Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm FAM213B 127281 hgsc.bcm.edu hg19 1 2520399 2520399 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 C1orf93,caecum,carcinoma,0,1 . NM_001195736 exon6 c.C643G p.P215A AAGTCCCCAGGCG . 169.0 34.0 46.0 1.0 . . . . Atlas-SNP MMEL1 79258 hgsc.bcm.edu hg19 1 2535696 2535696 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MMEL1 NM_033467 exon10 c.A841G p.M281V ACACCATGAACTG . 235.0 28.0 76.0 0.0 . 64 . . Atlas-SNP ACTRT2 140625 hgsc.bcm.edu hg19 1 2938475 2938475 + Silent SNP C C T rs144521527 TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ACTRT2 NM_080431 exon1 c.C225T p.F75F CCCTTTCGAGCGT . 93.0 11.0 48.0 0.0 . 69 . C|1.000;T|0.000 Atlas-SNP H6PD 9563 hgsc.bcm.edu hg19 1 9305494 9305494 + Nonsense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . H6PD NM_004285 exon2 c.G501A p.W167X CGCCTGGCTGCGG . 63.0 11.0 16.0 0.0 . 71 . . Atlas-SNP SRM 6723 hgsc.bcm.edu hg19 1 11119332 11119332 + Nonsense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SRM NM_003132 exon2 c.C238T p.Q80X TCTCCTGGTAGGA . 178.0 8.0 71.0 0.0 . 18 . . Atlas-SNP DHRS3 9249 hgsc.bcm.edu hg19 1 12677249 12677249 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DHRS3 NM_004753 exon1 c.C105A p.D35E CGACAGGTCCCGC . 120.0 45.0 42.0 0.0 . 18 . . Atlas-SNP TMEM82 388595 hgsc.bcm.edu hg19 1 16073479 16073479 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TMEM82 NM_001013641 exon5 c.T875A p.L292H GCATCCTTGTCTC . 187.0 19.0 72.0 0.0 . 30 . . Atlas-SNP SYF2 25949 hgsc.bcm.edu hg19 1 25558651 25558651 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SYF2 NM_207170 exon2 c.G76T p.A26S GAGCGGCCAGCTC . 110.0 21.0 48.0 0.0 . 13 . . Atlas-SNP PHACTR4 65979 hgsc.bcm.edu hg19 1 28800595 28800595 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PHACTR4 NM_023923 exon6 c.C1383G p.S461R TGACAGCTTTTCT . 150.0 11.0 59.0 0.0 . 64 . . Atlas-SNP EVA1B 55194 hgsc.bcm.edu hg19 1 36788575 36788575 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_018166 exon2 c.C64G p.R22G CACCGCGGATGTG . 244.0 21.0 94.0 0.0 . . . . Atlas-SNP SF3A3 10946 hgsc.bcm.edu hg19 1 38453345 38453345 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SF3A3 NM_006802 exon4 c.G203A p.R68Q TCCTTTCGTAATC . 162.0 11.0 80.0 0.0 . 37 . . Atlas-SNP NRD1 4898 hgsc.bcm.edu hg19 1 52254983 52254983 + Silent SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NRD1 NM_002525 exon33 c.T3585C p.C1195C GATGATACAATCT . 143.0 48.0 77.0 0.0 . 89 . . Atlas-SNP PDE4B 5142 hgsc.bcm.edu hg19 1 66723358 66723358 + Missense_Mutation SNP T T G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PDE4B NM_001037341 exon5 c.T505G p.F169V ACTCCTTTTGCCC . 261.0 23.0 117.0 0.0 . 231 . . Atlas-SNP FPGT 8790 hgsc.bcm.edu hg19 1 74671212 74671212 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FPGT NM_003838 exon4 c.G1481T p.G494V TCTTTGGAGTCTG . 181.0 10.0 79.0 0.0 . 77 . . Atlas-SNP STXBP3 6814 hgsc.bcm.edu hg19 1 109339272 109339272 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . STXBP3 NM_007269 exon15 c.T1280A p.I427N GGTTGATCCAGAA . 203.0 9.0 76.0 0.0 . 44 . . Atlas-SNP ATP1A1 476 hgsc.bcm.edu hg19 1 116933025 116933025 + Missense_Mutation SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ATP1A1 NM_001160233 exon9 c.A1214C p.N405T CAGAGAATCAGAG . 229.0 25.0 70.0 0.0 . 87 . . Atlas-SNP NBPF10 100132406 hgsc.bcm.edu hg19 1 145367800 145367800 + Missense_Mutation SNP G G A rs201525063 bycluster TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 NBPF10,rectum,carcinoma,0,2 NBPF10 NM_001039703 exon83 c.G10396A p.D3466N GAAGAAGATCAAA . 3.0 2.0 1.0 0.0 . 221 . . Atlas-SNP HIST2H2AC 8338 hgsc.bcm.edu hg19 1 149858545 149858545 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HIST2H2AC NM_003517 exon1 c.A21T p.Q7H CAAACAAGGAGGC . 191.0 49.0 53.0 0.0 . 75 . . Atlas-SNP CGN 57530 hgsc.bcm.edu hg19 1 151499552 151499552 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CGN NM_020770 exon10 c.G1865T p.G622V GTGCTGGAGATAC . 315.0 29.0 68.0 0.0 . 106 . . Atlas-SNP C1orf68 100129271 hgsc.bcm.edu hg19 1 152692324 152692324 + Silent SNP C C T rs201318627 TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . C1orf68 NM_001024679 exon1 c.C327T p.Y109Y AACCTACGTGAAG . 399.0 46.0 94.0 0.0 . 19 . C|0.999;T|0.001 Atlas-SNP PGLYRP4 57115 hgsc.bcm.edu hg19 1 153314164 153314164 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PGLYRP4 NM_020393 exon6 c.G564T p.Q188H AAGTGGCTGAACA . 180.0 21.0 44.0 0.0 . 45 . . Atlas-SNP ZBTB7B 51043 hgsc.bcm.edu hg19 1 154988092 154988092 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZBTB7B NM_001252406 exon4 c.G1058A p.S353N ACCTAAGCTCCCT . 267.0 14.0 38.0 0.0 . 69 . . Atlas-SNP ARHGEF11 9826 hgsc.bcm.edu hg19 1 156939122 156939122 + Silent SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ARHGEF11 NM_198236 exon10 c.G777T p.G259G ACTGTCCCCCTCC . 138.0 69.0 30.0 0.0 . 168 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158605719 158605719 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SPTA1 NM_003126 exon38 c.G5416C p.E1806Q CCAACTCTTTGAG . 214.0 9.0 49.0 0.0 . 720 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158651408 158651408 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SPTA1 NM_003126 exon4 c.C440T p.T147I TCCAGGGTCAGCT . 344.0 138.0 80.0 0.0 . 720 . . Atlas-SNP DUSP27 92235 hgsc.bcm.edu hg19 1 167086745 167086745 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 DUSP27,NS,carcinoma,0,1 DUSP27 NM_001080426 exon3 c.C386T p.A129V AAGAGGCGCCCTG . 226.0 34.0 53.0 0.0 . 235 . . Atlas-SNP RFWD2 64326 hgsc.bcm.edu hg19 1 175956209 175956209 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RFWD2 NM_022457 exon18 c.A2003G p.Y668C CCTTTATAGTACA . 300.0 15.0 56.0 0.0 . 67 . . Atlas-SNP TDRD5 163589 hgsc.bcm.edu hg19 1 179561759 179561759 + Silent SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TDRD5 NM_173533 exon2 c.A9G p.E3E GTCTGAACAAGAG . 102.0 41.0 29.0 0.0 . 149 . . Atlas-SNP TDRD5 163589 hgsc.bcm.edu hg19 1 179603595 179603595 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TDRD5 NM_173533 exon8 c.A1130T p.Q377L TAGTTCAGTCAGA . 324.0 16.0 74.0 0.0 . 149 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181548355 181548355 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CACNA1E NM_001205293 exon5 c.A764T p.N255I TGAACAATTCAGG . 400.0 16.0 127.0 0.0 . 778 . . Atlas-SNP DHX9 1660 hgsc.bcm.edu hg19 1 182823304 182823304 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DHX9 NM_001357 exon6 c.A617G p.D206G GTCCTGATCACAA . 367.0 16.0 83.0 0.0 . 114 . . Atlas-SNP DHX9 1660 hgsc.bcm.edu hg19 1 182852382 182852382 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DHX9 NM_001357 exon25 c.A3023T p.E1008V ATAAGGAAAAGAG . 348.0 17.0 103.0 0.0 . 114 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186007150 186007150 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HMCN1 NM_031935 exon37 c.C5834A p.A1945D AGGCAGCTGGAAA . 244.0 99.0 76.0 0.0 . 797 . . Atlas-SNP KIF21B 23046 hgsc.bcm.edu hg19 1 200946358 200946358 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 KIF21B,NS,carcinoma,0,1 KIF21B NM_001252102 exon31 c.G4307T p.R1436L CAGATGCGGACGG . 137.0 10.0 30.0 0.0 . 208 . . Atlas-SNP DYRK3 8444 hgsc.bcm.edu hg19 1 206820946 206820946 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DYRK3 NM_003582 exon3 c.G403T p.A135S TCCAAGGCACCCA . 432.0 35.0 79.0 0.0 . 146 . . Atlas-SNP LAMB3 3914 hgsc.bcm.edu hg19 1 209789918 209789918 + Nonsense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . LAMB3 NM_000228 exon22 c.C3280T p.Q1094X AACTCTGACCCAA . 357.0 20.0 89.0 0.0 . 136 . . Atlas-SNP HHIPL2 79802 hgsc.bcm.edu hg19 1 222705320 222705320 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HHIPL2 NM_024746 exon6 c.G1711C p.E571Q CATCTTCAGCAAA . 225.0 19.0 40.0 0.0 . 122 . . Atlas-SNP C1orf65 164127 hgsc.bcm.edu hg19 1 223568584 223568584 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . C1orf65 NM_152610 exon1 c.C1767T p.L589L GAAGCTCCCTCAG . 207.0 61.0 50.0 0.0 . 71 . . Atlas-SNP WDR26 80232 hgsc.bcm.edu hg19 1 224619473 224619473 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . WDR26 NM_001115113 exon2 c.G433T p.D145Y GGAGATCAACAGT . 218.0 9.0 63.0 0.0 . 104 . . Atlas-SNP DNAH14 127602 hgsc.bcm.edu hg19 1 225332286 225332286 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DNAH14 NM_001373 exon28 c.C4645A p.P1549T GCCGGTCCAGCTG . 121.0 10.0 39.0 0.0 . 300 . . Atlas-SNP CDC42BPA 8476 hgsc.bcm.edu hg19 1 227216748 227216748 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CDC42BPA NM_003607 exon29 c.G3937C p.A1313P TGAGAGCTCCATG . 103.0 10.0 18.0 0.0 . 528 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228474524 228474524 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OBSCN NM_001271223 exon40 c.G10615T p.G3539C ACAGAGGGTGAGG . 249.0 29.0 41.0 0.0 . 2142 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228474710 228474710 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OBSCN NM_001271223 exon40 c.G10801T p.A3601S GGGGGCGCCTGCA . 191.0 26.0 20.0 0.0 . 2142 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228495849 228495849 + Silent SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OBSCN NM_001271223 exon58 c.G15375T p.A5125A TGATGCGGAGGTG . 261.0 113.0 75.0 0.0 . 2142 . . Atlas-SNP SIPA1L2 57568 hgsc.bcm.edu hg19 1 232650005 232650005 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SIPA1L2 NM_020808 exon1 c.G1081T p.A361S CAGATGCCCCAGT . 140.0 6.0 40.0 0.0 . 218 . . Atlas-SNP RBM34 23029 hgsc.bcm.edu hg19 1 235318339 235318339 + Missense_Mutation SNP C C A rs200657743 bycluster;alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RBM34 NM_001161533 exon4 c.G454T p.V152L CTGCTACTTTAAC . 751.0 57.0 155.0 0.0 . 41 . . Atlas-SNP ZP4 57829 hgsc.bcm.edu hg19 1 238048491 238048491 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 ZP4,NS,carcinoma,0,1 ZP4 NM_021186 exon9 c.G1285T p.V429L TCTCCACTGTAGG . 291.0 74.0 83.0 0.0 . 161 . . Atlas-SNP CHRM3 1131 hgsc.bcm.edu hg19 1 240071656 240071656 + Missense_Mutation SNP G G T rs202097685 alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CHRM3 NM_000740 exon5 c.G905T p.R302L TGAAACGCTCCAA . 195.0 31.0 35.0 0.0 . 118 . . Atlas-SNP TPO 7173 hgsc.bcm.edu hg19 2 1497607 1497607 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TPO NM_001206744 exon11 c.C1802A p.P601H GCCTGCCTCGCCT . 103.0 12.0 32.0 0.0 . 224 . . Atlas-SNP KCNF1 3754 hgsc.bcm.edu hg19 2 11053359 11053359 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 KCNF1,right_lower_lobe,carcinoma,0,1 KCNF1 NM_002236 exon1 c.C807T p.S269S CGTGAGCCTCACG . 71.0 5.0 51.0 0.0 . 70 . . Atlas-SNP KCNF1 3754 hgsc.bcm.edu hg19 2 11053487 11053487 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KCNF1 NM_002236 exon1 c.C935T p.T312I TGCAGACCCTCAC . 160.0 8.0 36.0 0.0 . 70 . . Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21231053 21231053 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . APOB NM_000384 exon26 c.C8687T p.P2896L AGTTTGGGGATGT . 230.0 12.0 117.0 0.0 . 761 . . Atlas-SNP UBXN2A 165324 hgsc.bcm.edu hg19 2 24194229 24194229 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . UBXN2A NM_181713 exon3 c.A125T p.E42V TTTTTGAGGAAGC . 113.0 13.0 70.0 0.0 . 20 . . Atlas-SNP TRIM54 57159 hgsc.bcm.edu hg19 2 27528584 27528584 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TRIM54 NM_032546 exon6 c.G868C p.G290R GTCCGCGGCCTCA . 165.0 33.0 36.0 0.0 . 35 . . Atlas-SNP TRMT61B 55006 hgsc.bcm.edu hg19 2 29075273 29075273 + Splice_Site SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TRMT61B NM_017910 exon5 c.1085+1G>A . TACTCACTTTACT . 158.0 12.0 85.0 0.0 . 28 . . Atlas-SNP GALNT14 79623 hgsc.bcm.edu hg19 2 31165150 31165150 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GALNT14 NM_001253826 exon10 c.G863T p.G288V AAGAGCCCTCCAG . 45.0 17.0 39.0 0.0 . 103 . . Atlas-SNP GALNT14 79623 hgsc.bcm.edu hg19 2 31165151 31165151 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GALNT14 NM_001253826 exon10 c.G862T p.G288W AGAGCCCTCCAGC . 44.0 16.0 38.0 0.0 . 103 . . Atlas-SNP XDH 7498 hgsc.bcm.edu hg19 2 31591490 31591490 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . XDH NM_000379 exon19 c.G2017T p.A673S TGTCAGCAACCAC . 135.0 6.0 90.0 0.0 . 191 . . Atlas-SNP SRSF7 6432 hgsc.bcm.edu hg19 2 38976737 38976737 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SRSF7 NM_001195446 exon3 c.A320G p.Y107C CACTCATAGCATC . 299.0 17.0 101.0 0.0 . 29 . . Atlas-SNP ABCG5 64240 hgsc.bcm.edu hg19 2 44053584 44053584 + Missense_Mutation SNP T T G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ABCG5 NM_022436 exon6 c.A711C p.E237D AGCCAGTTCCACC . 146.0 10.0 58.0 0.0 . 72 . . Atlas-SNP SPTBN1 6711 hgsc.bcm.edu hg19 2 54855371 54855371 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SPTBN1 NM_003128 exon13 c.C1782G p.F594L GAAGTTCGCAACA . 63.0 6.0 39.0 0.0 . 378 . . Atlas-SNP MDH1 4190 hgsc.bcm.edu hg19 2 63824634 63824634 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MDH1 NM_001199111 exon4 c.T355A p.L119I AAAGATTTACTGA . 266.0 106.0 119.0 0.0 . 29 . . Atlas-SNP C2orf42 54980 hgsc.bcm.edu hg19 2 70408657 70408657 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . C2orf42 NM_017880 exon3 c.C461T p.S154L AGGACCGAGCTCT . 49.0 27.0 19.0 0.0 . 30 . . Atlas-SNP CLEC4F 165530 hgsc.bcm.edu hg19 2 71047619 71047619 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CLEC4F NM_173535 exon1 c.C37A p.Q13K CACACTGGTTATC . 141.0 20.0 56.0 0.0 . 95 . . Atlas-SNP POLR1A 25885 hgsc.bcm.edu hg19 2 86259502 86259502 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . POLR1A NM_015425 exon29 c.G4165T p.E1389X CCTGCTCTCCCTG . 118.0 32.0 94.0 0.0 . 137 . . Atlas-SNP CNOT11 55571 hgsc.bcm.edu hg19 2 101885756 101885756 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_017546 exon7 c.A1414T p.I472L TTGTTTATAGAAG . 223.0 21.0 103.0 0.0 . . . . Atlas-SNP TGFBRAP1 9392 hgsc.bcm.edu hg19 2 105924415 105924415 + Missense_Mutation SNP C C A rs369840873 alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TGFBRAP1 NM_004257 exon2 c.G344T p.R115L TTGATGCGGGCCC . 128.0 16.0 17.0 0.0 . 70 . . Atlas-SNP SLC5A7 60482 hgsc.bcm.edu hg19 2 108622601 108622601 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SLC5A7 NM_021815 exon7 c.G838A p.G280R GCTTTCGGGTGCC . 149.0 23.0 37.0 0.0 . 109 . . Atlas-SNP RANBP2 5903 hgsc.bcm.edu hg19 2 109381074 109381074 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RANBP2 NM_006267 exon20 c.G4079A p.S1360N GTAACAGCTGCTC . 217.0 22.0 60.0 0.0 . 488 . . Atlas-SNP WDR33 55339 hgsc.bcm.edu hg19 2 128474768 128474768 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 WDR33,scalp,malignant_melanoma,0,1 WDR33 NM_018383 exon17 c.C2830A p.P944T GAGGGGGAATGCG . 181.0 23.0 77.0 0.0 . 136 . . Atlas-SNP NCKAP5 344148 hgsc.bcm.edu hg19 2 133547663 133547663 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NCKAP5 NM_207481 exon13 c.G1025T p.S342I CAGGTGCTTGAAA . 185.0 16.0 60.0 0.0 . 322 . . Atlas-SNP CACNB4 785 hgsc.bcm.edu hg19 2 152732958 152732958 + Missense_Mutation SNP C C G rs376364352 TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CACNB4 NM_001145798 exon5 c.G503C p.R168T CGTCCTCTTTTTT . 149.0 15.0 84.0 0.0 . 108 . . Atlas-SNP PRPF40A 55660 hgsc.bcm.edu hg19 2 153573934 153573934 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PRPF40A NM_017892 exon1 c.G20T p.R7L CGCCGGCGGCCAC . 189.0 31.0 25.0 0.0 . 149 . . Atlas-SNP NR4A2 4929 hgsc.bcm.edu hg19 2 157186659 157186659 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NR4A2 NM_006186 exon3 c.G40A p.G14R TGGCTCCTTGAGG . 155.0 17.0 61.0 0.0 . 82 . . Atlas-SNP LY75 4065 hgsc.bcm.edu hg19 2 160737645 160737645 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . LY75 NM_002349 exon8 c.G1353T p.E451D ATTTGGCTCATTC . 258.0 18.0 87.0 0.0 . 151 . . Atlas-SNP LY75 4065 hgsc.bcm.edu hg19 2 160737646 160737646 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . LY75 NM_002349 exon8 c.A1352T p.E451V TTTGGCTCATTCT . 259.0 18.0 87.0 0.0 . 151 . . Atlas-SNP PLA2R1 22925 hgsc.bcm.edu hg19 2 160833216 160833216 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PLA2R1 NM_001195641 exon16 c.T2417C p.I806T AACGGAATCTTGG . 291.0 21.0 96.0 0.0 . 153 . . Atlas-SNP SCN2A 6326 hgsc.bcm.edu hg19 2 166211045 166211045 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SCN2A NM_001040143 exon16 c.A3263G p.D1088G TCGTGGATGAAAG . 267.0 15.0 102.0 0.0 . 589 . . Atlas-SNP CSRNP3 80034 hgsc.bcm.edu hg19 2 166514403 166514403 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CSRNP3 NM_001172173 exon5 c.T281A p.M94K TGGGGATGTCCAG . 133.0 46.0 40.0 0.0 . 73 . . Atlas-SNP BBS5 129880 hgsc.bcm.edu hg19 2 170344622 170344622 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . BBS5 NM_152384 exon5 c.C384A p.H128Q AGTACACAGGTAT . 237.0 79.0 117.0 0.0 . 27 . . Atlas-SNP UBR3 130507 hgsc.bcm.edu hg19 2 170806152 170806152 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . UBR3 NM_172070 exon23 c.A3122G p.E1041G TAGCAGAACGTAG . 101.0 5.0 48.0 0.0 . 182 . . Atlas-SNP CHRNA1 1134 hgsc.bcm.edu hg19 2 175624066 175624066 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CHRNA1 NM_001039523 exon3 c.T227A p.L76Q TGTTTCAGACGCA . 198.0 13.0 65.0 0.0 . 92 . . Atlas-SNP HOXD4 3233 hgsc.bcm.edu hg19 2 177017653 177017653 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HOXD4 NM_014621 exon2 c.G751C p.D251H CACACGGACCTGA . 170.0 18.0 43.0 0.0 . 32 . . Atlas-SNP HIBCH 26275 hgsc.bcm.edu hg19 2 191155206 191155206 + Missense_Mutation SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HIBCH NM_014362 exon5 c.T310G p.S104A CTTCCGAGATCAC . 122.0 17.0 64.0 0.0 . 28 . . Atlas-SNP MYO1B 4430 hgsc.bcm.edu hg19 2 192160953 192160953 + Splice_Site SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MYO1B NM_012223 exon3 c.251+1G>T . TCACATGTAAGTA . 146.0 61.0 58.0 0.0 . 160 . . Atlas-SNP SLC39A10 57181 hgsc.bcm.edu hg19 2 196593015 196593015 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SLC39A10 NM_020342 exon9 c.C2279A p.T760K ACATCACACTTTG . 387.0 53.0 150.0 0.0 . 89 . . Atlas-SNP DNAH7 56171 hgsc.bcm.edu hg19 2 196825086 196825086 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DNAH7 NM_018897 exon18 c.T2789C p.L930S GATGCCAAAATAA . 86.0 10.0 53.0 0.0 . 512 . . Atlas-SNP SF3B1 23451 hgsc.bcm.edu hg19 2 198267360 198267360 + Missense_Mutation SNP T T G rs374250186 alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 SF3B1,NS,malignant_melanoma,0,27 SF3B1 NM_012433 exon14 c.A1997C p.K666T ACAATCTTAATAC . 242.0 20.0 99.0 0.0 . 1038 . . Atlas-SNP DYTN 391475 hgsc.bcm.edu hg19 2 207530732 207530732 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DYTN NM_001093730 exon10 c.C1002A p.N334K GTATTGGTTTAAC . 220.0 21.0 114.0 0.0 . 168 . . Atlas-SNP IDH1 3417 hgsc.bcm.edu hg19 2 209113113 209113113 + Missense_Mutation SNP G G A rs121913499 bycluster TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 IDH1,NS,haematopoietic_neoplasm,0,788 IDH1 NM_005896 exon4 c.C394T p.R132C CATGACGACCTAT . 267.0 17.0 91.0 0.0 . 6310 . . Atlas-SNP ERBB4 2066 hgsc.bcm.edu hg19 2 212615384 212615384 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 ERBB4,NS,carcinoma,0,1 ERBB4 NM_001042599 exon5 c.C602A p.T201K TTTTCTGTGGGTC . 124.0 15.0 54.0 0.0 . 480 . . Atlas-SNP ABCA12 26154 hgsc.bcm.edu hg19 2 215823013 215823013 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ABCA12 NM_173076 exon41 c.C6105A p.F2035L ATAAATGAAGTTT . 139.0 16.0 71.0 0.0 . 368 . . Atlas-SNP ABCA12 26154 hgsc.bcm.edu hg19 2 215843664 215843664 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ABCA12 NM_173076 exon32 c.G4841A p.G1614E AGCTCTCCCCCAA . 320.0 21.0 106.0 0.0 . 368 . . Atlas-SNP FAM124B 79843 hgsc.bcm.edu hg19 2 225266346 225266346 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 FAM124B_ENST00000409685,NS,carcinoma,0,2 FAM124B NM_024785 exon1 c.G140C p.R47P CTGGCCCGTTCAG . 118.0 27.0 36.0 0.0 . 71 . . Atlas-SNP SLC19A3 80704 hgsc.bcm.edu hg19 2 228560620 228560620 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SLC19A3 NM_025243 exon4 c.T1157C p.L386P GTTATAAGAAGCA . 87.0 36.0 55.0 0.0 . 62 . . Atlas-SNP USP40 55230 hgsc.bcm.edu hg19 2 234394446 234394446 + Silent SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . USP40 NM_018218 exon28 c.C3408T p.P1136P CTTTTCGGGAAAG . 266.0 107.0 113.0 0.0 . 174 . . Atlas-SNP COL6A3 1293 hgsc.bcm.edu hg19 2 238249117 238249117 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . COL6A3 NM_004369 exon38 c.G8442A p.R2814R CAACAGCCTCCCG . 46.0 20.0 19.0 0.0 . 608 . . Atlas-SNP CNTN6 27255 hgsc.bcm.edu hg19 3 1371531 1371531 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 CNTN6,colon,carcinoma,0,1 CNTN6 NM_014461 exon11 c.G1276A p.D426N GGTGGGGATATTG . 436.0 26.0 142.0 1.0 . 245 . . Atlas-SNP CNTN6 27255 hgsc.bcm.edu hg19 3 1371532 1371532 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CNTN6 NM_014461 exon11 c.A1277T p.D426V GTGGGGATATTGT . 442.0 26.0 143.0 0.0 . 245 . . Atlas-SNP ITPR1 3708 hgsc.bcm.edu hg19 3 4732940 4732940 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ITPR1 NM_001099952 exon32 c.G3914A p.R1305Q ACGGTCGGAATGT . 319.0 23.0 97.0 0.0 . 659 . . Atlas-SNP BRPF1 7862 hgsc.bcm.edu hg19 3 9776191 9776191 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . BRPF1 NM_001003694 exon2 c.G367A p.E123K GAGGATGAGGAAG . 154.0 20.0 65.0 0.0 . 104 . . Atlas-SNP ATP2B2 491 hgsc.bcm.edu hg19 3 10401567 10401567 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ATP2B2 NM_001001331 exon13 c.A1900G p.K634E CTTACTTCTTGAG . 80.0 5.0 40.0 0.0 . 304 . . Atlas-SNP ATP2B2 491 hgsc.bcm.edu hg19 3 10443888 10443888 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ATP2B2 NM_001683 exon4 c.G542T p.G181V TGCAGGCCCCGGA . 99.0 14.0 34.0 0.0 . 304 . . Atlas-SNP RFTN1 23180 hgsc.bcm.edu hg19 3 16368288 16368288 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RFTN1 NM_015150 exon8 c.G1242A p.K414K GGTAGTCTTGACG . 61.0 4.0 28.0 0.0 . 79 . . Atlas-SNP TRIM71 131405 hgsc.bcm.edu hg19 3 32915309 32915309 + Splice_Site SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TRIM71 NM_001039111 exon2 c.853-1G>A . TCCCCAGGTGCTG . 214.0 13.0 103.0 0.0 . 73 . . Atlas-SNP GLB1 2720 hgsc.bcm.edu hg19 3 33106973 33106973 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GLB1 NM_001135602 exon3 c.G322A p.A108T AACTGGCCCTCCA . 339.0 42.0 122.0 0.0 . 51 . . Atlas-SNP DLEC1 9940 hgsc.bcm.edu hg19 3 38135225 38135225 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DLEC1 NM_007337 exon12 c.C1886T p.T629M GGTCCACGGCTAG . 184.0 18.0 70.0 0.0 . 278 . . Atlas-SNP TTC21A 199223 hgsc.bcm.edu hg19 3 39171742 39171742 + Nonsense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TTC21A NM_145755 exon17 c.G2233T p.E745X CAGCCCGAGAAGG . 128.0 25.0 49.0 0.0 . 96 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41268766 41268766 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 CTNNB1,colon,carcinoma,-1,11 CTNNB1 NM_001098209 exon7 c.A1004T p.K335I ACGAAAAACTACT . 138.0 10.0 68.0 0.0 . 4904 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41275047 41275047 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CTNNB1 NM_001098209 exon9 c.C1213T p.L405F GGGACTCTTGTTC . 110.0 6.0 51.0 0.0 . 4904 . . Atlas-SNP CDCP1 64866 hgsc.bcm.edu hg19 3 45153871 45153871 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CDCP1 NM_178181 exon3 c.C359G p.T120S TTGAGGGTAGGCA . 121.0 57.0 64.0 0.0 . 61 . . Atlas-SNP TRAIP 10293 hgsc.bcm.edu hg19 3 49867199 49867199 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TRAIP NM_005879 exon13 c.G1087A p.E363K GGGACTCCTGCAG . 95.0 9.0 31.0 0.0 . 47 . . Atlas-SNP NAT6 24142 hgsc.bcm.edu hg19 3 50334446 50334446 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NAT6 NM_012191 exon2 c.G515T p.R172L AAGCCACGGCCCC . 30.0 10.0 9.0 0.0 . 14 . . Atlas-SNP TMEM115 11070 hgsc.bcm.edu hg19 3 50395815 50395815 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TMEM115 NM_007024 exon1 c.T680A p.F227Y GGGAAGAAAGTGG . 121.0 9.0 55.0 0.0 . 20 . . Atlas-SNP STAB1 23166 hgsc.bcm.edu hg19 3 52549455 52549455 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . STAB1 NM_015136 exon37 c.G3881T p.S1294I GGAAGAGCTGTGT . 106.0 16.0 39.0 0.0 . 178 . . Atlas-SNP PBRM1 55193 hgsc.bcm.edu hg19 3 52588770 52588770 + Missense_Mutation SNP C C A rs143564112 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 PBRM1_ENST00000356770,NS,lymphoid_neoplasm,0,1 PBRM1 NM_018313 exon27 c.G4258T p.V1420L CAGGCACACCTGG . 250.0 12.0 82.0 0.0 . 1252 . C|0.999;T|0.001 Atlas-SNP PBRM1 55193 hgsc.bcm.edu hg19 3 52662939 52662939 + Nonsense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PBRM1 NM_018313 exon13 c.C1414T p.R472X GAACTCGCTTGTA . 138.0 8.0 75.0 0.0 . 1252 . . Atlas-SNP PTPRG 5793 hgsc.bcm.edu hg19 3 61975392 61975392 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PTPRG NM_002841 exon3 c.T284C p.V95A CGCGTGTTGGGGA . 124.0 18.0 81.0 0.0 . 153 . . Atlas-SNP ROBO2 6092 hgsc.bcm.edu hg19 3 77614146 77614146 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ROBO2 NM_002942 exon12 c.T1724C p.V575A ACCATGTAAAGAC . 68.0 18.0 33.0 0.0 . 527 . . Atlas-SNP ROBO2 6092 hgsc.bcm.edu hg19 3 77629195 77629195 + Missense_Mutation SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ROBO2 NM_002942 exon16 c.A2426C p.Q809P GTATTCAATACCG . 191.0 37.0 78.0 0.0 . 527 . . Atlas-SNP ROBO2 6092 hgsc.bcm.edu hg19 3 77651546 77651546 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 ROBO2_ENST00000487694,NS,carcinoma,0,6 ROBO2 NM_002942 exon20 c.G3040A p.D1014N GCTGTCGATCTGC . 269.0 12.0 87.0 0.0 . 527 . . Atlas-SNP CADM2 253559 hgsc.bcm.edu hg19 3 85984981 85984981 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CADM2 NM_001167675 exon7 c.G765T p.L255F AATTTTGACTTGT . 393.0 34.0 126.0 0.0 . 195 . . Atlas-SNP CADM2 253559 hgsc.bcm.edu hg19 3 86114753 86114753 + Splice_Site SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CADM2 NM_001167674 exon9 c.1064-2A>G . TTTTCCAGATCCT . 210.0 13.0 86.0 0.0 . 195 . . Atlas-SNP EPHA6 285220 hgsc.bcm.edu hg19 3 97202883 97202883 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . EPHA6 NM_001080448 exon10 c.T2180C p.I727T TTCGTATTGAGAG . 177.0 11.0 76.0 0.0 . 439 . . Atlas-SNP TRMT10C 54931 hgsc.bcm.edu hg19 3 101283884 101283884 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_017819 exon2 c.G259A p.D87N AGTAAGGATGAAG . 153.0 15.0 58.0 0.0 . . . . Atlas-SNP IFT57 55081 hgsc.bcm.edu hg19 3 107937444 107937444 + Silent SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . IFT57 NM_018010 exon3 c.A432G p.V144V ATAGCATACATGT . 226.0 99.0 104.0 0.0 . 44 . . Atlas-SNP TMPRSS7 344805 hgsc.bcm.edu hg19 3 111797619 111797619 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TMPRSS7 NM_001042575 exon15 c.C1877T p.A626V AGCAAGCGGAGGT . 233.0 14.0 74.0 0.0 . 126 . . Atlas-SNP ADPRH 141 hgsc.bcm.edu hg19 3 119305482 119305482 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 ADPRH,right_upper_lobe,carcinoma,0,1 ADPRH NM_001125 exon4 c.C649T p.L217F GAAAATCTTCAAC . 42.0 2.0 19.0 0.0 . 33 . . Atlas-SNP GTF2E1 2960 hgsc.bcm.edu hg19 3 120469757 120469757 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GTF2E1 NM_005513 exon2 c.G358A p.D120N GAGAGAGATTCGA . 175.0 14.0 64.0 0.0 . 52 . . Atlas-SNP SEMA5B 54437 hgsc.bcm.edu hg19 3 122629075 122629075 + Missense_Mutation SNP G G A rs369693926 TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SEMA5B NM_001256347 exon23 c.C3533T p.T1178M GTAGTCGTGTACA . 529.0 27.0 145.0 0.0 . 303 . . Atlas-SNP KALRN 8997 hgsc.bcm.edu hg19 3 124165646 124165646 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KALRN NM_003947 exon21 c.C3460G p.L1154V TTTTACCTCTCAA . 116.0 12.0 51.0 0.0 . 556 . . Atlas-SNP PLXND1 23129 hgsc.bcm.edu hg19 3 129275500 129275500 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PLXND1 NM_015103 exon35 c.T5621C p.M1874T TCTGCCATGGCCA . 291.0 27.0 83.0 0.0 . 149 . . Atlas-SNP COL6A6 131873 hgsc.bcm.edu hg19 3 130286897 130286897 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . COL6A6 NM_001102608 exon5 c.A1850G p.K617R CTTGCAAAGAGAT . 149.0 11.0 52.0 0.0 . 497 . . Atlas-SNP KY 339855 hgsc.bcm.edu hg19 3 134348537 134348537 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KY NM_178554 exon4 c.G263T p.G88V TGTGTCCCTACAA . 162.0 12.0 63.0 0.0 . 92 . . Atlas-SNP CEP70 80321 hgsc.bcm.edu hg19 3 138219253 138219253 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CEP70 NM_024491 exon15 c.C1525T p.L509F CTAAGAGTTCTTG . 366.0 28.0 116.0 0.0 . 51 . . Atlas-SNP CLSTN2 64084 hgsc.bcm.edu hg19 3 140281020 140281020 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CLSTN2 NM_022131 exon13 c.A2082T p.L694F TAACTTAGATTTC . 144.0 16.0 47.0 0.0 . 190 . . Atlas-SNP TFDP2 7029 hgsc.bcm.edu hg19 3 141678612 141678612 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TFDP2 NM_001178139 exon11 c.G955T p.G319X ACATTCCCATCCG . 157.0 14.0 61.0 0.0 . 44 . . Atlas-SNP TFDP2 7029 hgsc.bcm.edu hg19 3 141678613 141678613 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TFDP2 NM_001178139 exon11 c.G954T p.M318I CATTCCCATCCGC . 159.0 15.0 61.0 0.0 . 44 . . Atlas-SNP CPB1 1360 hgsc.bcm.edu hg19 3 148559613 148559613 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CPB1 NM_001871 exon6 c.G478A p.G160S TAGGTTGGCAAAG . 224.0 21.0 98.0 0.0 . 74 . . Atlas-SNP SUCNR1 56670 hgsc.bcm.edu hg19 3 151598552 151598552 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SUCNR1 NM_033050 exon3 c.G221T p.C74F TTCTGTGCACCCT . 305.0 34.0 103.0 0.0 . 31 . . Atlas-SNP GMPS 8833 hgsc.bcm.edu hg19 3 155643090 155643090 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GMPS NM_003875 exon12 c.A1495T p.M499L AAGCTGATGCAAA . 624.0 73.0 159.0 0.0 . 70 . . Atlas-SNP SHOX2 6474 hgsc.bcm.edu hg19 3 157820591 157820591 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SHOX2 NM_003030 exon3 c.G503A p.R168Q TTGGTCCGACTTC . 218.0 11.0 123.0 0.0 . 84 . . Atlas-SNP SI 6476 hgsc.bcm.edu hg19 3 164750329 164750329 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SI NM_001041 exon24 c.C2717T p.T906I TCATAAGTGAAAT . 115.0 7.0 60.0 0.0 . 500 . . Atlas-SNP WDR49 151790 hgsc.bcm.edu hg19 3 167250760 167250760 + Missense_Mutation SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . WDR49 NM_178824 exon8 c.T904G p.Y302D CATCATAACTCCC . 125.0 41.0 56.0 0.0 . 188 . . Atlas-SNP WDR49 151790 hgsc.bcm.edu hg19 3 167293931 167293931 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . WDR49 NM_178824 exon4 c.A261T p.R87S CCAGAGTCTCAAA . 115.0 54.0 54.0 0.0 . 188 . . Atlas-SNP NLGN1 22871 hgsc.bcm.edu hg19 3 173322666 173322666 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 NLGN1,caecum,adenoma,0,3 NLGN1 NM_014932 exon3 c.G278T p.R93L GGGAACGTCGTTT . 149.0 20.0 86.0 0.0 . 209 . . Atlas-SNP NLGN1 22871 hgsc.bcm.edu hg19 3 173525610 173525610 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NLGN1 NM_014932 exon4 c.C634A p.L212I TATCGACTTGGAG . 194.0 17.0 74.0 0.0 . 209 . . Atlas-SNP PIK3CA 5290 hgsc.bcm.edu hg19 3 178916692 178916692 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PIK3CA NM_006218 exon2 c.C79A p.P27T TTACTACCAAATG . 143.0 14.0 42.0 0.0 . 8460 . . Atlas-SNP EIF4A2 1974 hgsc.bcm.edu hg19 3 186504304 186504304 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 EIF4A2,NS,carcinoma,0,1 EIF4A2 NM_001967 exon7 c.C641T p.S214F TGCTTTCTGCCAC . 363.0 27.0 139.0 0.0 . 55 . . Atlas-SNP MB21D2 151963 hgsc.bcm.edu hg19 3 192516472 192516472 + Silent SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MB21D2 NM_178496 exon2 c.C1179A p.V393V AAGCATGACTGTC . 42.0 20.0 23.0 0.0 . 75 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195511217 195511217 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MUC4 NM_018406 exon2 c.G7234A p.G2412S CGTGACCTGTGGA . 123.0 5.0 47.0 0.0 . 1505 . . Atlas-SNP ZDHHC19 131540 hgsc.bcm.edu hg19 3 195935366 195935366 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZDHHC19 NM_001039617 exon4 c.G474A p.M158I AAGCAGCATGAAG . 241.0 30.0 78.0 0.0 . 25 . . Atlas-SNP WHSC1 7468 hgsc.bcm.edu hg19 4 1957858 1957858 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . WHSC1 NM_133335 exon15 c.G2824T p.G942W ATGGAGGGGGACC . 180.0 14.0 42.0 0.0 . 180 . . Atlas-SNP FAM193A 8603 hgsc.bcm.edu hg19 4 2717767 2717767 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FAM193A NM_001256666 exon19 c.A3640G p.K1214E CTACCTAAAGATA . 187.0 74.0 147.0 0.0 . 103 . . Atlas-SNP HS3ST1 9957 hgsc.bcm.edu hg19 4 11400952 11400952 + Silent SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HS3ST1 NM_005114 exon2 c.T678A p.P226P GATCTCAGGGAAG . 66.0 34.0 19.0 0.0 . 41 . . Atlas-SNP CD38 952 hgsc.bcm.edu hg19 4 15839760 15839760 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CD38 NM_001775 exon5 c.T631C p.S211P AATGGATCCCGCA . 86.0 11.0 53.0 0.0 . 36 . . Atlas-SNP PCDH7 5099 hgsc.bcm.edu hg19 4 30724910 30724910 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PCDH7 NM_032457 exon1 c.C1866A p.S622R GGGCAGCACTACG . 100.0 18.0 32.0 0.0 . 215 . . Atlas-SNP KIAA1239 57495 hgsc.bcm.edu hg19 4 37447730 37447730 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KIAA1239 NM_001144990 exon7 c.A4120G p.T1374A ATGGTGACATCAG . 107.0 17.0 38.0 0.0 . 79 . . Atlas-SNP KIAA1239 57495 hgsc.bcm.edu hg19 4 37447823 37447823 + Missense_Mutation SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KIAA1239 NM_001144990 exon7 c.A4213C p.I1405L CTGCTGATTACAC . 91.0 14.0 21.0 0.0 . 79 . . Atlas-SNP RFC1 5981 hgsc.bcm.edu hg19 4 39310299 39310299 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RFC1 NM_002913 exon13 c.G1842T p.W614C TCGGAGCCAGCGT . 352.0 33.0 139.0 0.0 . 114 . . Atlas-SNP GABRG1 2565 hgsc.bcm.edu hg19 4 46053503 46053503 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GABRG1 NM_173536 exon8 c.T1069A p.F357I TGGTAAAATAATG . 80.0 31.0 79.0 0.0 . 172 . . Atlas-SNP GABRA2 2555 hgsc.bcm.edu hg19 4 46390684 46390684 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GABRA2 NM_000807 exon2 c.C40A p.L14I CAAAAAGCAGGAA . 490.0 38.0 142.0 0.0 . 134 . . Atlas-SNP GABRA4 2557 hgsc.bcm.edu hg19 4 46930408 46930408 + Nonsense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GABRA4 NM_000809 exon9 c.C1499A p.S500X GTAGCTGACAACT . 230.0 18.0 101.0 0.0 . 129 . . Atlas-SNP EXOC1 55763 hgsc.bcm.edu hg19 4 56750089 56750089 + Missense_Mutation SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . EXOC1 NM_018261 exon10 c.A1325C p.K442T GCAAGAAGTTTGG . 430.0 44.0 146.0 0.0 . 103 . . Atlas-SNP CEP135 9662 hgsc.bcm.edu hg19 4 56846403 56846403 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CEP135 NM_025009 exon12 c.A1568T p.Q523L ATATACAGTCCAA . 401.0 24.0 129.0 0.0 . 115 . . Atlas-SNP LPHN3 23284 hgsc.bcm.edu hg19 4 62849309 62849309 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . LPHN3 NM_015236 exon16 c.G3020T p.G1007V GTTATGGAACAGA . 254.0 22.0 80.0 0.0 . 800 . . Atlas-SNP TECRL 253017 hgsc.bcm.edu hg19 4 65240898 65240898 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TECRL NM_001010874 exon2 c.A278G p.H93R GCTTTGTGAAACT . 209.0 68.0 103.0 0.0 . 106 . . Atlas-SNP EPHA5 2044 hgsc.bcm.edu hg19 4 66218783 66218783 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . EPHA5 NM_004439 exon13 c.G2275A p.G759S AAGAGCCATTCTC . 211.0 98.0 95.0 0.0 . 315 . . Atlas-SNP UGT2A1 10941 hgsc.bcm.edu hg19 4 70455333 70455333 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . UGT2A1 NM_001252274 exon7 c.C1839A p.H613Q ATCATGGTGAATT . 311.0 30.0 106.0 0.0 . 131 . . Atlas-SNP C4orf40 401137 hgsc.bcm.edu hg19 4 71024516 71024516 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . C4orf40 NM_214711 exon3 c.C547A p.P183T GAGGCACCTGTTG . 250.0 16.0 93.0 0.0 . 19 . . Atlas-SNP MUC7 4589 hgsc.bcm.edu hg19 4 71346814 71346814 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MUC7 NM_001145007 exon4 c.C353T p.S118L TCCCATCAGCTTC . 211.0 12.0 65.0 0.0 . 91 . . Atlas-SNP STBD1 8987 hgsc.bcm.edu hg19 4 77230589 77230589 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . STBD1 NM_003943 exon2 c.G513T p.E171D TGCAGAGAAGTTG . 137.0 15.0 65.0 0.0 . 22 . . Atlas-SNP STBD1 8987 hgsc.bcm.edu hg19 4 77230700 77230700 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . STBD1 NM_003943 exon2 c.G624T p.R208S GCCTAGGCACTCA . 124.0 11.0 72.0 0.0 . 22 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79455713 79455713 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FRAS1 NM_025074 exon71 c.C11036T p.P3679L TGGATCCCAATAC . 199.0 8.0 59.0 0.0 . 779 . . Atlas-SNP ANXA3 306 hgsc.bcm.edu hg19 4 79503384 79503384 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ANXA3 NM_005139 exon5 c.G252A p.M84I TCTCATGGTGGCC . 219.0 15.0 103.0 0.0 . 35 . . Atlas-SNP FGF5 2250 hgsc.bcm.edu hg19 4 81207740 81207740 + Missense_Mutation SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FGF5 NM_004464 exon3 c.A721C p.S241R CCACCTAGCCCTA . 114.0 10.0 61.0 0.0 . 49 . . Atlas-SNP PTPN13 5783 hgsc.bcm.edu hg19 4 87643424 87643424 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PTPN13 NM_006264 exon10 c.G1445A p.R482Q TAAAACGGCAAGA . 268.0 111.0 116.0 0.0 . 203 . . Atlas-SNP GPRIN3 285513 hgsc.bcm.edu hg19 4 90170546 90170546 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 GPRIN3,NS,carcinoma,0,1 GPRIN3 NM_198281 exon2 c.C716T p.T239I TCTCTAGTTAGAG . 93.0 9.0 50.0 0.0 . 90 . . Atlas-SNP ADH6 130 hgsc.bcm.edu hg19 4 100134799 100134799 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ADH6 NM_000672 exon3 c.G226A p.E76K TACTCTCAACGAT . 143.0 8.0 81.0 0.0 . 74 . . Atlas-SNP DKK2 27123 hgsc.bcm.edu hg19 4 107845310 107845310 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 DKK2,NS,neuroblastoma,0,1 DKK2 NM_014421 exon4 c.G581A p.C194Y GCACAGCAAAACC . 191.0 16.0 69.0 0.0 . 96 . . Atlas-SNP ANK2 287 hgsc.bcm.edu hg19 4 114274329 114274329 + Missense_Mutation SNP G G A rs200920714 bycluster;alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 ANK2,caecum,carcinoma,0,1 ANK2 NM_001148 exon38 c.G4555A p.A1519T ATGACCGCCATCT . 92.0 6.0 49.0 0.0 . 576 . G|0.999;T|0.001 Atlas-SNP PABPC4L 132430 hgsc.bcm.edu hg19 4 135121309 135121309 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PABPC4L NM_001114734 exon2 c.G1040T p.G347V TGGCACCCACGAA . 117.0 12.0 50.0 0.0 . 60 . . Atlas-SNP SMARCA5 8467 hgsc.bcm.edu hg19 4 144467138 144467138 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SMARCA5 NM_003601 exon19 c.A2458G p.I820V CTTAAAATTGATG . 300.0 17.0 89.0 0.0 . 73 . . Atlas-SNP GYPA 2993 hgsc.bcm.edu hg19 4 145039884 145039884 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 GYPA,right_upper_lobe,carcinoma,0,1 GYPA NM_002099 exon4 c.A254T p.H85L AAATGATGGGCAA . 662.0 43.0 170.0 0.0 . 27 . . Atlas-SNP ZNF827 152485 hgsc.bcm.edu hg19 4 146824067 146824067 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZNF827 NM_178835 exon2 c.C344A p.S115Y TTGTTGGAGCCTG . 70.0 5.0 32.0 0.0 . 102 . . Atlas-SNP ZNF827 152485 hgsc.bcm.edu hg19 4 146824068 146824068 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZNF827 NM_178835 exon2 c.T343A p.S115T TGTTGGAGCCTGG . 69.0 5.0 32.0 0.0 . 102 . . Atlas-SNP ARHGAP10 79658 hgsc.bcm.edu hg19 4 148886196 148886196 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ARHGAP10 NM_024605 exon17 c.G1472A p.R491H AATCTCGTGTTAA . 353.0 155.0 117.0 0.0 . 92 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155278437 155278437 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DCHS2 NM_017639 exon6 c.A734G p.N245S GAAAAGTTGACAG . 66.0 4.0 47.0 0.0 . 594 . . Atlas-SNP NPY2R 4887 hgsc.bcm.edu hg19 4 156135578 156135578 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 NPY2R,right_upper_lobe,carcinoma,0,1 NPY2R NM_000910 exon2 c.C487G p.R163G TCCAAGCGAATCA . 70.0 8.0 14.0 0.0 . 87 . . Atlas-SNP GRIA2 2891 hgsc.bcm.edu hg19 4 158262498 158262498 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GRIA2 NM_000826 exon12 c.G1927A p.A643T TTAGCTGCCTTCC . 385.0 36.0 163.0 0.0 . 358 . . Atlas-SNP GRIA2 2891 hgsc.bcm.edu hg19 4 158262499 158262499 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GRIA2 NM_000826 exon12 c.C1928A p.A643D TAGCTGCCTTCCT . 380.0 35.0 162.0 0.0 . 358 . . Atlas-SNP FNIP2 57600 hgsc.bcm.edu hg19 4 159790073 159790073 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FNIP2 NM_020840 exon13 c.A2285T p.Q762L ACCCGCAGGTTTC . 103.0 7.0 32.0 0.0 . 90 . . Atlas-SNP NPY5R 4889 hgsc.bcm.edu hg19 4 164272591 164272591 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NPY5R NM_006174 exon4 c.T1166A p.V389E TCCATGTGGTAAC . 135.0 13.0 77.0 0.0 . 101 . . Atlas-SNP IRX1 79192 hgsc.bcm.edu hg19 5 3599577 3599577 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . IRX1 NM_024337 exon2 c.C515A p.T172K CCCTCACGCAGGT . 200.0 31.0 97.0 0.0 . 106 . . Atlas-SNP CTNND2 1501 hgsc.bcm.edu hg19 5 11082847 11082847 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 CTNND2,NS,carcinoma,0,1 CTNND2 NM_001332 exon16 c.C2749T p.R917W TGTTCCGCAGCGC . 110.0 9.0 43.0 0.0 . 289 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13770967 13770967 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DNAH5 NM_001369 exon56 c.A9496G p.R3166G GGAATCTCTGAAA . 236.0 18.0 71.0 0.0 . 868 . . Atlas-SNP PRLR 5618 hgsc.bcm.edu hg19 5 35089695 35089695 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PRLR NM_000949 exon3 c.G28A p.V10I TGAAAACGGTTGC . 86.0 13.0 64.0 0.0 . 90 . . Atlas-SNP EGFLAM 133584 hgsc.bcm.edu hg19 5 38370498 38370498 + Missense_Mutation SNP G G T rs369204325 alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . EGFLAM NM_001205301 exon6 c.G646T p.V216L TTTGCCGTGAGGG . 154.0 22.0 38.0 0.0 . 302 . . Atlas-SNP SEPP1 6414 hgsc.bcm.edu hg19 5 42804757 42804757 + Splice_Site SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SEPP1 NM_005410 exon5 c.534+1G>T . AAAATACCGTGAG . 295.0 17.0 107.0 0.0 . 33 . . Atlas-SNP PDE4D 5144 hgsc.bcm.edu hg19 5 58882174 58882174 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PDE4D NM_006203 exon1 c.A28G p.R10G GCCTTCTAAAGGG . 210.0 13.0 88.0 0.0 . 345 . . Atlas-SNP SGTB 54557 hgsc.bcm.edu hg19 5 64976616 64976616 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SGTB NM_019072 exon7 c.C485T p.A162V GTGAGGGCCAGCC . 136.0 68.0 55.0 0.0 . 22 . . Atlas-SNP AGGF1 55109 hgsc.bcm.edu hg19 5 76342270 76342270 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . AGGF1 NM_018046 exon6 c.C969T p.G323G AATAGGCATTCAT . 213.0 17.0 84.0 0.0 . 71 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 89910835 89910835 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GPR98 NM_032119 exon2 c.C206A p.S69X TTGTATCGGTAAG . 208.0 16.0 65.0 0.0 . 605 . . Atlas-SNP ELL2 22936 hgsc.bcm.edu hg19 5 95226823 95226823 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ELL2 NM_012081 exon10 c.G1745T p.G582V TTTGAGCCTGGAG . 172.0 15.0 91.0 0.0 . 63 . . Atlas-SNP ELL2 22936 hgsc.bcm.edu hg19 5 95226961 95226961 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 ELL2,caecum,carcinoma,0,1 ELL2 NM_012081 exon10 c.T1607A p.V536D TAGGAGACGATAG . 86.0 11.0 50.0 0.0 . 63 . . Atlas-SNP REEP5 7905 hgsc.bcm.edu hg19 5 112238112 112238112 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . REEP5 NM_005669 exon3 c.T316C p.F106L ACAGGAAGATATC . 196.0 17.0 66.0 0.0 . 12 . . Atlas-SNP FEM1C 56929 hgsc.bcm.edu hg19 5 114861063 114861063 + Missense_Mutation SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FEM1C NM_020177 exon3 c.T796G p.L266V ATTTCAAAGCCCC . 282.0 12.0 99.0 0.0 . 50 . . Atlas-SNP DMXL1 1657 hgsc.bcm.edu hg19 5 118485268 118485268 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DMXL1 NM_005509 exon18 c.C3746T p.P1249L AAGAACCTGTTAT . 108.0 8.0 45.0 0.0 . 268 . . Atlas-SNP PRR16 51334 hgsc.bcm.edu hg19 5 120021691 120021691 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PRR16 NM_016644 exon3 c.G133C p.E45Q CAGCTGGAGGATG . 39.0 19.0 35.0 0.0 . 71 . . Atlas-SNP FAM53C 51307 hgsc.bcm.edu hg19 5 137681062 137681062 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FAM53C NM_001135647 exon4 c.C685T p.R229C CCTCAGCGCCGCT . 71.0 5.0 25.0 0.0 . 35 . . Atlas-SNP PCDHAC2 56134 hgsc.bcm.edu hg19 5 140347607 140347607 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PCDHAC2 NM_031883 exon1 c.A1256G p.Y419C ACTCCTATACACT . 75.0 11.0 22.0 0.0 . 142 . . Atlas-SNP PCDHGC5 56097 hgsc.bcm.edu hg19 5 140871119 140871119 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PCDHGC5 NM_018929 exon1 c.G2312A p.S771N CGCAGAGCCACTG . 84.0 24.0 42.0 0.0 . 199 . . Atlas-SNP FBXO38 81545 hgsc.bcm.edu hg19 5 147819259 147819259 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FBXO38 NM_030793 exon19 c.A2849G p.Y950C ACCCCTATCACAT . 186.0 57.0 83.0 0.0 . 115 . . Atlas-SNP SH3TC2 79628 hgsc.bcm.edu hg19 5 148406879 148406879 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SH3TC2 NM_024577 exon11 c.T2416C p.Y806H AGAGATAGGCCCA . 91.0 4.0 36.0 0.0 . 178 . . Atlas-SNP SH3TC2 79628 hgsc.bcm.edu hg19 5 148411195 148411195 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SH3TC2 NM_024577 exon9 c.G1057T p.G353X CACTTCCCAGGGC . 138.0 15.0 56.0 0.0 . 178 . . Atlas-SNP PDGFRB 5159 hgsc.bcm.edu hg19 5 149497264 149497264 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PDGFRB NM_002609 exon22 c.C3054A p.D1018E GTCGTTGTCACCC . 50.0 19.0 35.0 0.0 . 142 . . Atlas-SNP WWC1 23286 hgsc.bcm.edu hg19 5 167891765 167891765 + Missense_Mutation SNP G G A rs139653620 bycluster TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 WWC1,colon,carcinoma,0,2 WWC1 NM_001161662 exon21 c.G2966A p.R989H CCGAGCGTCTGAT . 130.0 6.0 42.0 0.0 . 98 . G|1.000;A|0.000 Atlas-SNP FOXI1 2299 hgsc.bcm.edu hg19 5 169535204 169535204 + Missense_Mutation SNP C C A rs35678180 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FOXI1 NM_012188 exon2 c.C726A p.S242R GGACAGCCCCAAG . 157.0 8.0 39.0 0.0 . 70 . C|0.995;T|0.005 Atlas-SNP LCP2 3937 hgsc.bcm.edu hg19 5 169685155 169685155 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . LCP2 NM_005565 exon16 c.T986C p.L329S TGGGGCAAAGGTC . 156.0 13.0 54.0 0.0 . 133 . . Atlas-SNP DBN1 1627 hgsc.bcm.edu hg19 5 176895871 176895871 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DBN1 NM_080881 exon3 c.A122T p.D41V AGGTCATCGGAGC . 143.0 11.0 53.0 0.0 . 122 . . Atlas-SNP PDLIM7 9260 hgsc.bcm.edu hg19 5 176916422 176916422 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PDLIM7 NM_005451 exon9 c.G841A p.V281M GACACACGGGAGT . 66.0 26.0 56.0 0.0 . 32 . . Atlas-SNP BTNL3 10917 hgsc.bcm.edu hg19 5 180432823 180432823 + Missense_Mutation SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . BTNL3 NM_197975 exon8 c.A1352C p.D451A TGTATGACGAGGA . 245.0 14.0 67.0 0.0 . 55 . . Atlas-SNP JARID2 3720 hgsc.bcm.edu hg19 6 15507624 15507624 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . JARID2 NM_004973 exon11 c.T2708A p.L903Q CCATCCTGCGTCA . 119.0 7.0 46.0 0.0 . 135 . . Atlas-SNP PRL 5617 hgsc.bcm.edu hg19 6 22294684 22294684 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PRL NM_000948 exon2 c.T158A p.L53Q TGGGACAGGACGA . 360.0 16.0 79.0 0.0 . 41 . . Atlas-SNP HIST1H1E 3008 hgsc.bcm.edu hg19 6 26156943 26156943 + Nonsense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HIST1H1E NM_005321 exon1 c.A325T p.K109X CTCAACAAGAAGG . 217.0 19.0 55.0 0.0 . 69 . . Atlas-SNP HIST1H1E 3008 hgsc.bcm.edu hg19 6 26156946 26156946 + Nonsense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HIST1H1E NM_005321 exon1 c.A328T p.K110X AACAAGAAGGCGG . 219.0 18.0 55.0 0.0 . 69 . . Atlas-SNP PGBD1 84547 hgsc.bcm.edu hg19 6 28268674 28268674 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 PGBD1,NS,carcinoma,0,1 PGBD1 NM_001184743 exon7 c.C1043T p.A348V ACAAAGCTCGAGT . 157.0 12.0 62.0 0.0 . 106 . . Atlas-SNP PGBD1 84547 hgsc.bcm.edu hg19 6 28268801 28268801 + Missense_Mutation SNP G G C rs143874020 TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PGBD1 NM_001184743 exon7 c.G1170C p.W390C GAGTTGGACCAAA . 129.0 10.0 34.0 0.0 . 106 . G|1.000;C|0.000 Atlas-SNP PGBD1 84547 hgsc.bcm.edu hg19 6 28269056 28269056 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PGBD1 NM_001184743 exon7 c.G1425T p.R475S TAGAAGGGAAATG . 338.0 17.0 107.0 0.0 . 106 . . Atlas-SNP OR11A1 26531 hgsc.bcm.edu hg19 6 29395051 29395051 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OR11A1 NM_013937 exon1 c.G368A p.R123H AGGTAGCGGTCAT . 231.0 13.0 58.0 0.0 . 30 . . Atlas-SNP PPT2 9374 hgsc.bcm.edu hg19 6 32123651 32123651 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PPT2 NM_138717 exon5 c.C455T p.T152M CAGACACGGACTA . 433.0 19.0 109.0 0.0 . 19 . . Atlas-SNP ZBTB9 221504 hgsc.bcm.edu hg19 6 33423961 33423961 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZBTB9 NM_152735 exon2 c.G1084A p.G362R CCTGGGGGAGCAG . 81.0 25.0 26.0 0.0 . 23 . . Atlas-SNP C6orf106 64771 hgsc.bcm.edu hg19 6 34574641 34574641 + Silent SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . C6orf106 NM_024294 exon4 c.T552G p.L184L TCCTAAAAGTCCA . 50.0 15.0 26.0 0.0 . 29 . . Atlas-SNP UHRF1BP1 54887 hgsc.bcm.edu hg19 6 34802105 34802105 + Silent SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . UHRF1BP1 NM_017754 exon5 c.C450A p.L150L GCAGCTCCAGGGC . 278.0 163.0 82.0 0.0 . 102 . . Atlas-SNP RPL10A 4736 hgsc.bcm.edu hg19 6 35436589 35436589 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RPL10A NM_007104 exon2 c.C19G p.R7G GTCTCTCGCGACA . 52.0 19.0 24.0 0.0 . 13 . . Atlas-SNP KCTD20 222658 hgsc.bcm.edu hg19 6 36447368 36447368 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KCTD20 NM_173562 exon5 c.G538T p.D180Y TTACAGGATTATT . 84.0 6.0 37.0 0.0 . 37 . . Atlas-SNP CDKN1A 1026 hgsc.bcm.edu hg19 6 36651880 36651880 + Missense_Mutation SNP T T G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CDKN1A NM_001220778 exon2 c.T2G p.M1R GCGCCATGTCAGA . 140.0 29.0 30.0 0.0 . 27 . . Atlas-SNP CDKN1A 1026 hgsc.bcm.edu hg19 6 36651881 36651881 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CDKN1A NM_001220778 exon2 c.G3T p.M1I CGCCATGTCAGAA . 139.0 28.0 30.0 0.0 . 27 . . Atlas-SNP PGC 5225 hgsc.bcm.edu hg19 6 41707607 41707607 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PGC NM_002630 exon7 c.T845C p.L282P ACAGTGAGCAGAG . 180.0 8.0 50.0 0.0 . 56 . . Atlas-SNP USP49 25862 hgsc.bcm.edu hg19 6 41773689 41773689 + Missense_Mutation SNP T T G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . USP49 NM_018561 exon4 c.A1033C p.I345L TCTGGATGAGCTC . 101.0 16.0 14.0 0.0 . 58 . . Atlas-SNP PPP2R5D 5528 hgsc.bcm.edu hg19 6 42978962 42978962 + Missense_Mutation SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PPP2R5D NM_006245 exon16 c.A1747C p.K583Q ACCATCAAGGCAC . 246.0 29.0 62.0 0.0 . 47 . . Atlas-SNP CRIP3 401262 hgsc.bcm.edu hg19 6 43274043 43274043 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CRIP3 NM_206922 exon6 c.G409A p.V137M ACATCACCTTCTC . 173.0 24.0 41.0 0.0 . 30 . . Atlas-SNP CRIP3 401262 hgsc.bcm.edu hg19 6 43274045 43274045 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CRIP3 NM_206922 exon6 c.A407T p.K136M ATCACCTTCTCAG . 175.0 26.0 41.0 0.0 . 30 . . Atlas-SNP CRIP3 401262 hgsc.bcm.edu hg19 6 43274046 43274046 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CRIP3 NM_206922 exon6 c.A406G p.K136E TCACCTTCTCAGC . 170.0 22.0 40.0 0.0 . 30 . . Atlas-SNP CLIC5 53405 hgsc.bcm.edu hg19 6 45922898 45922898 + Silent SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CLIC5 NM_001114086 exon2 c.C624T p.F208F GACATTGAACACG . 198.0 20.0 42.0 0.0 . 48 . . Atlas-SNP PLA2G7 7941 hgsc.bcm.edu hg19 6 46672428 46672428 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PLA2G7 NM_005084 exon12 c.C1195G p.H399D CTTTATGAAGTCC . 306.0 26.0 92.0 0.0 . 49 . . Atlas-SNP GPR110 266977 hgsc.bcm.edu hg19 6 46976681 46976681 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GPR110 NM_153840 exon11 c.G2490C p.Q830H TCTCACCTGGAAT . 226.0 19.0 67.0 0.0 . 102 . . Atlas-SNP PGK2 5232 hgsc.bcm.edu hg19 6 49753721 49753721 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PGK2 NM_138733 exon1 c.A1180T p.T394S CTCCAGTGCTGAC . 187.0 8.0 50.0 0.0 . 87 . . Atlas-SNP IL17F 112744 hgsc.bcm.edu hg19 6 52101936 52101936 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . IL17F NM_052872 exon3 c.G285A p.S95S AACTTCCGAGGGG . 96.0 8.0 30.0 0.0 . 28 . . Atlas-SNP COL9A1 1297 hgsc.bcm.edu hg19 6 70993489 70993489 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . COL9A1 NM_001851 exon6 c.C731A p.P244H CGCAGGGGGTCAC . 170.0 26.0 61.0 0.0 . 228 . . Atlas-SNP COL12A1 1303 hgsc.bcm.edu hg19 6 75884785 75884785 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . COL12A1 NM_004370 exon13 c.C2679A p.D893E GAGGGCGTCTCCA . 108.0 5.0 66.0 0.0 . 385 . . Atlas-SNP FILIP1 27145 hgsc.bcm.edu hg19 6 76024218 76024218 + Nonsense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FILIP1 NM_015687 exon5 c.A1330T p.K444X TACTCTTGCTAAA . 236.0 36.0 148.0 0.0 . 173 . . Atlas-SNP ME1 4199 hgsc.bcm.edu hg19 6 84117526 84117526 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ME1 NM_002395 exon2 c.T173A p.V58E TTTACTACTCTAA . 85.0 12.0 61.0 0.0 . 68 . . Atlas-SNP GPR63 81491 hgsc.bcm.edu hg19 6 97246970 97246970 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GPR63 NM_030784 exon2 c.T638C p.L213S ACGGCTAAAGGAA . 86.0 25.0 62.0 0.0 . 60 . . Atlas-SNP FBXL4 26235 hgsc.bcm.edu hg19 6 99322272 99322272 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FBXL4 NM_012160 exon9 c.C1748A p.S583Y TTACAAGATTCCA . 164.0 13.0 91.0 0.0 . 54 . . Atlas-SNP REV3L 5980 hgsc.bcm.edu hg19 6 111678241 111678241 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . REV3L NM_002912 exon18 c.A7160T p.H2387L ATTTCATGAAAAA . 165.0 27.0 93.0 0.0 . 386 . . Atlas-SNP HDAC2 3066 hgsc.bcm.edu hg19 6 114264582 114264582 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HDAC2 NM_001527 exon12 c.T1311A p.D437E CTTATGATCAGCC . 72.0 11.0 71.0 0.0 . 102 . . Atlas-SNP TPD52L1 7164 hgsc.bcm.edu hg19 6 125584076 125584076 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TPD52L1 NM_003287 exon7 c.C583T p.R195W GGCTCCCGGCGGA . 51.0 15.0 22.0 0.0 . 14 . . Atlas-SNP PLEKHG1 57480 hgsc.bcm.edu hg19 6 151161944 151161944 + Missense_Mutation SNP T T G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PLEKHG1 NM_001029884 exon17 c.T4070G p.L1357R ACTATCTTTGGAG . 77.0 8.0 67.0 0.0 . 97 . . Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152583243 152583243 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SYNE1 NM_182961 exon101 c.G18896T p.W6299L CTTTCCCATTTCA . 147.0 18.0 123.0 0.0 . 3227 . . Atlas-SNP PDE10A 10846 hgsc.bcm.edu hg19 6 165846593 165846593 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PDE10A NM_001130690 exon7 c.G562C p.G188R CCAGTCCAGTACC . 160.0 10.0 88.0 0.0 . 154 . . Atlas-SNP PHF10 55274 hgsc.bcm.edu hg19 6 170105298 170105298 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PHF10 NM_018288 exon11 c.A1342G p.M448V ACATCATTTCTTC . 97.0 18.0 72.0 0.0 . 76 . . Atlas-SNP FSCN1 6624 hgsc.bcm.edu hg19 7 5643546 5643546 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FSCN1 NM_003088 exon4 c.C1164T p.F388F CGTGTTCCGCGGG . 89.0 59.0 26.0 0.0 . 29 . . Atlas-SNP GRID2IP 392862 hgsc.bcm.edu hg19 7 6590947 6590947 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GRID2IP NM_001145118 exon1 c.G121C p.G41R GTCCTCCGGCATG . 26.0 12.0 6.0 0.0 . 82 . . Atlas-SNP MPP6 51678 hgsc.bcm.edu hg19 7 24705683 24705683 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MPP6 NM_016447 exon9 c.G927C p.M309I AAAGATGATGTAT . 176.0 8.0 69.0 0.0 . 62 . . Atlas-SNP HECW1 23072 hgsc.bcm.edu hg19 7 43484350 43484350 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HECW1 NM_015052 exon11 c.T1579A p.S527T CGGGCCTCGGTGA . 155.0 24.0 42.0 0.0 . 540 . . Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47876625 47876625 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PKD1L1 NM_138295 exon37 c.C5837T p.P1946L GAGGAGGGCCTGC . 149.0 71.0 34.0 0.0 . 328 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48443391 48443391 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ABCA13 NM_152701 exon39 c.G11985T p.R3995S GTCGAGGACCGTG . 115.0 11.0 61.0 0.0 . 1192 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48559659 48559659 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ABCA13 NM_152701 exon53 c.T13820C p.V4607A ATGATGTCCTCAA . 177.0 97.0 56.0 0.0 . 1192 . . Atlas-SNP GUSB 2990 hgsc.bcm.edu hg19 7 65440043 65440043 + Nonsense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GUSB NM_000181 exon6 c.C928T p.Q310X ACGTCTGTGCAGT . 110.0 65.0 25.0 0.0 . 52 . . Atlas-SNP TPST1 8460 hgsc.bcm.edu hg19 7 65751568 65751568 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TPST1 NM_003596 exon3 c.A916G p.I306V GGGAAGATACCGC . 92.0 8.0 56.0 0.0 . 25 . . Atlas-SNP UPK3B 80761 hgsc.bcm.edu hg19 7 76142448 76142448 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . UPK3B NM_182684 exon4 c.C509A p.T170N CTGAGACCAAGTG . 201.0 42.0 88.0 0.0 . 15 . . Atlas-SNP PHTF2 57157 hgsc.bcm.edu hg19 7 77569480 77569480 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PHTF2 NM_001127357 exon12 c.C1499A p.S500X CTGCTTCAGAACT . 367.0 38.0 133.0 0.0 . 104 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82585390 82585390 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PCLO NM_014510 exon5 c.C4879T p.H1627Y ATGAGTGACGTCT . 197.0 52.0 92.0 0.0 . 1506 . . Atlas-SNP SEMA3A 10371 hgsc.bcm.edu hg19 7 83590805 83590805 + Missense_Mutation SNP C C A rs318240753 bycluster;alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SEMA3A NM_006080 exon17 c.G2198T p.R733L TGCCGACGTTGTT . 385.0 21.0 148.0 0.0 . 121 . . Atlas-SNP PEG10 23089 hgsc.bcm.edu hg19 7 94293700 94293700 + Missense_Mutation SNP C C T rs376581536 TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PEG10 NM_001172438 exon2 c.C1060T p.R354C GGTGCCCGCATGC . 112.0 7.0 20.0 0.0 . 36 . . Atlas-SNP MCM7 4176 hgsc.bcm.edu hg19 7 99693701 99693701 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MCM7 NM_005916 exon11 c.G1291T p.G431C CCCCACCCTCTAA . 160.0 11.0 25.0 0.0 . 136 . . Atlas-SNP MCM7 4176 hgsc.bcm.edu hg19 7 99697309 99697309 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MCM7 NM_005916 exon3 c.C179G p.P60R AACTCGGGGTCAT . 93.0 13.0 17.0 0.0 . 136 . . Atlas-SNP PVRIG 79037 hgsc.bcm.edu hg19 7 99818613 99818613 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PVRIG NM_024070 exon6 c.C720A p.C240X CAGCTGCCGCCCA . 173.0 14.0 66.0 0.0 . 20 . . Atlas-SNP GNB2 2783 hgsc.bcm.edu hg19 7 100274386 100274386 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GNB2 NM_005273 exon4 c.C167A p.A56E ACCTGGCAAAGAT . 78.0 23.0 28.0 0.0 . 29 . . Atlas-SNP SLC12A9 56996 hgsc.bcm.edu hg19 7 100452001 100452001 + Splice_Site SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SLC12A9 NM_020246 exon2 c.181+1G>T . GGATTGGTGAGTG . 395.0 18.0 145.0 0.0 . 81 . . Atlas-SNP RELN 5649 hgsc.bcm.edu hg19 7 103276844 103276844 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RELN NM_173054 exon18 c.G2141A p.S714N CCAAAGCTTTCAG . 220.0 10.0 73.0 0.0 . 593 . . Atlas-SNP PNPLA8 50640 hgsc.bcm.edu hg19 7 108155899 108155899 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PNPLA8 NM_001256008 exon2 c.C37T p.L13F TAAGGAGGTAAAT . 119.0 8.0 48.0 0.0 . 82 . . Atlas-SNP KCND2 3751 hgsc.bcm.edu hg19 7 119914945 119914945 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KCND2 NM_012281 exon1 c.C259A p.R87S TTTGACCGTGACC . 138.0 11.0 48.0 0.0 . 194 . . Atlas-SNP KCND2 3751 hgsc.bcm.edu hg19 7 119915059 119915059 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 KCND2,NS,carcinoma,0,1 KCND2 NM_012281 exon1 c.A373G p.I125V GGCCTCATCCCGG . 128.0 17.0 34.0 0.0 . 194 . . Atlas-SNP PTPRZ1 5803 hgsc.bcm.edu hg19 7 121684477 121684477 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PTPRZ1 NM_002851 exon23 c.A5939G p.E1980G GCCAGGAGCAATA . 373.0 183.0 135.0 0.0 . 605 . . Atlas-SNP CCDC136 64753 hgsc.bcm.edu hg19 7 128449544 128449544 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CCDC136 NM_022742 exon11 c.A1646T p.K549M AGGAAAAGTACAA . 528.0 25.0 110.0 0.0 . 170 . . Atlas-SNP AGBL3 340351 hgsc.bcm.edu hg19 7 134717660 134717660 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . AGBL3 NM_178563 exon6 c.G484A p.V162M CAGCCTGTGGATT . 198.0 17.0 69.0 0.0 . 45 . . Atlas-SNP CNOT4 4850 hgsc.bcm.edu hg19 7 135047915 135047915 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CNOT4 NM_001190850 exon12 c.A1864G p.S622G CTAAACTGTTTCC . 90.0 60.0 40.0 0.0 . 146 . . Atlas-SNP CLCN1 1180 hgsc.bcm.edu hg19 7 143039472 143039472 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CLCN1 NM_000083 exon16 c.A1804G p.T602A AAATATACCATCT . 210.0 10.0 74.0 0.0 . 141 . . Atlas-SNP CHPF2 54480 hgsc.bcm.edu hg19 7 150934562 150934562 + Missense_Mutation SNP G G A rs139379425 bycluster;byfrequency;alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CHPF2 NM_019015 exon4 c.G1114A p.V372M TTTGAGGTGCTGG . 159.0 9.0 44.0 0.0 . 52 . G|1.000;T|0.000 Atlas-SNP DLGAP2 9228 hgsc.bcm.edu hg19 8 1616828 1616828 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 DLGAP2_ENST00000356067,NS,carcinoma,0,2 DLGAP2 NM_004745 exon6 c.C1904T p.S635F GCTGCTCCTCCAT . 49.0 2.0 23.0 0.0 . 292 . . Atlas-SNP RP1L1 94137 hgsc.bcm.edu hg19 8 10470139 10470139 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 RP1L1,bladder,carcinoma,-1,1 RP1L1 NM_178857 exon4 c.G1469T p.G490V TCAGCCCCTATCT . 30.0 5.0 30.0 0.0 . 453 . . Atlas-SNP FGF20 26281 hgsc.bcm.edu hg19 8 16853235 16853235 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FGF20 NM_019851 exon2 c.C319A p.L107M TGACCAGTCCCAC . 97.0 21.0 69.0 0.0 . 16 . . Atlas-SNP MTMR7 9108 hgsc.bcm.edu hg19 8 17198903 17198903 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MTMR7 NM_004686 exon6 c.A701G p.D234G ACGAAGTCACTTC . 73.0 8.0 46.0 0.0 . 75 . . Atlas-SNP PPP2CB 5516 hgsc.bcm.edu hg19 8 30643819 30643819 + Nonsense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PPP2CB NM_001009552 exon7 c.C862T p.Q288X CAAATTGAAGGCT . 34.0 5.0 25.0 0.0 . 27 . . Atlas-SNP ZMAT4 79698 hgsc.bcm.edu hg19 8 40683185 40683185 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZMAT4 NM_024645 exon2 c.C11T p.S4F ATATCGGAGGACT . 78.0 8.0 28.0 0.0 . 47 . . Atlas-SNP HGSNAT 138050 hgsc.bcm.edu hg19 8 43033222 43033222 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HGSNAT NM_152419 exon10 c.T857A p.V286E GGTTTGTATTTAT . 225.0 17.0 101.0 0.0 . 85 . . Atlas-SNP OPRK1 4986 hgsc.bcm.edu hg19 8 54147486 54147486 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OPRK1 NM_000912 exon3 c.C443G p.T148S GTCAAGGTGAAGA . 189.0 12.0 62.0 0.0 . 90 . . Atlas-SNP TRIM55 84675 hgsc.bcm.edu hg19 8 67067941 67067941 + Missense_Mutation SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TRIM55 NM_033058 exon10 c.A1608C p.L536F TACTTTAATGGGT . 288.0 26.0 136.0 0.0 . 91 . . Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 68934295 68934295 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PREX2 NM_025170 exon4 c.G361C p.E121Q TATGATGAATATT . 93.0 7.0 40.0 0.0 . 614 . . Atlas-SNP KCNB2 9312 hgsc.bcm.edu hg19 8 73848335 73848335 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KCNB2 NM_004770 exon3 c.C745G p.L249V GAGTACCTTTTGC . 405.0 34.0 134.0 0.0 . 228 . . Atlas-SNP LRRCC1 85444 hgsc.bcm.edu hg19 8 86057622 86057622 + Splice_Site SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 LRRCC1_ENST00000414626,NS,carcinoma,0,2 LRRCC1 NM_033402 exon19 c.2977-2A>T . CGATTTAGGTCCA . 300.0 141.0 109.0 0.0 . 212 . . Atlas-SNP STK3 6788 hgsc.bcm.edu hg19 8 99560362 99560362 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . STK3 NM_001256312 exon11 c.A1060T p.M354L TCACCATGGTGTG . 212.0 9.0 61.0 0.0 . 47 . . Atlas-SNP DCSTAMP 81501 hgsc.bcm.edu hg19 8 105360964 105360964 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_001257317 exon2 c.G184A p.A62T GCGGCCGCTGCCT . 298.0 88.0 106.0 0.0 . . . . Atlas-SNP DCSTAMP 81501 hgsc.bcm.edu hg19 8 105361088 105361088 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_001257317 exon2 c.C308A p.T103K CTGGCACAGGGAT . 344.0 20.0 103.0 0.0 . . . . Atlas-SNP ABRA 137735 hgsc.bcm.edu hg19 8 107782232 107782232 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 ABRA,NS,carcinoma,0,1 ABRA NM_139166 exon1 c.C187G p.P63A GTTTAGGAGCTTG . 451.0 292.0 127.0 0.0 . 57 . . Atlas-SNP OC90 729330 hgsc.bcm.edu hg19 8 133053841 133053841 + Missense_Mutation SNP C C A rs372434452 alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OC90 NM_001080399 exon5 c.G275T p.R92L AAGTCTCGGGGGC . 447.0 18.0 69.0 0.0 . 163 . . Atlas-SNP KCNQ3 3786 hgsc.bcm.edu hg19 8 133153576 133153576 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KCNQ3 NM_004519 exon10 c.A1265T p.Q422L AGCTTTTGGCTAC . 133.0 20.0 38.0 0.0 . 164 . . Atlas-SNP TSTA3 7264 hgsc.bcm.edu hg19 8 144698895 144698895 + Splice_Site SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TSTA3 . . . . TGCACCTGTAATG . 176.0 20.0 41.0 0.0 . 23 . . Atlas-SNP KANK1 23189 hgsc.bcm.edu hg19 9 738429 738429 + Missense_Mutation SNP G G A rs374492770 bycluster TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KANK1 NM_001256876 exon12 c.G3478A p.G1160S GCAGACGGCAACG . 175.0 16.0 92.0 0.0 . 231 . . Atlas-SNP KCNV2 169522 hgsc.bcm.edu hg19 9 2718262 2718262 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 KCNV2,NS,carcinoma,0,1 KCNV2 NM_133497 exon1 c.G523A p.G175R CTCGACGGGCTGT . 55.0 22.0 22.0 0.0 . 72 . . Atlas-SNP RFX3 5991 hgsc.bcm.edu hg19 9 3346710 3346710 + Nonsense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RFX3 NM_134428 exon4 c.C172T p.Q58X CATACTGCACCTG . 137.0 6.0 69.0 0.0 . 156 . . Atlas-SNP PLIN2 123 hgsc.bcm.edu hg19 9 19121143 19121143 + Silent SNP G G A rs368424624 TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PLIN2 NM_001122 exon5 c.C330T p.G110G CACAGCGCCTTTG . 76.0 15.0 46.0 0.0 . 41 . . Atlas-SNP IFNA8 3445 hgsc.bcm.edu hg19 9 21409564 21409564 + Missense_Mutation SNP T T C rs28383787 alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . IFNA8 NM_002170 exon1 c.T389C p.I130T GGGTGATAGAGTC . 236.0 11.0 110.0 0.0 . 19 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79322715 79322715 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PRUNE2 NM_015225 exon8 c.G4475T p.G1492V ACGTCCCCAAAAT . 70.0 31.0 42.0 0.0 . 331 . . Atlas-SNP VPS13A 23230 hgsc.bcm.edu hg19 9 79824389 79824389 + Nonsense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . VPS13A NM_001018038 exon6 c.C436T p.Q146X GTTACACAGATCA . 282.0 23.0 99.0 0.0 . 735 . . Atlas-SNP VPS13A 23230 hgsc.bcm.edu hg19 9 79867172 79867172 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 VPS13A_ENST00000376634,caecum,carcinoma,0,3 VPS13A NM_001018038 exon22 c.G2192A p.R731Q AAGCACGAAAACT . 121.0 7.0 77.0 0.0 . 735 . . Atlas-SNP SPATA31C2 645961 hgsc.bcm.edu hg19 9 90745601 90745601 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_001166137 exon4 c.G2351T p.S784I CTCCTGCTCTGCT . 163.0 54.0 57.0 0.0 . . . . Atlas-SNP COL15A1 1306 hgsc.bcm.edu hg19 9 101749575 101749575 + Splice_Site SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . COL15A1 NM_001855 exon4 c.649-1G>A . TCCCCAGGGCTCC . 91.0 16.0 38.0 0.0 . 211 . . Atlas-SNP GRIN3A 116443 hgsc.bcm.edu hg19 9 104449365 104449365 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GRIN3A NM_133445 exon2 c.G817T p.D273Y TCCAGTCTTCCTG . 193.0 13.0 89.0 0.0 . 186 . . Atlas-SNP SMC2 10592 hgsc.bcm.edu hg19 9 106894408 106894408 + Splice_Site SNP T T G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SMC2 NM_001042551 exon22 c.3108+2T>G . AAAAGGTACTTTT . 435.0 47.0 144.0 0.0 . 127 . . Atlas-SNP KIAA0368 23392 hgsc.bcm.edu hg19 9 114202776 114202776 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KIAA0368 NM_001080398 exon7 c.C949A p.L317I GAAAAAGGGTTGG . 86.0 29.0 39.0 0.0 . 144 . . Atlas-SNP ALAD 210 hgsc.bcm.edu hg19 9 116151330 116151330 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ALAD NM_000031 exon11 c.G858C p.W286C TCCATGCCACAGC . 121.0 11.0 47.0 0.0 . 36 . . Atlas-SNP ZBTB6 10773 hgsc.bcm.edu hg19 9 125674263 125674263 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZBTB6 NM_006626 exon2 c.A89G p.N30S AATAAATTCTGCT . 241.0 33.0 96.0 0.0 . 32 . . Atlas-SNP OLFML2A 169611 hgsc.bcm.edu hg19 9 127561615 127561615 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OLFML2A NM_182487 exon4 c.C514A p.R172S AGCGTGCGCCACC . 132.0 57.0 54.0 0.0 . 61 . . Atlas-SNP CDK9 1025 hgsc.bcm.edu hg19 9 130550943 130550943 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CDK9 NM_001261 exon6 c.G725T p.S242I TCATCAGTCAGCT . 404.0 96.0 95.0 0.0 . 22 . . Atlas-SNP ODF2 4957 hgsc.bcm.edu hg19 9 131256871 131256871 + Missense_Mutation SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 ODF2_ENST00000372814,NS,carcinoma,0,2 ODF2 NM_153435 exon17 c.A2027C p.E676A TGGCTGAGTGCCA . 153.0 26.0 58.0 0.0 . 227 . . Atlas-SNP PPP2R4 5524 hgsc.bcm.edu hg19 9 131909700 131909700 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PPP2R4 NM_178001 exon11 c.A1034G p.K345R ACTTCAAGTTCGG . 76.0 24.0 26.0 0.0 . 32 . . Atlas-SNP PPP2R4 5524 hgsc.bcm.edu hg19 9 131909703 131909703 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PPP2R4 NM_178001 exon11 c.T1037C p.F346S TCAAGTTCGGGAG . 74.0 25.0 25.0 0.0 . 32 . . Atlas-SNP C9orf96 169436 hgsc.bcm.edu hg19 9 136269044 136269044 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . C9orf96 NM_153710 exon16 c.G1604T p.G535V CTGCAGGCTGCAT . 93.0 12.0 22.0 0.0 . 77 . . Atlas-SNP RXRA 6256 hgsc.bcm.edu hg19 9 137328351 137328351 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 RXRA,bladder,carcinoma,0,5 RXRA NM_002957 exon10 c.C1280T p.S427F TGCGCTCCATCGG . 134.0 9.0 46.0 0.0 . 52 . . Atlas-SNP CACNA1B 774 hgsc.bcm.edu hg19 9 140880982 140880982 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CACNA1B NM_001243812 exon14 c.G1887T p.Q629H GATGCAGCTGTTT . 187.0 22.0 99.0 0.0 . 266 . . Atlas-SNP DIP2C 22982 hgsc.bcm.edu hg19 10 390969 390969 + Missense_Mutation SNP C C A rs200340134 by1000genomes;alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DIP2C NM_014974 exon27 c.G3313T p.V1105F TCCTGACGTCCAC . 68.0 4.0 22.0 0.0 . 195 . C|1.000;T|0.000 Atlas-SNP PITRM1 10531 hgsc.bcm.edu hg19 10 3201169 3201169 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PITRM1 NM_014889 exon10 c.A1073G p.N358S GGAGAATTGGGCC . 230.0 73.0 107.0 0.0 . 109 . . Atlas-SNP MCM10 55388 hgsc.bcm.edu hg19 10 13239672 13239672 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MCM10 NM_182751 exon15 c.C2027T p.T676I CAAAAACAAACCC . 151.0 16.0 81.0 0.0 . 76 . . Atlas-SNP MASTL 84930 hgsc.bcm.edu hg19 10 27459955 27459955 + Silent SNP T T G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MASTL NM_032844 exon8 c.T2067G p.G689G CAGTGGTTCATAT . 332.0 20.0 115.0 0.0 . 81 . . Atlas-SNP ASAH2 56624 hgsc.bcm.edu hg19 10 52008360 52008360 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ASAH2 NM_019893 exon1 c.G11A p.R4H AAGGTGCGTTTGG . 162.0 7.0 63.0 0.0 . 69 . . Atlas-SNP ANK3 288 hgsc.bcm.edu hg19 10 61835056 61835056 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ANK3 NM_020987 exon37 c.G5583A p.T1861T TGTCTCCGTAGTC . 175.0 57.0 90.0 0.0 . 703 . . Atlas-SNP EGR2 1959 hgsc.bcm.edu hg19 10 64573581 64573581 + Silent SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . EGR2 NM_000399 exon2 c.C817T p.L273L CCCCCAGGGTAAA . 50.0 22.0 31.0 0.0 . 77 . . Atlas-SNP WAPAL 23063 hgsc.bcm.edu hg19 10 88206050 88206050 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . WAPAL NM_015045 exon16 c.G3271A p.E1091K TCTCTTCTGTACC . 253.0 43.0 107.0 0.0 . 81 . . Atlas-SNP HTR7 3363 hgsc.bcm.edu hg19 10 92508782 92508782 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HTR7 NM_019860 exon2 c.T1109A p.L370Q AGCCACAGAAATG . 119.0 22.0 52.0 0.0 . 122 . . Atlas-SNP HTR7 3363 hgsc.bcm.edu hg19 10 92508894 92508894 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HTR7 NM_019860 exon2 c.G997A p.V333I CCCCGACGATGAT . 162.0 11.0 83.0 0.0 . 122 . . Atlas-SNP IDE 3416 hgsc.bcm.edu hg19 10 94225544 94225544 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . IDE NM_004969 exon20 c.A2377G p.I793V AGTATATCTCGAT . 345.0 19.0 116.0 0.0 . 77 . . Atlas-SNP C10orf12 26148 hgsc.bcm.edu hg19 10 98742351 98742351 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . C10orf12 NM_015652 exon1 c.A1204G p.M402V TCCCCAATGGGCT . 42.0 15.0 26.0 0.0 . 94 . . Atlas-SNP AVPI1 60370 hgsc.bcm.edu hg19 10 99437748 99437748 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . AVPI1 NM_021732 exon3 c.C322G p.Q108E CACTCTGTGGGTT . 97.0 42.0 50.0 0.0 . 16 . . Atlas-SNP CPN1 1369 hgsc.bcm.edu hg19 10 101802222 101802222 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CPN1 NM_001308 exon9 c.G1339A p.E447K CCATTTCTTTCTT . 171.0 26.0 80.0 0.0 . 62 . . Atlas-SNP CNNM2 54805 hgsc.bcm.edu hg19 10 104679587 104679587 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CNNM2 NM_199076 exon1 c.G1350A p.M450I CGTGATGACCCCA . 66.0 31.0 24.0 0.0 . 119 . . Atlas-SNP SORCS3 22986 hgsc.bcm.edu hg19 10 106959776 106959776 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SORCS3 NM_014978 exon15 c.C2029T p.L677F TTCAGCCTCCGCT . 147.0 7.0 65.0 0.0 . 282 . . Atlas-SNP DCLRE1A 9937 hgsc.bcm.edu hg19 10 115609989 115609989 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DCLRE1A NM_014881 exon2 c.A875G p.D292G CTGAAGTCATTTT . 143.0 7.0 60.0 0.0 . 80 . . Atlas-SNP KCNK18 338567 hgsc.bcm.edu hg19 10 118960672 118960672 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KCNK18 NM_181840 exon2 c.G226A p.V76M CCAGTGGTGGAAG . 42.0 4.0 28.0 0.0 . 70 . . Atlas-SNP CHST15 51363 hgsc.bcm.edu hg19 10 125769678 125769678 + Nonsense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CHST15 NM_015892 exon8 c.G1673A p.W558X GTCTTCCACGCAA . 84.0 14.0 33.0 0.0 . 134 . . Atlas-SNP DOCK1 1793 hgsc.bcm.edu hg19 10 128840966 128840966 + Silent SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DOCK1 NM_001380 exon20 c.C2025A p.V675V GTTAGTCTTTGAT . 139.0 18.0 83.0 0.0 . 188 . . Atlas-SNP NLRP6 171389 hgsc.bcm.edu hg19 11 281055 281055 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NLRP6 NM_138329 exon4 c.G1321C p.D441H CAGGGCGACCTGC . 61.0 7.0 27.0 0.0 . 4 . . Atlas-SNP DCHS1 8642 hgsc.bcm.edu hg19 11 6643329 6643329 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DCHS1 NM_003737 exon21 c.G9578T p.C3193F GGGGGACATGGCC . 95.0 19.0 38.0 0.0 . 277 . . Atlas-SNP OR10A3 26496 hgsc.bcm.edu hg19 11 7960259 7960259 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OR10A3 NM_001003745 exon1 c.C809G p.T270S TTCTTGGTTTCGG . 370.0 33.0 117.0 0.0 . 54 . . Atlas-SNP TRIM66 9866 hgsc.bcm.edu hg19 11 8662311 8662311 + Silent SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TRIM66 NM_014818 exon9 c.C1176A p.P392P CTCCACGGGGGGC . 86.0 7.0 28.0 0.0 . 45 . . Atlas-SNP TRIM66 9866 hgsc.bcm.edu hg19 11 8662439 8662439 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TRIM66 NM_014818 exon9 c.C1048A p.P350T CAGGGGGCTGCCT . 110.0 15.0 32.0 0.0 . 45 . . Atlas-SNP DENND5A 23258 hgsc.bcm.edu hg19 11 9202573 9202573 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DENND5A NM_015213 exon6 c.C1196A p.P399Q AACTGTGGCAAGT . 211.0 17.0 74.0 0.0 . 84 . . Atlas-SNP DCDC5 100506627 hgsc.bcm.edu hg19 11 30937205 30937205 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DCDC5 NM_020869 exon8 c.A827G p.Y276C TCTCTGTATTCGA . 226.0 19.0 106.0 0.0 . 137 . . Atlas-SNP PRDM11 56981 hgsc.bcm.edu hg19 11 45246096 45246096 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PRDM11 NM_001256695 exon7 c.C1071T p.G357G TATAGGCCAGACC . 58.0 6.0 25.0 0.0 . 53 . . Atlas-SNP OR4C46 119749 hgsc.bcm.edu hg19 11 51516034 51516034 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OR4C46 NM_001004703 exon1 c.C753T p.P251P TGTGCCCTGCATA . 206.0 68.0 129.0 0.0 . 96 . . Atlas-SNP OR4C16 219428 hgsc.bcm.edu hg19 11 55339975 55339975 + Silent SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OR4C16 NM_001004701 exon1 c.C372A p.I124I GGACATCTGTAAG . 110.0 50.0 71.0 0.0 . 104 . . Atlas-SNP OR5AS1 219447 hgsc.bcm.edu hg19 11 55798784 55798784 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OR5AS1 NM_001001921 exon1 c.T890A p.V297E AGGATGTGAAAAA . 37.0 11.0 21.0 0.0 . 121 . . Atlas-SNP HNRNPUL2 221092 hgsc.bcm.edu hg19 11 62491884 62491884 + Missense_Mutation SNP T T G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HNRNPUL2 NM_001079559 exon2 c.A553C p.S185R TTTCACTATCCTG . 243.0 43.0 103.0 0.0 . 41 . . Atlas-SNP ATL3 25923 hgsc.bcm.edu hg19 11 63396832 63396832 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ATL3 NM_015459 exon13 c.G1585T p.A529S CAACTGCATCCCT . 255.0 35.0 97.0 0.0 . 31 . . Atlas-SNP ESRRA 2101 hgsc.bcm.edu hg19 11 64082291 64082291 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ESRRA NM_004451 exon5 c.G650T p.G217V CCGCAGGCCCTGA . 74.0 8.0 33.0 0.0 . 56 . . Atlas-SNP VPS51 738 hgsc.bcm.edu hg19 11 64878964 64878964 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_013265 exon10 c.C2254G p.L752V CACTTGCTGCTGG . 202.0 24.0 64.0 0.0 . . . . Atlas-SNP SUV420H1 51111 hgsc.bcm.edu hg19 11 67957441 67957441 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SUV420H1 NM_017635 exon2 c.A103T p.T35S TCCCCGTGTGCTG . 316.0 21.0 144.0 0.0 . 125 . . Atlas-SNP LRTOMT 220074 hgsc.bcm.edu hg19 11 71819726 71819726 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . LRTOMT NM_001145309 exon9 c.C631A p.L211M GCAGACCTGGTGC . 56.0 4.0 17.0 0.0 . 20 . . Atlas-SNP PLEKHB1 58473 hgsc.bcm.edu hg19 11 73372585 73372585 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PLEKHB1 NM_021200 exon8 c.C670T p.L224F GGCATGCTTGCGG . 66.0 14.0 13.0 0.0 . 16 . . Atlas-SNP RPS3 6188 hgsc.bcm.edu hg19 11 75110602 75110602 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RPS3 NM_001256802 exon1 c.A11G p.Q4R CAGTGCAAATATC . 157.0 9.0 42.0 0.0 . 20 . . Atlas-SNP MYO7A 4647 hgsc.bcm.edu hg19 11 76858899 76858899 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MYO7A NM_001127179 exon4 c.C188G p.S63W CCACGTCGGTCCA . 128.0 15.0 27.0 0.0 . 164 . . Atlas-SNP GDPD4 220032 hgsc.bcm.edu hg19 11 76969478 76969478 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GDPD4 NM_182833 exon10 c.G817A p.D273N GGAAATCCCAGTT . 277.0 25.0 101.0 0.0 . 49 . . Atlas-SNP KBTBD3 143879 hgsc.bcm.edu hg19 11 105925003 105925003 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KBTBD3 NM_152433 exon3 c.C413G p.S138C GCTTTGGATAGGA . 232.0 11.0 105.0 0.0 . 59 . . Atlas-SNP ARHGEF12 23365 hgsc.bcm.edu hg19 11 120317715 120317715 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ARHGEF12 NM_015313 exon18 c.G1510C p.E504Q GATGCAGAGCGAG . 206.0 20.0 73.0 0.0 . 133 . . Atlas-SNP SCN3B 55800 hgsc.bcm.edu hg19 11 123513234 123513234 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SCN3B NM_018400 exon3 c.T365A p.V122E CGGGACACATTGC . 128.0 11.0 46.0 0.0 . 53 . . Atlas-SNP OR8B2 26595 hgsc.bcm.edu hg19 11 124252995 124252995 + Missense_Mutation SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OR8B2 NM_001005468 exon1 c.T245G p.L82R TTCATTAGCATTT . 276.0 13.0 107.0 0.0 . 42 . . Atlas-SNP OR8B8 26493 hgsc.bcm.edu hg19 11 124310110 124310110 + Missense_Mutation SNP C C T rs147220624 bycluster;by1000genomes;alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OR8B8 NM_012378 exon1 c.G872A p.S291N CTCAGGCTATAAA . 119.0 10.0 49.0 0.0 . 76 . C|0.999;A|0.001 Atlas-SNP B4GALNT3 283358 hgsc.bcm.edu hg19 12 668557 668557 + Nonsense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . B4GALNT3 NM_173593 exon19 c.G2858A p.W953X ACCGCTGGGGCGG . 102.0 11.0 45.0 0.0 . 64 . . Atlas-SNP NRIP2 83714 hgsc.bcm.edu hg19 12 2944113 2944113 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NRIP2 NM_031474 exon1 c.C37T p.P13S AGGAGGGTCTCCA . 137.0 10.0 60.0 0.0 . 21 . . Atlas-SNP FGF6 2251 hgsc.bcm.edu hg19 12 4553334 4553334 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 FGF6,NS,carcinoma,0,1 FGF6 NM_020996 exon2 c.G415A p.V139I TGGCAACGAAGAG . 215.0 24.0 43.0 0.0 . 40 . . Atlas-SNP VAMP1 6843 hgsc.bcm.edu hg19 12 6575091 6575091 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . VAMP1 NM_014231 exon3 c.G205C p.A69P CATCAGCTCGGTC . 157.0 16.0 71.0 0.0 . 6 . . Atlas-SNP ATN1 1822 hgsc.bcm.edu hg19 12 7045220 7045220 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ATN1 NM_001007026 exon5 c.A790T p.S264C GTATCAAGCTCTG . 30.0 12.0 20.0 0.0 . 95 . . Atlas-SNP SLC2A3 6515 hgsc.bcm.edu hg19 12 8086448 8086448 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SLC2A3 NM_006931 exon2 c.C66A p.F22L AAATTGGAAAGAG . 159.0 12.0 71.0 0.0 . 83 . . Atlas-SNP CLEC4E 26253 hgsc.bcm.edu hg19 12 8692481 8692481 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CLEC4E NM_014358 exon2 c.C100T p.L34F CACTGAGAAATAG . 123.0 24.0 44.0 0.0 . 30 . . Atlas-SNP CDKN1B 1027 hgsc.bcm.edu hg19 12 12871889 12871889 + Splice_Site SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CDKN1B NM_004064 exon2 c.605+1G>A . AGCTCGGTGGGTT . 46.0 8.0 16.0 0.0 . 48 . . Atlas-SNP SMCO3 0 hgsc.bcm.edu hg19 12 14959587 14959587 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_001013698 exon2 c.G28C p.E10Q GGTTCTCTGGGTA . 122.0 11.0 70.0 0.0 . . . . Atlas-SNP RECQL 5965 hgsc.bcm.edu hg19 12 21643210 21643210 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RECQL NM_032941 exon5 c.G317C p.G106A TCCTTTCCAGCCA . 171.0 30.0 95.0 0.0 . 45 . . Atlas-SNP TENC1 23371 hgsc.bcm.edu hg19 12 53446269 53446269 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TENC1 NM_015319 exon3 c.A245T p.E82V AATGTGAAGCAAA . 173.0 24.0 64.0 0.0 . 148 . . Atlas-SNP HOXC4 3221 hgsc.bcm.edu hg19 12 54447739 54447739 + Missense_Mutation SNP C C A rs377491433 alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HOXC4 NM_014620 exon3 c.C33A p.N11K CTCTAACTACATC . 135.0 14.0 38.0 0.0 . 29 . . Atlas-SNP HOXC4 3221 hgsc.bcm.edu hg19 12 54447841 54447841 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HOXC4 NM_014620 exon3 c.C135A p.F45L GGGATTCCAGCAT . 100.0 9.0 49.0 0.0 . 29 . . Atlas-SNP OR6C74 254783 hgsc.bcm.edu hg19 12 55641327 55641327 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OR6C74 NM_001005490 exon1 c.G256A p.G86S GCAACAGGTGATA . 284.0 30.0 92.0 0.0 . 52 . . Atlas-SNP OR6C75 390323 hgsc.bcm.edu hg19 12 55759521 55759521 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OR6C75 NM_001005497 exon1 c.G627T p.L209F CACCTTGACATTA . 371.0 16.0 141.0 0.0 . 67 . . Atlas-SNP CNPY2 10330 hgsc.bcm.edu hg19 12 56708752 56708752 + Splice_Site SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CNPY2 NM_014255 exon4 c.89-2A>G . GCATGCTGGTGGA . 144.0 15.0 55.0 0.0 . 16 . . Atlas-SNP BAZ2A 11176 hgsc.bcm.edu hg19 12 56993854 56993854 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 BAZ2A_ENST00000551812,colon,carcinoma,0,2 BAZ2A NM_013449 exon25 c.G4925T p.R1642L CAGACACGAATGC . 198.0 20.0 55.0 0.0 . 263 . . Atlas-SNP LRP1 4035 hgsc.bcm.edu hg19 12 57571304 57571304 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . LRP1 NM_002332 exon26 c.G4291T p.G1431C GAGACCGGCTCTG . 130.0 19.0 45.0 0.0 . 428 . . Atlas-SNP TBK1 29110 hgsc.bcm.edu hg19 12 64882345 64882345 + Silent SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TBK1 NM_013254 exon12 c.A1419G p.R473R TATCAGAAACATT . 298.0 116.0 116.0 0.0 . 149 . . Atlas-SNP WIF1 11197 hgsc.bcm.edu hg19 12 65448938 65448938 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . WIF1 NM_007191 exon9 c.C978G p.C326W ACATTGGCATTTG . 98.0 7.0 69.0 0.0 . 96 . . Atlas-SNP OSBPL8 114882 hgsc.bcm.edu hg19 12 76752567 76752567 + Nonsense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OSBPL8 NM_020841 exon22 c.A2353T p.K785X TTGGCTTATGTTT . 219.0 80.0 133.0 0.0 . 86 . . Atlas-SNP PTPRQ 374462 hgsc.bcm.edu hg19 12 81004359 81004359 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PTPRQ NM_001145026 exon25 c.G4357C p.E1453Q TATGTAGAAGGGA . 156.0 13.0 52.0 0.0 . 119 . . Atlas-SNP PPFIA2 8499 hgsc.bcm.edu hg19 12 81746949 81746949 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PPFIA2 NM_001220476 exon16 c.C1943A p.T648K GCTAGCGTCTGGG . 163.0 7.0 85.0 0.0 . 207 . . Atlas-SNP ALX1 8092 hgsc.bcm.edu hg19 12 85674229 85674229 + Missense_Mutation SNP C C A rs145944049 bycluster;byfrequency;alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ALX1 NM_006982 exon1 c.C190A p.R64S CACGTGCGCTTGG . 45.0 24.0 20.0 0.0 . 61 . C|0.997;T|0.003 Atlas-SNP FGD6 55785 hgsc.bcm.edu hg19 12 95603522 95603522 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FGD6 NM_018351 exon2 c.C1538G p.A513G GAGGCAGCCTTTT . 184.0 8.0 79.0 0.0 . 127 . . Atlas-SNP TMPO 7112 hgsc.bcm.edu hg19 12 98938066 98938066 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TMPO NM_001032283 exon5 c.G722A p.G241E AAGGCGGACCTCT . 261.0 34.0 92.0 0.0 . 111 . . Atlas-SNP ALDH1L2 160428 hgsc.bcm.edu hg19 12 105464456 105464456 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ALDH1L2 NM_001034173 exon3 c.T320C p.F107S GTGCAGAAAGGGA . 208.0 15.0 99.0 0.0 . 71 . . Atlas-SNP BRAP 8315 hgsc.bcm.edu hg19 12 112093435 112093435 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . BRAP NM_006768 exon10 c.C1246G p.L416V ATTCCAGCTGGCT . 124.0 12.0 75.0 0.0 . 42 . . Atlas-SNP MED13L 23389 hgsc.bcm.edu hg19 12 116429410 116429410 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MED13L NM_015335 exon17 c.G3349A p.D1117N CGGAATCGGAGAG . 209.0 21.0 47.0 0.0 . 193 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124305198 124305198 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DNAH10 NM_207437 exon23 c.G3718T p.A1240S GCTAACGCTGAGA . 174.0 14.0 81.0 0.0 . 888 . . Atlas-SNP DHX37 57647 hgsc.bcm.edu hg19 12 125453127 125453127 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DHX37 NM_032656 exon10 c.G1361T p.G454V CACTCGCCACTGT . 57.0 7.0 15.0 0.0 . 114 . . Atlas-SNP ZNF10 7556 hgsc.bcm.edu hg19 12 133733009 133733009 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZNF10 NM_015394 exon5 c.A1177G p.I393V CATCTCATTCTGC . 184.0 13.0 80.0 0.0 . 58 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 35731313 35731313 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NBEA NM_015678 exon21 c.A2750G p.Y917C TGGTCTACAATAT . 193.0 34.0 101.0 0.0 . 340 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 35756573 35756573 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 NBEA,NS,carcinoma,0,1 NBEA NM_015678 exon29 c.G4739A p.R1580H AGTATCGTGACAT . 262.0 25.0 120.0 0.0 . 340 . . Atlas-SNP MAB21L1 4081 hgsc.bcm.edu hg19 13 36050193 36050193 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MAB21L1 NM_005584 exon1 c.C83A p.A28D GTTTTGGCAATGG . 119.0 14.0 51.0 0.0 . 52 . . Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39265055 39265055 + Nonsense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FREM2 NM_207361 exon1 c.G3574T p.E1192X CAGCCAGAGATGT . 313.0 40.0 128.0 0.0 . 385 . . Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39265478 39265478 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 FREM2,rectum,carcinoma,0,1 FREM2 NM_207361 exon1 c.G3997C p.D1333H GATTTAGATTCAG . 188.0 28.0 41.0 0.0 . 385 . . Atlas-SNP AKAP11 11215 hgsc.bcm.edu hg19 13 42877120 42877120 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . AKAP11 NM_016248 exon8 c.C4238A p.S1413X TGTTTTCAAACAA . 76.0 7.0 39.0 0.0 . 146 . . Atlas-SNP PCDH17 27253 hgsc.bcm.edu hg19 13 58207559 58207559 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PCDH17 NM_001040429 exon1 c.C879T p.L293L GGAGCTCTTCTCC . 89.0 10.0 47.0 0.0 . 304 . . Atlas-SNP COL4A2 1284 hgsc.bcm.edu hg19 13 111082761 111082761 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . COL4A2 NM_001846 exon9 c.A563G p.E188G CTGGAGAGCCTGG . 187.0 8.0 62.0 0.0 . 178 . . Atlas-SNP COL4A2 1284 hgsc.bcm.edu hg19 13 111117937 111117937 + Silent SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . COL4A2 NM_001846 exon25 c.G1962A p.G654G CGCAGGGACCCCA . 66.0 25.0 28.0 0.0 . 178 . . Atlas-SNP KLHL33 123103 hgsc.bcm.edu hg19 14 20897958 20897958 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KLHL33 NM_001109997 exon2 c.C877A p.L293I ACCTGAGAGTTGA . 100.0 8.0 32.0 0.0 . 37 . . Atlas-SNP MYH6 4624 hgsc.bcm.edu hg19 14 23866803 23866803 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MYH6 NM_002471 exon16 c.A1911T p.K637N GCCTCCTTTGCTT . 110.0 15.0 39.0 0.0 . 274 . . Atlas-SNP NOVA1 4857 hgsc.bcm.edu hg19 14 26917704 26917704 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NOVA1 NM_002515 exon5 c.C985A p.L329I TGTTGAGATTATA . 78.0 8.0 26.0 0.0 . 146 . . Atlas-SNP MAP4K5 11183 hgsc.bcm.edu hg19 14 50915494 50915494 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MAP4K5 NM_006575 exon15 c.A1072G p.M358V TTACCATTTCATC . 141.0 23.0 67.0 0.0 . 48 . . Atlas-SNP TMEM260 0 hgsc.bcm.edu hg19 14 57070549 57070549 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_017799 exon4 c.G361A p.A121T TCATCTGCTGGAG . 303.0 24.0 135.0 0.0 . . . . Atlas-SNP DAAM1 23002 hgsc.bcm.edu hg19 14 59820665 59820665 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DAAM1 NM_014992 exon19 c.T2369A p.V790E CAGAAGTGAAACC . 157.0 11.0 71.0 0.0 . 95 . . Atlas-SNP C14orf39 317761 hgsc.bcm.edu hg19 14 60921835 60921835 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . C14orf39 NM_174978 exon16 c.G1387C p.V463L TTTGAACTTCAGG . 280.0 16.0 110.0 0.0 . 79 . . Atlas-SNP PRKCH 5583 hgsc.bcm.edu hg19 14 61997206 61997206 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 PRKCH,colon,carcinoma,-1,1 PRKCH NM_006255 exon12 c.G1654T p.A552S GGTCACGCGCCTT . 137.0 8.0 73.0 0.0 . 89 . . Atlas-SNP HIF1A 3091 hgsc.bcm.edu hg19 14 62207716 62207716 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HIF1A NM_001243084 exon12 c.A1975T p.I659F GAAGACATTAAAA . 158.0 62.0 71.0 0.0 . 120 . . Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64518635 64518635 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SYNE2 NM_182914 exon48 c.G8004T p.L2668F TGCCTTGACCACT . 225.0 31.0 102.0 0.0 . 577 . . Atlas-SNP SLC10A1 6554 hgsc.bcm.edu hg19 14 70252897 70252897 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SLC10A1 NM_003049 exon2 c.T484C p.S162P CCAGTGATATCAC . 225.0 17.0 101.0 0.0 . 32 . . Atlas-SNP SIPA1L1 26037 hgsc.bcm.edu hg19 14 72190408 72190408 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SIPA1L1 NM_015556 exon16 c.G4316A p.S1439N TCACCAGTGCCCG . 122.0 19.0 50.0 0.0 . 219 . . Atlas-SNP DPF3 8110 hgsc.bcm.edu hg19 14 73159816 73159816 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DPF3 NM_012074 exon7 c.C710T p.S237F GGTGGGGACCGAG . 300.0 31.0 143.0 0.0 . 117 . . Atlas-SNP GPATCH2L 55668 hgsc.bcm.edu hg19 14 76668083 76668083 + Silent SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_017926 exon10 c.A1338G p.K446K CCCCAAATCACCC . 191.0 13.0 94.0 0.0 . . . . Atlas-SNP ZDHHC22 283576 hgsc.bcm.edu hg19 14 77606003 77606003 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZDHHC22 NM_174976 exon2 c.C79T p.L27F GGAAGAGCTGCAG . 54.0 10.0 27.0 0.0 . 30 . . Atlas-SNP RPS6KA5 9252 hgsc.bcm.edu hg19 14 91338575 91338575 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RPS6KA5 NM_004755 exon17 c.C2252G p.T751S GTACTGGTGCTAG . 335.0 37.0 113.0 0.0 . 135 . . Atlas-SNP RCOR1 23186 hgsc.bcm.edu hg19 14 103174914 103174914 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RCOR1 NM_015156 exon6 c.A773G p.E258G AGCGGGAGGAGAG . 85.0 10.0 39.0 0.0 . 39 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105419292 105419292 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . AHNAK2 NM_138420 exon7 c.G2496T p.K832N TTTGAACTTGCTG . 169.0 67.0 94.0 0.0 . 719 . . Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28446674 28446674 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HERC2 NM_004667 exon48 c.C7644G p.S2548R CGTCTGGCTCTCC . 537.0 24.0 122.0 0.0 . 501 . . Atlas-SNP ARHGAP11A 9824 hgsc.bcm.edu hg19 15 32928928 32928928 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ARHGAP11A NM_014783 exon12 c.G1954A p.V652I ACTATAGTAGAAT . 204.0 92.0 78.0 0.0 . 84 . . Atlas-SNP AQR 9716 hgsc.bcm.edu hg19 15 35198872 35198872 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . AQR NM_014691 exon18 c.C1705A p.P569T TTGTGGGACGTAC . 139.0 13.0 49.0 0.0 . 139 . . Atlas-SNP BAHD1 22893 hgsc.bcm.edu hg19 15 40757537 40757537 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . BAHD1 NM_014952 exon6 c.T2056A p.L686M GAGCCCTTGCAGA . 119.0 13.0 70.0 0.0 . 68 . . Atlas-SNP TGM7 116179 hgsc.bcm.edu hg19 15 43571883 43571883 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TGM7 NM_052955 exon10 c.G1618A p.G540S TACCACCCCCATG . 101.0 14.0 32.0 0.0 . 86 . . Atlas-SNP TP53BP1 7158 hgsc.bcm.edu hg19 15 43749109 43749109 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TP53BP1 NM_001141980 exon12 c.C1697G p.P566R TCAGCAGGAACAA . 156.0 7.0 88.0 0.0 . 157 . . Atlas-SNP DUOXA2 405753 hgsc.bcm.edu hg19 15 45408389 45408389 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DUOXA2 NM_207581 exon3 c.C273A p.S91R CTTCAGCGCAGCG . 112.0 13.0 36.0 0.0 . 38 . . Atlas-SNP BLOC1S6 26258 hgsc.bcm.edu hg19 15 45884374 45884374 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_012388 exon2 c.T124A p.L42M GAGGACTTGACTA . 133.0 7.0 53.0 0.0 . . . . Atlas-SNP SEMA6D 80031 hgsc.bcm.edu hg19 15 48063289 48063289 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SEMA6D NM_153618 exon19 c.C2529A p.N843K CTCAAACTCCAAT . 210.0 10.0 69.0 0.0 . 322 . . Atlas-SNP SHC4 399694 hgsc.bcm.edu hg19 15 49148299 49148299 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SHC4 NM_203349 exon8 c.C1093T p.H365Y CGGCATGGCTATC . 159.0 10.0 79.0 0.0 . 70 . . Atlas-SNP DMXL2 23312 hgsc.bcm.edu hg19 15 51791589 51791589 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DMXL2 NM_001174116 exon18 c.G3832C p.V1278L ATTTGACAGCATG . 171.0 17.0 75.0 0.0 . 262 . . Atlas-SNP LEO1 123169 hgsc.bcm.edu hg19 15 52251010 52251010 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . LEO1 NM_138792 exon6 c.C1174A p.Q392K AATACTGAGGATC . 317.0 17.0 99.0 0.0 . 46 . . Atlas-SNP LEO1 123169 hgsc.bcm.edu hg19 15 52258056 52258056 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . LEO1 NM_138792 exon2 c.C704G p.P235R AGCTGTGGTTGTT . 477.0 35.0 148.0 0.0 . 46 . . Atlas-SNP GNB5 10681 hgsc.bcm.edu hg19 15 52476791 52476791 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GNB5 NM_016194 exon2 c.A83T p.K28M GACTTCTTGAAAA . 112.0 10.0 60.0 0.0 . 28 . . Atlas-SNP UNC13C 440279 hgsc.bcm.edu hg19 15 54592572 54592572 + Splice_Site SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . UNC13C NM_001080534 exon11 c.4268+1G>A . TATGACGTAAGTA . 104.0 6.0 66.0 0.0 . 674 . . Atlas-SNP STOML1 9399 hgsc.bcm.edu hg19 15 74277722 74277722 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . STOML1 NM_001256672 exon5 c.G727T p.A243S GCAGGGCCAGCTG . 104.0 15.0 50.0 0.0 . 22 . . Atlas-SNP RCN2 5955 hgsc.bcm.edu hg19 15 77227917 77227917 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RCN2 NM_002902 exon3 c.G301A p.E101K ATGCAAGAAGCAA . 176.0 15.0 49.0 0.0 . 16 . . Atlas-SNP RCN2 5955 hgsc.bcm.edu hg19 15 77241537 77241537 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RCN2 NM_001271837 exon8 c.G982T p.D328Y CATGATGACTATT . 77.0 4.0 41.0 0.0 . 16 . . Atlas-SNP PEAK1 0 hgsc.bcm.edu hg19 15 77425574 77425574 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_024776 exon7 c.G3850T p.E1284X CTTCCTCCCGATT . 321.0 33.0 100.0 0.0 . . . . Atlas-SNP LINGO1 84894 hgsc.bcm.edu hg19 15 77906599 77906599 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . LINGO1 NM_032808 exon2 c.C1650A p.F550L GAAGGGGAAAGGC . 77.0 30.0 59.0 0.0 . 76 . . Atlas-SNP ARNT2 9915 hgsc.bcm.edu hg19 15 80767490 80767490 + Missense_Mutation SNP T T G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ARNT2 NM_014862 exon5 c.T548G p.L183R GCACACTGTATGA . 162.0 31.0 69.0 0.0 . 88 . . Atlas-SNP IL16 3603 hgsc.bcm.edu hg19 15 81589305 81589305 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . IL16 NM_001172128 exon13 c.G1939A p.E647K CCACAGGAAGACA . 195.0 33.0 41.0 0.0 . 254 . . Atlas-SNP STARD5 80765 hgsc.bcm.edu hg19 15 81615246 81615246 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . STARD5 NM_181900 exon2 c.G143T p.G48V AGGTTCCCTGGAA . 154.0 14.0 68.0 0.0 . 20 . . Atlas-SNP RHCG 51458 hgsc.bcm.edu hg19 15 90023512 90023512 + Nonsense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RHCG NM_016321 exon4 c.C650A p.S217X AGGTCCGACTGGT . 88.0 7.0 68.0 0.0 . 49 . . Atlas-SNP MCTP2 55784 hgsc.bcm.edu hg19 15 94901714 94901714 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 MCTP2,NS,carcinoma,0,1 MCTP2 NM_001159643 exon9 c.C1174T p.L392L TAGACACTGTGTA . 104.0 0.0 36.0 0.0 . 122 . . Atlas-SNP MCTP2 55784 hgsc.bcm.edu hg19 15 94901825 94901825 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MCTP2 NM_001159643 exon9 c.G1285C p.E429Q AAGCATGAGGAAC . 140.0 20.0 49.0 0.0 . 122 . . Atlas-SNP FAM169B 283777 hgsc.bcm.edu hg19 15 99023985 99023985 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FAM169B NM_182562 exon4 c.G28C p.V10L GCACAACCCTTTC . 116.0 8.0 59.0 0.0 . 23 . . Atlas-SNP LRRK1 79705 hgsc.bcm.edu hg19 15 101550657 101550657 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . LRRK1 NM_024652 exon8 c.T992C p.L331P GCAGGCTACTTGA . 198.0 71.0 104.0 0.0 . 310 . . Atlas-SNP MAPK8IP3 23162 hgsc.bcm.edu hg19 16 1816311 1816311 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MAPK8IP3 NM_015133 exon22 c.C2717G p.P906R CTGGGCCCAGCGA . 88.0 18.0 41.0 0.0 . 164 . . Atlas-SNP TSC2 7249 hgsc.bcm.edu hg19 16 2098719 2098719 + Nonsense_Mutation SNP C C T rs137854105 TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TSC2 NM_001114382 exon2 c.C103T p.Q35X GGTAAACAGACGG . 184.0 10.0 78.0 0.0 . 364 . . Atlas-SNP RSL1D1 26156 hgsc.bcm.edu hg19 16 11944139 11944139 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RSL1D1 NM_015659 exon2 c.G242T p.R81I TACAATCTGACCC . 63.0 31.0 53.0 0.0 . 40 . . Atlas-SNP TMC7 79905 hgsc.bcm.edu hg19 16 19049310 19049310 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TMC7 NM_024847 exon8 c.G1120T p.G374W GTTTTAGGGGCAT . 283.0 41.0 120.0 0.0 . 75 . . Atlas-SNP GGA2 23062 hgsc.bcm.edu hg19 16 23489767 23489767 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GGA2 NM_015044 exon13 c.C1214T p.P405L CCGCCTGGCAGCG . 158.0 18.0 63.0 0.0 . 49 . . Atlas-SNP IL21R 50615 hgsc.bcm.edu hg19 16 27448870 27448870 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . IL21R NM_181079 exon5 c.C280A p.H94N TCGGCCCACAATG . 80.0 9.0 32.0 0.0 . 95 . . Atlas-SNP GTF3C1 2975 hgsc.bcm.edu hg19 16 27517278 27517278 + Missense_Mutation SNP G G T rs140459536 alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GTF3C1 NM_001520 exon10 c.C1712A p.A571E CTGTCCGCACAGT . 148.0 19.0 58.0 0.0 . 210 . G|1.000;A|0.000 Atlas-SNP CD19 930 hgsc.bcm.edu hg19 16 28946809 28946809 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CD19 NM_001178098 exon5 c.G880A p.A294T GTCTCAGCTGTGA . 304.0 21.0 152.0 0.0 . 65 . . Atlas-SNP SETD1A 9739 hgsc.bcm.edu hg19 16 30977205 30977205 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SETD1A NM_014712 exon8 c.G2003T p.R668L TGGACCGACTTGG . 191.0 25.0 90.0 0.0 . 143 . . Atlas-SNP ZNF668 79759 hgsc.bcm.edu hg19 16 31072640 31072640 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZNF668 NM_001172669 exon4 c.T1678A p.S560T GGTGTGAGCGCTC . 113.0 9.0 45.0 0.0 . 121 . . Atlas-SNP DNAJA2 10294 hgsc.bcm.edu hg19 16 46991020 46991020 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DNAJA2 NM_005880 exon9 c.G1160T p.R387M TCACGCCTCTGAC . 166.0 12.0 69.0 0.0 . 28 . . Atlas-SNP CHD9 80205 hgsc.bcm.edu hg19 16 53358701 53358701 + Missense_Mutation SNP T T G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CHD9 NM_025134 exon39 c.T8540G p.L2847R GTCCTCTCAATGA . 188.0 59.0 97.0 0.0 . 203 . . Atlas-SNP SLC38A7 55238 hgsc.bcm.edu hg19 16 58706093 58706093 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SLC38A7 NM_018231 exon9 c.C938A p.S313Y GGATAGGACAGGA . 193.0 25.0 53.0 0.0 . 26 . . Atlas-SNP CES4A 283848 hgsc.bcm.edu hg19 16 67029593 67029593 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CES4A NM_173815 exon2 c.A121G p.M41V AAACAGATGCATG . 95.0 4.0 58.0 0.0 . 24 . . Atlas-SNP CES4A 283848 hgsc.bcm.edu hg19 16 67038121 67038121 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CES4A NM_173815 exon9 c.G1074T p.L358F GCTCTTGCCTTAT . 166.0 10.0 70.0 0.0 . 24 . . Atlas-SNP ZDHHC1 29800 hgsc.bcm.edu hg19 16 67432171 67432171 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZDHHC1 NM_013304 exon8 c.G871C p.A291P CCTTGGCCTCCTG . 125.0 23.0 57.0 0.0 . 28 . . Atlas-SNP CDH1 999 hgsc.bcm.edu hg19 16 68856129 68856129 + Splice_Site SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 CDH1,NS,carcinoma,0,2 CDH1 NM_004360 exon12 c.1936+1G>A . ACCCAAGTGGGTA . 100.0 4.0 46.0 0.0 . 535 . . Atlas-SNP AP1G1 164 hgsc.bcm.edu hg19 16 71823203 71823203 + Silent SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . AP1G1 NM_001030007 exon2 c.C180T p.G60G AGGGTAGCCCAGC . 147.0 19.0 64.0 0.0 . 83 . . Atlas-SNP ZFHX3 463 hgsc.bcm.edu hg19 16 72984568 72984568 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZFHX3 NM_006885 exon3 c.G3016C p.D1006H GCTTGTCTGTCTT . 133.0 52.0 88.0 0.0 . 404 . . Atlas-SNP ADAD2 161931 hgsc.bcm.edu hg19 16 84229967 84229967 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ADAD2 NM_139174 exon9 c.T1763A p.V588E GGCGTGTGAAGGC . 90.0 30.0 36.0 0.0 . 46 . . Atlas-SNP SPNS2 124976 hgsc.bcm.edu hg19 17 4416595 4416595 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SPNS2 NM_001124758 exon2 c.C424T p.L142L GCCGGCCTGCTGC . 77.0 4.0 38.0 0.0 . 24 . . Atlas-SNP DLG4 1742 hgsc.bcm.edu hg19 17 7097812 7097812 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DLG4 NM_001365 exon14 c.C1433T p.A478V AACAGGGCCCTGG . 74.0 11.0 25.0 0.0 . 110 . . Atlas-SNP GPS2 2874 hgsc.bcm.edu hg19 17 7216697 7216697 + Splice_Site SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GPS2 NM_004489 exon9 c.724+2T>C . GTTATCACCTGTC . 106.0 12.0 38.0 0.0 . 44 . . Atlas-SNP TMEM102 284114 hgsc.bcm.edu hg19 17 7339378 7339378 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TMEM102 NM_178518 exon2 c.C188T p.A63V TCCGGGCCAAGGA . 199.0 32.0 46.0 0.0 . 11 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577107 7577107 + Nonsense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 TP53_ENST00000455263,NS,carcinoma,-1,2 TP53 NM_000546 exon8 c.T831A p.C277X CCCAGGACAGGCA . 67.0 10.0 35.0 0.0 . 33396 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578271 7578271 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 TP53_ENST00000545858,NS,carcinoma,0,1 TP53 NM_000546 exon6 c.A578G p.H193R ATAAGATGCTGAG . 188.0 23.0 64.0 0.0 . 33396 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578449 7578449 + Missense_Mutation SNP C C A rs193920817 alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 TP53_ENST00000545858,NS,lymphoid_neoplasm,0,1 TP53 NM_000546 exon5 c.G481T p.A161S AGATGGCCATGGC . 108.0 14.0 37.0 0.0 . 33396 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7734001 7734001 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DNAH2 NM_020877 exon78 c.A12071G p.Y4024C GCCTCTATCTCGA . 161.0 19.0 64.0 0.0 . 498 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11775087 11775087 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DNAH9 NM_001372 exon52 c.A10226T p.Y3409F GGCCCTACCTGAG . 154.0 33.0 58.0 0.0 . 695 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11786904 11786904 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DNAH9 NM_001372 exon56 c.C10808A p.S3603Y TGCAGTCCGATCT . 116.0 11.0 44.0 0.0 . 695 . . Atlas-SNP ARHGAP44 9912 hgsc.bcm.edu hg19 17 12819314 12819314 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ARHGAP44 NM_014859 exon5 c.T373A p.F125I CCCCTGTTTTTGC . 194.0 25.0 65.0 0.0 . 55 . . Atlas-SNP KCNJ18 100134444 hgsc.bcm.edu hg19 17 21319098 21319098 + Silent SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_001194958 exon3 c.G444T p.L148L CGGGCTGCGCTGT . 148.0 27.0 41.0 0.0 . . . . Atlas-SNP FOXN1 8456 hgsc.bcm.edu hg19 17 26851109 26851109 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FOXN1 NM_003593 exon1 c.G122T p.S41I CACAGAGTGTAAG . 115.0 16.0 38.0 0.0 . 51 . . Atlas-SNP PHF12 57649 hgsc.bcm.edu hg19 17 27251239 27251239 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PHF12 NM_020889 exon4 c.G403T p.D135Y CAGTGTCACTGCT . 145.0 6.0 72.0 0.0 . 69 . . Atlas-SNP TMEM132E 124842 hgsc.bcm.edu hg19 17 32956067 32956067 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TMEM132E NM_207313 exon5 c.C912A p.D304E GCTGGACTTTGAA . 190.0 9.0 55.0 0.0 . 122 . . Atlas-SNP NLE1 54475 hgsc.bcm.edu hg19 17 33469091 33469091 + Silent SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NLE1 NM_018096 exon2 c.T69C p.D23D GCCCTCATCCTGG . 54.0 16.0 36.0 0.0 . 42 . . Atlas-SNP KRTAP3-3 85293 hgsc.bcm.edu hg19 17 39150290 39150290 + Nonsense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KRTAP3-3 NM_033185 exon1 c.C60A p.C20X AGAGGAGCAGATG . 183.0 9.0 50.0 0.0 . 11 . . Atlas-SNP ATP6V0A1 535 hgsc.bcm.edu hg19 17 40652840 40652840 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ATP6V0A1 NM_001130020 exon16 c.G1816T p.A606S TATGATGCTCATA . 655.0 63.0 177.0 0.0 . 67 . . Atlas-SNP WNK4 65266 hgsc.bcm.edu hg19 17 40946819 40946819 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . WNK4 NM_032387 exon14 c.C2380G p.H794D CTGGAGCACAGGA . 155.0 51.0 89.0 0.0 . 182 . . Atlas-SNP CNTD1 124817 hgsc.bcm.edu hg19 17 40961398 40961398 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CNTD1 NM_173478 exon7 c.C838A p.Q280K CATTTGCAGAGCA . 188.0 11.0 77.0 0.0 . 22 . . Atlas-SNP CCDC43 124808 hgsc.bcm.edu hg19 17 42756228 42756228 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CCDC43 NM_144609 exon5 c.G671C p.R224P GGTTATCGCTTTC . 287.0 18.0 155.0 0.0 . 34 . . Atlas-SNP GJC1 10052 hgsc.bcm.edu hg19 17 42883077 42883077 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GJC1 NM_005497 exon3 c.G109C p.A37P CTACAGCTGTAAG . 223.0 20.0 62.0 0.0 . 45 . . Atlas-SNP NFE2L1 4779 hgsc.bcm.edu hg19 17 46136906 46136906 + Missense_Mutation SNP A A T rs141070896 alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NFE2L1 NM_003204 exon6 c.A2222T p.Q741L CGCTCCAGTACGC . 62.0 7.0 21.0 0.0 . 60 . A|1.000;G|0.000 Atlas-SNP DLX4 1748 hgsc.bcm.edu hg19 17 48046980 48046980 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 DLX4,caecum,carcinoma,0,1 DLX4 NM_138281 exon1 c.C148T p.P50S TCCAGGCCGTATG . 61.0 7.0 12.0 0.0 . 25 . . Atlas-SNP SGCA 6442 hgsc.bcm.edu hg19 17 48244792 48244792 + Missense_Mutation SNP G G T rs371675217 alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 SGCA,colon,carcinoma,0,1 SGCA NM_001135697 exon2 c.G101T p.R34L TGGGCCGTGTCTT . 170.0 8.0 65.0 0.0 . 35 . . Atlas-SNP EPN3 55040 hgsc.bcm.edu hg19 17 48614425 48614425 + Missense_Mutation SNP C C T rs146173668 TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . EPN3 NM_017957 exon2 c.C508T p.R170C TTCAGCCGCCGCT . 127.0 22.0 12.0 0.0 . 32 . C|1.000;T|0.000 Atlas-SNP CACNA1G 8913 hgsc.bcm.edu hg19 17 48695290 48695290 + Silent SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CACNA1G NM_001256325 exon30 c.G5247A p.Q1749Q GCCCCAGGTAGCC . 120.0 44.0 46.0 0.0 . 659 . . Atlas-SNP SPAG9 9043 hgsc.bcm.edu hg19 17 49067132 49067132 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SPAG9 NM_001130528 exon21 c.G2719A p.D907N AGATGTCCACTGT . 239.0 95.0 139.0 0.0 . 151 . . Atlas-SNP TOM1L1 10040 hgsc.bcm.edu hg19 17 52991114 52991114 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TOM1L1 NM_005486 exon5 c.G378C p.W126C GACTTGGTCACAG . 132.0 8.0 63.0 0.0 . 33 . . Atlas-SNP SMG8 55181 hgsc.bcm.edu hg19 17 57288227 57288227 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SMG8 NM_018149 exon1 c.A815G p.N272S AACTCAATGGAGC . 120.0 16.0 29.0 0.0 . 79 . . Atlas-SNP RPS6KB1 6198 hgsc.bcm.edu hg19 17 58013587 58013587 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RPS6KB1 NM_001272043 exon11 c.A990T p.R330S GAAAAGAAATGCT . 201.0 21.0 107.0 0.0 . 43 . . Atlas-SNP DDX42 11325 hgsc.bcm.edu hg19 17 61890756 61890756 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DDX42 NM_203499 exon15 c.G1844T p.R615L TGGTCCGGAACTT . 181.0 13.0 61.0 0.0 . 86 . . Atlas-SNP PSMC5 5705 hgsc.bcm.edu hg19 17 61908431 61908431 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PSMC5 NM_002805 exon8 c.C715T p.R239W ATGGCACGGGAAC . 140.0 11.0 61.0 0.0 . 41 . . Atlas-SNP CSH1 1442 hgsc.bcm.edu hg19 17 61972411 61972411 + Missense_Mutation SNP G G T rs61764004 TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 CSH1,brain,atypical_teratoid-rhabdoid_tumour,0,1 CSH1 NM_001317 exon5 c.C625A p.R209S CAGAGCGGCACTG . 209.0 9.0 77.0 1.0 . 18 . G|0.993;T|0.007 Atlas-SNP KIF19 124602 hgsc.bcm.edu hg19 17 72344027 72344027 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KIF19 NM_153209 exon9 c.A1036G p.I346V AAGAACATTAAGA . 67.0 10.0 8.0 0.0 . 102 . . Atlas-SNP CDR2L 30850 hgsc.bcm.edu hg19 17 72998268 72998268 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 HUMPPA,NS,carcinoma,0,1 . NM_014603 exon4 c.C451T p.R151C CGGGAACGCAGGC . 77.0 7.0 18.0 0.0 . . . . Atlas-SNP WBP2 23558 hgsc.bcm.edu hg19 17 73851333 73851333 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . WBP2 NM_012478 exon1 c.A46G p.N16D TGTTATTGACGAT . 222.0 51.0 98.0 0.0 . 17 . . Atlas-SNP FBF1 85302 hgsc.bcm.edu hg19 17 73916170 73916170 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FBF1 NM_001080542 exon18 c.G1804C p.E602Q CCCGTTCTAGCTC . 107.0 45.0 45.0 0.0 . 48 . . Atlas-SNP SPHK1 8877 hgsc.bcm.edu hg19 17 74383503 74383503 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SPHK1 NM_182965 exon6 c.C1249G p.P417A TTGGAGCCCAAGG . 122.0 15.0 45.0 0.0 . 24 . . Atlas-SNP ENGASE 64772 hgsc.bcm.edu hg19 17 77077980 77077980 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ENGASE NM_001042573 exon7 c.G873T p.R291S TCTCAGGGTCTTC . 125.0 11.0 51.0 0.0 . 55 . . Atlas-SNP GAA 2548 hgsc.bcm.edu hg19 17 78091993 78091993 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GAA NM_001079803 exon19 c.G2483T p.G828V TCCAGGGCCCTGG . 107.0 19.0 34.0 0.0 . 66 . . Atlas-SNP CCDC57 284001 hgsc.bcm.edu hg19 17 80115731 80115731 + Nonsense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CCDC57 NM_198082 exon14 c.C2134T p.Q712X CCACCTGCTTCCG . 80.0 6.0 21.0 0.0 . 102 . . Atlas-SNP LPIN2 9663 hgsc.bcm.edu hg19 18 2925247 2925247 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . LPIN2 NM_014646 exon14 c.C1913G p.S638C CGGAGAGACTTCT . 167.0 9.0 89.0 0.0 . 75 . . Atlas-SNP RAB31 11031 hgsc.bcm.edu hg19 18 9859227 9859227 + Missense_Mutation SNP C C A rs147665641 bycluster;by1000genomes;alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 RAB31,colon,carcinoma,0,1 RAB31 NM_006868 exon7 c.C493A p.R165S GCAGGCCGCCAGA . 141.0 24.0 54.0 0.0 . 23 . C|0.999;T|0.001 Atlas-SNP CEP76 79959 hgsc.bcm.edu hg19 18 12691398 12691398 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CEP76 NM_024899 exon7 c.G893T p.R298L GAGGGTCGAATTT . 127.0 10.0 65.0 0.0 . 45 . . Atlas-SNP CEP192 55125 hgsc.bcm.edu hg19 18 13056654 13056654 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CEP192 NM_032142 exon19 c.C4065T p.N1355N TACAAACTGTGGA . 111.0 46.0 69.0 0.0 . 340 . . Atlas-SNP ASXL3 80816 hgsc.bcm.edu hg19 18 31314285 31314285 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ASXL3 NM_030632 exon10 c.C988T p.P330S TTTACCCCAGAAA . 198.0 8.0 111.0 0.0 . 405 . . Atlas-SNP SYT4 6860 hgsc.bcm.edu hg19 18 40854035 40854035 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SYT4 NM_020783 exon2 c.A359T p.N120I GTTGCATTCTCCA . 188.0 8.0 85.0 0.0 . 162 . . Atlas-SNP RAB27B 5874 hgsc.bcm.edu hg19 18 52556472 52556472 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RAB27B NM_004163 exon6 c.C485A p.T162K TTGAAACAAGTGC . 108.0 7.0 40.0 0.0 . 24 . . Atlas-SNP VPS4B 9525 hgsc.bcm.edu hg19 18 61067824 61067824 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . VPS4B NM_004869 exon6 c.A597G p.I199M GGAAGATATTGAA . 238.0 16.0 87.0 0.0 . 33 . . Atlas-SNP CDH7 1005 hgsc.bcm.edu hg19 18 63430104 63430104 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CDH7 NM_004361 exon2 c.G26T p.C9F AGTTCTGCCATTT . 131.0 8.0 54.0 0.0 . 362 . . Atlas-SNP ABCA7 10347 hgsc.bcm.edu hg19 19 1051263 1051263 + Nonsense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ABCA7 NM_019112 exon20 c.A2794T p.K932X GTCTCCAAGCAGA . 120.0 15.0 36.0 0.0 . 174 . . Atlas-SNP DPP9 91039 hgsc.bcm.edu hg19 19 4682767 4682767 + Silent SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DPP9 NM_139159 exon20 c.C2415T p.N805N CTGGTTGTTCTCA . 119.0 13.0 56.0 0.0 . 59 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9002558 9002558 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MUC16 NM_024690 exon51 c.C40258A p.H13420N TGCCGTGGGTCAG . 210.0 26.0 91.0 0.0 . 4315 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9086899 9086899 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MUC16 NM_024690 exon1 c.G4916C p.S1639T CTACTACTGCTCC . 317.0 16.0 144.0 0.0 . 4315 . . Atlas-SNP OR7D4 125958 hgsc.bcm.edu hg19 19 9324856 9324856 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OR7D4 NM_001005191 exon1 c.C658A p.Q220K CAATCTGAGAGTA . 88.0 7.0 65.0 0.0 . 66 . . Atlas-SNP OR7D4 125958 hgsc.bcm.edu hg19 19 9324879 9324879 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 OR7D4,right_upper_lobe,carcinoma,0,1 OR7D4 NM_001005191 exon1 c.C635A p.A212D ATCCCAGCTACAG . 85.0 10.0 59.0 0.0 . 66 . . Atlas-SNP PIN1 5300 hgsc.bcm.edu hg19 19 9949168 9949168 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 PIN1_ENST00000247970,NS,carcinoma,0,1 PIN1 NM_006221 exon2 c.G115T p.G39C CCCAGCGGCAACA . 96.0 9.0 30.0 0.0 . 7 . . Atlas-SNP ZNF440 126070 hgsc.bcm.edu hg19 19 11942428 11942428 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZNF440 NM_152357 exon4 c.G437A p.C146Y GTAAGTGTCAACA . 203.0 76.0 96.0 0.0 . 56 . . Atlas-SNP ZNF91 7644 hgsc.bcm.edu hg19 19 23545393 23545393 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZNF91 NM_003430 exon4 c.G388T p.D130Y ACTCATCCACACT . 207.0 22.0 95.0 0.0 . 349 . . Atlas-SNP ANKRD27 84079 hgsc.bcm.edu hg19 19 33134347 33134347 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ANKRD27 NM_032139 exon7 c.A629T p.Q210L ACTGCCTGCTTCA . 118.0 63.0 52.0 0.0 . 86 . . Atlas-SNP RGS9BP 388531 hgsc.bcm.edu hg19 19 33167297 33167297 + Missense_Mutation SNP C C T rs371159333 TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RGS9BP NM_207391 exon1 c.C128T p.T43M AAAAGACGCGCCA . 18.0 6.0 8.0 0.0 . 9 . . Atlas-SNP KIAA0355 9710 hgsc.bcm.edu hg19 19 34791740 34791740 + Missense_Mutation SNP A A C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KIAA0355 NM_014686 exon2 c.A362C p.Q121P ATGTGCAGGAGCA . 128.0 15.0 48.0 0.0 . 105 . . Atlas-SNP SBSN 374897 hgsc.bcm.edu hg19 19 36019030 36019030 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SBSN NM_001166034 exon1 c.G154T p.D52Y TGCCATCCAGGGC . 205.0 44.0 81.0 0.0 . 58 . . Atlas-SNP ZNF527 84503 hgsc.bcm.edu hg19 19 37879212 37879212 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZNF527 NM_032453 exon5 c.G261T p.W87C AGACTGGGAGTCT . 284.0 23.0 70.0 0.0 . 78 . . Atlas-SNP WDR87 83889 hgsc.bcm.edu hg19 19 38378502 38378502 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . WDR87 NM_031951 exon6 c.G5692T p.E1898X CCTTTTCCTGTGT . 274.0 18.0 110.0 0.0 . 191 . . Atlas-SNP WDR87 83889 hgsc.bcm.edu hg19 19 38378503 38378503 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . WDR87 NM_031951 exon6 c.G5691C p.Q1897H CTTTTCCTGTGTC . 276.0 18.0 111.0 0.0 . 191 . . Atlas-SNP FCGBP 8857 hgsc.bcm.edu hg19 19 40366097 40366097 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FCGBP NM_003890 exon30 c.G14137A p.A4713T AGGTAGCCACTGC . 77.0 8.0 19.0 0.0 . 416 . . Atlas-SNP MAP3K10 4294 hgsc.bcm.edu hg19 19 40715117 40715117 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MAP3K10 NM_002446 exon6 c.G1543A p.A515T CTGAGGGCCATTC . 85.0 41.0 18.0 0.0 . 70 . . Atlas-SNP CEACAM3 1084 hgsc.bcm.edu hg19 19 42300660 42300660 + Silent SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CEACAM3 NM_001815 exon1 c.G51A p.G17G GCAGGGGCTTCTG . 65.0 29.0 50.0 0.0 . 37 . . Atlas-SNP PHLDB3 653583 hgsc.bcm.edu hg19 19 43983597 43983597 + Missense_Mutation SNP C C A rs200179651 bycluster;alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PHLDB3 NM_198850 exon14 c.G1634T p.R545L TTGATGCGGCCGC . 221.0 19.0 37.0 0.0 . 30 . . Atlas-SNP SYMPK 8189 hgsc.bcm.edu hg19 19 46321291 46321291 + Missense_Mutation SNP T T G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SYMPK NM_004819 exon23 c.A3007C p.I1003L ACTGGATGACGGT . 98.0 49.0 41.0 0.0 . 104 . . Atlas-SNP CCDC8 83987 hgsc.bcm.edu hg19 19 46914889 46914889 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CCDC8 NM_032040 exon1 c.G1179A p.A393A GGCCTCCGCCCTC . 131.0 9.0 105.0 0.0 . 56 . . Atlas-SNP KCNA7 3743 hgsc.bcm.edu hg19 19 49573841 49573841 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KCNA7 NM_031886 exon2 c.C850T p.R284C AGACACGCACCAA . 72.0 9.0 28.0 0.0 . 30 . . Atlas-SNP VRK3 51231 hgsc.bcm.edu hg19 19 50482384 50482384 + Silent SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . VRK3 NM_016440 exon14 c.A1392G p.P464P GTCATATGGAGAC . 103.0 33.0 46.0 0.0 . 49 . . Atlas-SNP KLK11 11012 hgsc.bcm.edu hg19 19 51530742 51530742 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KLK11 NM_144947 exon1 c.A32G p.K11R GATGACTTCCAGT . 83.0 11.0 32.0 0.0 . 28 . . Atlas-SNP SIGLEC12 89858 hgsc.bcm.edu hg19 19 52001391 52001391 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SIGLEC12 NM_053003 exon5 c.G1286T p.G429V AGCACCCCAAGGT . 104.0 9.0 41.0 0.0 . 243 . . Atlas-SNP ZNF613 79898 hgsc.bcm.edu hg19 19 52443518 52443518 + Silent SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZNF613 NM_001031721 exon4 c.C72G p.L24L GCAGCTCCTCGGC . 171.0 62.0 35.0 0.0 . 62 . . Atlas-SNP VN1R2 317701 hgsc.bcm.edu hg19 19 53761997 53761997 + Silent SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 VN1R2,NS,carcinoma,0,1 VN1R2 NM_173856 exon1 c.C369A p.S123S AAGATCCACAGAT . 130.0 61.0 72.0 0.0 . 71 . . Atlas-SNP OSCAR 126014 hgsc.bcm.edu hg19 19 54602893 54602893 + Splice_Site SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OSCAR NM_130771 exon4 c.71-1G>T . TGGCCACTAAGGG . 88.0 9.0 42.0 0.0 . 22 . . Atlas-SNP LILRA1 11024 hgsc.bcm.edu hg19 19 55111991 55111991 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . LILRA1 NM_006863 exon9 c.C1327A p.L443I AACACCCTCAGCC . 167.0 20.0 63.0 0.0 . 105 . . Atlas-SNP GP6 51206 hgsc.bcm.edu hg19 19 55543507 55543507 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 GP6,NS,carcinoma,0,1 GP6 NM_016363 exon3 c.G325A p.G109R CTTTACCCGTGGC . 43.0 2.0 10.0 0.0 . 55 . . Atlas-SNP PTPRH 5794 hgsc.bcm.edu hg19 19 55713470 55713470 + Silent SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 PTPRH,colon,carcinoma,0,1 PTPRH NM_002842 exon6 c.G1107A p.G369G ATTCTTCCCCACC . 204.0 22.0 96.0 1.0 . 139 . . Atlas-SNP PTPRH 5794 hgsc.bcm.edu hg19 19 55716907 55716907 + Missense_Mutation SNP C C A rs144055741 bycluster;alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PTPRH NM_002842 exon4 c.G406T p.A136S TCAGGGCGATGGA . 233.0 10.0 101.0 0.0 . 139 . C|1.000;T|0.000 Atlas-SNP ZNF264 9422 hgsc.bcm.edu hg19 19 57723567 57723567 + Nonsense_Mutation SNP G G T rs373693955 alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZNF264 NM_003417 exon4 c.G1102T p.E368X ACCGGGGAGAAGC . 181.0 24.0 73.0 0.0 . 65 . . Atlas-SNP ZNF543 125919 hgsc.bcm.edu hg19 19 57840472 57840472 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZNF543 NM_213598 exon4 c.T1642C p.S548P CGCGGCTCATCCC . 144.0 6.0 71.0 0.0 . 61 . . Atlas-SNP SIRPD 128646 hgsc.bcm.edu hg19 20 1532400 1532400 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SIRPD NM_178460 exon2 c.T358C p.F120L TTATGAACTTCAC . 161.0 20.0 59.0 0.0 . 34 . . Atlas-SNP ADRA1D 146 hgsc.bcm.edu hg19 20 4202228 4202228 + Missense_Mutation SNP G G T rs371559421 alternate_allele TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ADRA1D NM_000678 exon2 c.C1661A p.A554D CAGGTGGCGCCCT . 121.0 18.0 43.0 0.0 . 36 . . Atlas-SNP ADRA1D 146 hgsc.bcm.edu hg19 20 4202229 4202229 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ADRA1D NM_000678 exon2 c.G1660A p.A554T AGGTGGCGCCCTC . 119.0 19.0 43.0 0.0 . 36 . . Atlas-SNP PLCB4 5332 hgsc.bcm.edu hg19 20 9401994 9401994 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PLCB4 NM_001172646 exon26 c.G2205T p.E735D CGTAGAGGTGGAT . 153.0 14.0 60.0 0.0 . 204 . . Atlas-SNP KIF16B 55614 hgsc.bcm.edu hg19 20 16316592 16316592 + Silent SNP T T C rs370943548 TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KIF16B NM_024704 exon24 c.A3690G p.T1230T CTTCAATGTTTTA . 68.0 34.0 64.0 0.0 . 305 . . Atlas-SNP C20orf26 26074 hgsc.bcm.edu hg19 20 20056165 20056165 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . C20orf26 NM_015585 exon6 c.G472T p.G158W CAAGTGGGGAACA . 127.0 9.0 77.0 0.0 . 188 . . Atlas-SNP GZF1 64412 hgsc.bcm.edu hg19 20 23345190 23345190 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GZF1 NM_022482 exon1 c.G170A p.S57N CCACCAGCAAGTT . 112.0 15.0 57.0 0.0 . 61 . . Atlas-SNP BPIFA1 51297 hgsc.bcm.edu hg19 20 31825552 31825552 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_016583 exon2 c.G35A p.G12E TCTACGGGCTGTT . 88.0 34.0 63.0 0.0 . . . . Atlas-SNP TRPC4AP 26133 hgsc.bcm.edu hg19 20 33598060 33598060 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TRPC4AP NM_015638 exon12 c.C1441G p.L481V CATTCAGCTCCTG . 241.0 22.0 102.0 0.0 . 64 . . Atlas-SNP RALGAPB 57148 hgsc.bcm.edu hg19 20 37154091 37154091 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 RALGAPB,NS,carcinoma,0,1 RALGAPB NM_020336 exon12 c.G1832C p.R611P AATTGCGAAGATC . 380.0 16.0 140.0 0.0 . 134 . . Atlas-SNP ELMO2 63916 hgsc.bcm.edu hg19 20 45004003 45004003 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ELMO2 NM_182764 exon12 c.A937G p.R313G TGTCCCTTTGAGC . 172.0 15.0 71.0 0.0 . 51 . . Atlas-SNP ATP9A 10079 hgsc.bcm.edu hg19 20 50346419 50346419 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ATP9A NM_006045 exon2 c.A167T p.N56I ATGACATTCCGAG . 134.0 12.0 55.0 0.0 . 135 . . Atlas-SNP BMP7 655 hgsc.bcm.edu hg19 20 55840845 55840845 + Missense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . BMP7 NM_001719 exon1 c.A334T p.S112C GGGTACTGAAGAC . 112.0 16.0 52.0 0.0 . 60 . . Atlas-SNP STX16 8675 hgsc.bcm.edu hg19 20 57246217 57246217 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . STX16 NM_001001433 exon7 c.C656A p.T219K GTTTTACAGAGGA . 125.0 6.0 55.0 0.0 . 36 . . Atlas-SNP CDH26 60437 hgsc.bcm.edu hg19 20 58560154 58560154 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CDH26 NM_177980 exon7 c.C807A p.N269K AGGCAACAACCAC . 68.0 9.0 16.0 0.0 . 229 . . Atlas-SNP YTHDF1 54915 hgsc.bcm.edu hg19 20 61835099 61835099 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . YTHDF1 NM_017798 exon4 c.G193C p.G65R GAAATCCAATGGA . 84.0 26.0 32.0 0.0 . 66 . . Atlas-SNP NPBWR2 2832 hgsc.bcm.edu hg19 20 62737266 62737266 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NPBWR2 NM_005286 exon1 c.G919A p.A307T AGTTGGCGTAGCT . 89.0 11.0 31.0 0.0 . 36 . . Atlas-SNP KRTAP13-2 337959 hgsc.bcm.edu hg19 21 31744410 31744410 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KRTAP13-2 NM_181621 exon1 c.G122T p.C41F GGAGAGCAGAGGT . 158.0 10.0 73.0 0.0 . 29 . . Atlas-SNP KRTAP22-1 337979 hgsc.bcm.edu hg19 21 31973499 31973499 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . KRTAP22-1 NM_181620 exon1 c.C60A p.C20X GGGCTGCAGCTAT . 184.0 60.0 97.0 0.0 . 16 . . Atlas-SNP HUNK 30811 hgsc.bcm.edu hg19 21 33296847 33296847 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HUNK NM_014586 exon2 c.G329A p.R110Q TGCGGCGAGAGGG . 134.0 19.0 52.0 0.0 . 74 . . Atlas-SNP SON 6651 hgsc.bcm.edu hg19 21 34925206 34925206 + Silent SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SON NM_032195 exon3 c.T3669A p.P1223P GGAGCCTTCAGCA . 164.0 69.0 88.0 0.0 . 343 . . Atlas-SNP TTC3 7267 hgsc.bcm.edu hg19 21 38538901 38538901 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TTC3 NM_001001894 exon33 c.A4385G p.Q1462R ACGTGCAGATGGT . 228.0 22.0 85.0 0.0 . 182 . . Atlas-SNP RRP1B 23076 hgsc.bcm.edu hg19 21 45094517 45094517 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RRP1B NM_015056 exon5 c.C358A p.L120M CTTTAGCTGATTC . 144.0 9.0 54.0 0.0 . 51 . . Atlas-SNP KRTAP10-1 386677 hgsc.bcm.edu hg19 21 45959615 45959615 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 KRTAP10-1,NS,carcinoma,0,1 KRTAP10-1 NM_198691 exon1 c.C419A p.S140Y CAGCAGGACTGCT . 171.0 11.0 114.0 0.0 . 34 . . Atlas-SNP KRTAP10-1 386677 hgsc.bcm.edu hg19 21 45959819 45959819 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 KRTAP10-1,NS,carcinoma,0,1 KRTAP10-1 NM_198691 exon1 c.C215T p.T72I GAGCTGGTGCAGC . 40.0 3.0 48.0 0.0 . 34 . . Atlas-SNP SCARF2 91179 hgsc.bcm.edu hg19 22 20784723 20784723 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SCARF2 NM_182895 exon6 c.G1195A p.G399R GGGGCCCGTGGAC . 24.0 8.0 13.0 0.0 . 23 . . Atlas-SNP SEZ6L 23544 hgsc.bcm.edu hg19 22 26688528 26688528 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SEZ6L NM_001184777 exon2 c.T251C p.V84A AGCTGGTGCTGGA . 67.0 10.0 31.0 0.0 . 174 . . Atlas-SNP NF2 4771 hgsc.bcm.edu hg19 22 30069414 30069414 + Nonsense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NF2 NM_000268 exon12 c.G1279T p.E427X CTGATGGAGCAGA . 123.0 7.0 45.0 0.0 . 1312 . . Atlas-SNP PLA2G3 50487 hgsc.bcm.edu hg19 22 31533849 31533849 + Nonsense_Mutation SNP T T A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PLA2G3 NM_015715 exon4 c.A913T p.K305X GCTGCTTCTGTCG . 209.0 23.0 83.0 0.0 . 85 . . Atlas-SNP PLA2G3 50487 hgsc.bcm.edu hg19 22 31534717 31534717 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PLA2G3 NM_015715 exon2 c.C583A p.Q195K TGTACTGCAAGGG . 311.0 16.0 133.0 0.0 . 85 . . Atlas-SNP MCM5 4174 hgsc.bcm.edu hg19 22 35796490 35796490 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MCM5 NM_006739 exon2 c.A59G p.Q20R ACGCCCAGGCCGA . 140.0 8.0 61.0 0.0 . 54 . . Atlas-SNP TRIOBP 11078 hgsc.bcm.edu hg19 22 38120914 38120914 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TRIOBP NM_001039141 exon7 c.A2351G p.N784S CTCCCAATAGAGC . 161.0 15.0 90.0 0.0 . 262 . . Atlas-SNP EP300 2033 hgsc.bcm.edu hg19 22 41560092 41560092 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . EP300 NM_001429 exon22 c.A3764T p.H1255L AGATGCATCAGAT . 260.0 24.0 127.0 0.0 . 367 . . Atlas-SNP POLR3H 171568 hgsc.bcm.edu hg19 22 41928119 41928119 + Nonsense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . POLR3H NM_001018050 exon4 c.C338A p.S113X TGCAGTGACTCTG . 70.0 34.0 47.0 0.0 . 30 . . Atlas-SNP CRELD2 79174 hgsc.bcm.edu hg19 22 50316298 50316298 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CRELD2 NM_001135101 exon7 c.A778T p.N260Y CTGACCAACAGAG . 54.0 27.0 51.0 0.0 . 57 . . Atlas-SNP IL17REL 400935 hgsc.bcm.edu hg19 22 50439551 50439551 + Missense_Mutation SNP G G C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . IL17REL NM_001001694 exon4 c.C69G p.C23W CATCGCGCAGCCG . 160.0 17.0 46.0 0.0 . 21 . . Atlas-SNP TRABD 80305 hgsc.bcm.edu hg19 22 50636557 50636557 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TRABD NM_025204 exon9 c.C898G p.H300D ATGGGCCACGTGC . 83.0 27.0 41.0 0.0 . 21 . . Atlas-SNP SBF1 6305 hgsc.bcm.edu hg19 22 50898976 50898976 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SBF1 NM_002972 exon24 c.G3133A p.G1045S AAGGACCCTTGTC . 77.0 4.0 32.0 0.0 . 211 . . Atlas-SNP WWC3 55841 hgsc.bcm.edu hg19 X 10085259 10085259 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . WWC3 NM_015691 exon11 c.G1160A p.S387N CCCTGAGCTCGGT . 92.0 84.0 21.0 0.0 . 142 . . Atlas-SNP MAP3K15 389840 hgsc.bcm.edu hg19 X 19379516 19379516 + Silent SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MAP3K15 NM_001001671 exon28 c.T3798C p.Y1266Y AAGTGTATAACCC . 179.0 18.0 70.0 0.0 . 108 . . Atlas-SNP RPS6KA3 6197 hgsc.bcm.edu hg19 X 20252926 20252926 + Nonsense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RPS6KA3 NM_004586 exon2 c.C76T p.Q26X TTTGCTGTCCATT . 337.0 33.0 85.0 0.0 . 110 . . Atlas-SNP CNKSR2 22866 hgsc.bcm.edu hg19 X 21545015 21545015 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CNKSR2 NM_001168647 exon10 c.G988A p.V330I AGCAGCGTTGCCA . 200.0 39.0 54.0 0.0 . 158 . . Atlas-SNP ARAF 369 hgsc.bcm.edu hg19 X 47428285 47428285 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ARAF NM_001256196 exon11 c.G1254T p.Q418H TGCCCAGGGCATG . 203.0 28.0 38.0 0.0 . 67 . . Atlas-SNP AMER1 139285 hgsc.bcm.edu hg19 X 63410708 63410708 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_152424 exon2 c.G2459T p.G820V CACTTGCCTTCCC . 125.0 34.0 25.0 0.0 . . . . Atlas-SNP ASB12 142689 hgsc.bcm.edu hg19 X 63444957 63444957 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ASB12 NM_130388 exon2 c.G574T p.G192W GGTGCCCGTAGAC . 102.0 5.0 24.0 0.0 . 102 . . Atlas-SNP ASB12 142689 hgsc.bcm.edu hg19 X 63445128 63445128 + Missense_Mutation SNP T T C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ASB12 NM_130388 exon2 c.A403G p.S135G AGATGCTACCACC . 214.0 16.0 45.0 0.0 . 102 . . Atlas-SNP TAF1 6872 hgsc.bcm.edu hg19 X 70680629 70680629 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TAF1 NM_004606 exon37 c.A5435G p.H1812R CTTCCCATGGTTT . 177.0 36.0 68.0 0.0 . 439 . . Atlas-SNP CYLC1 1538 hgsc.bcm.edu hg19 X 83128877 83128877 + Missense_Mutation SNP G G T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CYLC1 NM_021118 exon4 c.G1161T p.L387F AAATTTGAAGAAA . 157.0 9.0 51.0 0.0 . 272 . . Atlas-SNP CHM 1121 hgsc.bcm.edu hg19 X 85218969 85218969 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CHM NM_000390 exon5 c.G403C p.D135H CAGAATCTGCAGC . 247.0 13.0 75.0 0.0 . 57 . . Atlas-SNP TGIF2LX 90316 hgsc.bcm.edu hg19 X 89177619 89177619 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TGIF2LX NM_138960 exon2 c.C535A p.P179T TCGGCCCCTAGCC . 339.0 57.0 53.0 0.0 . 84 . . Atlas-SNP TGIF2LX 90316 hgsc.bcm.edu hg19 X 89177620 89177620 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TGIF2LX NM_138960 exon2 c.C536G p.P179R CGGCCCCTAGCCA . 345.0 59.0 52.0 0.0 . 84 . . Atlas-SNP TGIF2LX 90316 hgsc.bcm.edu hg19 X 89177754 89177754 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TGIF2LX NM_138960 exon2 c.G670A p.A224T GATGCAGCAGTAC . 551.0 76.0 94.0 0.0 . 84 . . Atlas-SNP MORF4L2 9643 hgsc.bcm.edu hg19 X 102931737 102931737 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MORF4L2 NM_001142422 exon5 c.G219T p.R73S GGTCTTCCTCACG . 133.0 31.0 33.0 0.0 . 35 . . Atlas-SNP PLP1 5354 hgsc.bcm.edu hg19 X 103041518 103041518 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PLP1 NM_001128834 exon4 c.A316G p.T106A TACAAGACCACCA . 387.0 90.0 71.0 0.0 . 37 . . Atlas-SNP PLP1 5354 hgsc.bcm.edu hg19 X 103041636 103041636 + Nonsense_Mutation SNP G G A rs132630292 TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PLP1 NM_001128834 exon4 c.G434A p.W145X GAAAATGGCTAGG . 382.0 47.0 84.0 0.0 . 37 . . Atlas-SNP RBMXL3 139804 hgsc.bcm.edu hg19 X 114424168 114424168 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RBMXL3 NM_001145346 exon1 c.C164A p.T55N TCGTCACCTTCGA . 231.0 62.0 34.0 0.0 . 83 . . Atlas-SNP OCRL 4952 hgsc.bcm.edu hg19 X 128722192 128722192 + Missense_Mutation SNP C C T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . OCRL NM_000276 exon21 c.C2293T p.L765F GAAGAGCTCCAGC . 173.0 32.0 57.0 0.0 . 117 . . Atlas-SNP FRMD7 90167 hgsc.bcm.edu hg19 X 131212315 131212315 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FRMD7 NM_194277 exon12 c.C1730T p.A577V ACAAATGCATCTT . 242.0 26.0 60.0 0.0 . 69 . . Atlas-SNP GPR112 139378 hgsc.bcm.edu hg19 X 135453612 135453612 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GPR112 NM_153834 exon14 c.A7522G p.M2508V ATAAGTATGAACC . 302.0 26.0 83.0 0.0 . 459 . . Atlas-SNP MAGEC3 139081 hgsc.bcm.edu hg19 X 140985121 140985121 + Missense_Mutation SNP A A G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MAGEC3 NM_138702 exon7 c.A1577G p.E526G TCTTTGAAGACAC . 106.0 8.0 29.0 0.0 . 228 . . Atlas-SNP HMGB3 3149 hgsc.bcm.edu hg19 X 150155724 150155724 + Missense_Mutation SNP A A T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . HMGB3 NM_005342 exon4 c.A414T p.E138D CAGTGAAAAGCAG . 109.0 101.0 43.0 0.0 . 27 . . Atlas-SNP GABRQ 55879 hgsc.bcm.edu hg19 X 151821044 151821044 + Missense_Mutation SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GABRQ NM_018558 exon9 c.C1199A p.P400H CTCTCCCCATCAC . 293.0 19.0 63.0 0.0 . 131 . . Atlas-SNP PLXNB3 5365 hgsc.bcm.edu hg19 X 153035604 153035604 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PLXNB3 NM_001163257 exon9 c.G1756A p.A586T CATTGTGCGTTCG . 86.0 82.0 28.0 0.0 . 208 . . Atlas-SNP IDH3G 3421 hgsc.bcm.edu hg19 X 153055245 153055245 + Missense_Mutation SNP G G A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . IDH3G NM_004135 exon5 c.C268T p.H90Y TCACGTGCACCTC . 69.0 16.0 9.0 0.0 . 36 . . Atlas-SNP TGIF2LY 90655 hgsc.bcm.edu hg19 Y 3447819 3447819 + Silent SNP C C A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TGIF2LY NM_139214 exon2 c.C534A p.P178P TCGGCCCCTAGCC . 143.0 18.0 50.0 0.0 . 6 . . Atlas-SNP TGIF2LY 90655 hgsc.bcm.edu hg19 Y 3447820 3447820 + Missense_Mutation SNP C C G novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TGIF2LY NM_139214 exon2 c.C535G p.L179V CGGCCCCTAGCCA . 146.0 19.0 51.0 0.0 . 6 . . Atlas-SNP SLC30A10 55532 hgsc.bcm.edu hg19 1 220091827 220091827 + Frame_Shift_Del DEL A A - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SLC30A10 NM_018713 exon3 c.729delG p.L243fs . . 116.0 72.0 24.0 0.0 . 58 . . Atlas-Indel,Pindel SLC39A5 283375 hgsc.bcm.edu hg19 12 56628734 56628739 + In_Frame_Del DEL GCTCCG GCTCCG - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 GCTCCG GCTCCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SLC39A5 NM_173596 exon6 c.597_602del p.199_201del . . 55.0 23.0 16.0 0.0 . 52 . . Atlas-Indel,Pindel ELL2 22936 hgsc.bcm.edu hg19 5 95226963 95226963 + Frame_Shift_Del DEL G G - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ELL2 NM_012081 exon10 c.1606delG p.V536fs . . 82.0 11.0 49.0 0.0 . 63 . . Atlas-INDEL ALB 213 hgsc.bcm.edu hg19 4 74283297 74283298 + Frame_Shift_Ins INS - - T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ALB NM_000477 exon11 c.1339_1340insT p.L447fs . . 217.0 33.0 77.0 0.0 . 132 . . Atlas-Indel,Pindel COL20A1 57642 hgsc.bcm.edu hg19 20 61938948 61938948 + Frame_Shift_Del DEL C C - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . COL20A1 NM_020882 exon6 c.602delT p.F201fs . . 62.0 24.0 31.0 0.0 . 137 . . Atlas-Indel,Pindel PLCG1 5335 hgsc.bcm.edu hg19 20 39792450 39792451 + Frame_Shift_Ins INS - - T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PLCG1 NM_182811 exon10 c.987_988insT p.Y329fs . . 187.0 22.0 63.0 0.0 . 111 . . Atlas-Indel,Pindel MGA 23269 hgsc.bcm.edu hg19 15 42028515 42028522 + Frame_Shift_Del DEL TTTGAGCA TTTGAGCA - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 TTTGAGCA TTTGAGCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MGA NM_001080541 exon13 c.4052_4059del p.1351_1353del . . 129.0 39.0 87.0 0.0 . 264 . . Atlas-Indel,Pindel SUV39H2 79723 hgsc.bcm.edu hg19 10 14939003 14939003 + Frame_Shift_Del DEL A A - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SUV39H2 NM_001193424 exon3 c.335delC p.P112fs . . 64.0 15.0 33.0 0.0 . 72 . . Atlas-Indel,Pindel CCDC43 124808 hgsc.bcm.edu hg19 17 42756390 42756391 + Frame_Shift_Ins INS - - GT novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CCDC43 NM_144609 exon5 c.509_510insAC p.V170fs . . 196.0 30.0 97.0 0.0 . 34 . . Atlas-INDEL RB1 5925 hgsc.bcm.edu hg19 13 48947605 48947606 + Frame_Shift_Ins INS - - A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 .,1 RB1 NM_000321 exon12 c.1192_1193insA p.E398fs . . 609.0 110.0 146.0 0.0 . 1068 . . Atlas-Indel,Pindel ALB 213 hgsc.bcm.edu hg19 4 74274521 74274524 + In_Frame_Del DEL AAGT AAGT - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 AAGT AAGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ALB NM_000477 exon4 c.480_482del p.160_161del . . 86.0 32.0 55.0 0.0 . 132 . . Atlas-Indel,Pindel NBEA 26960 hgsc.bcm.edu hg19 13 36229035 36229036 + Frame_Shift_Ins INS - - C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NBEA NM_015678 exon53 c.8016_8017insC p.V2672fs . . 112.0 22.0 59.0 0.0 . 340 . . Atlas-Indel,Pindel GALNT4 8693 hgsc.bcm.edu hg19 12 89916661 89916662 + Frame_Shift_Ins INS - - A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GALNT4 NM_003774 exon1 c.1666_1667insT p.G556fs . . 196.0 26.0 113.0 0.0 . 38 . . Atlas-INDEL MED24 9862 hgsc.bcm.edu hg19 17 38179422 38179422 + Frame_Shift_Del DEL T T - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . MED24 NM_014815 exon20 c.2213delT p.M738fs . . 97.0 22.0 26.0 0.0 . 89 . . Atlas-INDEL ARID1A 8289 hgsc.bcm.edu hg19 1 27087894 27087898 + Frame_Shift_Del DEL GCCAC GCCAC - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 GCCAC GCCAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 .,1 ARID1A NM_139135 exon6 c.2180_2184del p.727_728del . . 280.0 26.0 119.0 0.0 . 842 . . Atlas-Indel,Pindel SLC5A1 6523 hgsc.bcm.edu hg19 22 32480424 32480440 + Frame_Shift_Del DEL TCCAGCTTTTCACGAAG TCCAGCTTTTCACGAAG - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 TCCAGCTTTTCACGAAG TCCAGCTTTTCACGAAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SLC5A1 NM_000343 exon8 c.665_675del p.222_225del . . 95.0 22.0 41.0 0.0 . 80 . . Atlas-Indel,Pindel NOTCH2 4853 hgsc.bcm.edu hg19 1 120461966 120461966 + Frame_Shift_Del DEL G G - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . NOTCH2 NM_024408 exon31 c.5751delA p.A1917fs . . 65.0 17.0 29.0 0.0 . 348 . . Atlas-INDEL DNAH7 56171 hgsc.bcm.edu hg19 2 196825220 196825220 + Frame_Shift_Del DEL T T - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . DNAH7 NM_018897 exon18 c.2656delG p.D886fs . . 216.0 17.0 75.0 0.0 . 512 . . Atlas-INDEL ALDH1L2 160428 hgsc.bcm.edu hg19 12 105431912 105431919 + Frame_Shift_Del DEL TTAAATAT TTAAATAT - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 TTAAATAT TTAAATAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ALDH1L2 NM_001034173 exon18 c.2108_2115del p.703_705del . . 105.0 34.0 56.0 0.0 . 71 . . Atlas-Indel,Pindel TCHHL1 126637 hgsc.bcm.edu hg19 1 152057483 152057486 + Frame_Shift_Del DEL CTCT CTCT - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 CTCT CTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . TCHHL1 NM_001008536 exon3 c.2673_2676del p.891_892del . . 402.0 76.0 108.0 0.0 . 132 . . Atlas-Indel,Pindel CEP170 9859 hgsc.bcm.edu hg19 1 243327863 243327876 + Frame_Shift_Del DEL AGAACTTGTTGTGG AGAACTTGTTGTGG - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 AGAACTTGTTGTGG AGAACTTGTTGTGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . CEP170 NM_014812 exon13 c.3387_3400del p.1129_1134del . . 655.0 44.0 151.0 0.0 . 153 . . Atlas-Indel,Pindel RXRB 6257 hgsc.bcm.edu hg19 6 33166198 33166198 + Frame_Shift_Del DEL G G - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RXRB NM_001270401 exon3 c.528delT p.P176fs . . 112.0 10.0 25.0 0.0 . 34 . . Atlas-INDEL PCDH15 65217 hgsc.bcm.edu hg19 10 56106175 56106177 + In_Frame_Del DEL CAT CAT - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 CAT CAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . PCDH15 NM_001142763 exon7 c.558_560del p.186_187del . . 166.0 13.0 65.0 0.0 . 1715 . . Atlas-Indel,Pindel POTEM 641455 hgsc.bcm.edu hg19 14 20000537 20000537 + Frame_Shift_Del DEL C C - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . POTEM NM_001145442 exon8 c.1199delA p.E400fs . . 1473.0 239.0 197.0 0.0 . 51 . . Atlas-Indel,Pindel IFT81 28981 hgsc.bcm.edu hg19 12 110581329 110581331 + In_Frame_Del DEL TCT TCT - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 TCT TCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . IFT81 NM_014055 exon9 c.923_925del p.308_309del . . 142.0 45.0 85.0 0.0 . 86 . . Atlas-Indel,Pindel ANKRD1 27063 hgsc.bcm.edu hg19 10 92679010 92679011 + Frame_Shift_Ins INS - - T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 ANKRD1,NS,carcinoma,0,1 ANKRD1 NM_014391 exon3 c.223_224insA p.L75fs . . 66.0 11.0 71.0 0.0 . 50 . . Atlas-INDEL C8A 731 hgsc.bcm.edu hg19 1 57349332 57349339 + Frame_Shift_Del DEL AATTAAAC AATTAAAC - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 AATTAAAC AATTAAAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 C8A,NS,malignant_melanoma,0,3 C8A NM_000562 exon6 c.832_839del p.278_280del . . 63.0 16.0 32.0 0.0 . 103 . . Atlas-Indel,Pindel NFE2L2 4780 hgsc.bcm.edu hg19 2 178098961 178098963 + In_Frame_Del DEL TAT TAT - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 TAT TAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 NFE2L2,bladder,carcinoma,0,18 NFE2L2 NM_006164 exon2 c.83_85del p.28_29del . . 92.0 30.0 78.0 0.0 . 225 . . Atlas-Indel,Pindel ZNF264 9422 hgsc.bcm.edu hg19 19 57723451 57723453 + In_Frame_Del DEL GCT GCT - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 GCT GCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZNF264 NM_003417 exon4 c.985_987del p.329_329del . . 85.0 16.0 40.0 0.0 . 65 . . Atlas-INDEL GABRA2 2555 hgsc.bcm.edu hg19 4 46390679 46390679 + Frame_Shift_Del DEL A A - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . GABRA2 NM_001114175 exon1 c.46delG p.V16fs . . 499.0 38.0 143.0 0.0 . 134 . . Atlas-Indel,Pindel ZNF267 10308 hgsc.bcm.edu hg19 16 31927200 31927200 + Frame_Shift_Del DEL G G - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . ZNF267 NM_003414 exon4 c.1629delT p.T543fs . . 65.0 10.0 24.0 0.0 . 94 . . Atlas-INDEL SLC52A2 79581 hgsc.bcm.edu hg19 8 145584640 145584640 + Frame_Shift_Del DEL A A - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . NM_024531 exon5 c.1302delC p.H434fs . . 131.0 32.0 50.0 0.0 . . . . Atlas-Indel,Pindel AGBL3 340351 hgsc.bcm.edu hg19 7 134717658 134717659 + Frame_Shift_Ins INS - - T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . AGBL3 NM_178563 exon6 c.482_483insT p.P161fs . . 200.0 17.0 68.0 0.0 . 45 . . Atlas-INDEL APOB 338 hgsc.bcm.edu hg19 2 21230944 21230945 + Frame_Shift_Ins INS - - T novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . APOB NM_000384 exon26 c.8796_8797insA p.A2932fs . . 298.0 27.0 135.0 0.0 . 761 . . Atlas-INDEL POTEH 23784 hgsc.bcm.edu hg19 22 16268181 16268181 + Frame_Shift_Del DEL C C - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . POTEH NM_001136213 exon8 c.1310delA p.E437fs . . 1508.0 229.0 195.0 0.0 . 114 . . Atlas-Indel,Pindel FCHO2 115548 hgsc.bcm.edu hg19 5 72348291 72348292 + Frame_Shift_Ins INS - - A novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . FCHO2 NM_138782 exon13 c.1130_1131insA p.L377fs . . 315.0 101.0 100.0 0.0 . 96 . . Atlas-Indel,Pindel RPS6KL1 83694 hgsc.bcm.edu hg19 14 75376302 75376303 + Frame_Shift_Ins INS - - C novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . RPS6KL1 NM_031464 exon7 c.1214_1215insG p.E405fs . . 158.0 21.0 32.0 0.0 . 35 . . Atlas-Indel,Pindel SPHK1 8877 hgsc.bcm.edu hg19 17 74383108 74383109 + Frame_Shift_Del DEL GT GT - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 GT GT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . SPHK1 NM_182965 exon6 c.853_854del p.285_285del . . 80.0 20.0 44.0 0.0 . 24 . . Pindel NAPRT1 93100 hgsc.bcm.edu hg19 8 144657868 144657904 + In_Frame_Del DEL CTGCCCTGGGTGGGGAAGGGGGTGGCCGTGAGCCCAG CTGCCCTGGGTGGGGAAGGGGGTGGCCGTGAGCCCAG - novel TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 CTGCCCTGGGTGGGGAAGGGGGTGGCCGTGAGCCCAG CTGCCCTGGGTGGGGAAGGGGGTGGCCGTGAGCCCAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 NAPRT1_ENST00000449291,caecum,carcinoma,0,2 NAPRT1 NM_145201 exon9 c.1108_1113del p.370_371del . . 128.0 23.0 15.0 0.0 . 47 . . Pindel MIR550A2 693134 hgsc.bcm.edu hg19 7 32772637 32772639 + RNA DEL TGT TGT - rs113464681 TCGA-DD-A1EE-01A-11D-A12Z-10 TCGA-DD-A1EE-10A-01D-A12Z-10 TGT TGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 65ed0706-a804-4744-a5fb-b473edf78c63 1d47f982-8d2a-4164-bf7a-ed6962fc2b13 . . . . . . . . 187.0 11.0 105.0 0.0 . . . TGT|0.500;-|0.500 Pindel