Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ROR1 4919 hgsc.bcm.edu hg19 1 64644486 64644486 + Missense_Mutation SNP G G A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . ROR1 NM_005012 exon9 c.G2762A p.G921E TACTAGGAGACGC . 197.0 83.0 236.0 0.0 . 113 . . Atlas-SNP GBP5 115362 hgsc.bcm.edu hg19 1 89735097 89735097 + Missense_Mutation SNP G G C novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . GBP5 NM_052942 exon3 c.C142G p.R48G CAGTGCGATAGAG . 378.0 150.0 344.0 0.0 . 65 . . Atlas-SNP FNDC7 163479 hgsc.bcm.edu hg19 1 109261510 109261510 + Missense_Mutation SNP T T G novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . FNDC7 NM_001144937 exon4 c.T437G p.I146S TGTCCATTATGCG . 197.0 75.0 227.0 0.0 . 113 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152084224 152084224 + Missense_Mutation SNP T T C novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . TCHH NM_007113 exon3 c.A1469G p.K490R TCGAGCTTCAGCC . 155.0 15.0 133.0 0.0 . 275 . . Atlas-SNP CTSE 1510 hgsc.bcm.edu hg19 1 206325312 206325312 + Silent SNP A A C novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . CTSE NM_001910 exon5 c.A537C p.A179A GGATGCAGAGTTT . 288.0 112.0 253.0 0.0 . 72 . . Atlas-SNP URB2 9816 hgsc.bcm.edu hg19 1 229794870 229794870 + Missense_Mutation SNP A A C novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . URB2 NM_014777 exon10 c.A4401C p.K1467N TGTGAAAAGTCTG . 85.0 5.0 87.0 0.0 . 152 . . Atlas-SNP TRIM67 440730 hgsc.bcm.edu hg19 1 231337125 231337125 + Missense_Mutation SNP C C T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . TRIM67 NM_001004342 exon5 c.C1396T p.R466C ATCAAGCGCGTCC . 133.0 48.0 113.0 0.0 . 160 . . Atlas-SNP LTBP1 4052 hgsc.bcm.edu hg19 2 33172789 33172789 + Missense_Mutation SNP A A G novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . LTBP1 NM_206943 exon1 c.A398G p.K133R TCACCAAACAAGG . 70.0 19.0 56.0 0.0 . 317 . . Atlas-SNP DYSF 8291 hgsc.bcm.edu hg19 2 71755439 71755439 + Missense_Mutation SNP G G T rs144202114 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 DYSF,NS,carcinoma,0,1 DYSF NM_001130982 exon14 c.G1288T p.V430L GATGCCGTGATGG . 106.0 43.0 107.0 0.0 . 536 . G|0.996;A|0.004 Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84777070 84777070 + Silent SNP T T C novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . DNAH6 NM_001370 exon9 c.T1374C p.N458N GGTAAATGCTGTT . 111.0 18.0 107.0 0.0 . 194 . . Atlas-SNP ZNF142 7701 hgsc.bcm.edu hg19 2 219513586 219513586 + Missense_Mutation SNP C C A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . ZNF142 NM_001105537 exon6 c.G1045T p.D349Y CAAAATCACAGTG . 143.0 53.0 97.0 0.0 . 190 . . Atlas-SNP ITGA9 3680 hgsc.bcm.edu hg19 3 37695227 37695227 + Missense_Mutation SNP G G A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 ITGA9,brain,glioma,0,1 ITGA9 NM_002207 exon17 c.G1862A p.R621H ATTGCCGTTCAGA . 164.0 61.0 179.0 0.0 . 98 . . Atlas-SNP HYAL3 8372 hgsc.bcm.edu hg19 3 50332788 50332788 + Silent SNP G G A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . HYAL3 NM_001200030 exon2 c.C246T p.P82P AAAGTAGGGATAG . 61.0 18.0 86.0 0.0 . 34 . . Atlas-SNP KALRN 8997 hgsc.bcm.edu hg19 3 123987858 123987858 + Missense_Mutation SNP C C T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . KALRN NM_003947 exon5 c.C719T p.A240V TGAAGGCCCCTGT . 230.0 17.0 195.0 0.0 . 556 . . Atlas-SNP MAN2B2 23324 hgsc.bcm.edu hg19 4 6595009 6595009 + Missense_Mutation SNP G G A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . MAN2B2 NM_015274 exon6 c.G790A p.E264K TATGCCGAGGCCC . 112.0 7.0 125.0 0.0 . 80 . . Atlas-SNP ENOPH1 58478 hgsc.bcm.edu hg19 4 83378171 83378171 + Missense_Mutation SNP T T G novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . ENOPH1 NM_021204 exon5 c.T626G p.F209C TTTTGTTTCTGAC . 176.0 55.0 168.0 0.0 . 26 . . Atlas-SNP PCDH10 57575 hgsc.bcm.edu hg19 4 134075516 134075516 + Missense_Mutation SNP A A C novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . PCDH10 NM_032961 exon2 c.A2686C p.N896H CGAGTTAACAGGT . 174.0 59.0 183.0 0.0 . 290 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155157679 155157679 + Nonsense_Mutation SNP C C A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 DCHS2,rectum,carcinoma,0,1 DCHS2 NM_017639 exon25 c.G6760T p.E2254X CCTTCTCATTTCC . 73.0 27.0 92.0 0.0 . 594 . . Atlas-SNP ADAM29 11086 hgsc.bcm.edu hg19 4 175896738 175896738 + Missense_Mutation SNP A A C novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . ADAM29 NM_001130703 exon4 c.A62C p.Q21P ACATCCAGGATGA . 142.0 55.0 138.0 0.0 . 262 . . Atlas-SNP FCHO2 115548 hgsc.bcm.edu hg19 5 72347205 72347205 + Nonsense_Mutation SNP C C A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . FCHO2 NM_138782 exon12 c.C969A p.Y323X AGGCTACAGTATT . 85.0 16.0 118.0 0.0 . 96 . . Atlas-SNP GFM2 84340 hgsc.bcm.edu hg19 5 74026206 74026206 + Missense_Mutation SNP C C G novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . GFM2 NM_032380 exon17 c.G1605C p.M535I CTCCCCCATACCA . 133.0 53.0 139.0 0.0 . 38 . . Atlas-SNP POLK 51426 hgsc.bcm.edu hg19 5 74872759 74872759 + Splice_Site SNP G G C novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . POLK NM_016218 exon6 c.694+1G>C . AAAATGGTAAGCA . 64.0 24.0 83.0 0.0 . 123 . . Atlas-SNP PCDHA5 56143 hgsc.bcm.edu hg19 5 140203294 140203294 + Missense_Mutation SNP G G A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 PCDHA5_ENST00000529859,caecum,carcinoma,0,2 PCDHA5 NM_018908 exon1 c.G1934A p.R645H GCCACCGCCTTCT . 275.0 97.0 208.0 0.0 . 361 . . Atlas-SNP PRELID2 153768 hgsc.bcm.edu hg19 5 145176020 145176020 + Silent SNP T T G novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . PRELID2 NM_182960 exon6 c.A495C p.R165R TCCCTGTCGTAAG . 45.0 20.0 62.0 0.0 . 16 . . Atlas-SNP GLI3 2737 hgsc.bcm.edu hg19 7 42005030 42005030 + Missense_Mutation SNP T T G novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . GLI3 NM_000168 exon15 c.A3641C p.Q1214P AGGGTCTGATAGC . 85.0 24.0 76.0 0.0 . 312 . . Atlas-SNP ELN 2006 hgsc.bcm.edu hg19 7 73477959 73477959 + Missense_Mutation SNP G G A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . ELN NM_001081754 exon29 c.G1942A p.G648R CTAGTGGGAGCCG . 479.0 27.0 345.0 0.0 . 81 . . Atlas-SNP MGAM 8972 hgsc.bcm.edu hg19 7 141726934 141726934 + Silent SNP G G T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . MGAM NM_004668 exon9 c.G1002T p.A334A GCCTGCGCCAGCC . 183.0 55.0 101.0 0.0 . 767 . . Atlas-SNP RP1L1 94137 hgsc.bcm.edu hg19 8 10469481 10469481 + Silent SNP C C T rs367955605 alternate_allele TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . RP1L1 NM_178857 exon4 c.G2127A p.S709S GGTGCTCGATGAG . 113.0 45.0 90.0 0.0 . 453 . . Atlas-SNP ASB6 140459 hgsc.bcm.edu hg19 9 132400301 132400301 + Missense_Mutation SNP T T G novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . ASB6 NM_017873 exon6 c.A1034C p.N345T TCGAAGTTTTCGG . 67.0 31.0 53.0 0.0 . 31 . . Atlas-SNP FAM69B 138311 hgsc.bcm.edu hg19 9 139617874 139617874 + Missense_Mutation SNP A A C novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . FAM69B NM_152421 exon5 c.A944C p.D315A TGGCCGACCTGCA . 38.0 8.0 47.0 0.0 . 22 . . Atlas-SNP TAF3 83860 hgsc.bcm.edu hg19 10 8006861 8006861 + Missense_Mutation SNP C C T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . TAF3 NM_031923 exon3 c.C1388T p.S463L ATAACTCATGGAC . 109.0 39.0 108.0 0.0 . 93 . . Atlas-SNP ZFAND4 93550 hgsc.bcm.edu hg19 10 46111982 46111982 + Missense_Mutation SNP C C G novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . . NM_001128324 exon10 c.G2086C p.E696Q GAGTTTCTGCATA . 228.0 71.0 224.0 0.0 . . . . Atlas-SNP HTR7 3363 hgsc.bcm.edu hg19 10 92509305 92509305 + Missense_Mutation SNP C C A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . HTR7 NM_019860 exon2 c.G586T p.G196W ATTTCCCATTCTG . 137.0 52.0 92.0 0.0 . 122 . . Atlas-SNP PLEKHS1 79949 hgsc.bcm.edu hg19 10 115528632 115528632 + Missense_Mutation SNP A A G novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . PLEKHS1 NM_024889 exon6 c.A418G p.T140A AAAGCAACACAGC . 50.0 13.0 72.0 0.0 . 19 . . Atlas-SNP NLRP10 338322 hgsc.bcm.edu hg19 11 7981809 7981809 + Silent SNP G G A rs56052845 TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 NLRP10,colon,carcinoma,0,2 NLRP10 NM_176821 exon2 c.C1350T p.N450N GTAGTCGTTACTA . 65.0 21.0 69.0 0.0 . 146 . . Atlas-SNP CSRP3 8048 hgsc.bcm.edu hg19 11 19204231 19204231 + Nonsense_Mutation SNP C C A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . CSRP3 NM_003476 exon7 c.G571T p.E191X TCTTTTCCACTTG . 164.0 8.0 166.0 0.0 . 24 . . Atlas-SNP WT1 7490 hgsc.bcm.edu hg19 11 32421555 32421555 + Missense_Mutation SNP G G A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 WT1_ENST00000379079,colon,carcinoma,0,2 WT1 NM_024424 exon6 c.C1037T p.T346M ATGGGCGTTGTGT . 261.0 11.0 269.0 0.0 . 744 . . Atlas-SNP RPS6KA4 8986 hgsc.bcm.edu hg19 11 64128041 64128041 + Missense_Mutation SNP C C A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . RPS6KA4 NM_001006944 exon4 c.C439A p.L147M ATCGTGCTGGCCC . 94.0 42.0 102.0 0.0 . 85 . . Atlas-SNP OR8G5 219865 hgsc.bcm.edu hg19 11 124135110 124135110 + Missense_Mutation SNP C C A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . . NM_001005198 exon1 c.C388A p.P130T TCCTACCCTGAAT . 283.0 116.0 321.0 0.0 . . . . Atlas-SNP ITFG2 55846 hgsc.bcm.edu hg19 12 2933099 2933099 + Missense_Mutation SNP G G T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . ITFG2 NM_018463 exon11 c.G1230T p.E410D GCAGGAGCTGGGC . 85.0 33.0 83.0 0.0 . 38 . . Atlas-SNP FOXJ2 55810 hgsc.bcm.edu hg19 12 8205442 8205442 + Missense_Mutation SNP C C G novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . FOXJ2 NM_018416 exon11 c.C1721G p.T574S TGATCACTTAGTG . 69.0 28.0 62.0 0.0 . 43 . . Atlas-SNP ZDHHC17 23390 hgsc.bcm.edu hg19 12 77158072 77158072 + Missense_Mutation SNP A A G novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . ZDHHC17 NM_015336 exon1 c.A56G p.D19G AGTACGATACCGA . 51.0 18.0 66.0 0.0 . 45 . . Atlas-SNP GATC 283459 hgsc.bcm.edu hg19 12 120884359 120884359 + Missense_Mutation SNP C C T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . GATC NM_176818 exon1 c.C76T p.P26S GCGGATCCTCAGG . 58.0 6.0 54.0 0.0 . 12 . . Atlas-SNP HNF1A 6927 hgsc.bcm.edu hg19 12 121426820 121426820 + Nonsense_Mutation SNP C C T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . HNF1A NM_000545 exon2 c.C511T p.R171X AAGCAGCGAGAGG . 81.0 30.0 81.0 0.0 . 302 . . Atlas-SNP HNF1A 6927 hgsc.bcm.edu hg19 12 121431506 121431506 + Missense_Mutation SNP A A G novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 HNF1A,NS,other,0,1 HNF1A NM_000545 exon3 c.A710G p.N237S AGTGCAATAGGTA . 70.0 28.0 60.0 0.0 . 302 . . Atlas-SNP CUL4A 8451 hgsc.bcm.edu hg19 13 113898777 113898777 + Nonsense_Mutation SNP G G T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . CUL4A NM_001008895 exon12 c.G1282T p.E428X GACGAGGAGCTGG . 243.0 97.0 201.0 0.0 . 50 . . Atlas-SNP TRIP4 9325 hgsc.bcm.edu hg19 15 64701814 64701814 + Missense_Mutation SNP T T C novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . TRIP4 NM_016213 exon7 c.T830C p.I277T TCAGTATTCGAAG . 149.0 11.0 127.0 0.0 . 43 . . Atlas-SNP FURIN 5045 hgsc.bcm.edu hg19 15 91423938 91423938 + Missense_Mutation SNP C C T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . FURIN NM_002569 exon14 c.C1574T p.A525V ACTCCGCAGATGG . 114.0 41.0 137.0 0.0 . 85 . . Atlas-SNP CACNA1H 8912 hgsc.bcm.edu hg19 16 1251935 1251935 + Silent SNP G G A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . CACNA1H NM_021098 exon9 c.G1485A p.V495V TGCTGTGCAAGGC . 40.0 20.0 45.0 0.0 . 317 . . Atlas-SNP ALG1 56052 hgsc.bcm.edu hg19 16 5127503 5127503 + Missense_Mutation SNP G G A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . ALG1 NM_019109 exon5 c.G597A p.M199I TGCTATGCGAGAA . 99.0 35.0 104.0 0.0 . 35 . . Atlas-SNP SH2B1 25970 hgsc.bcm.edu hg19 16 28877909 28877909 + Missense_Mutation SNP C C T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . SH2B1 NM_001145796 exon2 c.C494T p.S165L GAGGCTCAGTCCG . 57.0 22.0 51.0 0.0 . 160 . . Atlas-SNP TMEM219 124446 hgsc.bcm.edu hg19 16 29979380 29979380 + Silent SNP C C T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . TMEM219 NM_001083613 exon4 c.C390T p.A130A CACAGCCAGGGTG . 116.0 49.0 109.0 0.0 . 10 . . Atlas-SNP CTC1 80169 hgsc.bcm.edu hg19 17 8141349 8141349 + Missense_Mutation SNP C C T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . CTC1 NM_025099 exon4 c.G647A p.R216K AATTACCTGAGCC . 83.0 24.0 76.0 0.0 . 75 . . Atlas-SNP CWC25 54883 hgsc.bcm.edu hg19 17 36977155 36977155 + Nonsense_Mutation SNP T T A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . CWC25 NM_017748 exon2 c.A190T p.K64X CTTACTTGACGGC . 146.0 51.0 122.0 0.0 . 24 . . Atlas-SNP CCR10 2826 hgsc.bcm.edu hg19 17 40831634 40831634 + Silent SNP G G A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . CCR10 NM_016602 exon2 c.C1026T p.R342R GGGCCGGCGGGGG . 43.0 20.0 31.0 0.0 . 7 . . Atlas-SNP KPNB1 3837 hgsc.bcm.edu hg19 17 45757446 45757446 + Silent SNP C C T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 KPNB1_ENST00000290158,NS,carcinoma,0,1 KPNB1 NM_002265 exon20 c.T2414T p.I805I ACATTGCTGGAGA . 111.0 8.0 110.0 0.0 . 58 . . Atlas-SNP RNF213 57674 hgsc.bcm.edu hg19 17 78341576 78341576 + Missense_Mutation SNP C C T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 RNF213_ENST00000411702,caecum,carcinoma,0,2 RNF213 NM_001256071 exon43 c.C11900T p.T3967M TGAAGACGCACGG . 48.0 2.0 65.0 0.0 . 766 . . Atlas-SNP ESCO1 114799 hgsc.bcm.edu hg19 18 19144186 19144186 + Missense_Mutation SNP G G T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . ESCO1 NM_052911 exon7 c.C1799A p.T600N TCATCAGTTTTCT . 141.0 35.0 180.0 0.0 . 89 . . Atlas-SNP ZNF521 25925 hgsc.bcm.edu hg19 18 22807281 22807281 + Missense_Mutation SNP G G T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . ZNF521 NM_015461 exon4 c.C601A p.P201T TATATGGCTTGTT . 258.0 90.0 271.0 0.0 . 269 . . Atlas-SNP CPAMD8 27151 hgsc.bcm.edu hg19 19 17115180 17115180 + Silent SNP G G A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . CPAMD8 NM_015692 exon8 c.C717T p.S239S GGGGAAGCTCATG . 99.0 27.0 103.0 0.0 . 192 . . Atlas-SNP CYP2A6 1548 hgsc.bcm.edu hg19 19 41354235 41354235 + Silent SNP G G C novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . CYP2A6 NM_000762 exon4 c.C543G p.V181V GCTGATGACATTG . 354.0 138.0 284.0 0.0 . 69 . . Atlas-SNP ZNF611 81856 hgsc.bcm.edu hg19 19 53208756 53208756 + Missense_Mutation SNP C C G novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . ZNF611 NM_030972 exon7 c.G1552C p.V518L TGAAAACCTTTTC . 138.0 60.0 143.0 0.0 . 72 . . Atlas-SNP TMC2 117532 hgsc.bcm.edu hg19 20 2582881 2582881 + Silent SNP C C T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . TMC2 NM_080751 exon11 c.C1347T p.Y449Y CATTTACTTTGTG . 236.0 73.0 252.0 0.0 . 121 . . Atlas-SNP RALY 22913 hgsc.bcm.edu hg19 20 32664559 32664559 + Missense_Mutation SNP C C T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . RALY NM_016732 exon7 c.C596T p.S199F TCAAGTCCAATAT . 88.0 38.0 91.0 0.0 . 44 . . Atlas-SNP PLTP 5360 hgsc.bcm.edu hg19 20 44531198 44531198 + Missense_Mutation SNP G G C novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . PLTP NM_006227 exon11 c.C988G p.L330V GGGCCAGGACCCG . 164.0 64.0 203.0 0.0 . 49 . . Atlas-SNP CHRNA4 1137 hgsc.bcm.edu hg19 20 61990961 61990961 + Missense_Mutation SNP G G A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . CHRNA4 NM_000744 exon2 c.C167T p.A56V ATGTTGGCCACGG . 109.0 37.0 110.0 0.0 . 98 . . Atlas-SNP LARGE 9215 hgsc.bcm.edu hg19 22 33670561 33670561 + Missense_Mutation SNP T T A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . LARGE NM_004737 exon16 c.A2123T p.H708L GGGGCATGAGGCA . 149.0 53.0 146.0 0.0 . 98 . . Atlas-SNP POLA1 5422 hgsc.bcm.edu hg19 X 24744103 24744103 + Silent SNP G G T novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . POLA1 NM_016937 exon13 c.G1305T p.V435V GCCAGTGGAAAAG . 444.0 185.0 414.0 0.0 . 117 . . Atlas-SNP IDS 3423 hgsc.bcm.edu hg19 X 148582537 148582537 + Silent SNP C C T rs201892132 bycluster TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . IDS NM_006123 exon4 c.G450A p.P150P GCTATACGGAGAA . 99.0 41.0 95.0 0.0 . 46 . . Atlas-SNP ND4 0 hgsc.bcm.edu hg19 MT 10971 10971 + Nonsense_Mutation SNP G G A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . . ENST00000361381 exon1 c.G212A p.W71X CTACCTGACTCCT . 137.0 127.0 61.0 0.0 . . . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 13225 13225 + Missense_Mutation SNP G G A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . . ENST00000361567 exon1 c.G889A p.D297N CAAAATGACATCA . 123.0 7.0 51.0 0.0 . . . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 14071 14071 + Missense_Mutation SNP A A G novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . . ENST00000361567 exon1 c.A1735G p.T579A ACCTCAACCCAAA . 166.0 8.0 54.0 0.0 . . . . Atlas-SNP CPAMD8 27151 hgsc.bcm.edu hg19 19 17115174 17115174 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . CPAMD8 NM_015692 exon8 c.724delT p.L242fs . . 106.0 26.0 113.0 0.0 . 192 . . Atlas-Indel,Pindel MLL2 8085 hgsc.bcm.edu hg19 12 49425236 49425236 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . MLL2 NM_003482 exon39 c.13253delA p.E4418fs . . 99.0 34.0 137.0 0.0 . 1173 . . Atlas-Indel,Pindel FCHO2 115548 hgsc.bcm.edu hg19 5 72347203 72347204 + Frame_Shift_Ins INS - - A novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . FCHO2 NM_138782 exon12 c.967_968insA p.Y323_S324delinsX . . 82.0 16.0 116.0 0.0 . 96 . . Atlas-INDEL SECISBP2L 9728 hgsc.bcm.edu hg19 15 49284998 49284999 + In_Frame_Ins INS - - TGGGGGTGTGTCAAATGGAAGTTG novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . SECISBP2L NM_001193489 exon18 c.2749_2750insCAACTTCCATTTGACACACCCCCA p.I917delinsQLPFDTPPI . . 162.0 14.0 190.0 0.0 . 118 . . Atlas-INDEL FKBP15 23307 hgsc.bcm.edu hg19 9 115938874 115938876 + In_Frame_Del DEL CAC CAC - novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 CAC CAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . FKBP15 NM_015258 exon21 c.2165_2167del p.722_723del . . 318.0 101.0 313.0 0.0 . 128 . . Atlas-Indel,Pindel OTUD6B 51633 hgsc.bcm.edu hg19 8 92082521 92082620 + Frame_Shift_Del DEL CATTTAAGTTTCTCGTCTTTGCAGTGGCTTTGCTTAGATCCGGTGCCGCCTTGAAGGCGGGGCTGGGTCCCAGCCGTAGCCAATGGAGCCCCGGGTGAGG CATTTAAGTTTCTCGTCTTTGCAGTGGCTTTGCTTAGATCCGGTGCCGCCTTGAAGGCGGGGCTGGGTCCCAGCCGTAGCCAATGGAGCCCCGGGTGAGG - novel TCGA-DD-A3A2-01A-11D-A20W-10 TCGA-DD-A3A2-11A-11D-A20W-10 CATTTAAGTTTCTCGTCTTTGCAGTGGCTTTGCTTAGATCCGGTGCCGCCTTGAAGGCGGGGCTGGGTCCCAGCCGTAGCCAATGGAGCCCCGGGTGAGG CATTTAAGTTTCTCGTCTTTGCAGTGGCTTTGCTTAGATCCGGTGCCGCCTTGAAGGCGGGGCTGGGTCCCAGCCGTAGCCAATGGAGCCCCGGGTGAGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1b32c222-05fb-4c01-ab8a-be3e922002e7 cefe8443-c2b3-4fd4-a429-423b1e389d33 . OTUD6B NM_016023 wholegene . . . . 134.0 42.0 154.0 0.0 . 28 . . Pindel