC57 284001 hgsc.bcm.edu hg19 17 80136965 80136965 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . CCDC57 NM_198082 exon9 c.G1312A p.E438K CCCTTTCAATGTC . 123.0 24.0 49.0 0.0 . 102 . . Atlas-SNP ARHGAP28 79822 hgsc.bcm.edu hg19 18 6887166 6887166 + Silent SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ARHGAP28 NM_001010000 exon11 c.C987T p.H329H GCCTCACGTCAAA . 106.0 27.0 91.0 0.0 . 181 . . Atlas-SNP AQP4 361 hgsc.bcm.edu hg19 18 24442273 24442273 + Missense_Mutation SNP G G T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . AQP4 NM_001650 exon2 c.C320A p.T107N TTCCTGGTGCACA . 51.0 13.0 37.0 0.0 . 27 . . Atlas-SNP SLC25A23 79085 hgsc.bcm.edu hg19 19 6458301 6458301 + Missense_Mutation SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . SLC25A23 NM_024103 exon2 c.G191A p.G64D AGCCCGCCATCTG . 13.0 12.0 13.0 0.0 . 43 . . Atlas-SNP MAP1S 55201 hgsc.bcm.edu hg19 19 17831786 17831786 + Missense_Mutation SNP G G C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . MAP1S NM_018174 exon2 c.G160C p.D54H AACCTTGATGAAC . 104.0 23.0 65.0 0.0 . 74 . . Atlas-SNP PDCD2L 84306 hgsc.bcm.edu hg19 19 34916969 34916969 + Missense_Mutation SNP C C G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PDCD2L NM_032346 exon7 c.C1021G p.P341A CAGACTCCCATGG . 67.0 23.0 67.0 0.0 . 27 . . Atlas-SNP ZNF227 7770 hgsc.bcm.edu hg19 19 44739856 44739856 + Missense_Mutation SNP A A T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ZNF227 NM_182490 exon6 c.A1273T p.I425F TTTCACATCCATC . 46.0 11.0 40.0 0.0 . 62 . . Atlas-SNP ZNF578 147660 hgsc.bcm.edu hg19 19 53014087 53014087 + Silent SNP T T A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . . NM_001099694 exon6 c.T453A p.P151P CAAGCCTATTAAA . 168.0 50.0 121.0 0.0 . . . . Atlas-SNP ZNF845 91664 hgsc.bcm.edu hg19 19 53854648 53854648 + Silent SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . ZNF845 NM_138374 exon4 c.G720A p.A240A AGGAGCGAAACAA . 149.0 8.0 110.0 0.0 . 101 . . Atlas-SNP TSEN34 79042 hgsc.bcm.edu hg19 19 54695669 54695669 + Missense_Mutation SNP A A G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . TSEN34 NM_024075 exon3 c.A341G p.E114G TCCTGGAGAAGAT . 46.0 10.0 30.0 0.0 . 17 . . Atlas-SNP DSN1 79980 hgsc.bcm.edu hg19 20 35383170 35383170 + Silent SNP C C T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . DSN1 NM_001145315 exon10 c.G957A p.Q319Q ACCGAGCTGTACT . 74.0 17.0 33.0 0.0 . 32 . . Atlas-SNP BACH1 571 hgsc.bcm.edu hg19 21 30699058 30699058 + Missense_Mutation SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . BACH1 NM_206866 exon3 c.G913A p.E305K AAATCAGAAGTGA . 23.0 9.0 36.0 0.0 . 66 . . Atlas-SNP AIRE 326 hgsc.bcm.edu hg19 21 45712255 45712255 + Missense_Mutation SNP C C T rs376901046 bycluster TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . AIRE NM_000383 exon9 c.C1066T p.R356W GAGCCCCGGCCCC . 32.0 11.0 28.0 0.0 . 61 . . Atlas-SNP PI4KA 5297 hgsc.bcm.edu hg19 22 21161719 21161719 + Missense_Mutation SNP T T C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . PI4KA NM_058004 exon10 c.A1099G p.T367A AGGAAGTGTAGTA . 54.0 28.0 45.0 0.0 . 313 . . Atlas-SNP TCF20 6942 hgsc.bcm.edu hg19 22 42607990 42607990 + Missense_Mutation SNP C C G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . TCF20 NM_181492 exon1 c.G3322C p.V1108L CAATTACTCCCTG . 52.0 7.0 38.0 0.0 . 164 . . Atlas-SNP CDKL5 6792 hgsc.bcm.edu hg19 X 18622799 18622799 + Silent SNP G G A novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . CDKL5 NM_003159 exon12 c.G1755A p.L585L TTCACTGTCTGCA . 49.0 32.0 36.0 0.0 . 124 . . Atlas-SNP FMR1NB 158521 hgsc.bcm.edu hg19 X 147084806 147084806 + Silent SNP A A C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . FMR1NB NM_152578 exon2 c.A363C p.A121A TTCCGCATTGGAA . 204.0 13.0 113.0 0.0 . 51 . . Atlas-SNP COX1 5742 hgsc.bcm.edu hg19 MT 7330 7330 + Missense_Mutation SNP T T C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . . ENST00000361624 exon1 c.T1427C p.F476S AAGCCTTCGCTTC . 137.0 21.0 27.0 0.0 . . . . Atlas-SNP FZD9 8326 hgsc.bcm.edu hg19 7 72849249 72849250 + In_Frame_Ins INS - - CAG novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . FZD9 NM_003508 exon1 c.912_913insCAG p.I304delinsIQ . . 110.0 20.0 36.0 0.0 . 51 . . Atlas-Indel,Pindel MAATS1 89876 hgsc.bcm.edu hg19 3 119421979 119421980 + Frame_Shift_Ins INS - - C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . . NM_033364 exon1 c.34_35insC p.A12fs . . 95.0 11.0 34.0 0.0 . . . . Atlas-INDEL ASXL2 55252 hgsc.bcm.edu hg19 2 26101043 26101044 + Frame_Shift_Ins INS - - G novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 ASXL2_ENST00000435504,NS,carcinoma,0,1 ASXL2 NM_018263 exon1 c.49_50insC p.A17fs . . 127.0 10.0 36.0 0.0 . 217 . . Atlas-INDEL OPRL1 4987 hgsc.bcm.edu hg19 20 62729669 62729676 + Frame_Shift_Del DEL CTGGGGCC CTGGGGCC - novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 CTGGGGCC CTGGGGCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . OPRL1 NM_000913 exon4 c.629_636del p.210_212del . . 257.0 19.0 116.0 0.0 . 47 . . Atlas-Indel,Pindel RETNLB 84666 hgsc.bcm.edu hg19 3 108474715 108474716 + Frame_Shift_Ins INS - - C novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . RETNLB NM_032579 exon3 c.246_247insG p.C82fs . . 311.0 27.0 62.0 0.0 . 38 . . Atlas-INDEL TP53 7157 hgsc.bcm.edu hg19 17 7578454 7578455 + In_Frame_Ins INS - - CGCGGA novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 TP53_ENST00000545858,bladder,carcinoma,0,1 TP53 NM_001126112 exon5 c.476_477insTCCGCG p.A159delinsVRA . . 33.0 12.0 32.0 0.0 . 33396 . . Atlas-Indel,Pindel DEPDC1 55635 hgsc.bcm.edu hg19 1 68955231 68955232 + Frame_Shift_Ins INS - - T novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . DEPDC1 NM_017779 exon3 c.375_376insA p.N125fs . . 333.0 29.0 157.0 0.0 . 102 . . Atlas-Indel,Pindel USH2A 7399 hgsc.bcm.edu hg19 1 216369968 216369974 + Frame_Shift_Del DEL TTTCCTC TTTCCTC - novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 TTTCCTC TTTCCTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 USH2A,NS,carcinoma,0,1 USH2A NM_206933 exon19 c.4173_4179del p.1391_1393del . . 10.0 10.0 0.0 0.0 . 1168 . . Pindel BCLAF1 9774 hgsc.bcm.edu hg19 6 136582246 136582439 + Frame_Shift_Del DEL TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT - novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . BCLAF1 NM_014739 exon13 c.2758_3016del p.920_921del . . 14.0 14.0 0.0 0.0 . 203 . . Pindel QRICH2 84074 hgsc.bcm.edu hg19 17 74288539 74288571 + In_Frame_Del DEL CTGCACCAGGTGGGACCAAACCACGCTGATGAT CTGCACCAGGTGGGACCAAACCACGCTGATGAT - novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 CTGCACCAGGTGGGACCAAACCACGCTGATGAT CTGCACCAGGTGGGACCAAACCACGCTGATGAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . QRICH2 NM_032134 exon4 c.1740_1772del p.580_591del . . 12.0 12.0 0.0 0.0 . 143 . . Pindel NCAM1 4684 hgsc.bcm.edu hg19 11 112832332 112832363 + Frame_Shift_Del DEL CATCCCTCCCAGCCAGCAGATTACAATGCTGC CATCCCTCCCAGCCAGCAGATTACAATGCTGC - novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 CATCCCTCCCAGCCAGCAGATTACAATGCTGC CATCCCTCCCAGCCAGCAGATTACAATGCTGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . NCAM1 NM_001242607 wholegene . . . . 22.0 22.0 0.0 0.0 . 372 . . Pindel CDC27 996 hgsc.bcm.edu hg19 17 45234594 45234729 + Frame_Shift_Del DEL CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT - novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . CDC27 NM_001114091 exon6 c.601_631del p.201_211del . . 10.0 10.0 0.0 0.0 . 337 . . Pindel CBWD6 644019 hgsc.bcm.edu hg19 9 69256787 69256893 + Frame_Shift_Del DEL CACATTCCTCACTTCACTGAACAGCAGAGGCAACCGTTTCTAAGTTCCAGCCACTCTTCATAGAGCTCTCCACCTTGGCTGACAGCTAAGGATTTCTCCAGCGCACT CACATTCCTCACTTCACTGAACAGCAGAGGCAACCGTTTCTAAGTTCCAGCCACTCTTCATAGAGCTCTCCACCTTGGCTGACAGCTAAGGATTTCTCCAGCGCACT - novel TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 CACATTCCTCACTTCACTGAACAGCAGAGGCAACCGTTTCTAAGTTCCAGCCACTCTTCATAGAGCTCTCCACCTTGGCTGACAGCTAAGGATTTCTCCAGCGCACT CACATTCCTCACTTCACTGAACAGCAGAGGCAACCGTTTCTAAGTTCCAGCCACTCTTCATAGAGCTCTCCACCTTGGCTGACAGCTAAGGATTTCTCCAGCGCACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . CBWD6 NM_001085457 exon3 c.245_338del p.82_113del . . 18.0 18.0 0.0 0.0 . 19 . . Pindel CELA1 1990 hgsc.bcm.edu hg19 12 51740405 51740433 + In_Frame_Del DEL CTGGACCATATCCACTTACCATAAAGGAC CTGGACCATATCCACTTACCATAAAGGAC - rs372974824 byfrequency;alternate_allele TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 CTGGACCATATCCACTTACCATAAAGGAC CTGGACCATATCCACTTACCATAAAGGAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . CELA1 NM_001971 exon1 c.8_16del p.3_6del . . 20.0 20.0 0.0 0.0 . 39 . -|0.574;CACCAGGAAGCG|0.426 Pindel HLA-A 3105 hgsc.bcm.edu hg19 6 29911899 29911900 + Frame_Shift_Ins INS - - C rs199474609 TCGA-DD-A11A-01A-11D-A12Z-10 TCGA-DD-A11A-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3387dbca-ef9a-4ffe-94f2-e002df056e64 926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5 . HLA-A NM_002116 exon4 c.620_621insC p.D207fs . . 17.0 17.0 0.0 0.0 . 89 . . Pindel