Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
VPS13D	55187	hgsc.bcm.edu	hg19	1	12368658	12368658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	VPS13D	NM_015378	exon27	c.C6610T	p.P2204S	ACCGAGCCTTGTA	.	218.0	107.0	134.0	0.0	.	316	.	.	Atlas-SNP
SLC9A1	6548	hgsc.bcm.edu	hg19	1	27434282	27434282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	SLC9A1	NM_003047	exon4	c.A1139G	p.K380R	AAGTATTTGATGG	.	103.0	53.0	78.0	0.0	.	68	.	.	Atlas-SNP
NTNG1	22854	hgsc.bcm.edu	hg19	1	107937924	107937924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	NTNG1	NM_014917	exon4	c.A1036G	p.I346V	CTCCCCATCCCCA	.	156.0	68.0	101.0	0.0	.	274	.	.	Atlas-SNP
TARS2	80222	hgsc.bcm.edu	hg19	1	150471453	150471453	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	TARS2	NM_025150	exon12	c.G1482A	p.L494L	GGCACTGTCCACC	.	108.0	49.0	66.0	0.0	.	91	.	.	Atlas-SNP
IL6R	3570	hgsc.bcm.edu	hg19	1	154422417	154422417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	IL6R	NM_000565	exon8	c.A1027G	p.I343V	GATAATATTCTCT	.	147.0	72.0	63.0	0.0	.	47	.	.	Atlas-SNP
OR10Z1	128368	hgsc.bcm.edu	hg19	1	158576368	158576368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	OR10Z1	NM_001004478	exon1	c.T140C	p.I47T	TTATCATAGCCAT	.	163.0	66.0	97.0	0.0	.	99	.	.	Atlas-SNP
RGS4	5999	hgsc.bcm.edu	hg19	1	163044190	163044190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	RGS4	NM_001102445	exon6	c.A749G	p.Q250R	AGGCCCAGAAGAA	.	183.0	95.0	101.0	0.0	.	97	.	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	hg19	1	167064149	167064149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	DUSP27	NM_001080426	exon1	c.C63A	p.N21K	AGCCAACGTGAGG	.	361.0	169.0	230.0	0.0	.	235	.	.	Atlas-SNP
MIA3	375056	hgsc.bcm.edu	hg19	1	222801064	222801064	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	MIA3	NM_198551	exon4	c.A502T	p.N168Y	GAAAAAAACCCTG	.	363.0	173.0	216.0	0.0	.	167	.	.	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	hg19	1	225533932	225533932	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	DNAH14	NM_001373	exon68	c.A10668G	p.Q3556Q	AGAACAAGAACAT	.	204.0	97.0	182.0	0.0	.	300	.	.	Atlas-SNP
COLEC11	78989	hgsc.bcm.edu	hg19	2	3691387	3691387	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	COLEC11	NM_001255985	exon8	c.C537T	p.D179D	CGCGGACGCCCAG	.	162.0	76.0	129.0	0.0	.	93	.	.	Atlas-SNP
WDR92	116143	hgsc.bcm.edu	hg19	2	68384452	68384452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	WDR92	NM_001256476	exon1	c.G124A	p.G42S	CGGTGCCCCGTGC	.	99.0	48.0	87.0	0.0	.	21	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613036	73613036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	ALMS1	NM_015120	exon1	c.G40C	p.E14Q	CTGGAGGAGGAGG	.	266.0	20.0	129.0	0.0	.	384	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613037	73613037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	ALMS1	NM_015120	exon1	c.A41T	p.E14V	TGGAGGAGGAGGA	.	268.0	23.0	130.0	0.0	.	384	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220326770	220326770	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	SPEG	NM_005876	exon7	c.C2607A	p.P869P	ACCCCCCACCTTC	.	97.0	51.0	85.0	0.0	.	272	.	.	Atlas-SNP
VPRBP	9730	hgsc.bcm.edu	hg19	3	51505011	51505011	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	VPRBP	NM_014703	exon4	c.T121A	p.L41M	CAATCAATTGAGA	.	112.0	54.0	64.0	0.0	.	107	.	.	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	hg19	3	62467427	62467427	+	Silent	SNP	C	C	T	rs368961255		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	CADPS	NM_003716	exon22	c.G3144A	p.P1048P	CCATGACGGTGCC	.	186.0	72.0	161.0	0.0	.	387	.	.	Atlas-SNP
MORC1	27136	hgsc.bcm.edu	hg19	3	108698449	108698449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	MORC1	NM_014429	exon24	c.G2390A	p.S797N	CTGCCACTCACAG	.	134.0	57.0	98.0	0.0	.	211	.	.	Atlas-SNP
CD200R1	131450	hgsc.bcm.edu	hg19	3	112647737	112647737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	CD200R1	NM_138806	exon5	c.A695T	p.H232L	ACATTGTGGACCT	.	149.0	82.0	104.0	0.0	.	91	.	.	Atlas-SNP
STXBP5L	9515	hgsc.bcm.edu	hg19	3	120998775	120998775	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	STXBP5L	NM_014980	exon19	c.T2082A	p.S694S	ACGGTCTCCTCGA	.	151.0	77.0	115.0	0.0	.	159	.	.	Atlas-SNP
STAG1	10274	hgsc.bcm.edu	hg19	3	136060292	136060292	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	STAG1	NM_005862	exon31	c.G3548C	p.R1183T	GCATGCCTCACTC	.	74.0	36.0	47.0	0.0	.	135	.	.	Atlas-SNP
ZBTB38	253461	hgsc.bcm.edu	hg19	3	141161744	141161744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	ZBTB38	NM_001080412	exon8	c.G514A	p.E172K	ATCATCGAAACAG	.	144.0	74.0	103.0	0.0	.	92	.	.	Atlas-SNP
AGTR1	185	hgsc.bcm.edu	hg19	3	148459155	148459155	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	AGTR1	NM_031850	exon4	c.C438G	p.N146K	TTTCAACCTGTAC	.	64.0	28.0	52.0	0.0	.	63	.	.	Atlas-SNP
CP	1356	hgsc.bcm.edu	hg19	3	148905856	148905856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	CP	NM_000096	exon10	c.A1847G	p.E616G	TTAGATTCCTGAA	.	80.0	36.0	73.0	0.0	.	112	.	.	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	hg19	3	151171320	151171320	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	IGSF10	NM_178822	exon3	c.C567T	p.F189F	GTATAGGAACTTA	.	225.0	90.0	163.0	0.0	.	279	.	.	Atlas-SNP
ABCF3	55324	hgsc.bcm.edu	hg19	3	183907511	183907511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	ABCF3	NM_018358	exon13	c.A1280G	p.Y427C	GTGAATATGAGGC	.	91.0	61.0	44.0	0.0	.	72	.	.	Atlas-SNP
PDLIM5	10611	hgsc.bcm.edu	hg19	4	95539284	95539284	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	PDLIM5	NM_001256426	exon12	c.G1137A	p.K379K	CTTCAAGCCTGTA	.	118.0	110.0	180.0	0.0	.	76	.	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26988368	26988368	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	CDH9	NM_016279	exon2	c.C73T	p.Q25X	TTTCTTGTAATAG	.	230.0	50.0	113.0	0.0	.	305	.	.	Atlas-SNP
OR2J3	442186	hgsc.bcm.edu	hg19	6	29079833	29079833	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	OR2J3	NM_001005216	exon1	c.T166G	p.S56A	CTGGACTCCCATC	.	158.0	85.0	122.0	0.0	.	53	.	.	Atlas-SNP
TFEB	7942	hgsc.bcm.edu	hg19	6	41652806	41652806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	TFEB	NM_001167827	exon9	c.T1004C	p.M335T	GCCTGCATCTCCA	.	149.0	77.0	120.0	0.0	.	37	.	.	Atlas-SNP
GRIK2	2898	hgsc.bcm.edu	hg19	6	102503262	102503262	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	GRIK2	NM_021956	exon15	c.A2369C	p.K790T	AAGGCAAACTGCA	.	149.0	62.0	97.0	0.0	.	487	.	.	Atlas-SNP
GRIK2	2898	hgsc.bcm.edu	hg19	6	102503268	102503268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	GRIK2	NM_021956	exon15	c.A2375G	p.H792R	AACTGCATATGAT	.	151.0	62.0	95.0	0.0	.	487	.	.	Atlas-SNP
ADAT2	134637	hgsc.bcm.edu	hg19	6	143759816	143759816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	ADAT2,rectum,carcinoma,0,1	ADAT2	NM_182503	exon2	c.G112A	p.E38K	TATTTTCGAGGGC	.	94.0	36.0	58.0	0.0	.	18	.	.	Atlas-SNP
STXBP5	134957	hgsc.bcm.edu	hg19	6	147694876	147694876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	STXBP5_ENST00000321680,NS,carcinoma,0,2	STXBP5	NM_001127715	exon26	c.G3091A	p.G1031S	ATGTTGGGTGAAC	.	119.0	45.0	104.0	0.0	.	163	.	.	Atlas-SNP
DGKB	1607	hgsc.bcm.edu	hg19	7	14733789	14733789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	DGKB	NM_145695	exon8	c.T622C	p.Y208H	GATCATAGTCAAT	.	108.0	53.0	68.0	0.0	.	166	.	.	Atlas-SNP
WBSCR17	64409	hgsc.bcm.edu	hg19	7	71130456	71130456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	WBSCR17	NM_022479	exon7	c.C1141T	p.R381W	ATTGAGCGGAAGA	.	121.0	52.0	88.0	0.0	.	208	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82584355	82584355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	PCLO	NM_014510	exon5	c.A5914G	p.S1972G	GCAGACTGCCATC	.	109.0	51.0	82.0	0.0	.	1506	.	.	Atlas-SNP
MLL5	55904	hgsc.bcm.edu	hg19	7	104749510	104749510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	MLL5	NM_018682	exon22	c.A3590C	p.D1197A	ATGGTGATGGCTG	.	148.0	69.0	126.0	0.0	.	173	.	.	Atlas-SNP
MLL5	55904	hgsc.bcm.edu	hg19	7	104751284	104751284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	MLL5	NM_018682	exon25	c.A4037G	p.N1346S	CTCAAAATACTTG	.	202.0	90.0	169.0	0.0	.	173	.	.	Atlas-SNP
PODXL	5420	hgsc.bcm.edu	hg19	7	131241029	131241029	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	PODXL	NM_001018111	exon1	c.C90G	p.P30P	CTGGGAGGGCGAC	.	88.0	8.0	89.0	0.0	.	53	.	.	Atlas-SNP
PODXL	5420	hgsc.bcm.edu	hg19	7	131241055	131241055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	PODXL	NM_001018111	exon1	c.T64C	p.S22P	GCGACGACGGCAG	.	98.0	7.0	94.0	0.0	.	53	.	.	Atlas-SNP
PRKAG2	51422	hgsc.bcm.edu	hg19	7	151573596	151573596	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	PRKAG2	NM_016203	exon1	c.T110G	p.I37S	ACCGGAATGTGCA	.	61.0	20.0	51.0	0.0	.	86	.	.	Atlas-SNP
ADAM7	8756	hgsc.bcm.edu	hg19	8	24346811	24346811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	ADAM7	NM_003817	exon12	c.G1231T	p.D411Y	AAGTTGGATGAGG	.	109.0	55.0	106.0	0.0	.	165	.	.	Atlas-SNP
MBOAT4	619373	hgsc.bcm.edu	hg19	8	29996075	29996075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	MBOAT4	NM_001100916	exon2	c.A317G	p.Y106C	AGATAATACTCAG	.	309.0	127.0	218.0	0.0	.	31	.	.	Atlas-SNP
TTI2	80185	hgsc.bcm.edu	hg19	8	33360999	33360999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	.	NM_001265581	exon6	c.A1207G	p.R403G	TCAGTCTAGCTTC	.	112.0	44.0	85.0	0.0	.	.	.	.	Atlas-SNP
KIAA1429	25962	hgsc.bcm.edu	hg19	8	95531278	95531278	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	KIAA1429	NM_015496	exon9	c.T2448C	p.F816F	CAGACTAAAAACA	.	77.0	36.0	62.0	0.0	.	176	.	.	Atlas-SNP
GRIN3A	116443	hgsc.bcm.edu	hg19	9	104500017	104500017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	GRIN3A	NM_133445	exon1	c.A245G	p.E82G	CCTGGCTCCGGCT	.	27.0	12.0	10.0	0.0	.	186	.	.	Atlas-SNP
C5	727	hgsc.bcm.edu	hg19	9	123716025	123716025	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	C5	NM_001735	exon40	c.A4884G	p.K1628K	ATTGTATTTTATC	.	159.0	72.0	104.0	0.0	.	124	.	.	Atlas-SNP
ASS1	445	hgsc.bcm.edu	hg19	9	133355124	133355124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	ASS1	NM_054012	exon10	c.A710G	p.N237S	TGACCAACGTCAA	.	69.0	40.0	62.0	0.0	.	37	.	.	Atlas-SNP
ANAPC2	29882	hgsc.bcm.edu	hg19	9	140077677	140077677	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	ANAPC2	NM_013366	exon6	c.A1186T	p.I396F	TGATGATGTCACA	.	115.0	51.0	84.0	0.0	.	57	.	.	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	hg19	9	141014753	141014753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	CACNA1B	NM_001243812	exon44	c.G6167A	p.C2056Y	ACCGCTGCCACCG	.	37.0	21.0	58.0	0.0	.	266	.	.	Atlas-SNP
SLC39A12	221074	hgsc.bcm.edu	hg19	10	18242319	18242319	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	SLC39A12	NM_152725	exon2	c.G114C	p.G38G	CCGTGGGAGTTCA	.	205.0	101.0	143.0	0.0	.	181	.	.	Atlas-SNP
DCLRE1A	9937	hgsc.bcm.edu	hg19	10	115612648	115612648	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	DCLRE1A	NM_014881	exon1	c.A294G	p.P98P	TTTTCCTGGAGTA	.	72.0	67.0	124.0	0.0	.	80	.	.	Atlas-SNP
GPR123	84435	hgsc.bcm.edu	hg19	10	134942314	134942314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	GPR123	NM_001083909	exon7	c.C982T	p.H328Y	GACGCCCACCCCG	.	62.0	58.0	74.0	0.0	.	118	.	.	Atlas-SNP
INS	3630	hgsc.bcm.edu	hg19	11	2181222	2181222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	INS	NM_001185097	exon3	c.C193A	p.Q65K	CCACCTGCCCCAC	.	39.0	22.0	42.0	0.0	.	10	.	.	Atlas-SNP
KIF18A	81930	hgsc.bcm.edu	hg19	11	28090820	28090820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	KIF18A	NM_031217	exon11	c.G1576A	p.G526S	TATGACCGTTTTG	.	127.0	9.0	70.0	0.0	.	92	.	.	Atlas-SNP
OR5M9	390162	hgsc.bcm.edu	hg19	11	56230823	56230823	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	OR5M9	NM_001004743	exon1	c.C55T	p.Q19X	GCTCCTGACGACA	.	122.0	107.0	200.0	1.0	.	75	.	.	Atlas-SNP
ROBO4	54538	hgsc.bcm.edu	hg19	11	124756386	124756386	+	Missense_Mutation	SNP	G	G	A	rs377645881		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	ROBO4	NM_019055	exon16	c.C2768T	p.P923L	TCCCTGGGCTCTA	.	75.0	67.0	132.0	0.0	.	130	.	.	Atlas-SNP
GYS2	2998	hgsc.bcm.edu	hg19	12	21757510	21757510	+	Missense_Mutation	SNP	G	G	C	rs141614479		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	GYS2	NM_021957	exon1	c.C17G	p.S6C	GAGAGGGATCGGC	.	201.0	86.0	156.0	0.0	.	110	.	G|1.000;C|0.000	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	hg19	12	40689286	40689286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	LRRK2	NM_198578	exon23	c.C2936T	p.S979F	TGGCTTCTGAGAG	.	87.0	44.0	56.0	0.0	.	763	.	.	Atlas-SNP
TIMELESS	8914	hgsc.bcm.edu	hg19	12	56811967	56811967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	TIMELESS	NM_003920	exon27	c.G3405T	p.R1135S	GAGGGCCCTCAGG	.	87.0	42.0	62.0	0.0	.	107	.	.	Atlas-SNP
OTOGL	283310	hgsc.bcm.edu	hg19	12	80712338	80712338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	OTOGL	NM_173591	exon32	c.G3620T	p.G1207V	GAGAAGGACCATA	.	77.0	39.0	67.0	0.0	.	235	.	.	Atlas-SNP
MIPEP	4285	hgsc.bcm.edu	hg19	13	24411689	24411689	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	MIPEP	NM_005932	exon14	c.1543+2T>A	.	TGGCTCACCAGTG	.	140.0	69.0	98.0	0.0	.	53	.	.	Atlas-SNP
AMER2	219287	hgsc.bcm.edu	hg19	13	25744258	25744258	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	.	NM_152704	exon1	c.C1500A	p.P500P	AGGATGGGGCTCG	.	70.0	32.0	60.0	0.0	.	.	.	.	Atlas-SNP
PCDH20	64881	hgsc.bcm.edu	hg19	13	61985638	61985638	+	Missense_Mutation	SNP	A	A	G	rs375289034		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	PCDH20	NM_022843	exon2	c.T2594C	p.I865T	TCCTCTATATTAA	.	68.0	62.0	103.0	0.0	.	265	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77661633	77661633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	MYCBP2	NM_015057	exon62	c.G10861A	p.E3621K	AATTTTCTTTGCT	.	107.0	14.0	167.0	0.0	.	1029	.	.	Atlas-SNP
POTEM	641455	hgsc.bcm.edu	hg19	14	20019996	20019996	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	POTEM_ENST00000551509,NS,carcinoma,-2,3	POTEM	NM_001145442	exon1	c.C225T	p.S75S	CTTGCCGCTCCCC	.	964.0	62.0	519.0	1.0	.	51	.	.	Atlas-SNP
RALGAPA1	253959	hgsc.bcm.edu	hg19	14	36155747	36155747	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	RALGAPA1	NM_194301	exon19	c.2559+1G>T	.	AACTTACCGAGGC	.	167.0	153.0	335.0	0.0	.	289	.	.	Atlas-SNP
RALGAPA1	253959	hgsc.bcm.edu	hg19	14	36155768	36155768	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	RALGAPA1	NM_194301	exon18	c.C2539G	p.L847V	TTCGAAGTCGTTC	.	175.0	163.0	355.0	0.0	.	289	.	.	Atlas-SNP
IRF2BPL	64207	hgsc.bcm.edu	hg19	14	77493105	77493105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	IRF2BPL	NM_024496	exon1	c.T1031C	p.L344S	TCCTTCAACTCGC	.	115.0	42.0	83.0	0.0	.	40	.	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	hg19	14	94004493	94004493	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	UNC79	NM_020818	exon12	c.C750T	p.T250T	TCAGACCTCTCCT	.	153.0	75.0	115.0	0.0	.	366	.	.	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	hg19	14	96775858	96775858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	ATG2B	NM_018036	exon29	c.T4235C	p.L1412P	CTCATCAGATCTC	.	154.0	65.0	101.0	0.0	.	169	.	.	Atlas-SNP
HSP90AA1	3320	hgsc.bcm.edu	hg19	14	102548068	102548068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	HSP90AA1	NM_001017963	exon12	c.G2546A	p.R849H	TCCATGCGTGATG	.	85.0	38.0	66.0	0.0	.	65	.	.	Atlas-SNP
CHRNA7	1139	hgsc.bcm.edu	hg19	15	32455506	32455506	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	CHRNA7,NS,carcinoma,0,1	CHRNA7	NM_001190455	exon9	c.C1047T	p.H349H	CCACCACGACCCC	.	524.0	255.0	355.0	0.0	.	57	.	.	Atlas-SNP
SPATA5L1	79029	hgsc.bcm.edu	hg19	15	45707864	45707864	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	SPATA5L1	NM_024063	exon5	c.C1724G	p.A575G	GCTCAGCCAGCAA	.	112.0	53.0	63.0	0.0	.	40	.	.	Atlas-SNP
PYGO1	26108	hgsc.bcm.edu	hg19	15	55838901	55838901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	PYGO1	NM_015617	exon3	c.C580A	p.Q194K	AAACTTGGCTAGC	.	237.0	107.0	148.0	0.0	.	56	.	.	Atlas-SNP
DNAJA4	55466	hgsc.bcm.edu	hg19	15	78566662	78566662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	DNAJA4	NM_018602	exon5	c.G629T	p.C210F	TCGAGTGCAAGGG	.	139.0	42.0	144.0	0.0	.	63	.	.	Atlas-SNP
SOLH	6650	hgsc.bcm.edu	hg19	16	597393	597393	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	SOLH	NM_005632	exon4	c.G555A	p.P185P	GGTCCCGGAAGTG	.	71.0	34.0	64.0	0.0	.	47	.	.	Atlas-SNP
SOLH	6650	hgsc.bcm.edu	hg19	16	597394	597394	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	SOLH	NM_005632	exon4	c.G556T	p.E186X	GTCCCGGAAGTGG	.	71.0	34.0	65.0	0.0	.	47	.	.	Atlas-SNP
ACSM5	54988	hgsc.bcm.edu	hg19	16	20451162	20451162	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	ACSM5	NM_017888	exon13	c.C1577G	p.S526C	ACTCCTCTCATGA	.	169.0	47.0	140.0	0.0	.	101	.	.	Atlas-SNP
SLC12A4	6560	hgsc.bcm.edu	hg19	16	67995510	67995510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	SLC12A4	NM_001145962	exon2	c.A316G	p.S106G	CCCCACTCTCGGC	.	59.0	57.0	75.0	0.0	.	81	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578500	7578500	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	TP53_ENST00000545858,bladder,carcinoma,0,3	TP53	NM_000546	exon5	c.C430T	p.Q144X	ACAGCTGCACAGG	.	81.0	74.0	83.0	0.0	.	33396	.	.	Atlas-SNP
MYH1	4619	hgsc.bcm.edu	hg19	17	10408279	10408279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	MYH1	NM_005963	exon22	c.G2539T	p.A847S	TCTCTGCACTTTT	.	67.0	64.0	106.0	0.0	.	403	.	.	Atlas-SNP
NOS2	4843	hgsc.bcm.edu	hg19	17	26089884	26089884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	NOS2	NM_000625	exon22	c.C2740T	p.R914W	GATCCCGGGAGGA	.	90.0	7.0	67.0	0.0	.	113	.	.	Atlas-SNP
MRM1	79922	hgsc.bcm.edu	hg19	17	34958498	34958498	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	MRM1	NM_024864	exon1	c.G259T	p.E87X	CGGGCCGAGCTGC	.	66.0	38.0	52.0	0.0	.	19	.	.	Atlas-SNP
MSI2	124540	hgsc.bcm.edu	hg19	17	55752442	55752442	+	Silent	SNP	T	T	C	rs376818853		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	MSI2	NM_138962	exon12	c.T900C	p.S300S	CATAAGTGCGGCC	.	293.0	108.0	202.0	0.0	.	52	.	.	Atlas-SNP
SMG8	55181	hgsc.bcm.edu	hg19	17	57290544	57290544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	SMG8	NM_018149	exon3	c.G2360A	p.G787D	AACAGGGCTTTAT	.	142.0	74.0	94.0	0.0	.	79	.	.	Atlas-SNP
KIAA0195	9772	hgsc.bcm.edu	hg19	17	73487458	73487458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	KIAA0195	NM_014738	exon13	c.C1308A	p.S436R	CTTCAGCGGGAAG	.	131.0	55.0	91.0	0.0	.	102	.	.	Atlas-SNP
CTIF	9811	hgsc.bcm.edu	hg19	18	46287893	46287893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	CTIF	NM_001142397	exon10	c.A1210G	p.N404D	GCCCAGAACTCCA	.	65.0	59.0	98.0	0.0	.	102	.	.	Atlas-SNP
SERPINB2	5055	hgsc.bcm.edu	hg19	18	61562581	61562581	+	Silent	SNP	G	G	A	rs149564761	byfrequency;alternate_allele	TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	SERPINB2	NM_002575	exon3	c.G252A	p.Q84Q	GCAGCAGATCCAG	.	77.0	71.0	81.0	0.0	.	63	.	G|0.999;C|0.001	Atlas-SNP
ZNF91	7644	hgsc.bcm.edu	hg19	19	23543926	23543926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	ZNF91	NM_003430	exon4	c.A1855G	p.R619G	TATGTCTTCTTAG	.	128.0	59.0	104.0	0.0	.	349	.	.	Atlas-SNP
ZNF569	148266	hgsc.bcm.edu	hg19	19	37904229	37904229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	ZNF569	NM_152484	exon6	c.G1331A	p.G444E	GCTTTCCCACATT	.	84.0	80.0	105.0	1.0	.	101	.	.	Atlas-SNP
ZNF780A	284323	hgsc.bcm.edu	hg19	19	40580707	40580707	+	Nonsense_Mutation	SNP	G	G	A	rs368327296		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	ZNF780A_ENST00000455521,colon,carcinoma,0,6	ZNF780A	NM_001142577	exon6	c.C1645T	p.R549X	TACTTCGATGTTG	.	601.0	489.0	117.0	0.0	.	156	.	.	Atlas-SNP
SIRPB1	10326	hgsc.bcm.edu	hg19	20	1551722	1551722	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	SIRPB1	NM_006065	exon4	c.C813T	p.T271T	CTGGCAGGTGACG	.	263.0	83.0	120.0	0.0	.	83	.	.	Atlas-SNP
BPIFA3	128861	hgsc.bcm.edu	hg19	20	31814800	31814800	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	.	NM_001042439	exon5	c.577+1G>C	.	TCATAGGTGAGTG	.	137.0	36.0	68.0	0.0	.	.	.	.	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	hg19	20	47273593	47273593	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	PREX1	NM_020820	exon18	c.C2108G	p.A703G	TTCGTGGCCACCA	.	100.0	18.0	53.0	0.0	.	441	.	.	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	hg19	20	60907730	60907730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	LAMA5	NM_005560	exon27	c.A3326G	p.Y1109C	AGGGCATAGCGGC	.	149.0	49.0	82.0	0.0	.	268	.	.	Atlas-SNP
SIM2	6493	hgsc.bcm.edu	hg19	21	38098595	38098595	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	SIM2	NM_005069	exon6	c.T719C	p.L240P	TTGACCTGAAGCT	.	62.0	24.0	46.0	0.0	.	55	.	.	Atlas-SNP
PRDM15	63977	hgsc.bcm.edu	hg19	21	43299446	43299446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	PRDM15	NM_022115	exon1	c.C35T	p.A12V	AACTGCGCAGCAC	.	32.0	12.0	28.0	0.0	.	110	.	.	Atlas-SNP
ATF4	468	hgsc.bcm.edu	hg19	22	39917506	39917506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	ATF4	NM_001675	exon1	c.C56T	p.P19L	TGTCCCCCTTCGA	.	158.0	84.0	157.0	0.0	.	27	.	.	Atlas-SNP
SLC25A6	293	hgsc.bcm.edu	hg19	X	1506264	1506264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	SLC25A6	NM_001636	exon3	c.T647C	p.I216T	TGCGCGATCATCC	.	167.0	8.0	105.0	0.0	.	27	.	.	Atlas-SNP
SHROOM2	357	hgsc.bcm.edu	hg19	X	9864618	9864618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	SHROOM2	NM_001649	exon4	c.G2670T	p.R890S	GGCCAGGAGCTCT	.	136.0	125.0	119.0	1.0	.	139	.	.	Atlas-SNP
TLR8	51311	hgsc.bcm.edu	hg19	X	12938752	12938752	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	TLR8	NM_138636	exon2	c.T1593C	p.H531H	TCCTCATGTCAAA	.	203.0	19.0	121.0	0.0	.	134	.	.	Atlas-SNP
CDKL5	6792	hgsc.bcm.edu	hg19	X	18602433	18602433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	CDKL5	NM_003159	exon8	c.G514A	p.V172I	GAGTACGTTGCCA	.	103.0	99.0	89.0	0.0	.	124	.	.	Atlas-SNP
L1CAM	3897	hgsc.bcm.edu	hg19	X	153135853	153135853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	L1CAM	NM_000425	exon7	c.G796A	p.A266T	CCTCGGCGATGCA	.	125.0	17.0	94.0	0.0	.	189	.	.	Atlas-SNP
TRIM13	10206	hgsc.bcm.edu	hg19	13	50588480	50588481	+	RNA	INS	-	-	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	TRIM13	.	.	.	.	.	.	35.0	21.0	38.0	0.0	.	30	.	.	Atlas-INDEL
VWA8	23078	hgsc.bcm.edu	hg19	13	42390845	42390846	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	.	NM_015058	exon16	c.1936_1937insA	p.Q646fs	.	.	151.0	72.0	133.0	0.0	.	.	.	.	Atlas-INDEL
HMGCS1	3157	hgsc.bcm.edu	hg19	5	43298839	43298839	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	HMGCS1	NM_002130	exon2	c.230delT	p.M77fs	.	.	297.0	216.0	145.0	0.0	.	33	.	.	Atlas-INDEL
OR5H2	79310	hgsc.bcm.edu	hg19	3	98001914	98001945	+	Frame_Shift_Del	DEL	CATCCCCATGTACTTTTTTCTTGGGAGTTTAG	CATCCCCATGTACTTTTTTCTTGGGAGTTTAG	-	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	CATCCCCATGTACTTTTTTCTTGGGAGTTTAG	CATCCCCATGTACTTTTTTCTTGGGAGTTTAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	OR5H2	NM_001005482	exon1	c.182_213del	p.61_71del	.	.	136.0	26.0	113.0	0.0	.	63	.	.	Atlas-INDEL
TMEM39A	55254	hgsc.bcm.edu	hg19	3	119176876	119176878	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-DD-AACV-01A-11D-A40R-10	TCGA-DD-AACV-10A-01D-A40U-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fcfe5003-d7c8-44d1-a477-87739185c5aa	6c521fa5-4471-4a49-9649-e0317e230699	.	TMEM39A	NM_018266	exon3	c.324_326del	p.108_109del	.	.	144.0	59.0	105.0	0.0	.	36	.	.	Atlas-INDEL