Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
FCGR2A	2212	hgsc.bcm.edu	hg19	1	161475295	161475295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	FCGR2A,NS,carcinoma,0,1	FCGR2A	NM_001136219	exon1	c.C38T	p.P13L	TATGTCCCAGAAA	.	90.0	33.0	60.0	0.0	.	38	.	.	Atlas-SNP
FCGR3B	2215	hgsc.bcm.edu	hg19	1	161595991	161595991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	FCGR3B	NM_001244753	exon4	c.G629A	p.G210E	ACAAGCCCCCTGC	.	184.0	100.0	133.0	0.0	.	35	.	.	Atlas-SNP
ATP2B4	493	hgsc.bcm.edu	hg19	1	203683382	203683382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ATP2B4	NM_001001396	exon15	c.A2383C	p.K795Q	CTGAAGAAAGCGG	.	60.0	28.0	42.0	0.0	.	226	.	.	Atlas-SNP
TLR5	7100	hgsc.bcm.edu	hg19	1	223284253	223284253	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	TLR5	NM_003268	exon6	c.G2121T	p.V707V	ATTCTGCACCCAT	.	106.0	5.0	123.0	0.0	.	86	.	.	Atlas-SNP
LYST	1130	hgsc.bcm.edu	hg19	1	235915327	235915327	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	LYST	NM_000081	exon27	c.T7605C	p.N2535N	TTTGCTATTTTGA	.	89.0	50.0	86.0	0.0	.	370	.	.	Atlas-SNP
SOS1	6654	hgsc.bcm.edu	hg19	2	39278406	39278406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SOS1	NM_005633	exon6	c.G743A	p.R248H	ACTATGCGACTAA	.	91.0	85.0	99.0	0.0	.	134	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73676478	73676478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ALMS1	NM_015120	exon8	c.G2821A	p.A941T	TTGGCTGCCCAGA	.	254.0	93.0	185.0	0.0	.	384	.	.	Atlas-SNP
TACR1	6869	hgsc.bcm.edu	hg19	2	75276831	75276831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	TACR1	NM_001058	exon5	c.C952A	p.H318N	AGGCATGCTTGAA	.	47.0	25.0	37.0	0.0	.	62	.	.	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	hg19	2	109380985	109380985	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	RANBP2	NM_006267	exon20	c.T3990C	p.D1330D	TCATGATAACAAG	.	47.0	43.0	99.0	0.0	.	488	.	.	Atlas-SNP
SCN1A	6323	hgsc.bcm.edu	hg19	2	166897863	166897863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SCN1A	NM_001165963	exon13	c.G2293T	p.V765L	CCATCACAACCAG	.	37.0	29.0	87.0	0.0	.	641	.	.	Atlas-SNP
PRKAG3	53632	hgsc.bcm.edu	hg19	2	219688557	219688557	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	PRKAG3	NM_017431	exon13	c.C1398T	p.G466G	GACCACGCCCAAG	.	13.0	8.0	34.0	0.0	.	47	.	.	Atlas-SNP
PASK	23178	hgsc.bcm.edu	hg19	2	242075390	242075390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	PASK	NM_015148	exon8	c.A1202G	p.Q401R	GGGAGCTGTAATG	.	35.0	30.0	84.0	0.0	.	230	.	.	Atlas-SNP
TMEM42	131616	hgsc.bcm.edu	hg19	3	44906567	44906567	+	Silent	SNP	G	G	A	rs376440839		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	TMEM42	NM_144638	exon3	c.G375A	p.Q125Q	GTGCCAGGAGGTC	.	135.0	64.0	155.0	0.0	.	15	.	.	Atlas-SNP
CCR2	729230	hgsc.bcm.edu	hg19	3	46399400	46399400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CCR2	NM_001123041	exon2	c.A382G	p.I128V	GGCGGAATCTTCT	.	180.0	82.0	178.0	0.0	.	103	.	.	Atlas-SNP
BCL6	604	hgsc.bcm.edu	hg19	3	187447680	187447680	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	BCL6	NM_001134738	exon4	c.C513T	p.S171S	AGGGGCGCTCCTC	.	36.0	34.0	72.0	0.0	.	107	.	.	Atlas-SNP
GRIA2	2891	hgsc.bcm.edu	hg19	4	158256937	158256937	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	GRIA2	NM_000826	exon10	c.T1381A	p.Y461N	TTCAAGTACAAGT	.	68.0	59.0	140.0	0.0	.	358	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13913898	13913898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	DNAH5	NM_001369	exon11	c.A1490G	p.Q497R	GAATCTTGCAGGA	.	112.0	59.0	102.0	0.0	.	868	.	.	Atlas-SNP
C9	735	hgsc.bcm.edu	hg19	5	39308341	39308341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	C9	NM_001737	exon8	c.G1231A	p.G411S	CTCTACCCTCTCC	.	287.0	120.0	324.0	0.0	.	116	.	.	Atlas-SNP
C5orf34	375444	hgsc.bcm.edu	hg19	5	43492341	43492341	+	Missense_Mutation	SNP	A	A	G	rs145050535		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	C5orf34,NS,carcinoma,0,1	C5orf34	NM_198566	exon10	c.T1556C	p.I519T	TGTTCAATCTGAA	.	429.0	181.0	414.0	0.0	.	47	.	A|1.000;G|0.000	Atlas-SNP
TMEM174	134288	hgsc.bcm.edu	hg19	5	72469597	72469597	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	TMEM174	NM_153217	exon1	c.T527A	p.M176K	CCGCCATGTCAAG	.	142.0	61.0	167.0	0.0	.	22	.	.	Atlas-SNP
ARSB	411	hgsc.bcm.edu	hg19	5	78280832	78280832	+	Silent	SNP	C	C	T	rs368338486	bycluster	TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ARSB	NM_198709	exon2	c.G240A	p.V80V	CAGGAGCACCCCG	.	29.0	10.0	7.0	0.0	.	47	.	.	Atlas-SNP
MAN2A1	4124	hgsc.bcm.edu	hg19	5	109178033	109178033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	MAN2A1	NM_002372	exon17	c.A2571G	p.I857M	AGGAATAGAAGGA	.	284.0	128.0	302.0	0.0	.	136	.	.	Atlas-SNP
SPINK6	404203	hgsc.bcm.edu	hg19	5	147593575	147593575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SPINK6	NM_205841	exon3	c.T184C	p.C62R	GCCTTCTGTAAGG	.	70.0	30.0	58.0	0.0	.	8	.	.	Atlas-SNP
HIVEP1	3096	hgsc.bcm.edu	hg19	6	12120242	12120242	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	HIVEP1	NM_002114	exon4	c.C214T	p.Q72X	CCTCTTCAGGCAA	.	102.0	5.0	110.0	0.0	.	242	.	.	Atlas-SNP
E2F3	1871	hgsc.bcm.edu	hg19	6	20481488	20481488	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	E2F3	NM_001949	exon3	c.T557G	p.L186R	GTCTGCTCACCAA	.	57.0	25.0	69.0	0.0	.	30	.	.	Atlas-SNP
INHBA	3624	hgsc.bcm.edu	hg19	7	41729922	41729922	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	INHBA	NM_002192	exon3	c.G607T	p.E203X	ACAGTTCACTCCT	.	104.0	30.0	118.0	0.0	.	118	.	.	Atlas-SNP
CCDC146	57639	hgsc.bcm.edu	hg19	7	76796998	76796998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CCDC146	NM_020879	exon2	c.A13G	p.S5G	GACAGTAGCACAG	.	486.0	155.0	492.0	0.0	.	87	.	.	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	hg19	7	83035265	83035265	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SEMA3E	NM_012431	exon8	c.A924G	p.E308E	ACCTAATTCATCA	.	84.0	37.0	71.0	0.0	.	125	.	.	Atlas-SNP
SRRT	51593	hgsc.bcm.edu	hg19	7	100478943	100478943	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SRRT	NM_001128853	exon3	c.G160T	p.E54X	CGGGGTGAATATC	.	77.0	29.0	46.0	0.0	.	108	.	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103202066	103202066	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	RELN	NM_173054	exon36	c.T5442C	p.P1814P	AAGGTCAGGATGT	.	81.0	37.0	71.0	0.0	.	593	.	.	Atlas-SNP
DOCK4	9732	hgsc.bcm.edu	hg19	7	111449457	111449457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	DOCK4	NM_014705	exon29	c.A3007G	p.I1003V	CCCAGATCTAAAA	.	50.0	30.0	70.0	0.0	.	365	.	.	Atlas-SNP
DPP6	1804	hgsc.bcm.edu	hg19	7	154645526	154645526	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	DPP6	NM_130797	exon17	c.C1703G	p.T568R	ACACAACAGATAA	.	103.0	35.0	113.0	0.0	.	383	.	.	Atlas-SNP
KIAA0368	23392	hgsc.bcm.edu	hg19	9	114124389	114124389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	KIAA0368	NM_001080398	exon51	c.C5975T	p.A1992V	ATAGTAGCTAAAG	.	130.0	69.0	148.0	0.0	.	144	.	.	Atlas-SNP
OLFML2A	169611	hgsc.bcm.edu	hg19	9	127563879	127563879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	OLFML2A	NM_182487	exon5	c.G856T	p.A286S	CAGCAGGCTGTGA	.	132.0	59.0	130.0	0.0	.	61	.	.	Atlas-SNP
RABEPK	10244	hgsc.bcm.edu	hg19	9	127996064	127996064	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	RABEPK	NM_005833	exon8	c.T924C	p.A308A	GTGTGCTTCTGAG	.	126.0	56.0	122.0	0.0	.	46	.	.	Atlas-SNP
URM1	81605	hgsc.bcm.edu	hg19	9	131152007	131152007	+	Silent	SNP	C	C	T	rs374697837		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	URM1	NM_030914	exon5	c.C300T	p.G100G	GCACGGCGGCTGA	.	94.0	39.0	101.0	0.0	.	19	.	.	Atlas-SNP
NPFFR1	64106	hgsc.bcm.edu	hg19	10	72015152	72015152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	NPFFR1	NM_022146	exon4	c.C854T	p.P285L	CAGAGCGGCAGCC	.	18.0	9.0	21.0	0.0	.	21	.	.	Atlas-SNP
ACSL5	51703	hgsc.bcm.edu	hg19	10	114168208	114168208	+	Missense_Mutation	SNP	C	C	G	rs140011392	bycluster;alternate_allele	TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ACSL5	NM_016234	exon6	c.C629G	p.T210R	GTTACACGTACTC	.	153.0	68.0	156.0	0.0	.	51	.	C|1.000;T|0.000	Atlas-SNP
KCNK18	338567	hgsc.bcm.edu	hg19	10	118969678	118969678	+	Silent	SNP	C	C	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	KCNK18	NM_181840	exon3	c.C1023G	p.S341S	CTTCTCCATTTAT	.	94.0	42.0	102.0	0.0	.	70	.	.	Atlas-SNP
PRLHR	2834	hgsc.bcm.edu	hg19	10	120354363	120354363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	PRLHR	NM_004248	exon2	c.G394A	p.G132S	ACAGGCCGCCGCC	.	36.0	17.0	28.0	0.0	.	41	.	.	Atlas-SNP
C11orf40	143501	hgsc.bcm.edu	hg19	11	4592676	4592676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	C11orf40	NM_144663	exon4	c.A631G	p.N211D	AGTAGTTCACATC	.	73.0	15.0	72.0	0.0	.	37	.	.	Atlas-SNP
OR51F1	256892	hgsc.bcm.edu	hg19	11	4790712	4790712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	OR51F1	NM_001004752	exon1	c.A436G	p.M146V	GACCCATTTGAAT	.	76.0	34.0	63.0	0.0	.	60	.	.	Atlas-SNP
CYP2R1	120227	hgsc.bcm.edu	hg19	11	14902228	14902228	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CYP2R1	NM_024514	exon3	c.A454C	p.K152Q	AAGACTTTTGGCC	.	141.0	60.0	121.0	0.0	.	41	.	.	Atlas-SNP
OR8I2	120586	hgsc.bcm.edu	hg19	11	55861688	55861688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	OR8I2,scalp,carcinoma,0,1	OR8I2	NM_001003750	exon1	c.G905A	p.R302K	TTCTGAGAGTCAT	.	29.0	13.0	39.0	0.0	.	119	.	.	Atlas-SNP
EHBP1L1	254102	hgsc.bcm.edu	hg19	11	65359477	65359477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	EHBP1L1	NM_001099409	exon18	c.G4388T	p.R1463L	AGCACCGAGAGCA	.	56.0	25.0	57.0	0.0	.	64	.	.	Atlas-SNP
ADRBK1	156	hgsc.bcm.edu	hg19	11	67046702	67046702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ADRBK1	NM_001619	exon3	c.C222A	p.N74K	CCTGAACCACCTG	.	96.0	37.0	100.0	0.0	.	51	.	.	Atlas-SNP
PIWIL4	143689	hgsc.bcm.edu	hg19	11	94318670	94318670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	PIWIL4	NM_152431	exon6	c.C695A	p.P232Q	CAGAGCCAATGGA	.	77.0	63.0	116.0	0.0	.	70	.	.	Atlas-SNP
CD9	928	hgsc.bcm.edu	hg19	12	6342629	6342629	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CD9	NM_001769	exon4	c.T325G	p.W109G	GCCATCTGGGGAT	.	83.0	41.0	93.0	0.0	.	24	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46246151	46246151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ARID2	NM_152641	exon15	c.T4245G	p.I1415M	AAGAATTTCTAAT	.	155.0	63.0	163.0	0.0	.	311	.	.	Atlas-SNP
CALCOCO1	57658	hgsc.bcm.edu	hg19	12	54118936	54118936	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CALCOCO1	NM_020898	exon2	c.G91T	p.E31X	GACATTCCACCTT	.	135.0	58.0	117.0	0.0	.	50	.	.	Atlas-SNP
CHST11	50515	hgsc.bcm.edu	hg19	12	105151023	105151023	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CHST11	NM_018413	exon3	c.C501A	p.Y167X	CCAGTACAGCATC	.	71.0	31.0	65.0	0.0	.	54	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77656079	77656079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	MYCBP2	NM_015057	exon64	c.A11086G	p.S3696G	CGTTGCTCTGATG	.	124.0	56.0	82.0	0.0	.	1029	.	.	Atlas-SNP
MYO16	23026	hgsc.bcm.edu	hg19	13	109793226	109793226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	MYO16	NM_001198950	exon32	c.G4666A	p.G1556R	CCGGAGGGGTCGA	.	150.0	44.0	70.0	0.0	.	285	.	.	Atlas-SNP
CHURC1	91612	hgsc.bcm.edu	hg19	14	65398946	65398946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	CHURC1	NM_145165	exon4	c.T421C	p.X141Q	TTATTCTAAGGAT	.	131.0	31.0	109.0	0.0	.	6	.	.	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	hg19	15	48056407	48056407	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SEMA6D	NM_153617	exon11	c.T1002A	p.D334E	CATGGATGACATT	.	104.0	84.0	186.0	0.0	.	322	.	.	Atlas-SNP
ACAN	176	hgsc.bcm.edu	hg19	15	89400397	89400397	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ACAN	NM_001135	exon12	c.G4581A	p.R1527R	CAGCAGGCTCCCT	.	42.0	38.0	64.0	0.0	.	220	.	.	Atlas-SNP
ZNF764	92595	hgsc.bcm.edu	hg19	16	30569410	30569410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ZNF764	NM_001172679	exon1	c.G94T	p.A32S	ACACGGCCACGTC	.	18.0	9.0	31.0	0.0	.	20	.	.	Atlas-SNP
NAGS	162417	hgsc.bcm.edu	hg19	17	42083959	42083959	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	NAGS	NM_153006	exon4	c.C978T	p.S326S	GGTGAGCACAAAA	.	61.0	25.0	60.0	0.0	.	25	.	.	Atlas-SNP
ITGA3	3675	hgsc.bcm.edu	hg19	17	48156884	48156884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ITGA3	NM_005501	exon21	c.T2669C	p.L890P	TCACTCTGGCTGC	.	68.0	31.0	62.0	0.0	.	128	.	.	Atlas-SNP
ZACN	353174	hgsc.bcm.edu	hg19	17	74075584	74075584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ZACN	NM_180990	exon2	c.C162A	p.N54K	CCCGAACAATGGG	.	164.0	79.0	153.0	0.0	.	29	.	.	Atlas-SNP
CHMP6	79643	hgsc.bcm.edu	hg19	17	78968447	78968447	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	CHMP6,right_upper_lobe,carcinoma,0,1	CHMP6	NM_024591	exon2	c.G130T	p.E44X	GAGCGCGAGCGCG	.	79.0	33.0	63.0	0.0	.	16	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80045029	80045029	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	FASN	NM_004104	exon21	c.G3324A	p.E1108E	CTGCTGCTCCTGC	.	58.0	30.0	68.0	0.0	.	154	.	.	Atlas-SNP
EMILIN2	84034	hgsc.bcm.edu	hg19	18	2909794	2909794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	EMILIN2	NM_032048	exon7	c.G2801T	p.G934V	ACGACGGGGATGT	.	104.0	40.0	104.0	0.0	.	97	.	.	Atlas-SNP
DOT1L	84444	hgsc.bcm.edu	hg19	19	2217014	2217014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	DOT1L	NM_032482	exon21	c.G2469T	p.M823I	CAGCATGAAGCTG	.	49.0	21.0	68.0	0.0	.	205	.	.	Atlas-SNP
C3	718	hgsc.bcm.edu	hg19	19	6714382	6714382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	C3	NM_000064	exon5	c.G580A	p.D194N	GAATGTCCCAAGA	.	101.0	56.0	79.0	0.0	.	192	.	.	Atlas-SNP
MYO9B	4650	hgsc.bcm.edu	hg19	19	17291744	17291744	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	MYO9B	NM_001130065	exon15	c.A2228T	p.H743L	ATTTGCATAACCA	.	93.0	37.0	79.0	0.0	.	264	.	.	Atlas-SNP
GPI	2821	hgsc.bcm.edu	hg19	19	34890537	34890537	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	GPI	NM_001184722	exon16	c.1507+1G>T	.	TGGTCGGTGAGTG	.	156.0	59.0	150.0	0.0	.	63	.	.	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	hg19	19	35992755	35992755	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	DMKN	NM_001035516	exon1	c.C51T	p.G17G	GGCCAGGCCCAGC	.	30.0	8.0	42.0	0.0	.	116	.	.	Atlas-SNP
ZNF221	7638	hgsc.bcm.edu	hg19	19	44471018	44471018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	ZNF221	NM_013359	exon6	c.G1364A	p.C455Y	AGGAGTGTGGTAA	.	71.0	39.0	64.0	0.0	.	59	.	.	Atlas-SNP
CENPB	1059	hgsc.bcm.edu	hg19	20	3765895	3765895	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	CENPB,NS,carcinoma,0,1	CENPB	NM_001810	exon1	c.G1236A	p.E412E	TTCTTCCTCCTCC	.	51.0	3.0	45.0	0.0	.	24	.	.	Atlas-SNP
KIF16B	55614	hgsc.bcm.edu	hg19	20	16387061	16387061	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	KIF16B	NM_001199865	exon16	c.T1653C	p.F551F	ATGGTTAAAGCGA	.	122.0	62.0	98.0	0.0	.	305	.	.	Atlas-SNP
EDEM2	55741	hgsc.bcm.edu	hg19	20	33703635	33703635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	EDEM2,NS,carcinoma,0,1	EDEM2	NM_018217	exon11	c.C1338G	p.F446L	GTGGATGAAGTTG	.	150.0	65.0	149.0	0.0	.	46	.	.	Atlas-SNP
SCAND1	51282	hgsc.bcm.edu	hg19	20	34541998	34541998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	SCAND1	NM_033630	exon2	c.C398T	p.A133V	AGGGCCGCGGAGG	.	23.0	12.0	26.0	0.0	.	2	.	.	Atlas-SNP
KCNQ2	3785	hgsc.bcm.edu	hg19	20	62076074	62076074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	KCNQ2	NM_172106	exon4	c.C628T	p.R210C	CCATGCGGATCAT	.	57.0	25.0	56.0	0.0	.	201	.	.	Atlas-SNP
FAM47B	170062	hgsc.bcm.edu	hg19	X	34962716	34962716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	FAM47B	NM_152631	exon1	c.A1768T	p.I590F	GGACCAATTGCCT	.	217.0	49.0	186.0	0.0	.	209	.	.	Atlas-SNP
USP26	83844	hgsc.bcm.edu	hg19	X	132161219	132161219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	USP26	NM_031907	exon1	c.C1030T	p.R344W	GTAGCCGTGCCAA	.	264.0	133.0	268.0	0.0	.	135	.	.	Atlas-SNP
ATP8	0	hgsc.bcm.edu	hg19	MT	8539	8539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73B-01A-12D-A32G-10	TCGA-DD-A73B-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4d9df4d-9dd6-46d9-a147-8b26ebd05af3	1669b7ec-5ff8-4578-afe1-3e5d3094b3bf	.	.	ENST00000361851	exon1	c.C174A	p.I58M	GAAAATCTGTTCG	.	23.0	8.0	11.0	0.0	.	.	.	.	Atlas-SNP