Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm HSPG2 3339 hgsc.bcm.edu hg19 1 22163367 22163367 + Missense_Mutation SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . HSPG2 NM_005529 exon75 c.G10283A p.G3428D TGGGTACCCCGGT . 1480.0 559.0 1385.0 0.0 . 311 . . Atlas-SNP SERBP1 26135 hgsc.bcm.edu hg19 1 67885696 67885696 + Missense_Mutation SNP T T C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . SERBP1 NM_001018067 exon6 c.A992G p.E331G ACCTCTTCACTCT . 220.0 131.0 377.0 0.0 . 31 . . Atlas-SNP SERBP1 26135 hgsc.bcm.edu hg19 1 67885701 67885701 + Missense_Mutation SNP C C G novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . SERBP1 NM_001018067 exon6 c.G987C p.K329N TTCACTCTTTGAT . 226.0 137.0 383.0 0.0 . 31 . . Atlas-SNP KPRP 448834 hgsc.bcm.edu hg19 1 152733603 152733603 + Silent SNP A A T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . KPRP NM_001025231 exon2 c.A1539T p.L513L AGACCTAGGCTGT . 128.0 39.0 106.0 0.0 . 152 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181705462 181705462 + Missense_Mutation SNP G G T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . CACNA1E NM_001205293 exon22 c.G3314T p.R1105I AGATCAGAGAGGA . 165.0 58.0 178.0 0.0 . 778 . . Atlas-SNP PM20D1 148811 hgsc.bcm.edu hg19 1 205811830 205811830 + Missense_Mutation SNP T T A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . PM20D1 NM_152491 exon7 c.A877T p.T293S ATACAGTCACCAC . 44.0 13.0 40.0 0.0 . 56 . . Atlas-SNP OR2T11 127077 hgsc.bcm.edu hg19 1 248790047 248790047 + Missense_Mutation SNP C C G novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . OR2T11 NM_001001964 exon1 c.G383C p.R128T GGGTATCTCAGAG . 182.0 69.0 169.0 0.0 . 64 . . Atlas-SNP NTSR2 23620 hgsc.bcm.edu hg19 2 11798694 11798694 + Missense_Mutation SNP G G A rs77419493 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . NTSR2 NM_012344 exon4 c.C1144T p.P382S TCATGGGGTGGTG . 92.0 20.0 96.0 0.0 . 36 . G|0.997;T|0.003 Atlas-SNP NTSR2 23620 hgsc.bcm.edu hg19 2 11798695 11798695 + Missense_Mutation SNP G G T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . NTSR2 NM_012344 exon4 c.C1143A p.H381Q CATGGGGTGGTGC . 92.0 21.0 95.0 0.0 . 36 . . Atlas-SNP FAM84A 151354 hgsc.bcm.edu hg19 2 14774464 14774464 + Nonsense_Mutation SNP G G T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . FAM84A NM_145175 exon2 c.G361T p.E121X CTCTGCGAACCCG . 96.0 4.0 83.0 0.0 . 23 . . Atlas-SNP NRXN1 9378 hgsc.bcm.edu hg19 2 50463932 50463932 + Missense_Mutation SNP G G T rs377333818 TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a NRXN1_ENST00000536085,colon,carcinoma,+2,8 NRXN1 NM_001135659 exon19 c.C3661A p.H1221N CTATATGCAGTTC . 151.0 75.0 147.0 0.0 . 1118 . . Atlas-SNP UGP2 7360 hgsc.bcm.edu hg19 2 64112930 64112930 + Silent SNP G G A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . UGP2 NM_006759 exon6 c.G783A p.L261L GGATCTGTATATT . 121.0 20.0 152.0 0.0 . 38 . . Atlas-SNP CTNNA2 1496 hgsc.bcm.edu hg19 2 80816462 80816462 + Missense_Mutation SNP G G A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . CTNNA2 NM_001164883 exon15 c.G2041A p.A681T GAGAAGGCAAAAA . 274.0 66.0 327.0 0.0 . 462 . . Atlas-SNP FAHD2A 51011 hgsc.bcm.edu hg19 2 96072725 96072725 + Silent SNP G G A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . FAHD2A NM_016044 exon3 c.G282A p.S94S ACGGTCGGAGGTA . 343.0 146.0 415.0 0.0 . 25 . . Atlas-SNP ST6GAL2 84620 hgsc.bcm.edu hg19 2 107459494 107459494 + Missense_Mutation SNP T T A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ST6GAL2 NM_032528 exon2 c.A940T p.I314L TACCTATTTCCTC . 182.0 45.0 173.0 0.0 . 159 . . Atlas-SNP ZC3H6 376940 hgsc.bcm.edu hg19 2 113082111 113082111 + Missense_Mutation SNP T T C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ZC3H6 NM_198581 exon10 c.T1723C p.Y575H TCATCATACCAGC . 211.0 64.0 219.0 0.0 . 93 . . Atlas-SNP DNAH7 56171 hgsc.bcm.edu hg19 2 196636524 196636524 + Missense_Mutation SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a DNAH7,colon,carcinoma,0,1 DNAH7 NM_018897 exon61 c.G11293A p.D3765N CGATGTCGAAGTT . 136.0 39.0 141.0 0.0 . 512 . . Atlas-SNP DNAH7 56171 hgsc.bcm.edu hg19 2 196912120 196912120 + Missense_Mutation SNP A A T rs372676468 alternate_allele TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . DNAH7 NM_018897 exon5 c.T354A p.H118Q TTCTTTATGTGGA . 104.0 33.0 132.0 0.0 . 512 . . Atlas-SNP GMPPA 29926 hgsc.bcm.edu hg19 2 220370997 220370997 + Missense_Mutation SNP A A T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . GMPPA NM_205847 exon12 c.A1015T p.S339C CTGCATAGCATCG . 46.0 11.0 66.0 0.0 . 50 . . Atlas-SNP SLC4A3 6508 hgsc.bcm.edu hg19 2 220500393 220500393 + Splice_Site SNP A A T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . SLC4A3 NM_005070 exon14 c.1973-2A>T . TCCCCCAGAACTG . 63.0 20.0 90.0 0.0 . 144 . . Atlas-SNP ECEL1 9427 hgsc.bcm.edu hg19 2 233346334 233346334 + Missense_Mutation SNP T T A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ECEL1 NM_004826 exon14 c.A1871T p.Q624L TCATACTGGCCCC . 50.0 15.0 60.0 0.0 . 73 . . Atlas-SNP FANCD2OS 115795 hgsc.bcm.edu hg19 3 10145989 10145989 + Missense_Mutation SNP C C A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a C3orf24,NS,carcinoma,0,1 . NM_001164839 exon2 c.G470T p.R157L ATAGAGCGCAGCA . 80.0 4.0 73.0 0.0 . . . . Atlas-SNP CAND2 23066 hgsc.bcm.edu hg19 3 12857490 12857490 + Missense_Mutation SNP T T C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . CAND2 NM_001162499 exon9 c.T1424C p.M475T AGCATATGCCTGT . 164.0 11.0 154.0 0.0 . 138 . . Atlas-SNP ZCWPW2 152098 hgsc.bcm.edu hg19 3 28476731 28476731 + Missense_Mutation SNP T T A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ZCWPW2 NM_001040432 exon3 c.T463A p.F155I GCAACATTCGTTG . 429.0 162.0 378.0 0.0 . 49 . . Atlas-SNP EPM2AIP1 9852 hgsc.bcm.edu hg19 3 37033938 37033938 + Missense_Mutation SNP T T C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . EPM2AIP1 NM_014805 exon1 c.A631G p.I211V TGATTATGGTCAG . 146.0 59.0 96.0 0.0 . 47 . . Atlas-SNP ACAD9 28976 hgsc.bcm.edu hg19 3 128621398 128621398 + Silent SNP G G C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ACAD9 NM_014049 exon9 c.G885C p.V295V GCAGGTGGCCATG . 122.0 34.0 104.0 0.0 . 51 . . Atlas-SNP CHRD 8646 hgsc.bcm.edu hg19 3 184101425 184101425 + Missense_Mutation SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . CHRD NM_003741 exon12 c.C1435T p.H479Y GGAGGACACACGG . 95.0 38.0 112.0 0.0 . 149 . . Atlas-SNP HTT 3064 hgsc.bcm.edu hg19 4 3131687 3131687 + Nonsense_Mutation SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . HTT NM_002111 exon13 c.C1780T p.Q594X GGCCTGCAGATTG . 80.0 41.0 103.0 0.0 . 221 . . Atlas-SNP NKX3-2 579 hgsc.bcm.edu hg19 4 13544068 13544068 + Missense_Mutation SNP C C A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . NKX3-2 NM_001189 exon2 c.G551T p.G184V CCGCCCCCGCCGC . 498.0 313.0 812.0 2.0 . 15 . . Atlas-SNP FAM172A 83989 hgsc.bcm.edu hg19 5 93294536 93294536 + Silent SNP T T A rs375944243 alternate_allele TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . FAM172A NM_032042 exon6 c.A513T p.I171I TTCATTTATAATA . 251.0 92.0 202.0 0.0 . 38 . . Atlas-SNP PPIP5K2 23262 hgsc.bcm.edu hg19 5 102515808 102515808 + Missense_Mutation SNP G G C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . PPIP5K2 NM_015216 exon23 c.G2841C p.L947F GATATTGTTTAAA . 193.0 8.0 164.0 0.0 . 98 . . Atlas-SNP PCDHB13 56123 hgsc.bcm.edu hg19 5 140594106 140594106 + Silent SNP A A G novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . PCDHB13 NM_018933 exon1 c.A411G p.K137K GGACAAACAAATG . 698.0 209.0 649.0 0.0 . 142 . . Atlas-SNP PCDHGA1 56114 hgsc.bcm.edu hg19 5 140712001 140712001 + Missense_Mutation SNP C C A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . PCDHGA1 NM_018912 exon1 c.C1750A p.P584T GCAGAGCCCGGCT . 108.0 35.0 89.0 0.0 . 397 . . Atlas-SNP PCDH12 51294 hgsc.bcm.edu hg19 5 141335502 141335502 + Missense_Mutation SNP G G A rs370147049 TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . PCDH12 NM_016580 exon1 c.C1915T p.R639C CACTGCGGATGCT . 67.0 25.0 72.0 0.0 . 133 . . Atlas-SNP PPARGC1B 133522 hgsc.bcm.edu hg19 5 149216515 149216515 + Missense_Mutation SNP G G A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . PPARGC1B NM_133263 exon8 c.G2497A p.D833N TGCTCTGACCACT . 89.0 14.0 73.0 0.0 . 74 . . Atlas-SNP DOCK2 1794 hgsc.bcm.edu hg19 5 169230174 169230174 + Silent SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . DOCK2 NM_004946 exon26 c.C2667T p.L889L ATTGCTCAACAGC . 204.0 73.0 148.0 0.0 . 389 . . Atlas-SNP HK3 3101 hgsc.bcm.edu hg19 5 176314451 176314451 + Splice_Site SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . HK3 NM_002115 exon12 c.1600+1G>A . TCCTTACCGCTGC . 75.0 30.0 75.0 0.0 . 210 . . Atlas-SNP IRF4 3662 hgsc.bcm.edu hg19 6 405053 405053 + Missense_Mutation SNP C C A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . IRF4 NM_002460 exon8 c.C1135A p.P379T TCCCTGCCAAGAT . 60.0 15.0 48.0 0.0 . 65 . . Atlas-SNP TDP2 51567 hgsc.bcm.edu hg19 6 24666984 24666984 + Missense_Mutation SNP G G A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . TDP2 NM_016614 exon1 c.C107T p.A36V CAGCTTGCGACCG . 104.0 45.0 119.0 0.0 . 29 . . Atlas-SNP TINAG 27283 hgsc.bcm.edu hg19 6 54214615 54214615 + Missense_Mutation SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . TINAG NM_014464 exon7 c.C1001T p.A334V GGCATGCCACGAA . 173.0 73.0 160.0 0.0 . 102 . . Atlas-SNP COL19A1 1310 hgsc.bcm.edu hg19 6 70733546 70733546 + Missense_Mutation SNP G G T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . COL19A1 NM_001858 exon12 c.G1054T p.A352S GATCCAGCTCTGG . 104.0 28.0 122.0 0.0 . 232 . . Atlas-SNP KLHL32 114792 hgsc.bcm.edu hg19 6 97533088 97533088 + Missense_Mutation SNP C C G novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . KLHL32 NM_052904 exon6 c.C498G p.F166L CGATTTCTTAGTG . 79.0 7.0 103.0 0.0 . 85 . . Atlas-SNP GPRC6A 222545 hgsc.bcm.edu hg19 6 117150058 117150058 + Missense_Mutation SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . GPRC6A NM_148963 exon1 c.G119A p.G40D AACAAACCTCCAA . 138.0 32.0 180.0 0.0 . 152 . . Atlas-SNP RP9 6100 hgsc.bcm.edu hg19 7 33134956 33134956 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . RP9 NM_203288 exon6 c.A556T p.K186X TTTTCTTGTGTTT . 430.0 147.0 378.0 0.0 . 19 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48315128 48315128 + Silent SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ABCA13 NM_152701 exon17 c.C5865T p.I1955I GCAAATCATAGAA . 223.0 32.0 154.0 0.0 . 1192 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82582848 82582848 + Missense_Mutation SNP G G T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . PCLO NM_014510 exon5 c.C7421A p.P2474H GTAACAGGTAATC . 123.0 45.0 97.0 0.0 . 1506 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82764321 82764321 + Missense_Mutation SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a Q9Y6V0-3,colon,carcinoma,0,3 PCLO NM_014510 exon3 c.G2545A p.V849I TTTGTACGGGGTC . 192.0 72.0 184.0 0.0 . 1506 . . Atlas-SNP FZD3 7976 hgsc.bcm.edu hg19 8 28385158 28385158 + Missense_Mutation SNP A A G novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a .,1 FZD3 NM_017412 exon5 c.A881G p.Y294C TACTCTATTTTTT . 78.0 51.0 104.0 0.0 . 65 . . Atlas-SNP ASH2L 9070 hgsc.bcm.edu hg19 8 37978484 37978484 + Missense_Mutation SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ASH2L NM_004674 exon10 c.C982T p.H328Y CCCCCTCATGGCT . 183.0 38.0 103.0 0.0 . 62 . . Atlas-SNP ADAM9 8754 hgsc.bcm.edu hg19 8 38913107 38913107 + Silent SNP A A T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ADAM9 NM_003816 exon14 c.A1407T p.G469G TCCAGGAGGTACT . 183.0 98.0 113.0 0.0 . 66 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77766536 77766536 + Missense_Mutation SNP G G T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ZFHX4 NM_024721 exon10 c.G7379T p.G2460V TTATCGGAAGACC . 110.0 7.0 105.0 0.0 . 878 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113812467 113812467 + Missense_Mutation SNP G G T rs201411480 bycluster;by1000genomes;alternate_allele TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . CSMD3 NM_198123 exon13 c.C1896A p.S632R ACTCATGCTCACT . 121.0 48.0 89.0 0.0 . 2325 . G|1.000;A|0.000 Atlas-SNP PTPN3 5774 hgsc.bcm.edu hg19 9 112190926 112190926 + Missense_Mutation SNP A A C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . PTPN3 NM_001145368 exon11 c.T803G p.F268C ATGAAGAACTTTT . 44.0 32.0 79.0 0.0 . 106 . . Atlas-SNP OR1J2 26740 hgsc.bcm.edu hg19 9 125273731 125273731 + Silent SNP A A T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . OR1J2 NM_054107 exon1 c.A651T p.S217S GGTATCATATGGC . 99.0 69.0 138.0 0.0 . 64 . . Atlas-SNP ANK3 288 hgsc.bcm.edu hg19 10 61833947 61833947 + Missense_Mutation SNP T T A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a ANK3,NS,carcinoma,-1,1 ANK3 NM_020987 exon37 c.A6692T p.N2231I ACCCGATTGTGGT . 96.0 19.0 107.0 0.0 . 703 . . Atlas-SNP JMJD1C 221037 hgsc.bcm.edu hg19 10 64968996 64968996 + Splice_Site SNP C C A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . JMJD1C NM_032776 exon10 c.2695-1G>T . AGAATTCTATTAA . 102.0 49.0 108.0 0.0 . 347 . . Atlas-SNP LIPF 8513 hgsc.bcm.edu hg19 10 90431671 90431671 + Silent SNP T T C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . LIPF NM_001198829 exon7 c.T648C p.Y216Y GAAGTATACAAAA . 122.0 65.0 136.0 0.0 . 62 . . Atlas-SNP ENTPD7 57089 hgsc.bcm.edu hg19 10 101455831 101455831 + Missense_Mutation SNP G G C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ENTPD7 NM_020354 exon9 c.G962C p.R321P TTGCCCGGCAGCG . 124.0 61.0 166.0 0.0 . 44 . . Atlas-SNP CYP17A1 1586 hgsc.bcm.edu hg19 10 104597106 104597106 + Missense_Mutation SNP C C G novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . CYP17A1 NM_000102 exon1 c.G13C p.V5L GAGCCACGAGCTC . 49.0 14.0 56.0 0.0 . 48 . . Atlas-SNP CHST15 51363 hgsc.bcm.edu hg19 10 125798100 125798100 + Missense_Mutation SNP G G A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . CHST15 NM_014863 exon5 c.C1121T p.T374M TCCTGCGTCAGAA . 109.0 33.0 187.0 0.0 . 134 . . Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 135012081 135012081 + Splice_Site SNP G G A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . KNDC1 NM_152643 exon14 c.2070-1G>A . CCCGTAGGGACCA . 187.0 107.0 231.0 0.0 . 155 . . Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 135012082 135012082 + Missense_Mutation SNP G G T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . KNDC1 NM_152643 exon14 c.G2070T p.R690S CCGTAGGGACCAG . 186.0 102.0 231.0 0.0 . 155 . . Atlas-SNP RBMXL2 27288 hgsc.bcm.edu hg19 11 7110726 7110726 + Silent SNP C C T rs369241566 TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . RBMXL2 NM_014469 exon1 c.C375T p.G125G CCGGGGCGGGCCC . 22.0 14.0 4.0 0.0 . 47 . . Atlas-SNP PPFIBP2 8495 hgsc.bcm.edu hg19 11 7618805 7618805 + Silent SNP A A G novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . PPFIBP2 NM_003621 exon5 c.A387G p.T129T CCTCACAGACCAA . 87.0 37.0 92.0 0.0 . 87 . . Atlas-SNP DCDC5 100506627 hgsc.bcm.edu hg19 11 30938526 30938526 + Missense_Mutation SNP G G A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . DCDC5 NM_020869 exon7 c.C664T p.P222S ACCTGGGAAGTGT . 147.0 14.0 131.0 0.0 . 137 . . Atlas-SNP PATL1 219988 hgsc.bcm.edu hg19 11 59423093 59423093 + Missense_Mutation SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . PATL1 NM_152716 exon8 c.G934A p.A312T CTGGTGCTGGGGG . 81.0 30.0 88.0 0.0 . 92 . . Atlas-SNP SLC22A10 387775 hgsc.bcm.edu hg19 11 63071682 63071682 + Missense_Mutation SNP T T C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . SLC22A10 NM_001039752 exon8 c.T1388C p.V463A CCACTGTTCTCAG . 64.0 18.0 45.0 0.0 . 79 . . Atlas-SNP CATSPER1 117144 hgsc.bcm.edu hg19 11 65784577 65784577 + Missense_Mutation SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . CATSPER1 NM_053054 exon11 c.G2270A p.R757H TGGGAGCGGAACT . 56.0 20.0 44.0 0.0 . 101 . . Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92616054 92616054 + Missense_Mutation SNP G G T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . FAT3 NM_001008781 exon23 c.G12432T p.Q4144H TATCCAGGCTGGC . 95.0 25.0 110.0 0.0 . 1822 . . Atlas-SNP HEPHL1 341208 hgsc.bcm.edu hg19 11 93796813 93796813 + Silent SNP G G A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a HEPHL1,right_upper_lobe,carcinoma,0,1 HEPHL1 NM_001098672 exon3 c.G555A p.V185V CTGGGTGTACCAT . 170.0 10.0 154.0 0.0 . 144 . . Atlas-SNP MMP20 9313 hgsc.bcm.edu hg19 11 102487623 102487623 + Silent SNP A A T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . MMP20 NM_004771 exon2 c.T294A p.P98P ACAGCGAGGCTTC . 198.0 78.0 170.0 0.0 . 52 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103091404 103091404 + Missense_Mutation SNP T T C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . DYNC2H1 NM_001377 exon57 c.T8999C p.L3000P AATCACTTTCAGA . 143.0 6.0 118.0 0.0 . 246 . . Atlas-SNP MSANTD4 84437 hgsc.bcm.edu hg19 11 105881275 105881275 + Missense_Mutation SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . . NM_032424 exon2 c.G370A p.D124N GCCAGTCAAAATT . 147.0 10.0 104.0 0.0 . . . . Atlas-SNP TMEM45B 120224 hgsc.bcm.edu hg19 11 129722516 129722516 + Missense_Mutation SNP A A G novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . TMEM45B NM_138788 exon2 c.A139G p.I47V CTCGAGATCGTCG . 157.0 63.0 170.0 0.0 . 25 . . Atlas-SNP C1RL 51279 hgsc.bcm.edu hg19 12 7261740 7261740 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . C1RL NM_016546 exon1 c.A37T p.R13X GGCTTCTCCAGAG . 73.0 25.0 88.0 0.0 . 39 . . Atlas-SNP ACSM4 341392 hgsc.bcm.edu hg19 12 7479610 7479610 + Missense_Mutation SNP G G T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ACSM4 NM_001080454 exon12 c.G1575T p.K525N CTTTAAGTCCTAC . 87.0 24.0 90.0 0.0 . 98 . . Atlas-SNP WIF1 11197 hgsc.bcm.edu hg19 12 65471574 65471574 + Missense_Mutation SNP G G T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . WIF1 NM_007191 exon3 c.C349A p.P117T CGGTTGGATCTGC . 130.0 47.0 115.0 0.0 . 96 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 70986218 70986218 + Missense_Mutation SNP G G T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . PTPRB NM_001109754 exon7 c.C1624A p.L542M GAGACAGGGTGAT . 140.0 49.0 165.0 0.0 . 676 . . Atlas-SNP SLC41A2 84102 hgsc.bcm.edu hg19 12 105289099 105289099 + Missense_Mutation SNP G G C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . SLC41A2 NM_032148 exon3 c.C688G p.P230A CAATGGGTGAATC . 85.0 5.0 89.0 0.0 . 66 . . Atlas-SNP PIWIL1 9271 hgsc.bcm.edu hg19 12 130847644 130847644 + Missense_Mutation SNP T T C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . PIWIL1 NM_004764 exon18 c.T2150C p.V717A ACGAAGTGCCACA . 151.0 7.0 142.0 0.0 . 157 . . Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23909599 23909599 + Missense_Mutation SNP T T C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . SACS NM_014363 exon10 c.A8416G p.M2806V TATCCATAGTATA . 44.0 24.0 44.0 0.0 . 871 . . Atlas-SNP OR4K1 79544 hgsc.bcm.edu hg19 14 20404228 20404228 + Missense_Mutation SNP A A T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . OR4K1 NM_001004063 exon1 c.A403T p.I135F AGTACAATTATGA . 102.0 42.0 131.0 0.0 . 108 . . Atlas-SNP MAPK1IP1L 93487 hgsc.bcm.edu hg19 14 55529487 55529487 + Missense_Mutation SNP C C A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . MAPK1IP1L NM_144578 exon3 c.C170A p.A57E CAAGTGCAACACC . 108.0 5.0 136.0 0.0 . 14 . . Atlas-SNP DACT1 51339 hgsc.bcm.edu hg19 14 59112146 59112146 + Missense_Mutation SNP T T C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . DACT1 NM_016651 exon4 c.T805C p.Y269H TATCGCTATCCCA . 104.0 17.0 130.0 0.0 . 119 . . Atlas-SNP BTBD7 55727 hgsc.bcm.edu hg19 14 93712481 93712481 + Missense_Mutation SNP A A C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . BTBD7 NM_001002860 exon10 c.T2273G p.L758W GGGGGCAAGGGTG . 135.0 10.0 134.0 0.0 . 112 . . Atlas-SNP ATP10A 57194 hgsc.bcm.edu hg19 15 25959142 25959142 + Missense_Mutation SNP C C G novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ATP10A NM_024490 exon10 c.G2023C p.D675H AGTTGTCCGCCTG . 50.0 16.0 51.0 0.0 . 270 . . Atlas-SNP CTDSPL2 51496 hgsc.bcm.edu hg19 15 44783063 44783063 + Missense_Mutation SNP A A T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . CTDSPL2 NM_016396 exon5 c.A557T p.E186V TGGATGAGATCAC . 429.0 158.0 387.0 1.0 . 31 . . Atlas-SNP CYP11A1 1583 hgsc.bcm.edu hg19 15 74637456 74637456 + Missense_Mutation SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a CYP11A1,bladder,carcinoma,-1,2 CYP11A1 NM_000781 exon3 c.G554A p.R185H TTGATGCGCCTGT . 126.0 27.0 116.0 0.0 . 54 . . Atlas-SNP IQGAP1 8826 hgsc.bcm.edu hg19 15 90977012 90977012 + Missense_Mutation SNP G G C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a IQGAP1,NS,carcinoma,0,1 IQGAP1 NM_003870 exon5 c.G452C p.C151S TCTACTGTATCCA . 150.0 48.0 114.0 0.0 . 140 . . Atlas-SNP MCTP2 55784 hgsc.bcm.edu hg19 15 95001427 95001427 + Missense_Mutation SNP T T C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . MCTP2 NM_018349 exon19 c.T2312C p.V771A CAACTGTTCAAAA . 170.0 41.0 144.0 0.0 . 122 . . Atlas-SNP PPL 5493 hgsc.bcm.edu hg19 16 4937194 4937194 + Missense_Mutation SNP T T A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . PPL NM_002705 exon21 c.A2549T p.Y850F ATGGCATAAACTT . 59.0 32.0 79.0 0.0 . 168 . . Atlas-SNP ACSM2A 123876 hgsc.bcm.edu hg19 16 20497911 20497911 + Missense_Mutation SNP A A C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ACSM2A NM_001010845 exon15 c.A1645C p.N549H GTCTTGAACCTGC . 110.0 71.0 183.0 0.0 . 120 . . Atlas-SNP ZNF423 23090 hgsc.bcm.edu hg19 16 49660081 49660081 + Nonsense_Mutation SNP C C A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ZNF423 NM_015069 exon5 c.G3577T p.E1193X TCTTACCAATCAT . 62.0 43.0 124.0 0.0 . 463 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577545 7577545 + Missense_Mutation SNP T T C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a TP53_ENST00000545858,rectum,carcinoma,0,6 TP53 NM_000546 exon7 c.A736G p.M246V GGTTCATGCCGCC . 68.0 39.0 123.0 0.0 . 33396 . . Atlas-SNP GJD3 125111 hgsc.bcm.edu hg19 17 38519621 38519621 + Silent SNP G G A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . GJD3 NM_152219 exon1 c.C447T p.T149T CAGGAAGGTCAGC . 32.0 12.0 20.0 0.0 . 2 . . Atlas-SNP SMCHD1 23347 hgsc.bcm.edu hg19 18 2762109 2762109 + Missense_Mutation SNP G G A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . SMCHD1 NM_015295 exon36 c.G4441A p.V1481I GTTATAGTTGAAG . 139.0 59.0 157.0 0.0 . 88 . . Atlas-SNP RFX2 5990 hgsc.bcm.edu hg19 19 6013025 6013025 + Silent SNP G G T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . RFX2 NM_000635 exon8 c.C871A p.R291R GCTGCCGCATGGC . 28.0 21.0 39.0 0.0 . 60 . . Atlas-SNP CLEC4G 339390 hgsc.bcm.edu hg19 19 7795018 7795018 + Missense_Mutation SNP A A T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . CLEC4G NM_198492 exon7 c.T514A p.F172I CCTCGAAGGACAG . 89.0 5.0 134.0 0.0 . 18 . . Atlas-SNP ZNF844 284391 hgsc.bcm.edu hg19 19 12186502 12186502 + Silent SNP A A T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . ZNF844 NM_001136501 exon4 c.A567T p.I189I CATGATAATGCAC . 104.0 11.0 182.0 0.0 . 69 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38979817 38979817 + Missense_Mutation SNP G G T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . RYR1 NM_001042723 exon35 c.G5548T p.V1850L CTGTAGGTGATGG . 38.0 23.0 60.0 0.0 . 708 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38995537 38995537 + Silent SNP T T A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . RYR1 NM_001042723 exon51 c.T8217A p.P2739P CCGGCCTGTGGAG . 81.0 57.0 104.0 0.0 . 708 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 39009927 39009927 + Silent SNP G G A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . RYR1 NM_001042723 exon67 c.G10092A p.R3364R CGGGCGGCTGCGC . 103.0 75.0 144.0 0.0 . 708 . . Atlas-SNP MKKS 8195 hgsc.bcm.edu hg19 20 10393861 10393861 + Missense_Mutation SNP T T C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . MKKS NM_170784 exon3 c.A302G p.N101S ATCAGGTTGCAGC . 125.0 50.0 114.0 0.0 . 35 . . Atlas-SNP MYH7B 57644 hgsc.bcm.edu hg19 20 33578100 33578100 + Missense_Mutation SNP C C T novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . MYH7B NM_020884 exon22 c.C2090T p.S697F CGGTGTCCCAGCT . 136.0 26.0 136.0 0.0 . 145 . . Atlas-SNP SALL4 57167 hgsc.bcm.edu hg19 20 50406736 50406736 + Missense_Mutation SNP G G C novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . SALL4 NM_020436 exon2 c.C2286G p.D762E GGATGAGTCGTTG . 140.0 38.0 111.0 0.0 . 168 . . Atlas-SNP SLC5A1 6523 hgsc.bcm.edu hg19 22 32464553 32464553 + Missense_Mutation SNP T T A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . SLC5A1 NM_000343 exon5 c.T443A p.L148Q CCCTTCTGTCCCT . 87.0 32.0 89.0 0.0 . 80 . . Atlas-SNP CXorf36 79742 hgsc.bcm.edu hg19 X 45051186 45051186 + Missense_Mutation SNP T T A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . CXorf36 NM_176819 exon2 c.A308T p.D103V GAATCATCTGAGT . 62.0 51.0 47.0 0.0 . 53 . . Atlas-SNP KIAA2022 340533 hgsc.bcm.edu hg19 X 73962219 73962219 + Nonsense_Mutation SNP C C A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . KIAA2022 NM_001008537 exon3 c.G2173T p.E725X TAGCTTCACTTTT . 65.0 6.0 51.0 0.0 . 262 . . Atlas-SNP MAGEE2 139599 hgsc.bcm.edu hg19 X 75004522 75004522 + Missense_Mutation SNP G G A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . MAGEE2 NM_138703 exon1 c.C365T p.S122L TGATCTGAGTACT . 100.0 10.0 60.0 0.0 . 94 . . Atlas-SNP KIAA1210 57481 hgsc.bcm.edu hg19 X 118222963 118222963 + Missense_Mutation SNP T T A novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . KIAA1210 NM_020721 exon11 c.A2230T p.S744C AAACACTTGCTGT . 93.0 12.0 96.0 0.0 . 171 . . Atlas-SNP SLITRK2 84631 hgsc.bcm.edu hg19 X 144904522 144904522 + Silent SNP A A G novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . SLITRK2 NM_001144005 exon5 c.A579G p.L193L TAGGCTAAAAGTA . 100.0 24.0 104.0 0.0 . 221 . . Atlas-SNP FANCM 57697 hgsc.bcm.edu hg19 14 45650891 45650891 + Frame_Shift_Del DEL A A - novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . FANCM NM_020937 exon16 c.4368delC p.R1456fs . . 151.0 31.0 152.0 0.0 . 225 . . Atlas-INDEL AHNAK 79026 hgsc.bcm.edu hg19 11 62288775 62288782 + Frame_Shift_Del DEL TTGGACCC TTGGACCC - novel TCGA-DD-AACU-01A-11D-A40R-10 TCGA-DD-AACU-10A-01D-A40U-10 TTGGACCC TTGGACCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9d326320-5639-47af-8d15-1638282ab9d8 7534c02c-55eb-4c65-97dd-31520dc6d63a . AHNAK NM_001620 exon5 c.13108_13115del p.4370_4372del . . 150.0 13.0 131.0 0.0 . 532 . . Atlas-INDEL