Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm LRRC47 57470 hgsc.bcm.edu hg19 1 3703707 3703707 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . LRRC47 NM_020710 exon2 c.A783G p.G261G ACGGCCTCCGACG . 70.0 4.0 192.0 0.0 . 42 . . Atlas-SNP PRAMEF4 400735 hgsc.bcm.edu hg19 1 12942173 12942173 + Missense_Mutation SNP C C G rs71232900 TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc PRAMEF4,NS,carcinoma,0,1 PRAMEF4 NM_001009611 exon3 c.G377C p.C126S AGGAAGCACCCAT . 20.0 4.0 38.0 1.0 . 62 . C|0.500;G|0.500 Atlas-SNP DDOST 1650 hgsc.bcm.edu hg19 1 20982026 20982026 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DDOST NM_005216 exon5 c.A509G p.H170R AGCGTATGCTGCA . 92.0 4.0 135.0 0.0 . 30 . . Atlas-SNP AIM1L 55057 hgsc.bcm.edu hg19 1 26663170 26663170 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . AIM1L NM_001039775 exon12 c.A3965G p.K1322R ACGCCCTTCTCCA . 70.0 4.0 141.0 0.0 . 98 . . Atlas-SNP RPA2 6118 hgsc.bcm.edu hg19 1 28233497 28233497 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RPA2 NM_002946 exon4 c.A275G p.Y92C ATTTTGTAAACAA . 69.0 4.0 127.0 0.0 . 34 . . Atlas-SNP DLGAP3 58512 hgsc.bcm.edu hg19 1 35334624 35334624 + Silent SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DLGAP3 NM_001080418 exon7 c.C2067T p.G689G TGCCAGGCCCTCC . 64.0 25.0 96.0 0.0 . 107 . . Atlas-SNP OSCP1 127700 hgsc.bcm.edu hg19 1 36889022 36889022 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . OSCP1 NM_145047 exon5 c.T562C p.F188L ACACAAAGCGACC . 57.0 5.0 91.0 0.0 . 48 . . Atlas-SNP RLF 6018 hgsc.bcm.edu hg19 1 40656478 40656478 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RLF NM_012421 exon3 c.A427G p.S143G TCTGAAAGTGAAC . 91.0 4.0 155.0 0.0 . 152 . . Atlas-SNP RLF 6018 hgsc.bcm.edu hg19 1 40705106 40705106 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RLF NM_012421 exon8 c.A4732G p.S1578G ATGAGTAGTGCCT . 42.0 13.0 110.0 0.0 . 152 . . Atlas-SNP ZFP69 339559 hgsc.bcm.edu hg19 1 40961639 40961639 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . . NM_198494 exon6 c.T1489C p.C497R TACGAATGTAACG . 90.0 7.0 105.0 0.0 . . . . Atlas-SNP WDR65 149465 hgsc.bcm.edu hg19 1 43652435 43652435 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . WDR65 NM_152498 exon6 c.T1027C p.C343R GTTCTCTGCCTGT . 86.0 4.0 145.0 0.0 . 76 . . Atlas-SNP ATPAF1 64756 hgsc.bcm.edu hg19 1 47118264 47118264 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ATPAF1 NM_001042546 exon6 c.T646C p.S216P GACAGGACTGAGC . 81.0 4.0 148.0 0.0 . 19 . . Atlas-SNP ZFYVE9 9372 hgsc.bcm.edu hg19 1 52705075 52705075 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZFYVE9 NM_007323 exon4 c.T1986C p.L662L ATGCCTTGCATTA . 90.0 4.0 137.0 0.0 . 131 . . Atlas-SNP MRPL37 51253 hgsc.bcm.edu hg19 1 54681856 54681856 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc MRPL37,caecum,carcinoma,0,1 MRPL37 NM_016491 exon6 c.G1033A p.V345M CAGAGCGTGGGCA . 170.0 7.0 361.0 0.0 . 36 . . Atlas-SNP CTH 1491 hgsc.bcm.edu hg19 1 70881689 70881689 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CTH NM_153742 exon2 c.A219G p.K73K TGAAAAAGCAGTG . 71.0 4.0 115.0 0.0 . 48 . . Atlas-SNP LRRC8C 84230 hgsc.bcm.edu hg19 1 90180439 90180439 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . LRRC8C NM_032270 exon3 c.A2310G p.E770E TCCTGAACTGGGT . 89.0 4.0 118.0 0.0 . 73 . . Atlas-SNP ABCA4 24 hgsc.bcm.edu hg19 1 94497407 94497407 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ABCA4 NM_000350 exon27 c.T4055C p.L1352P TGCTGGAGGACCA . 128.0 7.0 180.0 0.0 . 275 . . Atlas-SNP ABCA4 24 hgsc.bcm.edu hg19 1 94502755 94502755 + Silent SNP C C A rs147884766 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc ABCA4,left_upper_lobe,carcinoma,0,1 ABCA4 NM_000350 exon25 c.G3759T p.T1253T AGCCAGCGTCTCC . 75.0 35.0 132.0 0.0 . 275 . C|0.998;T|0.002 Atlas-SNP C1orf56 54964 hgsc.bcm.edu hg19 1 151020559 151020559 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . C1orf56 NM_017860 exon1 c.G236A p.G79E TGGCTGGACCAGC . 97.0 4.0 155.0 0.0 . 25 . . Atlas-SNP SELENBP1 8991 hgsc.bcm.edu hg19 1 151337178 151337178 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SELENBP1 NM_001258289 exon12 c.A1386G p.E462E AGAGCCTTCCCTG . 90.0 4.0 100.0 0.0 . 44 . . Atlas-SNP CD1E 913 hgsc.bcm.edu hg19 1 158325760 158325760 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc CD1E,NS,carcinoma,-1,1 CD1E NM_001042584 exon4 c.G769A p.G257R CAGCGAGGGGACG . 251.0 67.0 342.0 1.0 . 129 . . Atlas-SNP SLAMF7 57823 hgsc.bcm.edu hg19 1 160719673 160719673 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SLAMF7 NM_021181 exon3 c.A439G p.T147A TGTGTGACCAATC . 95.0 4.0 156.0 0.0 . 54 . . Atlas-SNP RGS4 5999 hgsc.bcm.edu hg19 1 163042190 163042190 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RGS4 NM_001102445 exon3 c.A341G p.K114R GTGCAAAAGATAT . 71.0 20.0 93.0 0.0 . 97 . . Atlas-SNP AXDND1 126859 hgsc.bcm.edu hg19 1 179504037 179504037 + Missense_Mutation SNP G G C rs6425573 bycluster;by2hit2allele;byhapmap TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . AXDND1 NM_144696 exon25 c.G2971C p.E991Q GAAGAAGAACAAC . 230.0 33.0 240.0 0.0 . 142 . G|1.000;|0.000 Atlas-SNP PRG4 10216 hgsc.bcm.edu hg19 1 186275693 186275693 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PRG4 NM_005807 exon7 c.A842G p.E281G ATAAAGAGACAAC . 86.0 5.0 112.0 0.0 . 259 . . Atlas-SNP C1orf27 54953 hgsc.bcm.edu hg19 1 186352261 186352261 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . C1orf27 NM_001164245 exon3 c.A207G p.E69E GGATGAAGAATGG . 94.0 5.0 112.0 0.0 . 41 . . Atlas-SNP GUK1 2987 hgsc.bcm.edu hg19 1 228333287 228333287 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . GUK1 NM_001242840 exon2 c.T137C p.L46P GGCTGCTCCAGGA . 113.0 5.0 98.0 0.0 . 34 . . Atlas-SNP GREB1 9687 hgsc.bcm.edu hg19 2 11725969 11725969 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . GREB1 NM_148903 exon9 c.A1097G p.E366G CTGGAGAACCAGT . 120.0 5.0 218.0 0.0 . 308 . . Atlas-SNP CCDC164 92749 hgsc.bcm.edu hg19 2 26644239 26644239 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CCDC164 NM_145038 exon3 c.A327G p.R109R CAGGAGAGTCGAA . 95.0 4.0 136.0 0.0 . 84 . . Atlas-SNP SLC30A3 7781 hgsc.bcm.edu hg19 2 27481800 27481800 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SLC30A3 NM_003459 exon2 c.T98C p.L33P GTGAAGAGACTGA . 91.0 4.0 134.0 0.0 . 39 . . Atlas-SNP CLIP4 79745 hgsc.bcm.edu hg19 2 29344378 29344378 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CLIP4 NM_024692 exon2 c.T124C p.S42P ATGCCTTCAGACT . 99.0 4.0 145.0 0.0 . 69 . . Atlas-SNP XDH 7498 hgsc.bcm.edu hg19 2 31620567 31620567 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . XDH NM_000379 exon6 c.A462G p.R154R GATGGGTCTGTAG . 90.0 4.0 156.0 0.0 . 191 . . Atlas-SNP NLRC4 58484 hgsc.bcm.edu hg19 2 32449645 32449645 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NLRC4 NM_001199138 exon9 c.T2972C p.L991S TTGGATAACACTT . 75.0 4.0 135.0 0.0 . 165 . . Atlas-SNP PPM1B 5495 hgsc.bcm.edu hg19 2 44436409 44436409 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PPM1B NM_001033556 exon3 c.G907A p.D303N GTCTCAGATGAAG . 25.0 4.0 54.0 0.0 . 97 . . Atlas-SNP STON1-GTF2A1L 286749 hgsc.bcm.edu hg19 2 48872210 48872210 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . STON1-GTF2A1L NM_001198593 exon7 c.T2454C p.G818G TCCTGGTTATCCC . 78.0 4.0 146.0 0.0 . 180 . . Atlas-SNP PSME4 23198 hgsc.bcm.edu hg19 2 54152693 54152693 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PSME4 NM_014614 exon14 c.T1792C p.S598P CTTTGGAACATTG . 123.0 5.0 226.0 0.0 . 247 . . Atlas-SNP PSME4 23198 hgsc.bcm.edu hg19 2 54159837 54159837 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PSME4 NM_014614 exon9 c.T1018C p.F340L GGTAAAAAGATGT . 79.0 4.0 145.0 0.0 . 247 . . Atlas-SNP PNPT1 87178 hgsc.bcm.edu hg19 2 55906857 55906857 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PNPT1 NM_033109 exon8 c.T639C p.T213T ATTTAAAGTACTA . 59.0 4.0 144.0 0.0 . 68 . . Atlas-SNP PUS10 150962 hgsc.bcm.edu hg19 2 61175205 61175205 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PUS10 NM_144709 exon16 c.G1424A p.R475H TGGAGGCGGAAGT . 109.0 5.0 208.0 0.0 . 49 . . Atlas-SNP ZNF638 27332 hgsc.bcm.edu hg19 2 71592804 71592804 + Missense_Mutation SNP G G T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZNF638 NM_014497 exon6 c.G1963T p.V655L AAACAGGTGTCTG . 118.0 47.0 198.0 0.0 . 179 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73716837 73716837 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ALMS1 NM_015120 exon10 c.A7748G p.K2583R ATGAAAAGGGATG . 50.0 22.0 118.0 0.0 . 384 . . Atlas-SNP WDR33 55339 hgsc.bcm.edu hg19 2 128480841 128480841 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . WDR33 NM_018383 exon12 c.A1277G p.D426G ACTCCATCTTCAG . 85.0 4.0 107.0 0.0 . 136 . . Atlas-SNP KYNU 8942 hgsc.bcm.edu hg19 2 143799616 143799616 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . KYNU NM_001199241 exon15 c.T1273C p.C425R CCACAGTGTGACA . 71.0 4.0 158.0 0.0 . 110 . . Atlas-SNP NEB 4703 hgsc.bcm.edu hg19 2 152392260 152392260 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NEB NM_001271208 exon142 c.T21257C p.V7086A TCGGCAACATACT . 90.0 4.0 123.0 0.0 . 1697 . . Atlas-SNP NEB 4703 hgsc.bcm.edu hg19 2 152534626 152534626 + Silent SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NEB NM_004543 exon33 c.C3331T p.L1111L GAACCAGTTTAGG . 227.0 94.0 382.0 1.0 . 1697 . . Atlas-SNP CACNB4 785 hgsc.bcm.edu hg19 2 152732942 152732942 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CACNB4 NM_001145798 exon5 c.A519G p.G173G GTACCCTCCGTGA . 100.0 5.0 124.0 0.0 . 108 . . Atlas-SNP FMNL2 114793 hgsc.bcm.edu hg19 2 153435453 153435453 + Missense_Mutation SNP C C G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . FMNL2 NM_052905 exon8 c.C757G p.L253V ATTGCACTAAGCC . 50.0 19.0 116.0 0.0 . 75 . . Atlas-SNP FMNL2 114793 hgsc.bcm.edu hg19 2 153486415 153486415 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . FMNL2 NM_052905 exon20 c.A2546G p.D849G GTTTAGATCTGGT . 87.0 4.0 141.0 0.0 . 75 . . Atlas-SNP MARCH7 64844 hgsc.bcm.edu hg19 2 160615791 160615791 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MARCH7 NM_022826 exon7 c.T1838C p.L613P TGGAGCTTAACCT . 87.0 4.0 158.0 0.0 . 48 . . Atlas-SNP SCN3A 6328 hgsc.bcm.edu hg19 2 166019086 166019086 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SCN3A NM_001081676 exon8 c.A947G p.K316R TAATCCTTCCAGT . 76.0 4.0 138.0 0.0 . 544 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168099632 168099632 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . XIRP2 NM_152381 exon9 c.T1730C p.I577T AGTCCATTAGATG . 89.0 5.0 191.0 0.0 . 914 . . Atlas-SNP LRP2 4036 hgsc.bcm.edu hg19 2 170103365 170103365 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . LRP2 NM_004525 exon21 c.G3040A p.E1014K CCCCCTCGCATGT . 149.0 51.0 259.0 0.0 . 751 . . Atlas-SNP KLHL23 151230 hgsc.bcm.edu hg19 2 170598012 170598012 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . KLHL23 NM_144711 exon3 c.A1331G p.N444S ATATCAACGAATG . 99.0 4.0 189.0 0.0 . 52 . . Atlas-SNP RAPGEF4 11069 hgsc.bcm.edu hg19 2 173852991 173852991 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RAPGEF4 NM_007023 exon13 c.T1218C p.I406I AGTCATTTACGGC . 57.0 4.0 74.0 0.0 . 103 . . Atlas-SNP AGPS 8540 hgsc.bcm.edu hg19 2 178310274 178310274 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . AGPS NM_003659 exon8 c.A790G p.N264D CAACAGAATCGAA . 79.0 4.0 144.0 0.0 . 56 . . Atlas-SNP OSBPL6 114880 hgsc.bcm.edu hg19 2 179247841 179247841 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . OSBPL6 NM_001201480 exon18 c.T1787C p.L596P TTAACCTGTGGAA . 74.0 4.0 169.0 0.0 . 178 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179434805 179434805 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc TTN_ENST00000359218,right_upper_lobe,carcinoma,0,5 TTN NM_001267550 exon326 c.A76054G p.T25352A ATCTTGTCCATCT . 71.0 3.0 107.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179640606 179640606 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TTN NM_001267550 exon28 c.A5985G p.E1995E CAGCTCTTCCGAC . 97.0 4.0 225.0 0.0 . 18412 . . Atlas-SNP C2orf88 84281 hgsc.bcm.edu hg19 2 191064868 191064868 + Silent SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . C2orf88 NM_001042519 exon2 c.G282A p.G94G TGAGGGGCCTTGA . 135.0 23.0 233.0 0.0 . 7 . . Atlas-SNP HECW2 57520 hgsc.bcm.edu hg19 2 197092980 197092980 + Splice_Site SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . HECW2 NM_020760 exon23 c.3765-2A>G . CCAGCCTGTAACA . 87.0 4.0 148.0 0.0 . 239 . . Atlas-SNP CCDC150 284992 hgsc.bcm.edu hg19 2 197539019 197539019 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CCDC150 NM_001080539 exon10 c.A1084G p.T362A CTTCAGACTGTTA . 77.0 4.0 98.0 0.0 . 96 . . Atlas-SNP GTF3C3 9330 hgsc.bcm.edu hg19 2 197654717 197654717 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . GTF3C3 NM_001206774 exon5 c.T613C p.F205L ACTCAAACTGCAA . 84.0 4.0 156.0 0.0 . 96 . . Atlas-SNP PLCL1 5334 hgsc.bcm.edu hg19 2 198948734 198948734 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc PLCL1_ENST00000428675,NS,carcinoma,0,3 PLCL1 NM_006226 exon2 c.G493A p.E165K ATAAAAGAGATCA . 69.0 3.0 124.0 0.0 . 358 . . Atlas-SNP SPATS2L 26010 hgsc.bcm.edu hg19 2 201334662 201334662 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SPATS2L NM_001100423 exon11 c.A983G p.D328G AATATGACGAGGA . 125.0 6.0 174.0 0.0 . 88 . . Atlas-SNP KCTD18 130535 hgsc.bcm.edu hg19 2 201369657 201369657 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . KCTD18 NM_152387 exon3 c.A186G p.G62G TAGACGTCCATCA . 85.0 6.0 167.0 0.0 . 44 . . Atlas-SNP ADAM23 8745 hgsc.bcm.edu hg19 2 207414830 207414830 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ADAM23 NM_003812 exon9 c.T879C p.G293G ACGTGGTATATTT . 92.0 4.0 160.0 0.0 . 239 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210837964 210837964 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . UNC80 NM_032504 exon55 c.G8359A p.A2787T GGGCTGGCTGAGT . 106.0 42.0 199.0 0.0 . 280 . . Atlas-SNP MARCH4 57574 hgsc.bcm.edu hg19 2 217124210 217124210 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MARCH4 NM_020814 exon4 c.G1058A p.G353D GGGGTGCCTGCGG . 101.0 34.0 166.0 0.0 . 50 . . Atlas-SNP DNER 92737 hgsc.bcm.edu hg19 2 230272034 230272034 + Missense_Mutation SNP G G T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DNER NM_139072 exon10 c.C1637A p.P546H GCGCAGGGATCCT . 44.0 4.0 84.0 0.0 . 129 . . Atlas-SNP CHRND 1144 hgsc.bcm.edu hg19 2 233400022 233400022 + Missense_Mutation SNP G G T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CHRND NM_000751 exon12 c.G1554T p.X518Y CATCTAGGGTGGG . 60.0 4.0 62.0 0.0 . 67 . . Atlas-SNP HJURP 55355 hgsc.bcm.edu hg19 2 234756059 234756059 + Missense_Mutation SNP A A G rs200818956 bycluster;by1000genomes;alternate_allele TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . HJURP NM_018410 exon5 c.T386C p.V129A CAAGCAACTGACT . 87.0 4.0 211.0 0.0 . 72 . A|0.999;C|0.001 Atlas-SNP HDLBP 3069 hgsc.bcm.edu hg19 2 242194881 242194881 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . HDLBP NM_005336 exon8 c.G988A p.E330K GGATCTCAACGGA . 82.0 4.0 265.0 0.0 . 118 . . Atlas-SNP EDEM1 9695 hgsc.bcm.edu hg19 3 5252876 5252876 + Missense_Mutation SNP G G C rs148682616 bycluster;by1000genomes;alternate_allele TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . EDEM1 NM_014674 exon10 c.G1655C p.S552T TTCTCAGTGAGAC . 73.0 31.0 151.0 0.0 . 45 . G|1.000;A|0.000 Atlas-SNP ATG7 10533 hgsc.bcm.edu hg19 3 11354826 11354826 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ATG7 NM_001136031 exon6 c.T460C p.C154R GCCCTCTGTCTTC . 93.0 4.0 123.0 0.0 . 56 . . Atlas-SNP EFHB 151651 hgsc.bcm.edu hg19 3 19921261 19921261 + Silent SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . EFHB NM_144715 exon13 c.G2364A p.L788L ATCAGACAGTTTG . 61.0 5.0 132.0 0.0 . 186 . . Atlas-SNP ZNF385D 79750 hgsc.bcm.edu hg19 3 21606170 21606170 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc ZNF385D,NS,carcinoma,0,1 ZNF385D NM_024697 exon3 c.C172T p.P58S GAATCGGGTCCAT . 43.0 4.0 82.0 0.0 . 93 . . Atlas-SNP LRRFIP2 9209 hgsc.bcm.edu hg19 3 37151023 37151023 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . LRRFIP2 NM_006309 exon12 c.A604G p.S202G CCAGACTGGCACT . 90.0 4.0 139.0 0.0 . 71 . . Atlas-SNP TOPAZ1 375337 hgsc.bcm.edu hg19 3 44364606 44364606 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . . NM_001145030 exon18 c.T4494C p.Y1498Y ACAATATAGCCTT . 46.0 4.0 71.0 0.0 . . . . Atlas-SNP TGM4 7047 hgsc.bcm.edu hg19 3 44952888 44952888 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TGM4 NM_003241 exon13 c.T1903C p.S635P CAGACCTCTGACC . 91.0 4.0 147.0 0.0 . 82 . . Atlas-SNP SETD2 29072 hgsc.bcm.edu hg19 3 47155420 47155420 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc SETD2_ENST00000409792,caecum,carcinoma,0,3 SETD2 NM_014159 exon5 c.T4661C p.V1554A AGTATGACTTCCA . 83.0 5.0 123.0 0.0 . 721 . . Atlas-SNP COL7A1 1294 hgsc.bcm.edu hg19 3 48622492 48622492 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . COL7A1 NM_000094 exon32 c.A3952G p.T1318A CAGGGGTCCCAGG . 119.0 8.0 185.0 0.0 . 320 . . Atlas-SNP FOXP1 27086 hgsc.bcm.edu hg19 3 71026863 71026863 + Silent SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . FOXP1 NM_001244815 exon11 c.G1365A p.A455A GTTCTGCGCAATA . 77.0 4.0 127.0 0.0 . 104 . . Atlas-SNP IMPG2 50939 hgsc.bcm.edu hg19 3 100986353 100986353 + Splice_Site SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . IMPG2 NM_016247 exon10 c.908+2T>C . AAAAGTACCTGTC . 80.0 4.0 145.0 0.0 . 164 . . Atlas-SNP DZIP3 9666 hgsc.bcm.edu hg19 3 108367792 108367792 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DZIP3 NM_014648 exon17 c.A1990G p.K664E AAGAAGAAGACTA . 95.0 4.0 132.0 0.0 . 111 . . Atlas-SNP DPPA4 55211 hgsc.bcm.edu hg19 3 109052833 109052833 + Missense_Mutation SNP G G T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DPPA4 NM_018189 exon2 c.C62A p.S21Y TCTGTGGAGGTCC . 94.0 4.0 142.0 0.0 . 56 . . Atlas-SNP MAATS1 89876 hgsc.bcm.edu hg19 3 119421983 119421983 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . . NM_033364 exon1 c.A38G p.Q13R AGGCCCAGCCGCA . 124.0 6.0 201.0 0.0 . . . . Atlas-SNP PARP14 54625 hgsc.bcm.edu hg19 3 122419251 122419251 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PARP14 NM_017554 exon6 c.T1850C p.L617P AAGGGCTCACTCA . 58.0 4.0 108.0 0.0 . 242 . . Atlas-SNP HSPBAP1 79663 hgsc.bcm.edu hg19 3 122459296 122459296 + Missense_Mutation SNP T T G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . HSPBAP1 NM_024610 exon8 c.A1363C p.T455P GAGGAGTCGTAGT . 281.0 16.0 448.0 0.0 . 32 . . Atlas-SNP CCDC14 64770 hgsc.bcm.edu hg19 3 123634213 123634213 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CCDC14 NM_022757 exon12 c.G2152A p.D718N CTTCATCAGAATC . 78.0 4.0 127.0 0.0 . 97 . . Atlas-SNP MUC13 56667 hgsc.bcm.edu hg19 3 124646709 124646709 + Missense_Mutation SNP G G A rs75727765 TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MUC13 NM_033049 exon2 c.C181T p.P61S GGAAAGGTGTATT . 118.0 7.0 142.0 0.0 . 57 . . Atlas-SNP C3orf72 401089 hgsc.bcm.edu hg19 3 138668461 138668461 + Missense_Mutation SNP A A T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc C3orf72,NS,carcinoma,0,2 C3orf72 NM_001040061 exon2 c.A200T p.H67L TCCGGCATTCGAA . 21.0 2.0 42.0 0.0 . 13 . . Atlas-SNP KCNAB1 7881 hgsc.bcm.edu hg19 3 155838405 155838405 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . KCNAB1 NM_172160 exon1 c.T5C p.L2P CGATGCTGGCAGC . 63.0 4.0 104.0 0.0 . 176 . . Atlas-SNP TNIK 23043 hgsc.bcm.edu hg19 3 170784050 170784050 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TNIK NM_015028 exon32 c.A3925G p.T1309A GTCCTGTTTCCAC . 94.0 4.0 136.0 0.0 . 313 . . Atlas-SNP NLGN1 22871 hgsc.bcm.edu hg19 3 173997373 173997373 + Missense_Mutation SNP T T G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NLGN1 NM_014932 exon6 c.T1582G p.F528V TGCAATTTCTCCA . 201.0 93.0 323.0 0.0 . 209 . . Atlas-SNP TBL1XR1 79718 hgsc.bcm.edu hg19 3 176765128 176765128 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TBL1XR1 NM_024665 exon9 c.A824G p.N275S TTCTTATTCCATT . 106.0 5.0 226.0 0.0 . 87 . . Atlas-SNP KCNMB2 10242 hgsc.bcm.edu hg19 3 178560484 178560484 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . KCNMB2 NM_005832 exon6 c.T467C p.M156T AATCCATGTCCCT . 79.0 4.0 138.0 0.0 . 35 . . Atlas-SNP ABCC5 10057 hgsc.bcm.edu hg19 3 183706403 183706403 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ABCC5 NM_005688 exon4 c.T400C p.W134R GAGACCACACGTC . 79.0 4.0 143.0 0.0 . 142 . . Atlas-SNP LIPH 200879 hgsc.bcm.edu hg19 3 185226629 185226629 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . LIPH NM_139248 exon10 c.A1305G p.E435E AACGTTTTCCATC . 89.0 4.0 133.0 0.0 . 56 . . Atlas-SNP MASP1 5648 hgsc.bcm.edu hg19 3 186938875 186938875 + Silent SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MASP1 NM_001879 exon15 c.C1857T p.A619A CAGCGGGGCATAA . 140.0 62.0 197.0 0.0 . 240 . . Atlas-SNP PAK2 5062 hgsc.bcm.edu hg19 3 196547362 196547362 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PAK2 NM_002577 exon13 c.A1274G p.D425G AAGTCGACATATG . 94.0 4.0 198.0 0.0 . 113 . . Atlas-SNP DLG1 1739 hgsc.bcm.edu hg19 3 197023321 197023321 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DLG1 NM_001204386 exon3 c.A47G p.E16G TATTCCTCCAAAA . 82.0 4.0 154.0 0.0 . 120 . . Atlas-SNP HTT 3064 hgsc.bcm.edu hg19 4 3210595 3210595 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . HTT NM_002111 exon46 c.A6248G p.D2083G CGCTGGACGGGGA . 73.0 4.0 114.0 0.0 . 221 . . Atlas-SNP TBC1D14 57533 hgsc.bcm.edu hg19 4 7006574 7006574 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TBC1D14 NM_001113361 exon8 c.T1274C p.L425P CAGAGCTCTTTGA . 39.0 4.0 79.0 0.0 . 110 . . Atlas-SNP KLB 152831 hgsc.bcm.edu hg19 4 39447995 39447995 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . KLB NM_175737 exon4 c.T1649C p.L550P CTCATCTGTACGT . 43.0 4.0 29.0 0.0 . 95 . . Atlas-SNP RHOH 399 hgsc.bcm.edu hg19 4 40245536 40245536 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc RHOH,colon,carcinoma,0,1 RHOH NM_004310 exon3 c.G530A p.R177Q GGAGACGAAACAG . 105.0 10.0 216.0 0.0 . 32 . . Atlas-SNP REST 5978 hgsc.bcm.edu hg19 4 57798184 57798184 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . REST NM_001193508 exon4 c.A3160G p.K1054E GCAGTCAAAGCGG . 101.0 5.0 189.0 0.0 . 104 . . Atlas-SNP RUFY3 22902 hgsc.bcm.edu hg19 4 71668679 71668679 + Missense_Mutation SNP A A C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RUFY3 NM_001037442 exon16 c.A1629C p.Q543H GCTGCAACCCCAC . 59.0 4.0 113.0 0.0 . 61 . . Atlas-SNP ANTXR2 118429 hgsc.bcm.edu hg19 4 80905088 80905088 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc ANTXR2_ENST00000403729,colon,carcinoma,0,1 ANTXR2 NM_001145794 exon14 c.A1123G p.T375A CCACAGTTGGCCA . 50.0 2.0 114.0 0.0 . 97 . . Atlas-SNP COPS4 51138 hgsc.bcm.edu hg19 4 83996548 83996548 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . COPS4 NM_016129 exon10 c.A1186G p.T396A GAATGGACAGCAC . 92.0 4.0 149.0 0.0 . 31 . . Atlas-SNP TBCK 93627 hgsc.bcm.edu hg19 4 107154200 107154200 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TBCK NM_001163436 exon17 c.T1534C p.C512R GATGACAGCGAGG . 76.0 4.0 109.0 0.0 . 89 . . Atlas-SNP PRMT10 90826 hgsc.bcm.edu hg19 4 148559822 148559822 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PRMT10 NM_138364 exon12 c.T2399C p.L800S GTATCCAACCTAA . 88.0 4.0 186.0 0.0 . 68 . . Atlas-SNP FBXW7 55294 hgsc.bcm.edu hg19 4 153268212 153268212 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . FBXW7 NM_033632 exon4 c.T596C p.L199P GGTACAAGCCCAG . 95.0 4.0 179.0 0.0 . 2157 . . Atlas-SNP TLR2 7097 hgsc.bcm.edu hg19 4 154625449 154625449 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TLR2 NM_003264 exon3 c.G1390A p.V464I TTAGATGTTAGCA . 101.0 44.0 144.0 0.0 . 84 . . Atlas-SNP MAP9 79884 hgsc.bcm.edu hg19 4 156294381 156294381 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MAP9 NM_001039580 exon4 c.T388C p.S130P ATTCAGAGAAAGA . 78.0 4.0 108.0 0.0 . 79 . . Atlas-SNP ING2 3622 hgsc.bcm.edu hg19 4 184426478 184426478 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ING2 NM_001564 exon1 c.A130G p.R44G ATGCAGAGGAACG . 162.0 7.0 307.0 0.0 . 20 . . Atlas-SNP SNX25 83891 hgsc.bcm.edu hg19 4 186244833 186244833 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SNX25 NM_031953 exon9 c.T1136C p.V379A AAGATGTTTATGA . 98.0 4.0 200.0 0.0 . 100 . . Atlas-SNP FAT1 2195 hgsc.bcm.edu hg19 4 187628064 187628064 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . FAT1 NM_005245 exon2 c.A2918G p.N973S TCGAAGTTTCCTT . 97.0 4.0 204.0 0.0 . 500 . . Atlas-SNP PAPD7 11044 hgsc.bcm.edu hg19 5 6743905 6743905 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PAPD7 NM_001171805 exon6 c.T447C p.G149G TACAGGTGGAATT . 87.0 4.0 147.0 0.0 . 69 . . Atlas-SNP EGFLAM 133584 hgsc.bcm.edu hg19 5 38337733 38337733 + Splice_Site SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . EGFLAM NM_001205301 exon2 c.207+2T>C . ACACTGTGAGTAC . 57.0 26.0 128.0 0.0 . 302 . . Atlas-SNP RPL37 6167 hgsc.bcm.edu hg19 5 40834674 40834674 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RPL37 NM_000997 exon2 c.A38G p.N13S GTCTTATTGCGAC . 76.0 4.0 160.0 0.0 . 7 . . Atlas-SNP ZNF131 7690 hgsc.bcm.edu hg19 5 43161821 43161821 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZNF131 NM_003432 exon6 c.A740G p.K247R ACATGAAATCACA . 100.0 4.0 183.0 0.0 . 51 . . Atlas-SNP NNT 23530 hgsc.bcm.edu hg19 5 43628311 43628311 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NNT NM_182977 exon7 c.T786C p.A262A TGCAGCTTTGGAA . 139.0 6.0 255.0 0.0 . 92 . . Atlas-SNP GPX8 493869 hgsc.bcm.edu hg19 5 54459895 54459895 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . GPX8 NM_001008397 exon3 c.A479G p.K160R CAAAGAAGGAACC . 52.0 4.0 87.0 0.0 . 20 . . Atlas-SNP ERBB2IP 55914 hgsc.bcm.edu hg19 5 65321309 65321309 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ERBB2IP NM_001253701 exon11 c.T819C p.G273G ATTAGGTTCGTTG . 56.0 4.0 78.0 0.0 . 120 . . Atlas-SNP MAP1B 4131 hgsc.bcm.edu hg19 5 71492148 71492148 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MAP1B NM_005909 exon5 c.A2966G p.K989R GGGAGAAGAGGGA . 123.0 5.0 222.0 0.0 . 243 . . Atlas-SNP ZNF366 167465 hgsc.bcm.edu hg19 5 71756449 71756449 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZNF366 NM_152625 exon2 c.A875G p.Q292R CTGAGCTGCTTGA . 98.0 4.0 146.0 0.0 . 108 . . Atlas-SNP ST8SIA4 7903 hgsc.bcm.edu hg19 5 100222062 100222062 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ST8SIA4 NM_175052 exon3 c.A488G p.H163R AAATTGTGACTGT . 95.0 4.0 132.0 0.0 . 77 . . Atlas-SNP FER 2241 hgsc.bcm.edu hg19 5 108436123 108436123 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . FER NM_005246 exon17 c.A1951G p.R651G CTGAGAAGGAAGA . 74.0 4.0 122.0 0.0 . 100 . . Atlas-SNP YTHDC2 64848 hgsc.bcm.edu hg19 5 112920155 112920155 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . YTHDC2 NM_022828 exon26 c.T3804C p.P1268P TAGTCCTTCTCCT . 98.0 4.0 159.0 0.0 . 118 . . Atlas-SNP PGGT1B 5229 hgsc.bcm.edu hg19 5 114548112 114548112 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PGGT1B NM_005023 exon9 c.A1121G p.H374R GAGATATGTACAT . 153.0 52.0 296.0 0.0 . 26 . . Atlas-SNP DMXL1 1657 hgsc.bcm.edu hg19 5 118469314 118469314 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DMXL1 NM_005509 exon12 c.A1695G p.K565K ACAAAAACCTTCT . 103.0 5.0 179.0 0.0 . 268 . . Atlas-SNP RAPGEF6 51735 hgsc.bcm.edu hg19 5 130834162 130834162 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RAPGEF6 NM_016340 exon12 c.T1393C p.F465L TCTTAAACCATTC . 87.0 4.0 119.0 0.0 . 361 . . Atlas-SNP FAM53C 51307 hgsc.bcm.edu hg19 5 137682560 137682560 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc FAM53C,colon,carcinoma,-1,1 FAM53C NM_001135647 exon5 c.T1091C p.V364A GGGCTGTGCGGTG . 72.0 3.0 106.0 0.0 . 35 . . Atlas-SNP PCDHB7 56129 hgsc.bcm.edu hg19 5 140552784 140552784 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc PCDHB7,NS,carcinoma,0,1 PCDHB7 NM_018940 exon1 c.T368C p.V123A TATGGGTCAGAGA . 48.0 3.0 91.0 0.0 . 231 . . Atlas-SNP PCDHGB6 56100 hgsc.bcm.edu hg19 5 140790042 140790042 + Missense_Mutation SNP A A G rs185995562 by1000genomes;alternate_allele TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PCDHGB6 NM_032100 exon1 c.A2273G p.H758R TTGCACATACGGG . 125.0 5.0 194.0 0.0 . 120 . A|1.000;T|0.000 Atlas-SNP RBM27 54439 hgsc.bcm.edu hg19 5 145613206 145613206 + Silent SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RBM27 NM_018989 exon7 c.C1044T p.G348G TCCAGGCCCAGGC . 68.0 17.0 156.0 0.0 . 119 . . Atlas-SNP RBM27 54439 hgsc.bcm.edu hg19 5 145613209 145613209 + Silent SNP A A T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc RBM27,colon,carcinoma,0,1 RBM27 NM_018989 exon7 c.A1047T p.P349P AGGCCCAGGCCCG . 71.0 16.0 162.0 0.0 . 119 . . Atlas-SNP HRH2 3274 hgsc.bcm.edu hg19 5 175111079 175111079 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . HRH2 NM_001131055 exon2 c.A843G p.S281S CAACTCAGCCCTG . 83.0 4.0 144.0 0.0 . 108 . . Atlas-SNP RMND5B 64777 hgsc.bcm.edu hg19 5 177570698 177570698 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RMND5B NM_022762 exon6 c.T497C p.L166P AAGCCCTGCACGA . 107.0 5.0 157.0 0.0 . 37 . . Atlas-SNP CANX 821 hgsc.bcm.edu hg19 5 179155615 179155615 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CANX NM_001746 exon15 c.A1749G p.S583S CAGATCACCAAGA . 92.0 4.0 226.0 0.0 . 47 . . Atlas-SNP PAK1IP1 55003 hgsc.bcm.edu hg19 6 10702604 10702604 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PAK1IP1 NM_017906 exon3 c.A250G p.T84A ATAGGTACAATAA . 76.0 17.0 97.0 0.0 . 30 . . Atlas-SNP CDKAL1 54901 hgsc.bcm.edu hg19 6 21065331 21065331 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CDKAL1 NM_017774 exon12 c.A1108G p.T370A GGAGAAACAGATC . 125.0 5.0 146.0 0.0 . 55 . . Atlas-SNP GNL1 2794 hgsc.bcm.edu hg19 6 30523924 30523924 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . GNL1 NM_005275 exon1 c.A57G p.K19K CTCCCGTTTGTCC . 89.0 4.0 111.0 0.0 . 47 . . Atlas-SNP FLOT1 10211 hgsc.bcm.edu hg19 6 30707949 30707949 + Missense_Mutation SNP C C A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . FLOT1 NM_005803 exon8 c.G709T p.A237S GATAGGCCAGGTC . 91.0 24.0 93.0 0.0 . 28 . . Atlas-SNP VWA7 80737 hgsc.bcm.edu hg19 6 31740763 31740763 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc .,1 . NM_025258 exon7 c.T1055C p.V352A TAGTGGACAGGCT . 12.0 5.0 22.0 0.0 . . . . Atlas-SNP UHRF1BP1 54887 hgsc.bcm.edu hg19 6 34831811 34831811 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . UHRF1BP1 NM_017754 exon15 c.C3248T p.A1083V GGGTGGCAGCCCC . 61.0 17.0 99.0 0.0 . 102 . . Atlas-SNP MRPS10 55173 hgsc.bcm.edu hg19 6 42185570 42185570 + Silent SNP C C A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MRPS10 NM_018141 exon1 c.G18T p.A6A ACCGAACGCTGTC . 59.0 16.0 85.0 0.0 . 9 . . Atlas-SNP CUL9 23113 hgsc.bcm.edu hg19 6 43183025 43183025 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CUL9 NM_015089 exon30 c.T5897C p.V1966A CAGATGTCCCTTT . 66.0 4.0 80.0 0.0 . 248 . . Atlas-SNP C6orf223 221416 hgsc.bcm.edu hg19 6 43970788 43970788 + Silent SNP G G T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . C6orf223 NM_153246 exon4 c.G654T p.R218R GGCACGGCTAATG . 135.0 45.0 145.0 0.0 . 14 . . Atlas-SNP CAPN11 11131 hgsc.bcm.edu hg19 6 44150883 44150883 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CAPN11 NM_007058 exon21 c.A2045G p.Q682R TAATGCAGGTCCT . 77.0 4.0 99.0 0.0 . 66 . . Atlas-SNP PHIP 55023 hgsc.bcm.edu hg19 6 79692705 79692705 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PHIP NM_017934 exon23 c.A2667G p.K889K CTTCTGTTTTTCA . 50.0 4.0 123.0 0.0 . 177 . . Atlas-SNP RNGTT 8732 hgsc.bcm.edu hg19 6 89322527 89322527 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RNGTT NM_003800 exon16 c.T1705C p.S569P CTTGAGAAGCTGC . 72.0 4.0 208.0 0.0 . 52 . . Atlas-SNP GABRR2 2570 hgsc.bcm.edu hg19 6 89977775 89977775 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . GABRR2 NM_002043 exon5 c.T553C p.F185L GGGGAAAGTGGCT . 89.0 4.0 293.0 0.0 . 41 . . Atlas-SNP ANKRD6 22881 hgsc.bcm.edu hg19 6 90326289 90326289 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ANKRD6 NM_001242809 exon8 c.A627G p.T209T AGACACAGCACTT . 100.0 4.0 287.0 0.0 . 51 . . Atlas-SNP FBXL4 26235 hgsc.bcm.edu hg19 6 99374410 99374410 + Missense_Mutation SNP A A C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . FBXL4 NM_012160 exon3 c.T455G p.I152S ATTCTAATGACTG . 63.0 45.0 187.0 0.0 . 54 . . Atlas-SNP COQ3 51805 hgsc.bcm.edu hg19 6 99823850 99823850 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . COQ3 NM_017421 exon5 c.A695G p.E232G AATGTTTCTAGAT . 63.0 4.0 164.0 0.0 . 19 . . Atlas-SNP ASCC3 10973 hgsc.bcm.edu hg19 6 101095214 101095214 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ASCC3 NM_006828 exon21 c.T3366C p.G1122G AGCCCAACCCCAA . 67.0 4.0 168.0 0.0 . 205 . . Atlas-SNP LAMA2 3908 hgsc.bcm.edu hg19 6 129621989 129621989 + Nonsense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . LAMA2 NM_000426 exon22 c.G3146A p.W1049X ATACCTGGGGCCA . 87.0 4.0 182.0 0.0 . 481 . . Atlas-SNP ZBTB2 57621 hgsc.bcm.edu hg19 6 151686763 151686763 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZBTB2 NM_020861 exon3 c.G1438A p.E480K GCCCTTCGTCTAG . 92.0 5.0 242.0 0.0 . 30 . . Atlas-SNP TBP 6908 hgsc.bcm.edu hg19 6 170871004 170871004 + Silent SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TBP NM_003194 exon3 c.G180A p.Q60Q GCAGCAGCAACAA . 42.0 5.0 91.0 0.0 . 58 . . Atlas-SNP SDK1 221935 hgsc.bcm.edu hg19 7 4091349 4091349 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SDK1 NM_152744 exon19 c.G2798A p.G933E ACCATGGACACAT . 199.0 75.0 200.0 0.0 . 361 . . Atlas-SNP RNF216 54476 hgsc.bcm.edu hg19 7 5781438 5781438 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RNF216 NM_207111 exon4 c.A210G p.K70K CTGAGGTTTATTT . 89.0 4.0 96.0 0.0 . 71 . . Atlas-SNP GLCCI1 113263 hgsc.bcm.edu hg19 7 8126065 8126065 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . GLCCI1 NM_138426 exon8 c.G1541A p.G514D CAGCGGGCTCCAT . 161.0 7.0 132.0 0.0 . 50 . . Atlas-SNP SCIN 85477 hgsc.bcm.edu hg19 7 12620702 12620702 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SCIN NM_001112706 exon3 c.T372C p.S124S GGCATCTGGATTA . 94.0 4.0 103.0 0.0 . 105 . . Atlas-SNP SNX13 23161 hgsc.bcm.edu hg19 7 17933019 17933019 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SNX13 NM_015132 exon3 c.C164T p.S55L TTCTCTGAGTTTG . 199.0 41.0 229.0 0.0 . 113 . . Atlas-SNP SP4 6671 hgsc.bcm.edu hg19 7 21469063 21469063 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SP4 NM_003112 exon3 c.A280G p.T94A CTGGTAACAACGC . 104.0 5.0 105.0 0.0 . 91 . . Atlas-SNP STK31 56164 hgsc.bcm.edu hg19 7 23802460 23802460 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . STK31 NM_031414 exon11 c.A1334G p.Q445R AAATGCAGCAGAA . 119.0 5.0 164.0 0.0 . 175 . . Atlas-SNP PDE1C 5137 hgsc.bcm.edu hg19 7 32338269 32338269 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PDE1C NM_001191058 exon1 c.A79G p.T27A CTATGGTGAAGCT . 81.0 4.0 106.0 0.0 . 465 . . Atlas-SNP DNAJB9 4189 hgsc.bcm.edu hg19 7 108212222 108212222 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DNAJB9 NM_012328 exon2 c.A52G p.T18A ATGATAACAGAAT . 98.0 4.0 146.0 0.0 . 25 . . Atlas-SNP EXOC4 60412 hgsc.bcm.edu hg19 7 133041177 133041177 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . EXOC4 NM_021807 exon6 c.T857C p.L286S AGGGCTTGGCGAA . 86.0 4.0 109.0 0.0 . 118 . . Atlas-SNP AGPAT5 55326 hgsc.bcm.edu hg19 8 6614716 6614716 + Missense_Mutation SNP C C A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc AGPAT5,NS,carcinoma,0,1 AGPAT5 NM_018361 exon8 c.C902A p.P301Q CAGATCCAGAAAG . 48.0 2.0 108.0 0.0 . 31 . . Atlas-SNP RP1L1 94137 hgsc.bcm.edu hg19 8 10464506 10464506 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RP1L1 NM_178857 exon4 c.G7102A p.E2368K AACCTTCACTGGC . 32.0 25.0 96.0 0.0 . 453 . . Atlas-SNP MTMR7 9108 hgsc.bcm.edu hg19 8 17218727 17218727 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MTMR7 NM_004686 exon4 c.A367G p.R123G GCTCTCTTTCTTC . 97.0 4.0 251.0 0.0 . 75 . . Atlas-SNP GSR 2936 hgsc.bcm.edu hg19 8 30537135 30537135 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . GSR NM_000637 exon13 c.T1471C p.F491L CAGCAAAACCCTG . 79.0 4.0 319.0 0.0 . 53 . . Atlas-SNP GPR124 25960 hgsc.bcm.edu hg19 8 37699046 37699046 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . GPR124 NM_032777 exon19 c.T3190C p.F1064L GGCCTCTTCGTCT . 49.0 4.0 138.0 0.0 . 85 . . Atlas-SNP CHRNA6 8973 hgsc.bcm.edu hg19 8 42611479 42611479 + Missense_Mutation SNP A A G rs373608967 TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CHRNA6 NM_004198 exon5 c.T863C p.V288A GTGATGACCAGCA . 119.0 6.0 153.0 0.0 . 60 . . Atlas-SNP RP1 6101 hgsc.bcm.edu hg19 8 55542668 55542668 + Missense_Mutation SNP T T A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RP1 NM_006269 exon4 c.T6226A p.F2076I AACAGATTCCAGG . 68.0 24.0 89.0 0.0 . 429 . . Atlas-SNP CHD7 55636 hgsc.bcm.edu hg19 8 61757545 61757545 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CHD7 NM_017780 exon22 c.A4973G p.E1658G GGGATGAGAATAT . 100.0 4.0 147.0 0.0 . 534 . . Atlas-SNP PRDM14 63978 hgsc.bcm.edu hg19 8 70970987 70970987 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc PRDM14,caecum,carcinoma,0,1 PRDM14 NM_024504 exon6 c.T1274C p.V425A TTGTCCACACAGG . 124.0 5.0 138.0 1.0 . 102 . . Atlas-SNP STMN2 11075 hgsc.bcm.edu hg19 8 80553730 80553730 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . STMN2 NM_007029 exon3 c.A233G p.D78G AGAAAGACCTGTC . 111.0 5.0 149.0 0.0 . 23 . . Atlas-SNP KIAA0196 9897 hgsc.bcm.edu hg19 8 126071720 126071720 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . KIAA0196 NM_014846 exon13 c.A1586G p.K529R AGAAACTTTCGAG . 71.0 4.0 81.0 0.0 . 90 . . Atlas-SNP TRAPPC9 83696 hgsc.bcm.edu hg19 8 141381200 141381200 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TRAPPC9 NM_031466 exon8 c.C1508T p.A503V AAGAACGCAGACT . 65.0 21.0 93.0 0.0 . 114 . . Atlas-SNP SCRIB 23513 hgsc.bcm.edu hg19 8 144890960 144890960 + Nonsense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SCRIB NM_015356 exon15 c.G1934A p.W645X TTGTGCCAGCCCC . 52.0 11.0 63.0 0.0 . 192 . . Atlas-SNP EPPK1 83481 hgsc.bcm.edu hg19 8 144944289 144944289 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . EPPK1 NM_031308 exon1 c.G3133A p.A1045T CTGTGGCCACTTG . 154.0 52.0 170.0 0.0 . 199 . . Atlas-SNP CPSF1 29894 hgsc.bcm.edu hg19 8 145619449 145619449 + Missense_Mutation SNP C C A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc CPSF1,NS,carcinoma,0,1 CPSF1 NM_013291 exon33 c.G3811T p.V1271L ACATACCCAGAAA . 167.0 47.0 272.0 0.0 . 92 . . Atlas-SNP PLGRKT 55848 hgsc.bcm.edu hg19 9 5361763 5361763 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . . NM_018465 exon4 c.A207G p.T69T CCCAGCTGTTAAA . 62.0 4.0 81.0 0.0 . . . . Atlas-SNP ZDHHC21 340481 hgsc.bcm.edu hg19 9 14639974 14639974 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZDHHC21 NM_178566 exon8 c.A541G p.R181G CTAGTCTCATTAT . 61.0 7.0 76.0 0.0 . 22 . . Atlas-SNP TMEM8B 51754 hgsc.bcm.edu hg19 9 35853674 35853674 + Missense_Mutation SNP G G T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TMEM8B NM_001042590 exon13 c.G1256T p.G419V TTGCGGGCAGTGT . 182.0 65.0 289.0 0.0 . 53 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79322643 79322643 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc PRUNE2_ENST00000376718,colon,carcinoma,0,1 PRUNE2 NM_015225 exon8 c.A4547G p.K1516R GACCCCTTAACGT . 65.0 3.0 82.0 0.0 . 331 . . Atlas-SNP UBQLN1 29979 hgsc.bcm.edu hg19 9 86276838 86276838 + Missense_Mutation SNP A A G rs79530639 bycluster TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . UBQLN1 NM_013438 exon11 c.T1634C p.V545A AATCTGACTTCTG . 103.0 5.0 140.0 0.0 . 49 . . Atlas-SNP NAA35 60560 hgsc.bcm.edu hg19 9 88611410 88611410 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NAA35 NM_024635 exon12 c.T974C p.M325T AAGAAATGGTGAA . 90.0 4.0 166.0 0.0 . 50 . . Atlas-SNP BICD2 23299 hgsc.bcm.edu hg19 9 95481866 95481866 + Splice_Site SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . BICD2 NM_001003800 exon6 c.1063-2A>G . TCCATCTGCAAAG . 56.0 4.0 91.0 0.0 . 68 . . Atlas-SNP ABCA1 19 hgsc.bcm.edu hg19 9 107568697 107568697 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ABCA1 NM_005502 exon31 c.A4289G p.Q1430R CCTGCCTGGCAGG . 71.0 4.0 170.0 0.0 . 244 . . Atlas-SNP ABCA1 19 hgsc.bcm.edu hg19 9 107583711 107583711 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ABCA1 NM_005502 exon20 c.A2905G p.S969G TGGTGCTCATCTC . 87.0 4.0 118.0 0.0 . 244 . . Atlas-SNP CTNNAL1 8727 hgsc.bcm.edu hg19 9 111734974 111734974 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CTNNAL1 NM_003798 exon9 c.A1328G p.Q443R TCTTTCTGTTCAG . 75.0 4.0 108.0 0.0 . 51 . . Atlas-SNP C9orf43 257169 hgsc.bcm.edu hg19 9 116187645 116187645 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc C9orf43,colon,carcinoma,0,1 C9orf43 NM_152786 exon10 c.G887A p.R296Q AGCAGCGGCAGCA . 65.0 6.0 123.0 1.0 . 49 . . Atlas-SNP PSMD5 5711 hgsc.bcm.edu hg19 9 123589185 123589185 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PSMD5 NM_005047 exon6 c.A672G p.R224R GGTGGCTCTAAAA . 75.0 4.0 132.0 0.0 . 34 . . Atlas-SNP CNTRL 11064 hgsc.bcm.edu hg19 9 123857201 123857201 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CNTRL NM_007018 exon3 c.A384G p.E128E ACTTGAAGTACTG . 54.0 4.0 102.0 0.0 . 161 . . Atlas-SNP NOTCH1 4851 hgsc.bcm.edu hg19 9 139395092 139395092 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NOTCH1 NM_017617 exon31 c.A5846G p.E1949G CTGGCCTCCAGCA . 117.0 5.0 201.0 0.0 . 1980 . . Atlas-SNP ABCA2 20 hgsc.bcm.edu hg19 9 139913717 139913717 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ABCA2 NM_212533 exon11 c.T1557C p.Y519Y CTGGGCATAGTGA . 84.0 4.0 159.0 0.0 . 113 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 16970249 16970249 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc CUBN,NS,carcinoma,0,1 CUBN NM_001081 exon41 c.G6178A p.G2060R TGGGCCCAGGGAT . 75.0 3.0 124.0 0.0 . 515 . . Atlas-SNP NEBL 10529 hgsc.bcm.edu hg19 10 21134258 21134258 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NEBL NM_006393 exon12 c.A1156G p.R386G ATGACCTTCCTTT . 74.0 6.0 105.0 0.0 . 199 . . Atlas-SNP KIAA1217 56243 hgsc.bcm.edu hg19 10 24834953 24834953 + Silent SNP A A T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . KIAA1217 NM_019590 exon21 c.A5532T p.T1844T CCAAACAGGACCA . 196.0 73.0 346.0 0.0 . 235 . . Atlas-SNP CDHR1 92211 hgsc.bcm.edu hg19 10 85972881 85972881 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CDHR1 NM_001171971 exon16 c.T1817C p.L606P ACAACCTGGTGGA . 114.0 5.0 143.0 0.0 . 122 . . Atlas-SNP CCSER2 54462 hgsc.bcm.edu hg19 10 86131960 86131960 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CCSER2 NM_018999 exon2 c.T1152C p.D384D ACATGATGCTAAA . 98.0 4.0 118.0 0.0 . 7 . . Atlas-SNP HELLS 3070 hgsc.bcm.edu hg19 10 96354567 96354567 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . HELLS NM_018063 exon19 c.G2204A p.R735K TGGAAAGAGCAGC . 90.0 5.0 102.0 0.0 . 63 . . Atlas-SNP SMNDC1 10285 hgsc.bcm.edu hg19 10 112063340 112063340 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SMNDC1 NM_005871 exon2 c.A6G p.S2S ATCCTCTGACATC . 69.0 4.0 85.0 0.0 . 9 . . Atlas-SNP ATRNL1 26033 hgsc.bcm.edu hg19 10 116931103 116931103 + Silent SNP A A T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ATRNL1 NM_001276282 exon8 c.A1401T p.L467L TTCTCTAATAAAA . 81.0 7.0 90.0 0.0 . 219 . . Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 135012267 135012267 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . KNDC1 NM_152643 exon14 c.G2255A p.R752H TGCAGCGTGACTC . 43.0 13.0 37.0 0.0 . 155 . . Atlas-SNP MUC5B 727897 hgsc.bcm.edu hg19 11 1256342 1256342 + Silent SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MUC5B NM_002458 exon22 c.C2658T p.C886C GGAGTGCAGCCAC . 100.0 48.0 137.0 0.0 . 473 . . Atlas-SNP RRM1 6240 hgsc.bcm.edu hg19 11 4142990 4142990 + Missense_Mutation SNP A A T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RRM1 NM_001033 exon10 c.A1033T p.N345Y GAGACTAATCAGG . 101.0 42.0 209.0 0.0 . 31 . . Atlas-SNP UBQLN3 50613 hgsc.bcm.edu hg19 11 5528949 5528949 + Missense_Mutation SNP C C G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . UBQLN3 NM_017481 exon2 c.G1840C p.A614P AGTGAGCCTCAGG . 70.0 29.0 126.0 0.0 . 107 . . Atlas-SNP SMPD1 6609 hgsc.bcm.edu hg19 11 6411941 6411941 + Missense_Mutation SNP C C G rs78250081 bycluster;alternate_allele TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SMPD1 NM_000543 exon1 c.C113G p.A38G TGCTGGCGCTGGC . 19.0 7.0 0.0 0.0 . 108 . . Atlas-SNP SMPD1 6609 hgsc.bcm.edu hg19 11 6411942 6411942 + Silent SNP G G C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SMPD1 NM_000543 exon1 c.G114C p.A38A GCTGGCGCTGGCG . 19.0 7.0 0.0 0.0 . 108 . . Atlas-SNP CYB5R2 51700 hgsc.bcm.edu hg19 11 7687733 7687733 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CYB5R2 NM_016229 exon8 c.A607G p.T203A GGTGAGTCCTGGC . 81.0 4.0 168.0 0.0 . 23 . . Atlas-SNP ZNF143 7702 hgsc.bcm.edu hg19 11 9546829 9546829 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZNF143 NM_003442 exon15 c.T1729C p.S577P ACTGCCTCATCAG . 83.0 5.0 155.0 0.0 . 38 . . Atlas-SNP MICAL2 9645 hgsc.bcm.edu hg19 11 12183895 12183895 + Silent SNP C C T rs368678535 alternate_allele TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MICAL2 NM_014632 exon3 c.C193T p.L65L AAAGCCCTGTGGT . 89.0 4.0 161.0 0.0 . 114 . . Atlas-SNP TRAF6 7189 hgsc.bcm.edu hg19 11 36520043 36520043 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TRAF6 NM_004620 exon3 c.T444C p.L148L TACCTCAAGATGT . 88.0 4.0 125.0 0.0 . 56 . . Atlas-SNP PHF21A 51317 hgsc.bcm.edu hg19 11 45991402 45991402 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PHF21A NM_016621 exon8 c.T666C p.P222P TCTAGGAGGGGGG . 122.0 5.0 182.0 0.0 . 107 . . Atlas-SNP LRP4 4038 hgsc.bcm.edu hg19 11 46890579 46890579 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . LRP4 NM_002334 exon32 c.A4797G p.G1599G CATGAGTCCTTCC . 164.0 7.0 255.0 0.0 . 160 . . Atlas-SNP DDB2 1643 hgsc.bcm.edu hg19 11 47238448 47238448 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DDB2 NM_000107 exon3 c.C304T p.R102W TCTTACCGGATAT . 78.0 4.0 121.0 0.0 . 31 . . Atlas-SNP PATL1 219988 hgsc.bcm.edu hg19 11 59423450 59423450 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PATL1 NM_152716 exon7 c.A792G p.A264A AAGCTGTGCTCTC . 116.0 5.0 189.0 0.0 . 92 . . Atlas-SNP TMEM138 51524 hgsc.bcm.edu hg19 11 61136089 61136089 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TMEM138 NM_016464 exon5 c.T397C p.F133L TGCTACTTCTATA . 96.0 4.0 184.0 0.0 . 16 . . Atlas-SNP BSCL2 26580 hgsc.bcm.edu hg19 11 62458612 62458612 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . BSCL2 NM_001122955 exon8 c.T1007C p.V336A ATGTTAACCTGTG . 98.0 5.0 154.0 0.0 . 35 . . Atlas-SNP ZBTB3 79842 hgsc.bcm.edu hg19 11 62521471 62521471 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZBTB3 NM_024784 exon1 c.A64G p.R22G GAGATCTTTTTCG . 89.0 4.0 145.0 0.0 . 47 . . Atlas-SNP STX5 6811 hgsc.bcm.edu hg19 11 62592977 62592977 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . STX5 NM_003164 exon6 c.T458C p.L153P TCCTGGAGCTGAG . 118.0 5.0 182.0 0.0 . 42 . . Atlas-SNP WDR74 54663 hgsc.bcm.edu hg19 11 62600449 62600449 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc WDR74_ENST00000525239,NS,carcinoma,0,2 WDR74 NM_018093 exon12 c.A1133G p.K378R GGCCGCTTCTTCT . 49.0 2.0 79.0 0.0 . 36 . . Atlas-SNP PYGM 5837 hgsc.bcm.edu hg19 11 64527357 64527357 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PYGM NM_001164716 exon1 c.T14C p.L5P TCTGACAGGGGCC . 81.0 4.0 127.0 0.0 . 77 . . Atlas-SNP CAPN1 823 hgsc.bcm.edu hg19 11 64977873 64977873 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CAPN1 NM_001198869 exon20 c.T2009C p.V670A TGGCGGTCGACTT . 75.0 5.0 142.0 0.0 . 44 . . Atlas-SNP EHBP1L1 254102 hgsc.bcm.edu hg19 11 65350029 65350029 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . EHBP1L1 NM_001099409 exon9 c.A1886G p.E629G AGTGTGAGGGACT . 76.0 4.0 138.0 0.0 . 64 . . Atlas-SNP MRPL48 51642 hgsc.bcm.edu hg19 11 73536778 73536778 + Silent SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MRPL48 NM_016055 exon4 c.G138A p.R46R CAGTCGGCCCTAC . 63.0 4.0 93.0 0.0 . 16 . . Atlas-SNP TMEM126A 84233 hgsc.bcm.edu hg19 11 85367380 85367380 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TMEM126A NM_032273 exon5 c.A423G p.K141K ACACAAAGGGAAC . 83.0 4.0 161.0 0.0 . 20 . . Atlas-SNP HYOU1 10525 hgsc.bcm.edu hg19 11 118925746 118925746 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . HYOU1 NM_006389 exon6 c.T446C p.V149A CCCAACACTTCCT . 31.0 4.0 71.0 0.0 . 88 . . Atlas-SNP WNK1 65125 hgsc.bcm.edu hg19 12 970296 970296 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc WNK1_ENST00000537687,rectum,carcinoma,-2,1 WNK1 NM_001184985 exon7 c.G1738A p.E580K GAGCAAGAAAAAA . 56.0 3.0 88.0 2.0 . 403 . . Atlas-SNP RAD51AP1 10635 hgsc.bcm.edu hg19 12 4665649 4665649 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RAD51AP1 NM_001130862 exon9 c.A903G p.K301K CAAGAAACCTAAA . 62.0 4.0 106.0 0.0 . 30 . . Atlas-SNP PZP 5858 hgsc.bcm.edu hg19 12 9345181 9345181 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PZP NM_002864 exon12 c.A1409G p.E470G ATAGTCTCCGTGT . 134.0 6.0 181.0 0.0 . 422 . . Atlas-SNP PLBD1 79887 hgsc.bcm.edu hg19 12 14659104 14659104 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PLBD1 NM_024829 exon10 c.G1471A p.D491N TTGTGTCATAACA . 77.0 5.0 160.0 0.0 . 36 . . Atlas-SNP CMAS 55907 hgsc.bcm.edu hg19 12 22215331 22215331 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CMAS NM_018686 exon7 c.A1077G p.K359K GAGAAAAGAAATG . 141.0 6.0 255.0 0.0 . 45 . . Atlas-SNP CNTN1 1272 hgsc.bcm.edu hg19 12 41318438 41318438 + Silent SNP C C G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CNTN1 NM_001256063 exon6 c.C480G p.P160P TGACCCCCCATAC . 118.0 27.0 240.0 0.0 . 207 . . Atlas-SNP ADAMTS20 80070 hgsc.bcm.edu hg19 12 43856718 43856718 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ADAMTS20 NM_025003 exon11 c.A1594G p.T532A AGTCTGTTCCATC . 82.0 4.0 145.0 0.0 . 635 . . Atlas-SNP PUS7L 83448 hgsc.bcm.edu hg19 12 44148626 44148626 + Silent SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc PUS7L,NS,carcinoma,0,1 PUS7L NM_001098614 exon2 c.C423T p.A141A ATCACAGGCAAAA . 75.0 25.0 119.0 0.0 . 73 . . Atlas-SNP GPR84 53831 hgsc.bcm.edu hg19 12 54757190 54757190 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . GPR84 NM_020370 exon2 c.T446C p.V149A CTGGCCACGCCCA . 50.0 24.0 83.0 0.0 . 38 . . Atlas-SNP STAT6 6778 hgsc.bcm.edu hg19 12 57498314 57498314 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . STAT6 NM_001178079 exon11 c.A1145G p.E382G CACTTCTCCTCTG . 81.0 4.0 141.0 0.0 . 69 . . Atlas-SNP ZFC3H1 196441 hgsc.bcm.edu hg19 12 72004493 72004493 + Silent SNP A A G rs377232932 TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZFC3H1 NM_144982 exon34 c.T5814C p.C1938C TGATGCACAAAGA . 80.0 4.0 97.0 0.0 . 172 . . Atlas-SNP PPP1R12A 4659 hgsc.bcm.edu hg19 12 80226243 80226243 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PPP1R12A NM_002480 exon4 c.A516G p.E172E TTCTTCTTCCTTT . 91.0 4.0 133.0 0.0 . 76 . . Atlas-SNP PTPRQ 374462 hgsc.bcm.edu hg19 12 80887157 80887157 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PTPRQ NM_001145026 exon7 c.C947T p.A316V CACTTGCTACATT . 56.0 17.0 94.0 0.0 . 119 . . Atlas-SNP NR2C1 7181 hgsc.bcm.edu hg19 12 95425194 95425194 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NR2C1 NM_001032287 exon11 c.T1324C p.W442R CTTGCCAGCACTG . 61.0 4.0 88.0 0.0 . 56 . . Atlas-SNP NUP37 79023 hgsc.bcm.edu hg19 12 102470582 102470582 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NUP37 NM_024057 exon7 c.T766C p.L256L TGAATAAGCAGGC . 76.0 4.0 143.0 0.0 . 26 . . Atlas-SNP KIAA1033 23325 hgsc.bcm.edu hg19 12 105534132 105534132 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . KIAA1033 NM_015275 exon16 c.A1513G p.T505A CATATAACACAGC . 85.0 4.0 256.0 0.0 . 83 . . Atlas-SNP ACACB 32 hgsc.bcm.edu hg19 12 109617834 109617834 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ACACB NM_001093 exon10 c.T1760C p.V587A TGCAGGTGGAACA . 76.0 4.0 197.0 0.0 . 330 . . Atlas-SNP ATXN2 6311 hgsc.bcm.edu hg19 12 111963044 111963044 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ATXN2 NM_002973 exon6 c.A1128G p.A376A TTCACCTGCATCC . 54.0 4.0 138.0 0.0 . 99 . . Atlas-SNP SBNO1 55206 hgsc.bcm.edu hg19 12 123793921 123793921 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SBNO1 NM_001167856 exon27 c.A3566G p.E1189G GCTTCCTCCCATG . 91.0 5.0 181.0 0.0 . 138 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124305128 124305128 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DNAH10 NM_207437 exon23 c.A3648G p.G1216G ACTAGGAGTAGAG . 63.0 4.0 155.0 0.0 . 888 . . Atlas-SNP TMEM132C 92293 hgsc.bcm.edu hg19 12 128899651 128899651 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TMEM132C NM_001136103 exon2 c.A460G p.M154V CACATCATGGGCA . 51.0 6.0 150.0 0.0 . 142 . . Atlas-SNP TMEM132D 121256 hgsc.bcm.edu hg19 12 129694080 129694080 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TMEM132D NM_133448 exon5 c.T1428C p.D476D GTCTTCATCAGAC . 73.0 4.0 230.0 0.0 . 299 . . Atlas-SNP SPATA13 221178 hgsc.bcm.edu hg19 13 24874603 24874603 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SPATA13 NM_001166271 exon12 c.A3648G p.G1216G ACATGGAAAGTCA . 98.0 4.0 161.0 0.0 . 92 . . Atlas-SNP ATP12A 479 hgsc.bcm.edu hg19 13 25266933 25266933 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ATP12A NM_001185085 exon10 c.T1294C p.F432L CAAGTCTTTGACC . 98.0 4.0 152.0 0.0 . 172 . . Atlas-SNP ATP8A2 51761 hgsc.bcm.edu hg19 13 26114518 26114518 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc ATP8A2,colon,carcinoma,0,1 ATP8A2 NM_016529 exon8 c.A643G p.I215V CTTAAAATACGTC . 123.0 5.0 221.0 2.0 . 181 . . Atlas-SNP BRCA2 675 hgsc.bcm.edu hg19 13 32911477 32911477 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc BRCA2_ENST00000544455,NS,carcinoma,0,2 BRCA2 NM_000059 exon11 c.A2985G p.G995G GGCAGGACTCTTA . 71.0 3.0 140.0 0.0 . 812 . . Atlas-SNP CCDC168 643677 hgsc.bcm.edu hg19 13 103397021 103397021 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . . NM_001146197 exon4 c.C6026T p.T2009I TGATGTGTACTGA . 98.0 52.0 150.0 0.0 . . . . Atlas-SNP BIVM-ERCC5 0 hgsc.bcm.edu hg19 13 103525646 103525646 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . . NM_001204425 exon22 c.A4279G p.T1427A ACGAAGACAGATG . 94.0 4.0 130.0 0.0 . . . . Atlas-SNP RNASE7 84659 hgsc.bcm.edu hg19 14 21511444 21511444 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RNASE7 NM_032572 exon2 c.A293G p.H98R ACTGCCACCAGAG . 69.0 4.0 118.0 0.0 . 18 . . Atlas-SNP ARHGEF40 55701 hgsc.bcm.edu hg19 14 21544999 21544999 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ARHGEF40 NM_018071 exon8 c.T1984C p.L662L TGGGAGTTAGGAG . 89.0 4.0 168.0 0.0 . 84 . . Atlas-SNP ACIN1 22985 hgsc.bcm.edu hg19 14 23551018 23551018 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ACIN1 NM_001164814 exon5 c.A638G p.K213R TCACCTTTCTCTT . 77.0 4.0 121.0 0.0 . 147 . . Atlas-SNP FOXG1 2290 hgsc.bcm.edu hg19 14 29237096 29237096 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . FOXG1 NM_005249 exon1 c.T611C p.L204P TCACGCTCAACGG . 120.0 5.0 175.0 0.0 . 92 . . Atlas-SNP SLC25A21 89874 hgsc.bcm.edu hg19 14 37283153 37283153 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SLC25A21 NM_030631 exon3 c.A173G p.D58G AAGCTGTCTACCA . 82.0 4.0 115.0 0.0 . 24 . . Atlas-SNP CDKN3 1033 hgsc.bcm.edu hg19 14 54878223 54878223 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CDKN3 NM_005192 exon5 c.T215C p.I72T GTGGTATACAAGA . 42.0 27.0 84.0 0.0 . 9 . . Atlas-SNP SPTB 6710 hgsc.bcm.edu hg19 14 65241871 65241871 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SPTB NM_001024858 exon22 c.T4814C p.L1605P ACGTAGAGCTCCT . 87.0 4.0 105.0 0.0 . 378 . . Atlas-SNP MLH3 27030 hgsc.bcm.edu hg19 14 75514922 75514922 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc MLH3_ENST00000355774,right_upper_lobe,carcinoma,0,2 MLH3 NM_014381 exon2 c.A1437G p.S479S AGCTTCTGATGCT . 81.0 4.0 130.0 0.0 . 200 . . Atlas-SNP SEL1L 6400 hgsc.bcm.edu hg19 14 81956767 81956767 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SEL1L NM_005065 exon13 c.A1297G p.T433A GAGCTGTCTCATT . 94.0 4.0 137.0 0.0 . 67 . . Atlas-SNP TRIP11 9321 hgsc.bcm.edu hg19 14 92474090 92474090 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TRIP11 NM_004239 exon10 c.T1421C p.L474P AAATTAAGTCTTA . 95.0 4.0 155.0 0.0 . 184 . . Atlas-SNP UBR7 55148 hgsc.bcm.edu hg19 14 93678456 93678456 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc UBR7,rectum,carcinoma,0,1 UBR7 NM_175748 exon4 c.C424T p.P142S CCTTATCCTGATC . 44.0 2.0 70.0 0.0 . 36 . . Atlas-SNP BTBD7 55727 hgsc.bcm.edu hg19 14 93709383 93709383 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . BTBD7 NM_001002860 exon11 c.T2635C p.S879P GTGTGGACACACC . 116.0 5.0 171.0 0.0 . 112 . . Atlas-SNP IFI27 3429 hgsc.bcm.edu hg19 14 94582130 94582130 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc IFI27,colon,carcinoma,0,16 IFI27 NM_005532 exon4 c.T125C p.V42A CAGTTGTGGCTGT . 27.0 2.0 48.0 0.0 . 39 . . Atlas-SNP SERPINA10 51156 hgsc.bcm.edu hg19 14 94752493 94752493 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SERPINA10 NM_001100607 exon4 c.T1095C p.A365A AAGGTCAGCAAAG . 89.0 4.0 171.0 0.0 . 83 . . Atlas-SNP ATG2B 55102 hgsc.bcm.edu hg19 14 96798729 96798729 + Nonsense_Mutation SNP C C A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ATG2B NM_018036 exon10 c.G1381T p.E461X GGAACTCTCCCCA . 226.0 84.0 367.0 1.0 . 169 . . Atlas-SNP ATG2B 55102 hgsc.bcm.edu hg19 14 96809538 96809538 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ATG2B NM_018036 exon5 c.T662C p.L221P AGCTGAAGTAACT . 94.0 4.0 153.0 0.0 . 169 . . Atlas-SNP PAPOLA 10914 hgsc.bcm.edu hg19 14 97022280 97022280 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PAPOLA NM_032632 exon18 c.A1761G p.S587S AAGCTCAGGGGGT . 113.0 5.0 177.0 0.0 . 58 . . Atlas-SNP CCNK 8812 hgsc.bcm.edu hg19 14 99968554 99968554 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CCNK NM_001099402 exon7 c.A586G p.T196A TGCACCACCTTGT . 82.0 4.0 119.0 0.0 . 32 . . Atlas-SNP WARS 7453 hgsc.bcm.edu hg19 14 100808883 100808883 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . WARS NM_004184 exon9 c.A965G p.D322G GCGACGTCCCTTG . 121.0 5.0 180.0 0.0 . 37 . . Atlas-SNP RCOR1 23186 hgsc.bcm.edu hg19 14 103148307 103148307 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RCOR1 NM_015156 exon3 c.A437G p.E146G TGTCAGAAGCAAA . 72.0 4.0 109.0 0.0 . 39 . . Atlas-SNP TDRD9 122402 hgsc.bcm.edu hg19 14 104431724 104431724 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TDRD9 NM_153046 exon4 c.A475G p.S159G ACGGGAAGCGGTA . 90.0 4.0 126.0 0.0 . 175 . . Atlas-SNP CEP170B 283638 hgsc.bcm.edu hg19 14 105350781 105350781 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . . NM_001112726 exon9 c.A1665G p.A555A CAAGGCACGGAAA . 50.0 4.0 78.0 0.0 . . . . Atlas-SNP TUBGCP5 114791 hgsc.bcm.edu hg19 15 22869927 22869927 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TUBGCP5 NM_052903 exon21 c.A2851G p.K951E TTTGTGAAAGAAG . 121.0 5.0 153.0 0.0 . 82 . . Atlas-SNP NDN 4692 hgsc.bcm.edu hg19 15 23931977 23931977 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc NDN,NS,carcinoma,0,1 NDN NM_002487 exon1 c.G388A p.G130S AGCTGCCGATGAC . 47.0 3.0 100.0 0.0 . 79 . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 33922201 33922201 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RYR3 NM_001243996 exon22 c.A2740G p.T914A CCAGAAACTGAGA . 81.0 4.0 125.0 0.0 . 760 . . Atlas-SNP AQR 9716 hgsc.bcm.edu hg19 15 35166047 35166047 + Silent SNP A A G rs368882712 TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . AQR NM_014691 exon30 c.T3579C p.P1193P AGGATTAGGTTCA . 83.0 4.0 122.0 0.0 . 139 . . Atlas-SNP AQR 9716 hgsc.bcm.edu hg19 15 35167042 35167042 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . AQR NM_014691 exon29 c.A3261G p.R1087R TTTTAGTCGGCTA . 73.0 4.0 117.0 0.0 . 139 . . Atlas-SNP C15orf41 84529 hgsc.bcm.edu hg19 15 36989565 36989565 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . C15orf41 NM_001130010 exon8 c.T518C p.L173P ACTTGCTTCTAGA . 150.0 6.0 210.0 0.0 . 24 . . Atlas-SNP CHST14 113189 hgsc.bcm.edu hg19 15 40764276 40764276 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CHST14 NM_130468 exon1 c.T864C p.P288P CCAGCCTTGTGCC . 77.0 4.0 155.0 0.0 . 19 . . Atlas-SNP LTK 4058 hgsc.bcm.edu hg19 15 41799394 41799394 + Silent SNP G G C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . LTK NM_002344 exon11 c.C1440G p.A480A ATTGGGGGCTGTC . 77.0 35.0 117.0 0.0 . 117 . . Atlas-SNP DUOX2 50506 hgsc.bcm.edu hg19 15 45401796 45401796 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DUOX2 NM_014080 exon11 c.T1160C p.V387A TCATTCACCTCCT . 77.0 4.0 142.0 0.0 . 137 . . Atlas-SNP CEP152 22995 hgsc.bcm.edu hg19 15 49090248 49090248 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CEP152 NM_014985 exon3 c.T88C p.L30L GCTGCAACTGAGT . 55.0 4.0 97.0 0.0 . 145 . . Atlas-SNP SHC4 399694 hgsc.bcm.edu hg19 15 49176517 49176517 + Missense_Mutation SNP C C A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SHC4 NM_203349 exon4 c.G768T p.Q256H TGAAAACTGAAGA . 67.0 6.0 117.0 0.0 . 70 . . Atlas-SNP AP4E1 23431 hgsc.bcm.edu hg19 15 51289911 51289911 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . AP4E1 NM_007347 exon18 c.A2735G p.E912G CTACTGAATACAT . 44.0 4.0 85.0 0.0 . 78 . . Atlas-SNP UNC13C 440279 hgsc.bcm.edu hg19 15 54825124 54825124 + Silent SNP T T A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . UNC13C NM_001080534 exon24 c.T5556A p.V1852V CCAGGTTATAATT . 55.0 18.0 96.0 0.0 . 674 . . Atlas-SNP ALDH1A2 8854 hgsc.bcm.edu hg19 15 58306387 58306387 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ALDH1A2 NM_003888 exon2 c.A210G p.Q70Q TGCTTCTTGAACT . 102.0 5.0 191.0 0.0 . 69 . . Atlas-SNP ADAM10 102 hgsc.bcm.edu hg19 15 58919930 58919930 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ADAM10 NM_001110 exon10 c.T1329C p.V443V CTCAAGAACTTGG . 90.0 4.0 118.0 0.0 . 59 . . Atlas-SNP VPS13C 54832 hgsc.bcm.edu hg19 15 62214150 62214150 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . VPS13C NM_020821 exon55 c.T7058C p.L2353P ACATCAAGCCTTA . 96.0 4.0 141.0 0.0 . 506 . . Atlas-SNP HERC1 8925 hgsc.bcm.edu hg19 15 63966643 63966643 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . HERC1 NM_003922 exon38 c.A7744G p.R2582G ATGCTCTCTTTAT . 84.0 4.0 200.0 0.0 . 624 . . Atlas-SNP HERC1 8925 hgsc.bcm.edu hg19 15 64039146 64039146 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . HERC1 NM_003922 exon12 c.G2491A p.D831N TTGAGTCCATCAG . 98.0 4.0 141.0 0.0 . 624 . . Atlas-SNP DENND4A 10260 hgsc.bcm.edu hg19 15 65968921 65968921 + Missense_Mutation SNP C C G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DENND4A NM_001144823 exon24 c.G4228C p.E1410Q TAGATTCAGAATC . 120.0 5.0 181.0 0.0 . 217 . . Atlas-SNP NOX5 79400 hgsc.bcm.edu hg19 15 69341315 69341315 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NOX5 NM_024505 exon14 c.T1916C p.I639T TCTGGATCAACAG . 72.0 4.0 94.0 0.0 . 60 . . Atlas-SNP PEAK1 0 hgsc.bcm.edu hg19 15 77473310 77473310 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . . NM_024776 exon5 c.A959G p.Y320C TCCTCATAACCAT . 89.0 4.0 155.0 0.0 . . . . Atlas-SNP PEAK1 0 hgsc.bcm.edu hg19 15 77473962 77473962 + Missense_Mutation SNP C C G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . . NM_024776 exon5 c.G307C p.G103R TCCACCCTATGAT . 124.0 44.0 197.0 0.0 . . . . Atlas-SNP SH2D7 646892 hgsc.bcm.edu hg19 15 78393469 78393469 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SH2D7 NM_001101404 exon5 c.C874T p.P292S AACAGGCCTGATG . 67.0 43.0 115.0 0.0 . 26 . . Atlas-SNP HDGFRP3 0 hgsc.bcm.edu hg19 15 83832756 83832756 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . HDGFRP3 NM_016073 exon2 c.T156C p.H52H CGTTTCATGGGTG . 85.0 4.0 101.0 0.0 . 17 . . Atlas-SNP POLG 5428 hgsc.bcm.edu hg19 15 89864157 89864157 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . POLG NM_002693 exon18 c.A2821G p.I941V GGCTGATGCCCAC . 50.0 4.0 136.0 0.0 . 75 . . Atlas-SNP MCTP2 55784 hgsc.bcm.edu hg19 15 94882652 94882652 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc MCTP2,NS,carcinoma,0,1 MCTP2 NM_001159643 exon4 c.A771G p.L257L AAAGCTACGTGTG . 48.0 2.0 96.0 0.0 . 122 . . Atlas-SNP DECR2 26063 hgsc.bcm.edu hg19 16 457501 457501 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc DECR2_ENST00000397710,NS,carcinoma,0,2 DECR2 NM_020664 exon4 c.T278C p.V93A CAGCTGTCATGGC . 49.0 2.0 164.0 1.0 . 47 . . Atlas-SNP TSC2 7249 hgsc.bcm.edu hg19 16 2107122 2107122 + Missense_Mutation SNP T T G rs45517131 alternate_allele TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TSC2 NM_001114382 exon9 c.T791G p.L264R ACCTCCTTGGCAC . 92.0 5.0 251.0 0.0 . 364 . . Atlas-SNP METTL22 79091 hgsc.bcm.edu hg19 16 8735035 8735035 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . METTL22 NM_024109 exon7 c.T820C p.C274R GACCTCTGCACAG . 60.0 4.0 238.0 0.0 . 23 . . Atlas-SNP ACSM1 116285 hgsc.bcm.edu hg19 16 20638583 20638583 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ACSM1 NM_052956 exon10 c.A1355G p.D452G CCTCTGTCCCCAG . 63.0 4.0 204.0 0.0 . 118 . . Atlas-SNP USP31 57478 hgsc.bcm.edu hg19 16 23093795 23093795 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . USP31 NM_020718 exon12 c.T1914C p.P638P CACATCAGGCAGA . 69.0 4.0 186.0 0.0 . 122 . . Atlas-SNP TNRC6A 27327 hgsc.bcm.edu hg19 16 24834278 24834278 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TNRC6A NM_014494 exon24 c.T5457C p.A1819A AAATGCTCTGGTC . 67.0 4.0 181.0 0.0 . 171 . . Atlas-SNP CORO1A 11151 hgsc.bcm.edu hg19 16 30199817 30199817 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CORO1A NM_007074 exon10 c.A1201G p.S401G CCAAAGAGCCGGG . 89.0 4.0 224.0 0.0 . 36 . . Atlas-SNP SIAH1 6477 hgsc.bcm.edu hg19 16 48395979 48395979 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc SIAH1_ENST00000356721,NS,malignant_melanoma,0,2 SIAH1 NM_001006610 exon2 c.T454C p.C152R ACTCACAGAGCTC . 47.0 2.0 141.0 0.0 . 33 . . Atlas-SNP BRD7 29117 hgsc.bcm.edu hg19 16 50367608 50367608 + Missense_Mutation SNP C C A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . BRD7 NM_013263 exon8 c.G888T p.K296N GTCTTTCCTGAAA . 50.0 35.0 131.0 0.0 . 61 . . Atlas-SNP BRD7 29117 hgsc.bcm.edu hg19 16 50367609 50367609 + Splice_Site SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . BRD7 NM_001173984 exon9 c.888-1G>A . TCTTTCCTGAAAA . 49.0 35.0 129.0 0.0 . 61 . . Atlas-SNP RBL2 5934 hgsc.bcm.edu hg19 16 53496562 53496562 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RBL2 NM_005611 exon11 c.T1555C p.L519L ATGGATTTATCTG . 65.0 4.0 181.0 0.0 . 115 . . Atlas-SNP IRX5 10265 hgsc.bcm.edu hg19 16 54966777 54966777 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . IRX5 NM_001252197 exon2 c.A617G p.K206R CCCAGAAGCCCGA . 91.0 4.0 251.0 0.0 . 41 . . Atlas-SNP TMED6 146456 hgsc.bcm.edu hg19 16 69381728 69381728 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TMED6 NM_144676 exon3 c.A452G p.E151G TTTCTTTCCTTCT . 123.0 6.0 381.0 0.0 . 19 . . Atlas-SNP AP1G1 164 hgsc.bcm.edu hg19 16 71779499 71779499 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . AP1G1 NM_001030007 exon19 c.A1758G p.R586R AGGCATTCTCTCA . 79.0 4.0 195.0 0.0 . 83 . . Atlas-SNP AP1G1 164 hgsc.bcm.edu hg19 16 71798318 71798318 + Nonsense_Mutation SNP C C A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . AP1G1 NM_001030007 exon10 c.G862T p.G288X CATTTCCTACATT . 85.0 65.0 255.0 0.0 . 83 . . Atlas-SNP ZNF469 84627 hgsc.bcm.edu hg19 16 88505541 88505541 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZNF469 NM_001127464 exon2 c.A11579G p.K3860R AGAGGAAGGACAG . 57.0 4.0 192.0 0.0 . 121 . . Atlas-SNP ARRB2 409 hgsc.bcm.edu hg19 17 4624255 4624255 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ARRB2 NM_001257328 exon15 c.A1214G p.D405G CAGATGATGACAT . 97.0 4.0 197.0 0.0 . 30 . . Atlas-SNP PITPNM3 83394 hgsc.bcm.edu hg19 17 6377793 6377793 + Missense_Mutation SNP A A C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PITPNM3 NM_031220 exon10 c.T1217G p.L406R AGGACCAGGCCCA . 115.0 5.0 201.0 0.0 . 91 . . Atlas-SNP ASGR2 433 hgsc.bcm.edu hg19 17 7011175 7011175 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ASGR2 NM_080912 exon5 c.A404G p.Q135R TGCTGCTGTTTCT . 120.0 6.0 195.0 0.0 . 38 . . Atlas-SNP TMEM95 339168 hgsc.bcm.edu hg19 17 7258602 7258602 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TMEM95 NM_198154 exon1 c.T79C p.L27L CACGACTTGTCAG . 68.0 5.0 123.0 0.0 . 11 . . Atlas-SNP KCNJ18 100134444 hgsc.bcm.edu hg19 17 21319654 21319654 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . . NM_001194958 exon3 c.G1000A p.E334K TTCGAGGAGAAGA . 169.0 8.0 294.0 0.0 . . . . Atlas-SNP NF1 4763 hgsc.bcm.edu hg19 17 29559883 29559883 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NF1 NM_000267 exon26 c.T3480C p.G1160G CAGTGGTCTCATG . 71.0 4.0 120.0 0.0 . 1586 . . Atlas-SNP UNC45B 146862 hgsc.bcm.edu hg19 17 33495162 33495162 + Missense_Mutation SNP C C G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . UNC45B NM_001267052 exon10 c.C1234G p.L412V TTTGACCTGGGCA . 121.0 53.0 241.0 0.0 . 133 . . Atlas-SNP KRTAP4-6 81871 hgsc.bcm.edu hg19 17 39296198 39296198 + Missense_Mutation SNP T T A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . KRTAP4-6 NM_030976 exon1 c.A542T p.H181L GTGGTGTGGCAGG . 181.0 65.0 316.0 0.0 . 46 . . Atlas-SNP DNAJC7 7266 hgsc.bcm.edu hg19 17 40128753 40128753 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DNAJC7 NM_003315 exon14 c.T1483C p.X495Q TTCATTAGCCAAA . 72.0 4.0 140.0 0.0 . 51 . . Atlas-SNP EZH1 2145 hgsc.bcm.edu hg19 17 40857131 40857131 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . EZH1 NM_001991 exon17 c.A1910G p.E637G ATGAATTCGTTCT . 97.0 5.0 135.0 0.0 . 62 . . Atlas-SNP FMNL1 752 hgsc.bcm.edu hg19 17 43317843 43317843 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . FMNL1 NM_005892 exon12 c.A1081G p.R361G GGACAGAGGCTTC . 81.0 4.0 151.0 0.0 . 78 . . Atlas-SNP CDC27 996 hgsc.bcm.edu hg19 17 45247316 45247316 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CDC27 NM_001114091 exon4 c.G344A p.C115Y GTAAAGCAAGCTG . 60.0 4.0 84.0 0.0 . 337 . . Atlas-SNP COL1A1 1277 hgsc.bcm.edu hg19 17 48271982 48271982 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . COL1A1 NM_000088 exon22 c.A1467G p.G489G ACCAGGTCCACCC . 47.0 4.0 108.0 0.0 . 158 . . Atlas-SNP KIF2B 84643 hgsc.bcm.edu hg19 17 51901304 51901304 + Nonsense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc KIF2B,colon,carcinoma,0,1 KIF2B NM_032559 exon1 c.C910T p.Q304X TATGGGCAGACGG . 61.0 3.0 121.0 0.0 . 254 . . Atlas-SNP PRR11 55771 hgsc.bcm.edu hg19 17 57262914 57262914 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PRR11 NM_018304 exon4 c.A393G p.E131E CCAGGAAGCACTG . 99.0 4.0 177.0 0.0 . 36 . . Atlas-SNP ABCA6 23460 hgsc.bcm.edu hg19 17 67119418 67119418 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ABCA6 NM_080284 exon10 c.A1398G p.E466E TACTGGTTCAAAA . 59.0 4.0 77.0 0.0 . 210 . . Atlas-SNP ABCA10 10349 hgsc.bcm.edu hg19 17 67189275 67189275 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc ABCA10,NS,carcinoma,0,1 ABCA10 NM_080282 exon16 c.A1756G p.M586V CATCCATGAATTG . 48.0 2.0 72.0 0.0 . 209 . . Atlas-SNP SDK2 54549 hgsc.bcm.edu hg19 17 71346476 71346476 + Missense_Mutation SNP T T C rs372386732 alternate_allele TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SDK2 NM_001144952 exon43 c.A5938G p.M1980V TCATCATCTCGCT . 90.0 4.0 154.0 0.0 . 219 . . Atlas-SNP RAB37 326624 hgsc.bcm.edu hg19 17 72741169 72741169 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RAB37 NM_001163989 exon8 c.A527G p.E176G TCCTGGAGACCAG . 87.0 4.0 171.0 0.0 . 69 . . Atlas-SNP EMILIN2 84034 hgsc.bcm.edu hg19 18 2890914 2890914 + Missense_Mutation SNP G G T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . EMILIN2 NM_032048 exon4 c.G789T p.K263N CATCAAGTCTGAA . 38.0 19.0 52.0 0.0 . 97 . . Atlas-SNP LAMA1 284217 hgsc.bcm.edu hg19 18 7034666 7034666 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . LAMA1 NM_005559 exon14 c.A1863G p.T621T AGCCTGTGTGCTT . 86.0 5.0 110.0 0.0 . 458 . . Atlas-SNP SPIRE1 56907 hgsc.bcm.edu hg19 18 12453068 12453068 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SPIRE1 NM_001128626 exon14 c.A1846G p.R616G CTTACCTCTTACA . 91.0 4.0 126.0 0.0 . 120 . . Atlas-SNP ANKRD30B 374860 hgsc.bcm.edu hg19 18 14748609 14748609 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ANKRD30B NM_001145029 exon1 c.T191C p.V64A AGCCCGTCAACCT . 77.0 4.0 135.0 0.0 . 237 . . Atlas-SNP GREB1L 80000 hgsc.bcm.edu hg19 18 19100763 19100763 + Missense_Mutation SNP A A C rs201565664 bycluster TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . GREB1L NM_001142966 exon32 c.A5587C p.K1863Q GATCTTAAGAAAT . 87.0 9.0 106.0 0.0 . 69 . . Atlas-SNP SYT4 6860 hgsc.bcm.edu hg19 18 40853607 40853607 + Nonsense_Mutation SNP C C A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SYT4 NM_020783 exon2 c.G787T p.G263X CAATTCCCGAGAG . 131.0 57.0 217.0 0.0 . 162 . . Atlas-SNP DYM 54808 hgsc.bcm.edu hg19 18 46906097 46906097 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DYM NM_017653 exon4 c.T225C p.G75G TAGTGCACCAAGA . 96.0 4.0 116.0 0.0 . 52 . . Atlas-SNP ATP8B3 148229 hgsc.bcm.edu hg19 19 1785272 1785272 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ATP8B3 NM_138813 exon27 c.A3418G p.T1140A GGGCGGTCCAGTA . 63.0 5.0 130.0 0.0 . 108 . . Atlas-SNP REXO1 57455 hgsc.bcm.edu hg19 19 1827477 1827477 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . REXO1 NM_020695 exon2 c.A1311G p.P437P CGAAGATGGCTTC . 34.0 4.0 60.0 0.0 . 55 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9087298 9087298 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MUC16 NM_024690 exon1 c.C4517T p.T1506I GCACTGGTATCTG . 66.0 28.0 153.0 0.0 . 4315 . . Atlas-SNP ICAM3 3385 hgsc.bcm.edu hg19 19 10449552 10449552 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ICAM3 NM_002162 exon2 c.T149C p.F50S TTCACAAACAGGG . 69.0 6.0 101.0 0.0 . 29 . . Atlas-SNP ZNF439 90594 hgsc.bcm.edu hg19 19 11978999 11978999 + Missense_Mutation SNP A A G rs147858709 alternate_allele TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc ZNF439,upper_leg,malignant_melanoma,0,1 ZNF439 NM_152262 exon3 c.A1115G p.H372R AAAGACATGAAAA . 46.0 3.0 65.0 0.0 . 67 . . Atlas-SNP ZNF100 163227 hgsc.bcm.edu hg19 19 21909685 21909685 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc ZNF100,NS,carcinoma,0,1 ZNF100 NM_173531 exon5 c.A1429G p.M477V GAATCATCTTATG . 20.0 2.0 44.0 1.0 . 62 . . Atlas-SNP ZNF681 148213 hgsc.bcm.edu hg19 19 23927409 23927409 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZNF681 NM_138286 exon4 c.T943C p.C315R TGCCACATTCCTT . 82.0 4.0 121.0 0.0 . 76 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38979854 38979854 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RYR1 NM_001042723 exon35 c.T5585C p.I1862T AACAGATCTTGAA . 75.0 4.0 134.0 0.0 . 708 . . Atlas-SNP TMEM145 284339 hgsc.bcm.edu hg19 19 42820704 42820704 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TMEM145 NM_173633 exon9 c.A718G p.K240E AGTGTGAAGATCT . 100.0 4.0 254.0 0.0 . 55 . . Atlas-SNP MEGF8 1954 hgsc.bcm.edu hg19 19 42866592 42866592 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MEGF8 NM_001271938 exon34 c.A5901G p.G1967G CATTGGACGCAAT . 72.0 4.0 91.0 0.0 . 358 . . Atlas-SNP PSG7 5676 hgsc.bcm.edu hg19 19 43430131 43430131 + Nonsense_Mutation SNP G G T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . . NM_001206650 exon4 c.C671A p.S224X TGTCCTGAATGGT . 90.0 43.0 171.0 0.0 . . . . Atlas-SNP ZNF285 26974 hgsc.bcm.edu hg19 19 44891202 44891202 + Missense_Mutation SNP C C G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc ZNF285,NS,carcinoma,0,2 ZNF285 NM_152354 exon4 c.G1205C p.C402S TCACTGCATTTGT . 37.0 3.0 66.0 0.0 . 86 . . Atlas-SNP ZNF285 26974 hgsc.bcm.edu hg19 19 44891217 44891217 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc ZNF285,NS,carcinoma,0,2 ZNF285 NM_152354 exon4 c.A1190G p.E397G GGCTTCTCTCCAG . 35.0 3.0 67.0 0.0 . 86 . . Atlas-SNP PVRL2 5819 hgsc.bcm.edu hg19 19 45389426 45389426 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PVRL2 NM_001042724 exon8 c.A1297G p.S433G GAGCACAGCCCAC . 82.0 4.0 143.0 0.0 . 58 . . Atlas-SNP GRIN2D 2906 hgsc.bcm.edu hg19 19 48908506 48908506 + Silent SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . GRIN2D NM_000836 exon3 c.G981A p.V327V CGTAGTGGCCAGA . 14.0 5.0 35.0 0.0 . 76 . . Atlas-SNP DKKL1 27120 hgsc.bcm.edu hg19 19 49868005 49868005 + Silent SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DKKL1 NM_014419 exon2 c.C177T p.F59F ACTTTTCCTGAAA . 91.0 4.0 160.0 0.0 . 23 . . Atlas-SNP NUP62 23636 hgsc.bcm.edu hg19 19 50412103 50412103 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NUP62 NM_153719 exon3 c.G962A p.G321E GCCGCCCCTGCAG . 39.0 13.0 95.0 0.0 . 50 . . Atlas-SNP MYH14 79784 hgsc.bcm.edu hg19 19 50775221 50775221 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MYH14 NM_001145809 exon26 c.A3287G p.D1096G TCGCAGACATGGA . 68.0 4.0 163.0 0.0 . 261 . . Atlas-SNP ETFB 2109 hgsc.bcm.edu hg19 19 51857546 51857546 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc ETFB_ENST00000309244,NS,carcinoma,0,2 ETFB NM_001014763 exon1 c.A347G p.D116G GTCCTGTCAGGCT . 59.0 3.0 114.0 0.0 . 46 . . Atlas-SNP NCR1 9437 hgsc.bcm.edu hg19 19 55421416 55421416 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NCR1 NM_001145458 exon5 c.A673G p.T225A GACCCCACCTTTC . 80.0 4.0 158.0 0.0 . 60 . . Atlas-SNP ZNF835 90485 hgsc.bcm.edu hg19 19 57175497 57175497 + Missense_Mutation SNP G G T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZNF835 NM_001005850 exon2 c.C1070A p.T357N TCTCCGGTGTGCG . 74.0 44.0 138.0 0.0 . 106 . . Atlas-SNP PEG3 5178 hgsc.bcm.edu hg19 19 57326944 57326944 + Missense_Mutation SNP G G T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PEG3 NM_001146184 exon9 c.C2866A p.P956T CAAAAGGCAGAGA . 119.0 43.0 283.0 0.0 . 414 . . Atlas-SNP ZSCAN22 342945 hgsc.bcm.edu hg19 19 58846297 58846297 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZSCAN22 NM_181846 exon2 c.T129C p.A43A CATTGCTCACTCT . 93.0 4.0 131.0 0.0 . 47 . . Atlas-SNP ZNF343 79175 hgsc.bcm.edu hg19 20 2465247 2465247 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZNF343 NM_024325 exon6 c.T360C p.C120C CTGCTGACAGGAG . 81.0 4.0 101.0 0.0 . 47 . . Atlas-SNP TMC2 117532 hgsc.bcm.edu hg19 20 2539363 2539363 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TMC2 NM_080751 exon3 c.A344G p.K115R CCCCAAAGAGGGA . 94.0 4.0 148.0 0.0 . 121 . . Atlas-SNP PTPRA 5786 hgsc.bcm.edu hg19 20 3017865 3017865 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PTPRA NM_002836 exon27 c.A2264G p.E755G AAGCAGAGGGGAT . 87.0 5.0 171.0 0.0 . 75 . . Atlas-SNP ASXL1 171023 hgsc.bcm.edu hg19 20 31024706 31024706 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ASXL1 NM_015338 exon12 c.T4191C p.G1397G GGTGGGTCACTTG . 58.0 5.0 138.0 0.0 . 1114 . . Atlas-SNP E2F1 1869 hgsc.bcm.edu hg19 20 32265257 32265257 + Missense_Mutation SNP T T A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . E2F1 NM_005225 exon5 c.A815T p.Q272L TGGAGCTGGGTCT . 111.0 47.0 182.0 0.0 . 41 . . Atlas-SNP LBP 3929 hgsc.bcm.edu hg19 20 36974925 36974925 + Silent SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . LBP NM_004139 exon1 c.G6A p.G2G GATGGGGGCCTTG . 56.0 25.0 80.0 0.0 . 60 . . Atlas-SNP NCOA3 8202 hgsc.bcm.edu hg19 20 46275954 46275954 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NCOA3 NM_181659 exon18 c.A3390G p.G1130G TCAGGGACAATCA . 90.0 52.0 178.0 0.0 . 156 . . Atlas-SNP STAU1 6780 hgsc.bcm.edu hg19 20 47740949 47740949 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . STAU1 NM_017453 exon7 c.A785G p.K262R CTAGGCTTTACTC . 65.0 4.0 112.0 0.0 . 54 . . Atlas-SNP DPM1 8813 hgsc.bcm.edu hg19 20 49571794 49571794 + Missense_Mutation SNP C C A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc DPM1,right_upper_lobe,carcinoma,0,1 DPM1 NM_003859 exon2 c.G190T p.D64Y CATCATCTATGAT . 44.0 2.0 94.0 0.0 . 24 . . Atlas-SNP CHODL 140578 hgsc.bcm.edu hg19 21 19632556 19632556 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CHODL NM_024944 exon4 c.C587T p.T196I ATCTTACAAATCA . 59.0 4.0 92.0 0.0 . 54 . . Atlas-SNP MORC3 23515 hgsc.bcm.edu hg19 21 37747486 37747486 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MORC3 NM_015358 exon17 c.T2712C p.A904A GCTGGCTATGATT . 71.0 4.0 83.0 0.0 . 78 . . Atlas-SNP DSCAM 1826 hgsc.bcm.edu hg19 21 41455834 41455834 + Splice_Site SNP C C G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DSCAM NM_001271534 exon25 c.4231+1G>C . TTATTACCTCTGA . 87.0 34.0 131.0 0.0 . 347 . . Atlas-SNP DSCAM 1826 hgsc.bcm.edu hg19 21 41455835 41455835 + Nonsense_Mutation SNP C C A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DSCAM NM_001271534 exon24 c.G4231T p.G1411X TATTACCTCTGAT . 86.0 35.0 134.0 0.0 . 347 . . Atlas-SNP PKNOX1 5316 hgsc.bcm.edu hg19 21 44424541 44424541 + Missense_Mutation SNP A A C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . PKNOX1 NM_004571 exon2 c.A50C p.Q17P GGCAACAGGTGAG . 85.0 4.0 117.0 0.0 . 40 . . Atlas-SNP C21orf58 54058 hgsc.bcm.edu hg19 21 47731472 47731472 + Missense_Mutation SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . C21orf58 NM_058180 exon6 c.C619T p.P207S CAGGAGGCTGGGG . 86.0 4.0 147.0 0.0 . 25 . . Atlas-SNP DIP2A 23181 hgsc.bcm.edu hg19 21 47910539 47910539 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . DIP2A NM_206891 exon3 c.A190G p.N64D GCAGAGAATAGAA . 117.0 5.0 214.0 0.0 . 332 . . Atlas-SNP CLTCL1 8218 hgsc.bcm.edu hg19 22 19263298 19263298 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CLTCL1 NM_001835 exon2 c.A98G p.E33G TCAGATTCCATGG . 85.0 4.0 157.0 0.0 . 115 . . Atlas-SNP CHEK2 11200 hgsc.bcm.edu hg19 22 29130547 29130547 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CHEK2 NM_145862 exon2 c.T163C p.S55P AGCTGGAGTGAGA . 90.0 4.0 204.0 0.0 . 438 . . Atlas-SNP RHBDD3 25807 hgsc.bcm.edu hg19 22 29656351 29656351 + Missense_Mutation SNP G G T rs375477818 alternate_allele TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . RHBDD3 NM_012265 exon6 c.C947A p.A316E CATGGTGCGCTCT . 84.0 4.0 171.0 0.0 . 17 . . Atlas-SNP SEC14L4 284904 hgsc.bcm.edu hg19 22 30890136 30890136 + Splice_Site SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SEC14L4 NM_174977 exon8 c.580+1G>A . GGCTTACCTCGAA . 91.0 4.0 185.0 0.0 . 43 . . Atlas-SNP ELFN2 114794 hgsc.bcm.edu hg19 22 37771035 37771035 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ELFN2 NM_052906 exon3 c.T540C p.C180C CAGCTCACACACC . 94.0 4.0 160.0 0.0 . 89 . . Atlas-SNP TAB1 10454 hgsc.bcm.edu hg19 22 39824030 39824030 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TAB1 NM_153497 exon10 c.A1149G p.A383A AGCTGCAGGAGGA . 63.0 4.0 91.0 0.0 . 36 . . Atlas-SNP TUBGCP6 85378 hgsc.bcm.edu hg19 22 50656199 50656199 + Missense_Mutation SNP C C T novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . TUBGCP6 NM_020461 exon25 c.G5426A p.R1809H TTGATGCGCAGCA . 61.0 4.0 176.0 0.0 . 132 . . Atlas-SNP SCO2 9997 hgsc.bcm.edu hg19 22 50962276 50962276 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SCO2 NM_001169111 exon2 c.T565C p.L189L GACCCAACAGTCT . 93.0 4.0 180.0 0.0 . 38 . . Atlas-SNP ARSE 415 hgsc.bcm.edu hg19 X 2876322 2876322 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ARSE NM_000047 exon3 c.A178G p.T60A TCATGGTGTTGTT . 67.0 5.0 207.0 0.0 . 43 . . Atlas-SNP GPM6B 2824 hgsc.bcm.edu hg19 X 13803853 13803853 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . GPM6B NM_001001995 exon3 c.T256C p.S86P CCCCGGAGAAGCA . 119.0 5.0 352.0 0.0 . 46 . . Atlas-SNP CXorf38 159013 hgsc.bcm.edu hg19 X 40489973 40489973 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . CXorf38 NM_144970 exon6 c.T854C p.L285P TTTCTAAGATCCT . 67.0 4.0 199.0 0.0 . 29 . . Atlas-SNP EFHC2 80258 hgsc.bcm.edu hg19 X 44109537 44109537 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . EFHC2 NM_025184 exon5 c.T761C p.F254S CACAAGAAGTAAT . 60.0 4.0 184.0 0.0 . 81 . . Atlas-SNP ZNF81 347344 hgsc.bcm.edu hg19 X 47775710 47775710 + Silent SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . ZNF81 NM_007137 exon5 c.T1665C p.V555V CTATGTTTGTGCT . 86.0 4.0 211.0 0.0 . 60 . . Atlas-SNP NHSL2 340527 hgsc.bcm.edu hg19 X 71358563 71358563 + Missense_Mutation SNP T T C novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . NHSL2 NM_001013627 exon6 c.T1165C p.S389P ACCTTCTCCACTT . 107.0 5.0 318.0 0.0 . 148 . . Atlas-SNP IL13RA1 3597 hgsc.bcm.edu hg19 X 117874980 117874980 + Missense_Mutation SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . IL13RA1 NM_001560 exon2 c.A89G p.E30G GAACAGAAACTCA . 37.0 4.0 129.0 0.0 . 41 . . Atlas-SNP SLC25A5 292 hgsc.bcm.edu hg19 X 118604919 118604919 + Silent SNP A A G novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SLC25A5 NM_001152 exon4 c.A795G p.E265E TGATGAAGGAGGC . 94.0 4.0 283.0 0.0 . 33 . . Atlas-SNP TENM1 10178 hgsc.bcm.edu hg19 X 123654550 123654550 + Silent SNP G G A novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . . NM_001163278 exon18 c.C3118T p.L1040L TCCGTAGCAGGGT . 79.0 56.0 325.0 1.0 . . . . Atlas-SNP AXIN1 8312 hgsc.bcm.edu hg19 16 364598 364598 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . AXIN1 NM_003502 exon3 c.965delA p.E322fs . . 37.0 25.0 112.0 0.0 . 290 . . Atlas-Indel,Pindel MDC1 9656 hgsc.bcm.edu hg19 6 30680046 30680046 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . MDC1 NM_014641 exon5 c.1674delA p.G558fs . . 214.0 41.0 245.0 0.0 . 218 . . Atlas-Indel,Pindel SUPT16H 11198 hgsc.bcm.edu hg19 14 21829290 21829311 + Frame_Shift_Del DEL TAATAATTCGGAAAGCATTCTG TAATAATTCGGAAAGCATTCTG - novel TCGA-DD-A39Z-01A-11D-A20W-10 TCGA-DD-A39Z-11A-21D-A20W-10 TAATAATTCGGAAAGCATTCTG TAATAATTCGGAAAGCATTCTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5d662f8-35c9-4f38-9e23-10cd6e522078 7dbbd52e-3044-4bd2-8839-4471df1bd1dc . SUPT16H NM_007192 exon16 c.1856_1877del p.619_626del . . 91.0 15.0 0.0 0.0 . 84 . . Pindel