Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PHACTR4	65979	hgsc.bcm.edu	hg19	1	28818225	28818225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PHACTR4	NM_023923	exon11	c.G1972T	p.V658L	GAATATGTAGAGG	.	81.0	32.0	95.0	0.0	.	64	.	.	Atlas-SNP
PRDX1	5052	hgsc.bcm.edu	hg19	1	45977016	45977016	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PRDX1	NM_181696	exon6	c.C585G	p.F195L	CTTGGAGAAATAT	.	78.0	28.0	95.0	0.0	.	16	.	.	Atlas-SNP
DNASE2B	58511	hgsc.bcm.edu	hg19	1	84864291	84864291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DNASE2B	NM_021233	exon1	c.C44A	p.A15D	CCTTTGCTTTGCT	.	89.0	40.0	87.0	0.0	.	40	.	.	Atlas-SNP
GBP2	2634	hgsc.bcm.edu	hg19	1	89575922	89575922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	GBP2	NM_004120	exon9	c.G1390A	p.E464K	TGGACTCCAAATA	.	116.0	54.0	149.0	0.0	.	58	.	.	Atlas-SNP
HFM1	164045	hgsc.bcm.edu	hg19	1	91784735	91784735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	HFM1	NM_001017975	exon25	c.G2712T	p.K904N	AAACTTCTTTTCT	.	106.0	46.0	118.0	0.0	.	188	.	.	Atlas-SNP
CEP350	9857	hgsc.bcm.edu	hg19	1	179965731	179965731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CEP350	NM_014810	exon6	c.G439A	p.E147K	CATCTGGAATCAA	.	117.0	82.0	86.0	0.0	.	418	.	.	Atlas-SNP
CEP350	9857	hgsc.bcm.edu	hg19	1	180003175	180003175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CEP350	NM_014810	exon16	c.G3904A	p.A1302T	AACCCGGCAGCCA	.	249.0	160.0	144.0	0.0	.	418	.	.	Atlas-SNP
C1orf21	81563	hgsc.bcm.edu	hg19	1	184446676	184446676	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	C1orf21	NM_030806	exon2	c.T33A	p.T11T	TGCCACTGTTCAA	.	92.0	48.0	56.0	0.0	.	5	.	.	Atlas-SNP
TRAF3IP3	80342	hgsc.bcm.edu	hg19	1	209936844	209936844	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TRAF3IP3	NM_025228	exon8	c.T614A	p.L205Q	AGGCCCTACAAAG	.	200.0	40.0	132.0	0.0	.	68	.	.	Atlas-SNP
TMEM177	80775	hgsc.bcm.edu	hg19	2	120438937	120438937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TMEM177	NM_030577	exon2	c.G508T	p.A170S	GTGCACGCCCTGC	.	53.0	15.0	58.0	0.0	.	26	.	.	Atlas-SNP
PLA2R1	22925	hgsc.bcm.edu	hg19	2	160901606	160901606	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PLA2R1	NM_001195641	exon2	c.G172C	p.V58L	TCAGAACCGATTT	.	127.0	44.0	126.0	0.0	.	153	.	.	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	hg19	2	210517999	210517999	+	Silent	SNP	C	C	A	rs149857613	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MAP2	NM_001039538	exon5	c.C105A	p.G35G	TCAAGGCGGAGCA	.	121.0	59.0	149.0	0.0	.	372	.	C|1.000;T|0.000	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121200622	121200622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	POLQ,colon,carcinoma,0,1	POLQ	NM_199420	exon19	c.C6008T	p.P2003L	AGAGTCGGCTCCT	.	112.0	42.0	130.0	1.0	.	273	.	.	Atlas-SNP
MUC20	200958	hgsc.bcm.edu	hg19	3	195452957	195452957	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MUC20	NM_152673	exon3	c.A970T	p.T324S	GATGCCACGGTTG	.	302.0	64.0	353.0	0.0	.	84	.	.	Atlas-SNP
TRMT44	152992	hgsc.bcm.edu	hg19	4	8465812	8465812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TRMT44	NM_152544	exon7	c.C1304T	p.A435V	TCATTGCAGCCAG	.	98.0	40.0	107.0	0.0	.	7	.	.	Atlas-SNP
SLC34A2	10568	hgsc.bcm.edu	hg19	4	25664369	25664369	+	Missense_Mutation	SNP	C	C	T	rs374467761	alternate_allele	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SLC34A2	NM_006424	exon3	c.C155T	p.P52L	TTCTGCCGTCCTA	.	144.0	47.0	168.0	0.0	.	93	.	.	Atlas-SNP
KDR	3791	hgsc.bcm.edu	hg19	4	55976858	55976858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	KDR	NM_002253	exon8	c.G1054T	p.A352S	ACTTCGCAGGGAT	.	184.0	74.0	230.0	0.0	.	307	.	.	Atlas-SNP
SPATA5	166378	hgsc.bcm.edu	hg19	4	123900511	123900511	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SPATA5	NM_145207	exon10	c.C1839T	p.A613A	CAGTGCCATGAGG	.	111.0	38.0	135.0	0.0	.	62	.	.	Atlas-SNP
NIPBL	25836	hgsc.bcm.edu	hg19	5	36976173	36976173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NIPBL	NM_015384	exon9	c.T1164A	p.N388K	AGAAAATGATATT	.	226.0	121.0	162.0	0.0	.	513	.	.	Atlas-SNP
PCDHGA2	56113	hgsc.bcm.edu	hg19	5	140720406	140720406	+	Missense_Mutation	SNP	C	C	T	rs370683887		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	PCDHG_cluster,NS,carcinoma,-1,1	PCDHGA2	NM_018915	exon1	c.C1868T	p.T623M	TGCACACGGGCGA	.	56.0	22.0	27.0	0.0	.	205	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38747842	38747842	+	Splice_Site	SNP	G	G	T	rs376576474	alternate_allele	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DNAH8	NM_001206927	exon15	c.2139+1G>T	.	AAGAAGGCAAGTG	.	83.0	21.0	80.0	0.0	.	1239	.	.	Atlas-SNP
OPRM1	4988	hgsc.bcm.edu	hg19	6	154412549	154412549	+	Missense_Mutation	SNP	G	G	A	rs199984546		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	OPRM1_ENST00000434900,scalp,carcinoma,+1,2	OPRM1	NM_001145279	exon5	c.G1385A	p.R462H	GAATTCGTCAGAA	.	76.0	22.0	104.0	0.0	.	241	.	.	Atlas-SNP
MPP6	51678	hgsc.bcm.edu	hg19	7	24690139	24690139	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	MPP6	NM_016447	exon6	c.A459G	p.V153V	TCTGGTAATTGCC	.	77.0	29.0	69.0	0.0	.	62	.	.	Atlas-SNP
SAMD9	54809	hgsc.bcm.edu	hg19	7	92733944	92733944	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SAMD9	NM_001193307	exon2	c.C1467T	p.P489P	CCAGCTGGGTTGA	.	112.0	44.0	140.0	0.0	.	239	.	.	Atlas-SNP
STK3	6788	hgsc.bcm.edu	hg19	8	99719383	99719383	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	STK3	NM_001256312	exon7	c.C592T	p.Q198X	TTAACTGACCAGC	.	228.0	16.0	88.0	0.0	.	47	.	.	Atlas-SNP
WISP1	8840	hgsc.bcm.edu	hg19	8	134232984	134232984	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	WISP1	NM_003882	exon3	c.G510A	p.P170P	CCACCCGCGGCGC	.	102.0	21.0	22.0	0.0	.	64	.	.	Atlas-SNP
TBC1D13	54662	hgsc.bcm.edu	hg19	9	131566320	131566320	+	Silent	SNP	G	G	T	rs373890081	alternate_allele	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TBC1D13	NM_018201	exon9	c.G840T	p.S280S	TGACTCGCAGTGT	.	67.0	24.0	55.0	0.0	.	27	.	.	Atlas-SNP
NDST2	8509	hgsc.bcm.edu	hg19	10	75567215	75567215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NDST2	NM_003635	exon3	c.G932A	p.R311H	ATGTAGCGGTCAA	.	83.0	35.0	100.0	0.0	.	53	.	.	Atlas-SNP
KRTAP5-4	387267	hgsc.bcm.edu	hg19	11	1642677	1642677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	KRTAP5-4	NM_001012709	exon1	c.C647A	p.S216Y	CAACTAGACTGGG	.	64.0	18.0	82.0	0.0	.	78	.	.	Atlas-SNP
TRIM21	6737	hgsc.bcm.edu	hg19	11	4411479	4411479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TRIM21	NM_003141	exon2	c.G161A	p.C54Y	TGCCGGCACACAG	.	62.0	19.0	76.0	0.0	.	45	.	.	Atlas-SNP
HBG1	3047	hgsc.bcm.edu	hg19	11	5269688	5269688	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	HBG1	NM_000559	exon3	c.G345A	p.L115L	GATTGCCAAAACG	.	214.0	66.0	248.0	0.0	.	11	.	.	Atlas-SNP
SF3B2	10992	hgsc.bcm.edu	hg19	11	65828070	65828070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SF3B2	NM_006842	exon14	c.G1647T	p.M549I	GACCATGAAGTCA	.	50.0	24.0	66.0	0.0	.	85	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39338482	39338482	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	FREM2	NM_207361	exon3	c.G5305C	p.A1769P	AATTGGGCATGGA	.	136.0	45.0	169.0	0.0	.	385	.	.	Atlas-SNP
AP5M1	55745	hgsc.bcm.edu	hg19	14	57741433	57741433	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	NM_018229	exon2	c.T546C	p.D182D	ATTAGATAATACC	.	125.0	45.0	161.0	0.0	.	.	.	.	Atlas-SNP
DOC2A	8448	hgsc.bcm.edu	hg19	16	30018527	30018527	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DOC2A	NM_003586	exon6	c.G621A	p.K207K	AAAATGCTTCTTC	.	49.0	23.0	44.0	0.0	.	40	.	.	Atlas-SNP
DHODH	1723	hgsc.bcm.edu	hg19	16	72058091	72058091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DHODH	NM_001361	exon9	c.G1181C	p.R394P	ATCATCGGAGGTG	.	162.0	53.0	185.0	0.0	.	33	.	.	Atlas-SNP
TRPV1	7442	hgsc.bcm.edu	hg19	17	3493227	3493227	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	TRPV1_ENST00000399756,NS,carcinoma,0,2	TRPV1	NM_018727	exon6	c.G918T	p.V306V	GCTCGTCACAAAC	.	61.0	36.0	90.0	0.0	.	99	.	.	Atlas-SNP
TRPV1	7442	hgsc.bcm.edu	hg19	17	3493239	3493239	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	TRPV1	NM_018727	exon6	c.C906T	p.N302N	CTTCGTGTTGTCG	.	48.0	29.0	81.0	0.0	.	99	.	.	Atlas-SNP
STAT3	6774	hgsc.bcm.edu	hg19	17	40481576	40481576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	STAT3	NM_003150	exon13	c.A1229G	p.H410R	ACCAAGTGTTTGA	.	150.0	79.0	141.0	0.0	.	268	.	.	Atlas-SNP
KIF2B	84643	hgsc.bcm.edu	hg19	17	51901390	51901390	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	KIF2B	NM_032559	exon1	c.G996T	p.V332V	TCTGGTGGCACAG	.	109.0	30.0	90.0	0.0	.	254	.	.	Atlas-SNP
DYNLL2	140735	hgsc.bcm.edu	hg19	17	56166589	56166589	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	DYNLL2	NM_080677	exon3	c.C219T	p.F73F	GCACTTCATCTAT	.	127.0	27.0	119.0	0.0	.	7	.	.	Atlas-SNP
PRKACA	5566	hgsc.bcm.edu	hg19	19	14208204	14208204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	PRKACA	NM_002730	exon8	c.T734C	p.I245T	ATCTGGATGGGCT	.	61.0	22.0	65.0	0.0	.	65	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	hg19	19	15303036	15303036	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NOTCH3	NM_000435	exon4	c.C414T	p.P138P	TCCATCGGGCCCC	.	34.0	15.0	54.0	0.0	.	340	.	.	Atlas-SNP
CATSPERG	57828	hgsc.bcm.edu	hg19	19	38855544	38855544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CATSPERG	NM_021185	exon21	c.A2489T	p.D830V	TCAAGGATAAAAA	.	58.0	17.0	63.0	0.0	.	121	.	.	Atlas-SNP
ZNF543	125919	hgsc.bcm.edu	hg19	19	57840110	57840110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ZNF543	NM_213598	exon4	c.A1280C	p.E427A	GCAGTGAATGTGG	.	37.0	15.0	52.0	0.0	.	61	.	.	Atlas-SNP
IL17RA	23765	hgsc.bcm.edu	hg19	22	17577966	17577966	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	IL17RA,NS,carcinoma,0,1	IL17RA	NM_014339	exon2	c.G153A	p.T51T	CTGCACGGTCAAG	.	191.0	70.0	216.0	0.0	.	62	.	.	Atlas-SNP
SRPX	8406	hgsc.bcm.edu	hg19	X	38020249	38020249	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	SRPX	NM_001170752	exon6	c.C712T	p.Q238X	TGTACTGGATCTT	.	44.0	30.0	46.0	0.0	.	53	.	.	Atlas-SNP
ELF4	2000	hgsc.bcm.edu	hg19	X	129200820	129200820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	ELF4	NM_001421	exon9	c.C1868A	p.S623Y	AGCAGGGACCCTG	.	67.0	47.0	78.0	0.0	.	67	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13063	13063	+	Missense_Mutation	SNP	G	G	A	rs28670513	bycluster	TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	.	ENST00000361567	exon1	c.G727A	p.V243I	ACCCCAGTCTCAG	.	27.0	18.0	10.0	0.0	.	.	.	.	Atlas-SNP
CWC27	10283	hgsc.bcm.edu	hg19	5	64314004	64314005	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CWC27	NM_005869	exon14	c.1275_1276insTT	p.Q425fs	.	.	264.0	145.0	202.0	0.0	.	47	.	.	Atlas-INDEL
FABP1	2168	hgsc.bcm.edu	hg19	2	88424070	88424072	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	FABP1	NM_001443	exon3	c.275_277del	p.92_93del	.	.	43.0	16.0	80.0	0.0	.	23	.	.	Atlas-Indel,Pindel
COLEC10	10584	hgsc.bcm.edu	hg19	8	120118098	120118103	+	In_Frame_Del	DEL	AACTAC	AACTAC	-	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	AACTAC	AACTAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	COLEC10	NM_006438	exon6	c.501_506del	p.167_169del	.	.	255.0	17.0	84.0	0.0	.	46	.	.	Atlas-Indel,Pindel
C17orf104	284071	hgsc.bcm.edu	hg19	17	42744727	42744728	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	C17orf104	NM_001145080	exon5	c.1448_1449insA	p.T483fs	.	.	107.0	34.0	70.0	0.0	.	75	.	.	Atlas-INDEL
NF1	4763	hgsc.bcm.edu	hg19	17	29541512	29541512	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	NF1	NM_001042492	exon13	c.1435delG	p.E479fs	.	.	202.0	103.0	182.0	0.0	.	1586	.	.	Atlas-Indel,Pindel
CCDC73	493860	hgsc.bcm.edu	hg19	11	32635624	32635625	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	CCDC73	NM_001008391	exon16	c.2240_2241insA	p.E747fs	.	.	81.0	20.0	113.0	0.0	.	136	.	.	Atlas-INDEL
BEST3	144453	hgsc.bcm.edu	hg19	12	70049144	70049144	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	BEST3	NM_032735	exon10	c.1551delC	p.G517fs	.	.	61.0	28.0	68.0	0.0	.	129	.	.	Atlas-Indel,Pindel
POSTN	10631	hgsc.bcm.edu	hg19	13	38159033	38159033	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A3-01A-11D-A22F-10	TCGA-DD-A3A3-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23566732-cbc1-407d-aa01-5ae509f9fe44	17a04c22-ddc8-4da6-87c4-c27e1b7c6585	.	POSTN	NM_006475	exon8	c.929delA	p.Q310fs	.	.	118.0	41.0	142.0	0.0	.	161	.	.	Atlas-Indel,Pindel