Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm RPA2 6118 hgsc.bcm.edu hg19 1 28224153 28224153 + Missense_Mutation SNP T T A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . RPA2 NM_002946 exon5 c.A399T p.R133S AAAAGATCTCAGG . 140.0 54.0 168.0 0.0 . 34 . . Atlas-SNP PHC2 1912 hgsc.bcm.edu hg19 1 33832762 33832762 + Missense_Mutation SNP T T G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . PHC2 NM_198040 exon6 c.A931C p.S311R TCCGGCTGAGCCC . 92.0 31.0 99.0 0.0 . 78 . . Atlas-SNP NCDN 23154 hgsc.bcm.edu hg19 1 36026670 36026670 + Missense_Mutation SNP C C G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . NCDN NM_014284 exon3 c.C918G p.F306L CAAGTTCCTGGCC . 76.0 24.0 71.0 0.0 . 79 . . Atlas-SNP C8A 731 hgsc.bcm.edu hg19 1 57340763 57340763 + Missense_Mutation SNP A A G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . C8A NM_000562 exon3 c.A313G p.T105A AAGGAGACAGGTG . 73.0 36.0 68.0 0.0 . 103 . . Atlas-SNP ZZZ3 26009 hgsc.bcm.edu hg19 1 78098130 78098130 + Missense_Mutation SNP A A G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ZZZ3 NM_015534 exon5 c.T910C p.F304L CAGAAAAGGGCCC . 64.0 26.0 86.0 0.0 . 80 . . Atlas-SNP ABCA4 24 hgsc.bcm.edu hg19 1 94466454 94466454 + Silent SNP C C G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ABCA4 NM_000350 exon47 c.G6417C p.R2139R GGCCAGCCGGGTA . 101.0 35.0 89.0 0.0 . 275 . . Atlas-SNP TRIM46 80128 hgsc.bcm.edu hg19 1 155147913 155147913 + Missense_Mutation SNP A A C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . TRIM46 NM_025058 exon2 c.A115C p.M39L CAAGAGATGTACA . 214.0 61.0 116.0 0.0 . 79 . . Atlas-SNP CD1B 910 hgsc.bcm.edu hg19 1 158301196 158301196 + Missense_Mutation SNP A A T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CD1B NM_001764 exon1 c.T18A p.F6L CAGTTGAAATGGC . 280.0 80.0 195.0 0.0 . 78 . . Atlas-SNP APOBEC4 403314 hgsc.bcm.edu hg19 1 183617328 183617328 + Missense_Mutation SNP C C G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 APOBEC4,NS,carcinoma,0,1 APOBEC4 NM_203454 exon2 c.G589C p.V197L GGAGAACAGAATG . 149.0 49.0 94.0 0.0 . 45 . . Atlas-SNP LGR6 59352 hgsc.bcm.edu hg19 1 202163206 202163206 + Missense_Mutation SNP C C A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . LGR6 NM_001017403 exon1 c.C89A p.P30Q CCGGCCCGGGGCC . 28.0 18.0 12.0 0.0 . 102 . . Atlas-SNP NUP133 55746 hgsc.bcm.edu hg19 1 229633911 229633911 + Missense_Mutation SNP C C A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . NUP133 NM_018230 exon6 c.G791T p.G264V AAAATTCCAAAAA . 163.0 46.0 113.0 0.0 . 111 . . Atlas-SNP NUP133 55746 hgsc.bcm.edu hg19 1 229633912 229633912 + Nonsense_Mutation SNP C C A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 NUP133,colon,carcinoma,0,1 NUP133 NM_018230 exon6 c.G790T p.G264X AAATTCCAAAAAG . 164.0 47.0 113.0 0.0 . 111 . . Atlas-SNP CEP170 9859 hgsc.bcm.edu hg19 1 243328222 243328222 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CEP170 NM_014812 exon13 c.A3040T p.R1014X TTATTCTCCCACT . 484.0 255.0 361.0 0.0 . 153 . . Atlas-SNP OR2W5 441932 hgsc.bcm.edu hg19 1 247655265 247655265 + Missense_Mutation SNP A A G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . OR2W5 NM_001004698 exon1 c.A836G p.H279R TTCTACACCATCG . 241.0 70.0 168.0 0.0 . 97 . . Atlas-SNP EIF2AK2 5610 hgsc.bcm.edu hg19 2 37349710 37349710 + Missense_Mutation SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . EIF2AK2 NM_001135651 exon12 c.A1006G p.T336A CACTGGTCTCAGG . 111.0 49.0 74.0 0.0 . 54 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613036 73613036 + Missense_Mutation SNP G G C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ALMS1 NM_015120 exon1 c.G40C p.E14Q CTGGAGGAGGAGG . 205.0 13.0 159.0 0.0 . 384 . . Atlas-SNP RETSAT 54884 hgsc.bcm.edu hg19 2 85571364 85571364 + Missense_Mutation SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . RETSAT NM_017750 exon8 c.C1364T p.P455L CCACCTGGGAATC . 136.0 64.0 118.0 0.0 . 56 . . Atlas-SNP KCNJ3 3760 hgsc.bcm.edu hg19 2 155711241 155711241 + Missense_Mutation SNP A A G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . KCNJ3 NM_002239 exon3 c.A922G p.M308V GTAGGGATGACTT . 59.0 25.0 83.0 0.0 . 126 . . Atlas-SNP SP100 6672 hgsc.bcm.edu hg19 2 231368974 231368974 + Silent SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . SP100 NM_001080391 exon21 c.G1839A p.K613K GGTGAAGGGCACT . 113.0 35.0 123.0 0.0 . 167 . . Atlas-SNP CLASP2 23122 hgsc.bcm.edu hg19 3 33759454 33759454 + Missense_Mutation SNP T T A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CLASP2 NM_015097 exon1 c.A41T p.Q14L TTCTGCTGCACCT . 90.0 37.0 98.0 0.0 . 138 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266107 41266107 + Missense_Mutation SNP T T G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 CTNNB1,NS,carcinoma,0,1 CTNNB1 NM_001098209 exon3 c.T104G p.I35S CTGGAATCCATTC . 141.0 48.0 138.0 0.0 . 4904 . . Atlas-SNP MST1R 4486 hgsc.bcm.edu hg19 3 49936356 49936356 + Missense_Mutation SNP C C T rs148258933 TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . MST1R NM_001244937 exon3 c.G1492A p.V498M GCTGCACGGGCTG . 191.0 87.0 209.0 0.0 . 205 . C|1.000;T|0.000 Atlas-SNP DNAH1 25981 hgsc.bcm.edu hg19 3 52356615 52356615 + Missense_Mutation SNP C C A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . DNAH1 NM_015512 exon2 c.C157A p.P53T AATCCTCCAGCCC . 79.0 33.0 85.0 0.0 . 534 . . Atlas-SNP TKT 7086 hgsc.bcm.edu hg19 3 53267208 53267208 + Missense_Mutation SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . TKT NM_001258028 exon7 c.A736G p.I246V CAATGATGGCTGT . 91.0 37.0 70.0 0.0 . 38 . . Atlas-SNP MRPS22 56945 hgsc.bcm.edu hg19 3 139074588 139074588 + Missense_Mutation SNP C C A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . MRPS22 NM_020191 exon7 c.C943A p.Q315K TCGGCTCAAGGGG . 178.0 83.0 196.0 0.0 . 40 . . Atlas-SNP CCNL1 57018 hgsc.bcm.edu hg19 3 156867722 156867722 + Silent SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CCNL1 NM_020307 exon8 c.A924G p.V308V TAAGGCTACTTTT . 140.0 50.0 149.0 0.0 . 53 . . Atlas-SNP SERPINI1 5274 hgsc.bcm.edu hg19 3 167542319 167542319 + Silent SNP A A G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . SERPINI1 NM_005025 exon8 c.A1125G p.P375P CCATCCATTTTTC . 82.0 35.0 75.0 0.0 . 52 . . Atlas-SNP FETUB 26998 hgsc.bcm.edu hg19 3 186364073 186364073 + Missense_Mutation SNP A A T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . FETUB NM_014375 exon5 c.A631T p.I211F TACTTAATTAAAG . 134.0 59.0 115.0 0.0 . 53 . . Atlas-SNP PCDH7 5099 hgsc.bcm.edu hg19 4 30732375 30732375 + Missense_Mutation SNP A A T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . PCDH7 NM_002589 exon2 c.A3175T p.M1059L TTTCAGATGCGTC . 63.0 19.0 69.0 0.0 . 215 . . Atlas-SNP ARAP2 116984 hgsc.bcm.edu hg19 4 36230968 36230968 + Silent SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ARAP2 NM_015230 exon2 c.G141A p.Q47Q AATTTTCTGCAGC . 168.0 67.0 168.0 0.0 . 210 . . Atlas-SNP FRYL 285527 hgsc.bcm.edu hg19 4 48636346 48636346 + Missense_Mutation SNP C C A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . FRYL NM_015030 exon4 c.G82T p.A28S TTTCAGCTTGAAC . 229.0 91.0 240.0 0.0 . 242 . . Atlas-SNP FRYL 285527 hgsc.bcm.edu hg19 4 48636368 48636368 + Silent SNP G G T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . FRYL NM_015030 exon4 c.C60A p.L20L TGCAAAGAGGCTC . 229.0 97.0 237.0 0.0 . 242 . . Atlas-SNP AFM 173 hgsc.bcm.edu hg19 4 74364862 74364862 + Nonsense_Mutation SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . AFM NM_001133 exon11 c.C1321T p.Q441X GCTCCCCAACTCT . 75.0 23.0 97.0 0.0 . 101 . . Atlas-SNP SLC7A11 23657 hgsc.bcm.edu hg19 4 139153531 139153531 + Missense_Mutation SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . SLC7A11 NM_014331 exon3 c.C410T p.A137V GTAGCTGCAGGGC . 224.0 110.0 206.0 0.0 . 40 . . Atlas-SNP CCRN4L 25819 hgsc.bcm.edu hg19 4 139966514 139966514 + Silent SNP G G T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CCRN4L NM_012118 exon3 c.G1182T p.L394L CGATCTGCTCACT . 92.0 4.0 112.0 0.0 . 22 . . Atlas-SNP ADAMTS12 81792 hgsc.bcm.edu hg19 5 33616019 33616019 + Missense_Mutation SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ADAMTS12 NM_030955 exon15 c.G2302A p.A768T TCCCTGCCAGCTT . 99.0 36.0 75.0 0.0 . 464 . . Atlas-SNP SPEF2 79925 hgsc.bcm.edu hg19 5 35807283 35807283 + Silent SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . SPEF2 NM_024867 exon36 c.T5307C p.I1769I GCCAATTGAAGTC . 85.0 34.0 91.0 0.0 . 324 . . Atlas-SNP CARD6 84674 hgsc.bcm.edu hg19 5 40843445 40843445 + Missense_Mutation SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CARD6 NM_032587 exon2 c.G475A p.A159T GAAACAGCTTTGT . 168.0 59.0 157.0 0.0 . 141 . . Atlas-SNP SLCO6A1 133482 hgsc.bcm.edu hg19 5 101748694 101748694 + Missense_Mutation SNP C C G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . SLCO6A1 NM_173488 exon9 c.G1626C p.K542N AATTACCTTTTTT . 290.0 129.0 301.0 1.0 . 153 . . Atlas-SNP FBN2 2201 hgsc.bcm.edu hg19 5 127744443 127744443 + Silent SNP A A G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . FBN2 NM_001999 exon8 c.T1002C p.C334C GTTGGAACATTCA . 258.0 109.0 266.0 0.0 . 858 . . Atlas-SNP PDLIM4 8572 hgsc.bcm.edu hg19 5 131607555 131607555 + Missense_Mutation SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . PDLIM4 NM_003687 exon6 c.G742A p.G248S CTGAGCGGCCTGC . 74.0 37.0 65.0 0.0 . 22 . . Atlas-SNP PROB1 389333 hgsc.bcm.edu hg19 5 138728471 138728471 + Missense_Mutation SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . . NM_001161546 exon1 c.G2300A p.R767H ACCAGGCGCTGGG . 87.0 38.0 72.0 0.0 . . . . Atlas-SNP PCDHB16 57717 hgsc.bcm.edu hg19 5 140562423 140562423 + Missense_Mutation SNP G G C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . PCDHB16 NM_020957 exon1 c.G289C p.G97R CTATGCGGTCCCA . 127.0 62.0 132.0 0.0 . 159 . . Atlas-SNP TCOF1 6949 hgsc.bcm.edu hg19 5 149753925 149753925 + Silent SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . TCOF1 NM_001135243 exon8 c.G1059A p.T353T GGAGACGCCAGCT . 238.0 96.0 216.0 0.0 . 154 . . Atlas-SNP GALNT10 55568 hgsc.bcm.edu hg19 5 153795396 153795396 + Silent SNP C C T rs145718506 bycluster;by1000genomes;alternate_allele TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . GALNT10 NM_198321 exon11 c.C1557T p.T519T GCACACCAAGAAG . 292.0 112.0 267.0 1.0 . 70 . C|0.999;G|0.001 Atlas-SNP ATP10B 23120 hgsc.bcm.edu hg19 5 160059155 160059155 + Missense_Mutation SNP A A G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ATP10B NM_025153 exon13 c.T1601C p.V534A AAGGCCACAGGAG . 60.0 28.0 55.0 0.0 . 201 . . Atlas-SNP FLT4 2324 hgsc.bcm.edu hg19 5 180043367 180043367 + Missense_Mutation SNP A A T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . FLT4 NM_182925 exon23 c.T3219A p.S1073R ACTCACACTGCCC . 57.0 19.0 78.0 0.0 . 356 . . Atlas-SNP CD83 9308 hgsc.bcm.edu hg19 6 14118190 14118190 + Missense_Mutation SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CD83 NM_004233 exon2 c.T47C p.L16P ACAGCCTGGCTCC . 54.0 27.0 41.0 0.0 . 23 . . Atlas-SNP SLC35B2 347734 hgsc.bcm.edu hg19 6 44224447 44224447 + Missense_Mutation SNP G G T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . SLC35B2 NM_178148 exon2 c.C180A p.F60L CCGCCTGAAGTAC . 214.0 91.0 188.0 0.0 . 40 . . Atlas-SNP CEP57L1 285753 hgsc.bcm.edu hg19 6 109481821 109481821 + Missense_Mutation SNP T T G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CEP57L1 NM_001271853 exon10 c.T1063G p.S355A AGTCATTCAGTCT . 362.0 173.0 398.0 0.0 . 24 . . Atlas-SNP SLC22A16 85413 hgsc.bcm.edu hg19 6 110763848 110763848 + Missense_Mutation SNP C C A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . SLC22A16 NM_033125 exon4 c.G782T p.G261V AAGTATCCTGTCA . 112.0 46.0 106.0 0.0 . 81 . . Atlas-SNP NCOA7 135112 hgsc.bcm.edu hg19 6 126199417 126199417 + Missense_Mutation SNP C C G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . NCOA7 NM_001199619 exon6 c.C360G p.N120K TGGAAACCAGGAC . 104.0 46.0 115.0 0.0 . 92 . . Atlas-SNP IL20RA 53832 hgsc.bcm.edu hg19 6 137330583 137330583 + Silent SNP G G T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . IL20RA NM_014432 exon4 c.C450A p.S150S AGAAATGGACTTC . 96.0 33.0 89.0 0.0 . 54 . . Atlas-SNP FNDC1 84624 hgsc.bcm.edu hg19 6 159672391 159672391 + Missense_Mutation SNP C C A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . FNDC1 NM_032532 exon17 c.C4892A p.A1631E CTGATGCACTGGA . 107.0 36.0 74.0 0.0 . 250 . . Atlas-SNP IKZF1 10320 hgsc.bcm.edu hg19 7 50450271 50450271 + Missense_Mutation SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . IKZF1 NM_006060 exon5 c.C455T p.A152V GCGGGGCCTCATT . 64.0 24.0 53.0 0.0 . 613 . . Atlas-SNP RUNDC3B 154661 hgsc.bcm.edu hg19 7 87369128 87369128 + Silent SNP A A C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . RUNDC3B NM_138290 exon6 c.A531C p.A177A TGGAGCAATTGTC . 57.0 20.0 66.0 0.0 . 63 . . Atlas-SNP PTPRZ1 5803 hgsc.bcm.edu hg19 7 121652900 121652900 + Missense_Mutation SNP A A T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . PTPRZ1 NM_002851 exon12 c.A3800T p.E1267V CAAGTGAGAAATA . 91.0 36.0 94.0 0.0 . 605 . . Atlas-SNP ZMAT4 79698 hgsc.bcm.edu hg19 8 40532253 40532253 + Missense_Mutation SNP C C A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ZMAT4 NM_024645 exon5 c.G547T p.G183W TTGTCCCCAGTTG . 100.0 42.0 105.0 0.0 . 47 . . Atlas-SNP KIAA1429 25962 hgsc.bcm.edu hg19 8 95508121 95508121 + Splice_Site SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . KIAA1429 NM_015496 exon20 c.4384-2A>G . TGTTCCTAGATAC . 61.0 23.0 59.0 0.0 . 176 . . Atlas-SNP COL14A1 7373 hgsc.bcm.edu hg19 8 121282378 121282378 + Missense_Mutation SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . COL14A1 NM_021110 exon26 c.G3178A p.G1060R ACTGTTGGAGCCC . 83.0 35.0 85.0 0.0 . 292 . . Atlas-SNP KLHL38 340359 hgsc.bcm.edu hg19 8 124664197 124664197 + Missense_Mutation SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . KLHL38 NM_001081675 exon1 c.A970G p.K324E AGGCCTTGTACAG . 109.0 50.0 80.0 0.0 . 81 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79318782 79318782 + Missense_Mutation SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . PRUNE2 NM_015225 exon9 c.G7747A p.E2583K CTGTTTCTTTGGA . 84.0 36.0 101.0 0.0 . 331 . . Atlas-SNP GNAQ 2776 hgsc.bcm.edu hg19 9 80537145 80537145 + Missense_Mutation SNP T T G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . GNAQ NM_002072 exon2 c.A253C p.T85P TGGCCGTGAAGAT . 57.0 20.0 67.0 0.0 . 384 . . Atlas-SNP FBP2 8789 hgsc.bcm.edu hg19 9 97325637 97325637 + Missense_Mutation SNP C C A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . FBP2 NM_003837 exon6 c.G812T p.S271I TTAGGGCTCTTCT . 64.0 27.0 91.0 0.0 . 26 . . Atlas-SNP OR13C3 138803 hgsc.bcm.edu hg19 9 107298521 107298521 + Missense_Mutation SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . OR13C3 NM_001001961 exon1 c.C574T p.L192F TGGCAAGTAATGT . 169.0 81.0 124.0 0.0 . 45 . . Atlas-SNP OR1L3 26735 hgsc.bcm.edu hg19 9 125437750 125437750 + Silent SNP C C A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . OR1L3 NM_001005234 exon1 c.C342A p.L114L TTATCTCCTGGCG . 76.0 25.0 62.0 0.0 . 51 . . Atlas-SNP NR5A1 2516 hgsc.bcm.edu hg19 9 127253385 127253385 + Silent SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . NR5A1 NM_004959 exon6 c.C1113T p.L371L GAACTTGAGGCAG . 131.0 53.0 131.0 0.0 . 32 . . Atlas-SNP RALGDS 5900 hgsc.bcm.edu hg19 9 135983386 135983386 + Silent SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . RALGDS NM_006266 exon6 c.C1186T p.L396L CCATCAGTGTAAA . 67.0 26.0 74.0 0.0 . 75 . . Atlas-SNP TAF3 83860 hgsc.bcm.edu hg19 10 8051233 8051233 + Silent SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . TAF3 NM_031923 exon5 c.C2508T p.S836S CGCCTCCGGGGCC . 51.0 29.0 49.0 0.0 . 93 . . Atlas-SNP KIAA1217 56243 hgsc.bcm.edu hg19 10 24832401 24832401 + Missense_Mutation SNP A A G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . KIAA1217 NM_019590 exon19 c.A4202G p.H1401R AGGTGCATGATAT . 113.0 55.0 138.0 0.0 . 235 . . Atlas-SNP SVIL 6840 hgsc.bcm.edu hg19 10 29818721 29818721 + Missense_Mutation SNP T T G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . SVIL NM_021738 exon12 c.A2159C p.N720T GCTGTGTTTCTTG . 64.0 28.0 68.0 0.0 . 226 . . Atlas-SNP GJD4 219770 hgsc.bcm.edu hg19 10 35897329 35897329 + Missense_Mutation SNP T T A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . GJD4 NM_153368 exon2 c.T888A p.S296R TGAGAGTGAGGTG . 65.0 26.0 68.0 0.0 . 38 . . Atlas-SNP PCDH15 65217 hgsc.bcm.edu hg19 10 55780163 55780163 + Missense_Mutation SNP T T A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 PCDH15_ENST00000417177,colon,carcinoma,-1,4 PCDH15 NM_001142763 exon21 c.A2555T p.D852V CCAAGGTCGACAT . 74.0 22.0 65.0 0.0 . 1715 . . Atlas-SNP LRRTM3 347731 hgsc.bcm.edu hg19 10 68686716 68686716 + Silent SNP A A G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . LRRTM3 NM_178011 exon2 c.A42G p.V14V AGCTGTAGCACTG . 85.0 36.0 98.0 0.0 . 241 . . Atlas-SNP TYSND1 219743 hgsc.bcm.edu hg19 10 71905831 71905831 + Missense_Mutation SNP G G C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 TYSND1,NS,carcinoma,0,1 TYSND1 NM_173555 exon1 c.C512G p.S171W TCCTCCGACACTT . 132.0 55.0 101.0 1.0 . 20 . . Atlas-SNP AKIP1 56672 hgsc.bcm.edu hg19 11 8940933 8940933 + Missense_Mutation SNP A A C rs148121612 alternate_allele TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . AKIP1 NM_020642 exon6 c.A539C p.Y180S GGACCTATTCTGT . 100.0 41.0 81.0 0.0 . 9 . A|1.000;G|0.000 Atlas-SNP KIAA1549L 25758 hgsc.bcm.edu hg19 11 33628297 33628297 + Missense_Mutation SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . . NM_012194 exon13 c.C4099T p.P1367S ATAAAACCCACAG . 111.0 43.0 135.0 0.0 . . . . Atlas-SNP FNBP4 23360 hgsc.bcm.edu hg19 11 47765677 47765677 + Silent SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . FNBP4 NM_015308 exon8 c.G1284A p.V428V CCCTGACACACTA . 89.0 50.0 81.0 0.0 . 99 . . Atlas-SNP OR5D14 219436 hgsc.bcm.edu hg19 11 55563337 55563337 + Missense_Mutation SNP G G T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . OR5D14 NM_001004735 exon1 c.G306T p.Q102H GATGCAGTACTTC . 81.0 32.0 82.0 0.0 . 116 . . Atlas-SNP SLC29A2 3177 hgsc.bcm.edu hg19 11 66136932 66136932 + Silent SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 SLC29A2,NS,carcinoma,0,1 SLC29A2 NM_001532 exon3 c.C183T p.P61P ATCCTCGGGACCC . 124.0 63.0 107.0 0.0 . 24 . . Atlas-SNP APOA1 335 hgsc.bcm.edu hg19 11 116707867 116707867 + Missense_Mutation SNP T T A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . APOA1 NM_000039 exon3 c.A50T p.Q17L CGAGCCTGGCTCC . 42.0 19.0 42.0 0.0 . 19 . . Atlas-SNP ROBO3 64221 hgsc.bcm.edu hg19 11 124740076 124740076 + Missense_Mutation SNP T T A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ROBO3 NM_022370 exon5 c.T782A p.L261Q CATTCCTGCGCAG . 117.0 54.0 107.0 0.0 . 199 . . Atlas-SNP SLC37A2 219855 hgsc.bcm.edu hg19 11 124949588 124949588 + Silent SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . SLC37A2 NM_001145290 exon6 c.T459C p.N153N CTGTAATGGACTC . 112.0 43.0 111.0 0.0 . 105 . . Atlas-SNP CCND2 894 hgsc.bcm.edu hg19 12 4387935 4387935 + Missense_Mutation SNP C C G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CCND2 NM_001759 exon3 c.C421G p.L141V TGGGAACTGGTGG . 62.0 23.0 63.0 0.0 . 50 . . Atlas-SNP KCNH3 23416 hgsc.bcm.edu hg19 12 49943969 49943969 + Missense_Mutation SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . KCNH3 NM_012284 exon10 c.G1775A p.R592Q GCCTGCGGGCACT . 79.0 42.0 80.0 0.0 . 88 . . Atlas-SNP STAB2 55576 hgsc.bcm.edu hg19 12 104100584 104100584 + Silent SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . STAB2 NM_017564 exon38 c.T4011C p.C1337C ATGCTGTGCCGGC . 97.0 34.0 107.0 0.0 . 370 . . Atlas-SNP GOLGA3 2802 hgsc.bcm.edu hg19 12 133353241 133353241 + Silent SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 GOLGA3,right_upper_lobe,carcinoma,0,2 GOLGA3 NM_005895 exon21 c.A3957G p.E1319E TAGCCCTTCCAGT . 34.0 3.0 24.0 0.0 . 234 . . Atlas-SNP ZDHHC20 253832 hgsc.bcm.edu hg19 13 22033279 22033279 + Missense_Mutation SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ZDHHC20 NM_153251 exon1 c.A32G p.Q11R ACGCGCTGGCAGC . 185.0 61.0 133.0 0.0 . 36 . . Atlas-SNP NAA16 79612 hgsc.bcm.edu hg19 13 41910840 41910840 + Missense_Mutation SNP G G T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . NAA16 NM_001110798 exon9 c.G962T p.G321V GTAAAGGCTGCCC . 106.0 39.0 135.0 0.0 . 74 . . Atlas-SNP MYCBP2 23077 hgsc.bcm.edu hg19 13 77751932 77751932 + Missense_Mutation SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . MYCBP2 NM_015057 exon35 c.A5291G p.Y1764C CCTCCATAGACAG . 113.0 40.0 108.0 0.0 . 1029 . . Atlas-SNP FRMD6 122786 hgsc.bcm.edu hg19 14 52188702 52188702 + Nonsense_Mutation SNP G G T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . FRMD6 NM_001267046 exon12 c.G1396T p.E466X GATCTGGAGCAGA . 93.0 40.0 81.0 0.0 . 100 . . Atlas-SNP EDC3 80153 hgsc.bcm.edu hg19 15 74967425 74967425 + Missense_Mutation SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . EDC3 NM_001142444 exon3 c.G41A p.C14Y TCTCCACAATTGA . 70.0 28.0 50.0 0.0 . 32 . . Atlas-SNP GRIN2A 2903 hgsc.bcm.edu hg19 16 9943750 9943750 + Silent SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . GRIN2A NM_000833 exon6 c.C1191T p.S397S ACAGTCGGAGAAG . 90.0 38.0 88.0 0.0 . 366 . . Atlas-SNP CPPED1 55313 hgsc.bcm.edu hg19 16 12897629 12897629 + Nonsense_Mutation SNP G G T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CPPED1 NM_001099455 exon1 c.C5A p.S2X GCAGCCGACATGG . 94.0 30.0 96.0 0.0 . 41 . . Atlas-SNP DNAH3 55567 hgsc.bcm.edu hg19 16 21053420 21053420 + Missense_Mutation SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . DNAH3 NM_017539 exon32 c.C4567T p.P1523S AGGTTGGGTTCAG . 98.0 49.0 84.0 0.0 . 1142 . . Atlas-SNP SEZ6L2 26470 hgsc.bcm.edu hg19 16 29908302 29908302 + Missense_Mutation SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . SEZ6L2 NM_001243332 exon3 c.A352G p.T118A GCGCAGTGGGGCC . 44.0 17.0 39.0 0.0 . 137 . . Atlas-SNP PRSS8 5652 hgsc.bcm.edu hg19 16 31144008 31144008 + Missense_Mutation SNP G G C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . PRSS8 NM_002773 exon4 c.C533G p.P178R CCTGAGGGGGCCA . 77.0 33.0 53.0 0.0 . 24 . . Atlas-SNP RBL2 5934 hgsc.bcm.edu hg19 16 53498217 53498217 + Missense_Mutation SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 RBL2,rectum,NS,0,1 RBL2 NM_005611 exon12 c.C1640T p.P547L AGCCTCCTGGGAA . 100.0 46.0 126.0 0.0 . 115 . . Atlas-SNP EDC4 23644 hgsc.bcm.edu hg19 16 67907167 67907167 + Missense_Mutation SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . EDC4 NM_014329 exon1 c.G3A p.M1I GCCCATGGCCTCC . 87.0 33.0 80.0 0.0 . 101 . . Atlas-SNP ZNF469 84627 hgsc.bcm.edu hg19 16 88496738 88496738 + Missense_Mutation SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ZNF469 NM_001127464 exon1 c.T2860C p.F954L AAGCTGTTCCGGA . 624.0 256.0 622.0 0.0 . 121 . . Atlas-SNP MYO15A 51168 hgsc.bcm.edu hg19 17 18023832 18023832 + Missense_Mutation SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . MYO15A NM_016239 exon2 c.C1718T p.A573V CGCTTGCGCGGTT . 250.0 179.0 330.0 0.0 . 268 . . Atlas-SNP SLC47A1 55244 hgsc.bcm.edu hg19 17 19454772 19454772 + Missense_Mutation SNP G G T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . SLC47A1 NM_018242 exon6 c.G534T p.L178F ATATTTGCTCAAC . 35.0 27.0 73.0 0.0 . 55 . . Atlas-SNP TAOK1 57551 hgsc.bcm.edu hg19 17 27835056 27835056 + Missense_Mutation SNP T T G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . TAOK1 NM_025142 exon14 c.T1481G p.L494R ATCGCCTCAGATT . 277.0 55.0 194.0 0.0 . 151 . . Atlas-SNP KRT28 162605 hgsc.bcm.edu hg19 17 38955938 38955938 + Missense_Mutation SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . KRT28 NM_181535 exon1 c.G208A p.A70T TACAAGCAGCATT . 164.0 52.0 98.0 0.0 . 65 . . Atlas-SNP TMEM101 84336 hgsc.bcm.edu hg19 17 42089361 42089361 + Missense_Mutation SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . TMEM101 NM_032376 exon4 c.A709G p.M237V GCTTCATCTGGTT . 106.0 26.0 56.0 0.0 . 18 . . Atlas-SNP STRADA 92335 hgsc.bcm.edu hg19 17 61781755 61781755 + Missense_Mutation SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . STRADA NM_001003787 exon11 c.C1046T p.S349F TGGGGGGAGAAGG . 49.0 29.0 50.0 0.0 . 27 . . Atlas-SNP CDK3 1018 hgsc.bcm.edu hg19 17 73999349 73999349 + Missense_Mutation SNP C C G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CDK3 NM_001258 exon7 c.C662G p.T221R TGGGGACACCCAG . 119.0 30.0 112.0 0.0 . 31 . . Atlas-SNP OR7A5 26659 hgsc.bcm.edu hg19 19 14938490 14938490 + Silent SNP A A C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . OR7A5 NM_017506 exon1 c.T564G p.A188A AGAACAAGCAAGT . 239.0 95.0 212.0 0.0 . 43 . . Atlas-SNP OR7A5 26659 hgsc.bcm.edu hg19 19 14938512 14938512 + Missense_Mutation SNP A A C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . OR7A5 NM_017506 exon1 c.T542G p.L181R TGATTAAGTTCAC . 237.0 95.0 230.0 0.0 . 43 . . Atlas-SNP ZNF99 7652 hgsc.bcm.edu hg19 19 22942100 22942100 + Missense_Mutation SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ZNF99 NM_001080409 exon4 c.A611G p.E204G CGTTCTTCACATT . 38.0 23.0 30.0 0.0 . 273 . . Atlas-SNP PVR 5817 hgsc.bcm.edu hg19 19 45153129 45153129 + Missense_Mutation SNP A A G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . PVR NM_001135769 exon3 c.A476G p.E159G CTGGAGAGCCAGT . 59.0 29.0 79.0 0.0 . 23 . . Atlas-SNP PVR 5817 hgsc.bcm.edu hg19 19 45153140 45153140 + Missense_Mutation SNP A A C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . PVR NM_001135769 exon3 c.A487C p.M163L GTGCCCATGGCCC . 62.0 28.0 76.0 0.0 . 23 . . Atlas-SNP SIGLEC6 946 hgsc.bcm.edu hg19 19 52031035 52031035 + Missense_Mutation SNP T T G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . SIGLEC6 NM_001245 exon7 c.A1154C p.D385A ACATCATCCGTGT . 77.0 34.0 90.0 0.0 . 142 . . Atlas-SNP FPR2 2358 hgsc.bcm.edu hg19 19 52272248 52272248 + Missense_Mutation SNP G G A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . FPR2 NM_001005738 exon2 c.G337A p.V113I GGAAGTGTCTTCT . 92.0 38.0 91.0 0.0 . 66 . . Atlas-SNP ZNF665 79788 hgsc.bcm.edu hg19 19 53667735 53667735 + Missense_Mutation SNP C C G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ZNF665 NM_024733 exon4 c.G2008C p.A670P GTTTTGCAAGGTT . 44.0 13.0 42.0 0.0 . 136 . . Atlas-SNP SSC5D 284297 hgsc.bcm.edu hg19 19 56000833 56000833 + Silent SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . SSC5D NM_001195267 exon3 c.C165T p.A55A TGCCGCCGTGGCC . 46.0 15.0 34.0 0.0 . 65 . . Atlas-SNP ZNF132 7691 hgsc.bcm.edu hg19 19 58945805 58945805 + Missense_Mutation SNP G G C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ZNF132 NM_003433 exon3 c.C1006G p.H336D GATGATGAACAAA . 94.0 4.0 91.0 0.0 . 56 . . Atlas-SNP TMC2 117532 hgsc.bcm.edu hg19 20 2591139 2591139 + Silent SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . TMC2 NM_080751 exon12 c.C1488T p.Y496Y GAATTACCACCCA . 83.0 65.0 110.0 0.0 . 121 . . Atlas-SNP CRLS1 54675 hgsc.bcm.edu hg19 20 6012689 6012689 + Missense_Mutation SNP A A G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CRLS1 NM_019095 exon5 c.A692G p.Y231C CTTGCTATGCCAC . 220.0 174.0 496.0 0.0 . 14 . . Atlas-SNP LRRN4 164312 hgsc.bcm.edu hg19 20 6022515 6022515 + Missense_Mutation SNP C C A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . LRRN4 NM_152611 exon5 c.G1376T p.G459V TGTTCTCCTCGGT . 60.0 45.0 74.0 0.0 . 54 . . Atlas-SNP SDC4 6385 hgsc.bcm.edu hg19 20 43956037 43956037 + Missense_Mutation SNP A A G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . SDC4 NM_002999 exon5 c.T464C p.I155T CCCACGATGCCAC . 54.0 16.0 58.0 0.0 . 16 . . Atlas-SNP PMEPA1 56937 hgsc.bcm.edu hg19 20 56227494 56227494 + Missense_Mutation SNP G G T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 PMEPA1,NS,carcinoma,0,1 PMEPA1 NM_020182 exon4 c.C479A p.P160H TGGTAGGGTGGGG . 89.0 31.0 61.0 0.0 . 29 . . Atlas-SNP OPRL1 4987 hgsc.bcm.edu hg19 20 62729870 62729870 + Silent SNP G G A rs144338110 alternate_allele TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . OPRL1 NM_000913 exon4 c.G831A p.T277T CTGGACGCCTGTC . 101.0 55.0 85.0 0.0 . 47 . G|1.000;T|0.000 Atlas-SNP POTEH 23784 hgsc.bcm.edu hg19 22 16267071 16267071 + Missense_Mutation SNP C C T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 POTEH,NS,carcinoma,0,1 POTEH NM_001136213 exon9 c.G1378A p.G460R TACTTCCGTGCTT . 971.0 133.0 918.0 0.0 . 114 . . Atlas-SNP CABIN1 23523 hgsc.bcm.edu hg19 22 24494016 24494016 + Silent SNP A A G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CABIN1 NM_001199281 exon26 c.A3978G p.S1326S CTCTTCAGCTGGG . 153.0 61.0 134.0 0.0 . 153 . . Atlas-SNP PLA2G6 8398 hgsc.bcm.edu hg19 22 38524361 38524361 + Silent SNP G G A rs375896475 TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . PLA2G6 NM_003560 exon9 c.C1263T p.V421V CGCGGGGACCCCG . 94.0 44.0 79.0 0.0 . 54 . . Atlas-SNP ADSL 158 hgsc.bcm.edu hg19 22 40742624 40742624 + Missense_Mutation SNP A A G novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ADSL NM_001123378 exon1 c.A62G p.Y21C CCCGCTATGCCAG . 41.0 17.0 46.0 0.0 . 98 . . Atlas-SNP EP300 2033 hgsc.bcm.edu hg19 22 41574913 41574913 + Missense_Mutation SNP T T A novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . EP300 NM_001429 exon31 c.T7198A p.S2400T GATAACTCAGACT . 84.0 29.0 65.0 0.0 . 367 . . Atlas-SNP ZC3H7B 23264 hgsc.bcm.edu hg19 22 41723227 41723227 + Silent SNP G G T novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ZC3H7B NM_017590 exon5 c.G303T p.A101A GAAGGCGCTGGAG . 52.0 19.0 63.0 0.0 . 82 . . Atlas-SNP TBC1D25 4943 hgsc.bcm.edu hg19 X 48418426 48418426 + Missense_Mutation SNP T T C novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . TBC1D25 NM_002536 exon6 c.T1130C p.F377S CCAAGTTTGCACA . 50.0 41.0 47.0 0.0 . 70 . . Atlas-SNP ZNF337 26152 hgsc.bcm.edu hg19 20 25655715 25655718 + Frame_Shift_Del DEL GTAA GTAA - novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 GTAA GTAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . ZNF337 NM_015655 exon5 c.2207_2210del p.736_737del . . 83.0 38.0 81.0 0.0 . 65 . . Atlas-INDEL KIF4B 285643 hgsc.bcm.edu hg19 5 154396709 154396714 + In_Frame_Del DEL AGCAGT AGCAGT - novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 AGCAGT AGCAGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . KIF4B NM_001099293 exon1 c.3289_3294del p.1097_1098del . . 228.0 88.0 233.0 0.0 . 307 . . Atlas-INDEL DAAM1 23002 hgsc.bcm.edu hg19 14 59834319 59834320 + Splice_Site INS - - GA novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . DAAM1 NM_001270520 exon24 c.2997+2->GA . . . 36.0 23.0 75.0 0.0 . 95 . . Atlas-INDEL CFP 5199 hgsc.bcm.edu hg19 X 47485892 47485892 + Frame_Shift_Del DEL C C - novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CFP NM_001145252 exon7 c.968delA p.E323fs . . 57.0 47.0 67.0 0.0 . 43 . . Atlas-INDEL PUM2 23369 hgsc.bcm.edu hg19 2 20507799 20507800 + Frame_Shift_Ins INS - - TT novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . PUM2 NM_015317 exon6 c.823_824insAA p.Q275fs . . 55.0 23.0 57.0 0.0 . 91 . . Atlas-INDEL FLCN 201163 hgsc.bcm.edu hg19 17 17127383 17127385 + In_Frame_Del DEL GAA GAA - novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 GAA GAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . FLCN NM_144997 exon6 c.470_472del p.157_158del . . 71.0 44.0 108.0 0.0 . 87 . . Atlas-INDEL LAMA1 284217 hgsc.bcm.edu hg19 18 6965285 6965307 + Frame_Shift_Del DEL TACCTTGCTTCCGGTTTCGCTGG TACCTTGCTTCCGGTTTCGCTGG - novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 TACCTTGCTTCCGGTTTCGCTGG TACCTTGCTTCCGGTTTCGCTGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . LAMA1 NM_005559 exon50 c.7177_7195del p.2393_2399del . . 74.0 18.0 93.0 0.0 . 458 . . Atlas-INDEL DLX6 1750 hgsc.bcm.edu hg19 7 96635364 96635369 + In_Frame_Del DEL GCAGCA GCAGCA - rs5885995 alternate_allele TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 GCAGCA GCAGCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . DLX6 NM_005222 exon1 c.74_79del p.25_27del . . 26.0 12.0 34.0 0.0 . 37 . . Atlas-INDEL BRD2 6046 hgsc.bcm.edu hg19 6 32947653 32947653 + Frame_Shift_Del DEL T T - novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . BRD2 NM_001199455 exon11 c.1994delG p.G665fs . . 108.0 50.0 122.0 0.0 . 70 . . Atlas-INDEL CCDC138 165055 hgsc.bcm.edu hg19 2 109411169 109411170 + Frame_Shift_Ins INS - - AATTG novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CCDC138 NM_144978 exon5 c.568_569insAATTG p.K190fs . . 71.0 26.0 81.0 0.0 . 49 . . Atlas-INDEL CEACAM1 634 hgsc.bcm.edu hg19 19 43023248 43023249 + In_Frame_Ins INS - - AGACTC novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . CEACAM1 NM_001205344 exon5 c.1098_1099insGAGTCT p.L366delinsLSL . . 146.0 49.0 185.0 0.0 . 43 . . Atlas-INDEL DNAH6 1768 hgsc.bcm.edu hg19 2 84960668 84960668 + Frame_Shift_Del DEL A A - novel TCGA-DD-AACX-01A-11D-A40R-10 TCGA-DD-AACX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8a122c38-1433-433c-855c-db0cc9656a78 7645f6cb-664b-4790-b507-7f04d533a3d2 . DNAH6 NM_001370 exon62 c.10306delC p.Q3436fs . . 138.0 48.0 121.0 0.0 . 194 . . Atlas-INDEL