Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm EMC1 23065 hgsc.bcm.edu hg19 1 19571434 19571434 + Silent SNP C C A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . . NM_001271427 exon2 c.G186T p.V62V TGCAATCACATTC . 255.0 109.0 255.0 0.0 . . . . Atlas-SNP NBPF3 84224 hgsc.bcm.edu hg19 1 21799392 21799392 + Missense_Mutation SNP G G C novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . NBPF3 NM_001256416 exon6 c.A718C p.K240Q GTACAGGAATTAT . 93.0 10.0 110.0 0.0 . 55 . . Atlas-SNP RBBP4 5928 hgsc.bcm.edu hg19 1 33145241 33145241 + Missense_Mutation SNP G G A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . RBBP4 NM_005610 exon12 c.G1213A p.A405T GGGCAGGCAGAGA . 67.0 29.0 54.0 0.0 . 38 . . Atlas-SNP RBBP4 5928 hgsc.bcm.edu hg19 1 33145248 33145248 + Missense_Mutation SNP A A T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . RBBP4 NM_005610 exon12 c.A1220T p.N407I CAGAGAACATTTA . 71.0 29.0 53.0 0.0 . 38 . . Atlas-SNP LRRC7 57554 hgsc.bcm.edu hg19 1 70504162 70504162 + Silent SNP A A G novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . LRRC7 NM_020794 exon19 c.A2541G p.R847R GACCAGAACCCCT . 215.0 97.0 228.0 0.0 . 400 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158648305 158648305 + Missense_Mutation SNP G G C novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . SPTA1 NM_003126 exon6 c.C698G p.P233R ATTAAGGGTAGGT . 123.0 61.0 68.0 0.0 . 720 . . Atlas-SNP PFKFB2 5208 hgsc.bcm.edu hg19 1 207228111 207228111 + Missense_Mutation SNP A A G novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . PFKFB2 NM_001018053 exon2 c.A49G p.K17E GAAACCAAAACCC . 165.0 40.0 71.0 0.0 . 70 . . Atlas-SNP RD3 343035 hgsc.bcm.edu hg19 1 211654728 211654728 + Silent SNP G G A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 RD3,colon,carcinoma,0,3 RD3 NM_183059 exon2 c.C30T p.N10N GGCCTCGTTCCAC . 158.0 43.0 85.0 0.0 . 26 . . Atlas-SNP OR2M2 391194 hgsc.bcm.edu hg19 1 248343509 248343509 + Missense_Mutation SNP C C G novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . OR2M2 NM_001004688 exon1 c.C222G p.I74M GCTCATCTGCACC . 360.0 85.0 158.0 0.0 . 149 . . Atlas-SNP VWA3B 200403 hgsc.bcm.edu hg19 2 98852884 98852884 + Silent SNP G G T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . VWA3B NM_144992 exon18 c.G2460T p.L820L GTGGCTGGATGAC . 162.0 63.0 163.0 0.0 . 138 . . Atlas-SNP SCRN3 79634 hgsc.bcm.edu hg19 2 175292534 175292534 + Missense_Mutation SNP G G T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . SCRN3 NM_024583 exon8 c.G1186T p.V396L CTTGATGTGGAGA . 398.0 208.0 342.0 0.0 . 76 . . Atlas-SNP GNAT1 2779 hgsc.bcm.edu hg19 3 50232232 50232232 + Silent SNP C C A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . GNAT1 NM_144499 exon8 c.C897A p.I299I CTACATCAAGGTG . 91.0 45.0 90.0 0.0 . 39 . . Atlas-SNP SEMA3G 56920 hgsc.bcm.edu hg19 3 52472194 52472194 + Silent SNP G G T rs371791154 alternate_allele TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 SEMA3G,NS,carcinoma,0,1 SEMA3G NM_020163 exon14 c.C1531A p.R511R CCAGCCGAGAGCC . 138.0 55.0 138.0 0.0 . 58 . . Atlas-SNP GOLGB1 2804 hgsc.bcm.edu hg19 3 121416741 121416741 + Missense_Mutation SNP C C T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . GOLGB1 NM_001256486 exon13 c.G2629A p.E877K CAAGTTCCTTCTG . 107.0 62.0 83.0 0.0 . 319 . . Atlas-SNP EPHB3 2049 hgsc.bcm.edu hg19 3 184298884 184298884 + Missense_Mutation SNP T T A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . EPHB3 NM_004443 exon14 c.T2663A p.I888N CCCAGATTGTCAA . 102.0 59.0 73.0 0.0 . 114 . . Atlas-SNP CRMP1 1400 hgsc.bcm.edu hg19 4 5853138 5853138 + Silent SNP G G A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . CRMP1 NM_001014809 exon5 c.C879T p.S293S TACCTGGCTGTCG . 104.0 45.0 95.0 0.0 . 118 . . Atlas-SNP DCAF4L1 285429 hgsc.bcm.edu hg19 4 41984060 41984060 + Missense_Mutation SNP A A T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . DCAF4L1 NM_001029955 exon1 c.A251T p.D84V ACAGCGACCAGCT . 172.0 80.0 138.0 0.0 . 70 . . Atlas-SNP PRDM5 11107 hgsc.bcm.edu hg19 4 121706177 121706177 + Missense_Mutation SNP G G C novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . PRDM5 NM_018699 exon11 c.C1258G p.Q420E GTCTCTGTAAAGA . 36.0 21.0 45.0 0.0 . 76 . . Atlas-SNP TRIML1 339976 hgsc.bcm.edu hg19 4 189061721 189061721 + Missense_Mutation SNP A A G novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . TRIML1 NM_178556 exon2 c.A448G p.R150G GTAAGGAGAAAGG . 67.0 63.0 113.0 0.0 . 126 . . Atlas-SNP TMED9 54732 hgsc.bcm.edu hg19 5 177021211 177021211 + Silent SNP G G A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . TMED9 NM_017510 exon4 c.G483A p.L161L CAAGTTGAGTGAG . 214.0 95.0 199.0 0.0 . 18 . . Atlas-SNP OR2W1 26692 hgsc.bcm.edu hg19 6 29012190 29012190 + Missense_Mutation SNP T T C novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . OR2W1 NM_030903 exon1 c.A763G p.I255V AGATAATAGTTCC . 200.0 98.0 168.0 0.0 . 36 . . Atlas-SNP MTRF1L 54516 hgsc.bcm.edu hg19 6 153316444 153316444 + Missense_Mutation SNP A A C novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . MTRF1L NM_019041 exon3 c.T350G p.L117R ACCAAAAGTAAGA . 174.0 71.0 134.0 0.0 . 21 . . Atlas-SNP ZNF716 441234 hgsc.bcm.edu hg19 7 57529237 57529237 + Missense_Mutation SNP G G T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . ZNF716 NM_001159279 exon4 c.G1070T p.C357F AAGAATGTGGGAA . 172.0 76.0 134.0 0.0 . 207 . . Atlas-SNP TECPR1 25851 hgsc.bcm.edu hg19 7 97863048 97863048 + Missense_Mutation SNP T T C novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . TECPR1 NM_015395 exon11 c.A1357G p.T453A CTGCGGTCCTGCC . 162.0 54.0 113.0 0.0 . 77 . . Atlas-SNP NEIL2 252969 hgsc.bcm.edu hg19 8 11637363 11637363 + Missense_Mutation SNP G G A rs147360797 TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . NEIL2 NM_001135746 exon3 c.G395A p.R132H GGCTGCGTGTCAG . 49.0 39.0 81.0 0.0 . 14 . G|1.000;A|0.000 Atlas-SNP PKHD1L1 93035 hgsc.bcm.edu hg19 8 110477316 110477316 + Missense_Mutation SNP T T A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . PKHD1L1 NM_177531 exon49 c.T8255A p.V2752E ACTGTGTAGCTTT . 265.0 77.0 158.0 0.0 . 522 . . Atlas-SNP KLF9 687 hgsc.bcm.edu hg19 9 73028153 73028153 + Missense_Mutation SNP C C T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . KLF9 NM_001206 exon1 c.G127A p.V43M TGGTCACCTCGCG . 60.0 25.0 68.0 0.0 . 16 . . Atlas-SNP ARID5B 84159 hgsc.bcm.edu hg19 10 63852733 63852733 + Missense_Mutation SNP C C G novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . ARID5B NM_032199 exon10 c.C3511G p.Q1171E AATCCTCAAGCTG . 66.0 34.0 45.0 0.0 . 125 . . Atlas-SNP DNA2 1763 hgsc.bcm.edu hg19 10 70192255 70192255 + Silent SNP G G A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . DNA2 NM_001080449 exon11 c.C1659T p.V553V TGGAAGGACCGAC . 346.0 135.0 328.0 0.0 . 76 . . Atlas-SNP DUSP13 51207 hgsc.bcm.edu hg19 10 76867822 76867822 + Missense_Mutation SNP G G T rs201419297 alternate_allele TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . DUSP13 NM_001007271 exon2 c.C295A p.P99T AATCAGGGAGGTC . 142.0 58.0 119.0 0.0 . 82 . G|0.998;A|0.002 Atlas-SNP CD81 975 hgsc.bcm.edu hg19 11 2416745 2416745 + Missense_Mutation SNP G G A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . CD81 NM_004356 exon5 c.G454A p.E152K TTCCACGAGACGG . 116.0 58.0 108.0 0.0 . 11 . . Atlas-SNP IPO7 10527 hgsc.bcm.edu hg19 11 9452513 9452513 + Missense_Mutation SNP T T G novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . IPO7 NM_006391 exon16 c.T1844G p.I615S ATACAATTGATAC . 78.0 31.0 95.0 0.0 . 72 . . Atlas-SNP LRRC4C 57689 hgsc.bcm.edu hg19 11 40137427 40137427 + Missense_Mutation SNP A A G novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . LRRC4C NM_001258419 exon7 c.T416C p.I139T TTCGGGATGGTAG . 123.0 45.0 107.0 0.0 . 190 . . Atlas-SNP TENM4 26011 hgsc.bcm.edu hg19 11 78387281 78387281 + Silent SNP G G A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . . NM_001098816 exon30 c.C5412T p.I1804I GTTGTCGATGGGC . 71.0 29.0 67.0 0.0 . . . . Atlas-SNP SPSB2 84727 hgsc.bcm.edu hg19 12 6981831 6981831 + Missense_Mutation SNP G G A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . SPSB2 NM_032641 exon2 c.C235T p.R79W TACCCCGGGCCCC . 71.0 29.0 72.0 0.0 . 11 . . Atlas-SNP CUX2 23316 hgsc.bcm.edu hg19 12 111744831 111744831 + Missense_Mutation SNP G G A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . CUX2 NM_015267 exon11 c.G965A p.S322N TCCAGAGCTCACT . 65.0 24.0 57.0 0.0 . 145 . . Atlas-SNP RPH3A 22895 hgsc.bcm.edu hg19 12 113303258 113303258 + Silent SNP G G A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . RPH3A NM_001143854 exon6 c.G270A p.V90V GAACGTGGCTGGA . 97.0 40.0 113.0 0.0 . 98 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124343733 124343733 + Missense_Mutation SNP A A T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . DNAH10 NM_207437 exon37 c.A6313T p.T2105S ATGTTAACCCGCC . 127.0 12.0 63.0 0.0 . 888 . . Atlas-SNP FOXG1 2290 hgsc.bcm.edu hg19 14 29237712 29237712 + Silent SNP G G A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 FOXG1,caecum,carcinoma,0,1 FOXG1 NM_005249 exon1 c.G1227A p.L409L CAACCTGCTCGCG . 88.0 32.0 95.0 0.0 . 92 . . Atlas-SNP PSMC6 5706 hgsc.bcm.edu hg19 14 53194276 53194276 + Missense_Mutation SNP G G T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . PSMC6 NM_002806 exon14 c.G1153T p.V385F AAAGCAGTCAGAA . 100.0 68.0 136.0 0.0 . 71 . . Atlas-SNP KCNH5 27133 hgsc.bcm.edu hg19 14 63483654 63483654 + Missense_Mutation SNP C C T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . KCNH5 NM_172375 exon2 c.G92A p.G31E GCATTTCCCAGTA . 46.0 37.0 91.0 0.0 . 320 . . Atlas-SNP TECPR2 9895 hgsc.bcm.edu hg19 14 102918935 102918935 + Missense_Mutation SNP A A G novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . TECPR2 NM_001172631 exon16 c.A3611G p.H1204R GCATGCACTGGAC . 55.0 37.0 113.0 0.0 . 114 . . Atlas-SNP SPTBN5 51332 hgsc.bcm.edu hg19 15 42145951 42145951 + Missense_Mutation SNP C C T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 SPTBN5,colon,carcinoma,0,1 SPTBN5 NM_016642 exon58 c.G9704A p.R3235Q TGTAGCCGTGCCA . 32.0 16.0 30.0 0.0 . 171 . . Atlas-SNP ABCA3 21 hgsc.bcm.edu hg19 16 2336731 2336731 + Missense_Mutation SNP C C T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . ABCA3 NM_001089 exon22 c.G3242A p.R1081Q GCGCTCCGGGGCT . 138.0 28.0 68.0 0.0 . 176 . . Atlas-SNP SRRM2 23524 hgsc.bcm.edu hg19 16 2819139 2819139 + Silent SNP C C T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . SRRM2 NM_016333 exon12 c.C7875T p.S2625S CTCCTCCTCTTCT . 108.0 7.0 54.0 0.0 . 263 . . Atlas-SNP RBL2 5934 hgsc.bcm.edu hg19 16 53488620 53488620 + Missense_Mutation SNP G G C novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . RBL2 NM_005611 exon8 c.G1045C p.D349H AATTTAGATGAGC . 69.0 62.0 98.0 0.0 . 115 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578554 7578554 + Missense_Mutation SNP A A T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 TP53_ENST00000545858,NS,carcinoma,0,1 TP53 NM_000546 exon5 c.T376A p.Y126N GGGAGTACTGTAG . 51.0 47.0 54.0 0.0 . 33396 . . Atlas-SNP MPRIP 23164 hgsc.bcm.edu hg19 17 17061859 17061859 + Missense_Mutation SNP G G A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . MPRIP NM_015134 exon14 c.G1589A p.R530H GGAGCCGCGCACG . 114.0 66.0 100.0 0.0 . 87 . . Atlas-SNP KRTAP4-3 85290 hgsc.bcm.edu hg19 17 39324355 39324355 + Missense_Mutation SNP A A T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . KRTAP4-3 NM_033187 exon1 c.T70A p.C24S GGCAGCAGCTCTC . 160.0 17.0 117.0 0.0 . 40 . . Atlas-SNP EFCAB13 124989 hgsc.bcm.edu hg19 17 45507195 45507195 + Missense_Mutation SNP C C G novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . . NM_152347 exon24 c.C2506G p.L836V CAGATACTCTTAG . 108.0 9.0 87.0 0.0 . . . . Atlas-SNP BSG 682 hgsc.bcm.edu hg19 19 580781 580781 + Missense_Mutation SNP A A G novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . BSG NM_001728 exon5 c.A791G p.K264R AGGACAAGGTGAG . 94.0 6.0 64.0 0.0 . 48 . . Atlas-SNP C19orf26 255057 hgsc.bcm.edu hg19 19 1235018 1235018 + Missense_Mutation SNP G G A novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . C19orf26 NM_152769 exon5 c.C437T p.T146M TCCTGCGTCTTGC . 84.0 35.0 73.0 0.0 . 31 . . Atlas-SNP SIGLEC10 89790 hgsc.bcm.edu hg19 19 51920435 51920435 + Missense_Mutation SNP C C T novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . SIGLEC10 NM_001171161 exon2 c.G322A p.A108T TCTGCGCGTCTCT . 148.0 57.0 126.0 0.0 . 112 . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 12496 12496 + Missense_Mutation SNP T T C novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . . ENST00000361567 exon1 c.T160C p.F54L ACAATATTCATGT . 14.0 4.0 10.0 0.0 . . . . Atlas-SNP GORAB 92344 hgsc.bcm.edu hg19 1 170511631 170511636 + Frame_Shift_Del DEL GGCAAG GGCAAG - novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 GGCAAG GGCAAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . GORAB NM_152281 exon3 c.495_498del p.165_166del . . 524.0 68.0 244.0 0.0 . 41 . . Atlas-INDEL GEMIN2 8487 hgsc.bcm.edu hg19 14 39601242 39601244 + In_Frame_Del DEL AAG AAG - novel TCGA-DD-AACS-01A-11D-A40R-10 TCGA-DD-AACS-10A-01D-A40U-10 AAG AAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8d9f3207-beef-4207-90c3-219a58374551 957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7 . . NM_003616 exon8 c.713_715del p.238_239del . . 48.0 17.0 46.0 0.0 . . . . Atlas-INDEL