Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm AGRN 375790 hgsc.bcm.edu hg19 1 980903 980903 + Missense_Mutation SNP C C A rs138248828 bycluster;byfrequency;alternate_allele TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . AGRN NM_198576 exon14 c.C2536A p.P846T TGTACACGTGAGT . 27.0 26.0 48.0 0.0 . 110 . C|1.000;T|0.000 Atlas-SNP IGSF3 3321 hgsc.bcm.edu hg19 1 117122291 117122291 + Missense_Mutation SNP C C G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 IGSF3_ENST00000369483,NS,carcinoma,0,4 IGSF3 NM_001542 exon11 c.G3117C p.E1039D GTCGTCCTCCTCC . 70.0 4.0 68.0 0.0 . 294 . . Atlas-SNP ATP8B2 57198 hgsc.bcm.edu hg19 1 154318730 154318730 + Missense_Mutation SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ATP8B2 NM_020452 exon25 c.G2901A p.M967I GAGCATGGAGTAC . 151.0 38.0 115.0 0.0 . 158 . . Atlas-SNP TMEM79 84283 hgsc.bcm.edu hg19 1 156261286 156261286 + Missense_Mutation SNP T T C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . TMEM79 NM_032323 exon4 c.T1082C p.F361S ACATGTTCGTGGT . 87.0 25.0 58.0 0.0 . 43 . . Atlas-SNP TMEM79 84283 hgsc.bcm.edu hg19 1 156261289 156261289 + Missense_Mutation SNP T T C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . TMEM79 NM_032323 exon4 c.T1085C p.V362A TGTTCGTGGTGGA . 85.0 23.0 59.0 0.0 . 43 . . Atlas-SNP COPA 1314 hgsc.bcm.edu hg19 1 160309715 160309715 + Missense_Mutation SNP T T C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . COPA NM_001098398 exon3 c.A212G p.D71G TAGTCATCTCCTC . 105.0 61.0 71.0 0.0 . 181 . . Atlas-SNP USF1 7391 hgsc.bcm.edu hg19 1 161011957 161011957 + Silent SNP A A C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . USF1 NM_001276373 exon5 c.T225G p.T75T TCCCTCAGTTTGG . 167.0 53.0 87.0 0.0 . 29 . . Atlas-SNP C1orf112 55732 hgsc.bcm.edu hg19 1 169799444 169799444 + Silent SNP C C A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . C1orf112 NM_018186 exon14 c.C1359A p.T453T GATCACCTCTTTG . 84.0 34.0 49.0 0.0 . 74 . . Atlas-SNP CR1 1378 hgsc.bcm.edu hg19 1 207785177 207785177 + Missense_Mutation SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . CR1 NM_000651 exon38 c.C6451T p.P2151S TGGAGCCCTGAAG . 189.0 124.0 125.0 0.0 . 354 . . Atlas-SNP CAMK1G 57172 hgsc.bcm.edu hg19 1 209785166 209785166 + Missense_Mutation SNP C C A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . CAMK1G NM_020439 exon11 c.C945A p.H315Q GGTGCACCACATG . 72.0 25.0 38.0 0.0 . 49 . . Atlas-SNP FBXO28 23219 hgsc.bcm.edu hg19 1 224340935 224340935 + Missense_Mutation SNP T T G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . FBXO28 NM_015176 exon4 c.T608G p.I203R GGGATATATCCTC . 154.0 53.0 86.0 0.0 . 34 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228548151 228548151 + Missense_Mutation SNP G G T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . OBSCN NM_052843 exon81 c.G19558T p.A6520S GGGCATGCACTGG . 62.0 19.0 39.0 0.0 . 2142 . . Atlas-SNP RHOU 58480 hgsc.bcm.edu hg19 1 228871685 228871685 + Missense_Mutation SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . RHOU NM_021205 exon1 c.G196A p.V66M AGCCTGGTGGTGA . 76.0 25.0 32.0 0.0 . 20 . . Atlas-SNP ZNF124 7678 hgsc.bcm.edu hg19 1 247320147 247320147 + Silent SNP T T C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ZNF124 NM_003431 exon4 c.A591G p.E197E GGGTTCTTCACCA . 141.0 39.0 95.0 0.0 . 39 . . Atlas-SNP MBOAT2 129642 hgsc.bcm.edu hg19 2 9017206 9017206 + Missense_Mutation SNP T T A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . MBOAT2 NM_138799 exon7 c.A644T p.N215I TTTCCATTTTCAC . 108.0 54.0 117.0 0.0 . 36 . . Atlas-SNP MBOAT2 129642 hgsc.bcm.edu hg19 2 9017208 9017208 + Missense_Mutation SNP T T G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . MBOAT2 NM_138799 exon7 c.A642C p.E214D TCCATTTTCACCA . 108.0 55.0 121.0 0.0 . 36 . . Atlas-SNP GREB1 9687 hgsc.bcm.edu hg19 2 11751071 11751071 + Missense_Mutation SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . GREB1 NM_014668 exon18 c.C2924T p.A975V GGCTGGCGCTGGA . 177.0 71.0 184.0 0.0 . 308 . . Atlas-SNP THADA 63892 hgsc.bcm.edu hg19 2 43460007 43460007 + Missense_Mutation SNP G G T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . THADA NM_001083953 exon37 c.C5311A p.Q1771K CCACCTGGCAGAA . 189.0 85.0 180.0 0.0 . 131 . . Atlas-SNP SFXN5 94097 hgsc.bcm.edu hg19 2 73195626 73195626 + Missense_Mutation SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . SFXN5 NM_144579 exon12 c.C778T p.P260S GCATGGGCAGGAC . 211.0 95.0 209.0 0.0 . 31 . . Atlas-SNP CCT7 10574 hgsc.bcm.edu hg19 2 73479792 73479792 + Missense_Mutation SNP A A T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . CCT7 NM_006429 exon12 c.A1435T p.I479F GTAGACATCAACA . 234.0 92.0 230.0 0.0 . 60 . . Atlas-SNP CTNNA2 1496 hgsc.bcm.edu hg19 2 80816543 80816543 + Missense_Mutation SNP G G T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . CTNNA2 NM_001164883 exon15 c.G2122T p.G708C GACAGCGGCAATG . 215.0 94.0 230.0 0.0 . 462 . . Atlas-SNP CTNNA2 1496 hgsc.bcm.edu hg19 2 80816544 80816544 + Missense_Mutation SNP G G T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . CTNNA2 NM_001164883 exon15 c.G2123T p.G708V ACAGCGGCAATGA . 211.0 91.0 234.0 0.0 . 462 . . Atlas-SNP TMEM87B 84910 hgsc.bcm.edu hg19 2 112839010 112839010 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . TMEM87B NM_032824 exon8 c.G753A p.W251X GTTCTGGATTGCA . 96.0 47.0 74.0 0.0 . 52 . . Atlas-SNP ZC3H6 376940 hgsc.bcm.edu hg19 2 113089743 113089743 + Missense_Mutation SNP G G T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ZC3H6 NM_198581 exon12 c.G3248T p.S1083I AAAGTAGTGACAA . 302.0 148.0 310.0 0.0 . 93 . . Atlas-SNP BAZ2B 29994 hgsc.bcm.edu hg19 2 160257109 160257109 + Splice_Site SNP C C A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . BAZ2B NM_013450 exon18 c.2898+1G>T . CTTCTACCTCTAG . 277.0 134.0 249.0 1.0 . 196 . . Atlas-SNP ABCA12 26154 hgsc.bcm.edu hg19 2 215876718 215876718 + Missense_Mutation SNP G G T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ABCA12 NM_173076 exon16 c.C2098A p.P700T TTCTGGGCAGATG . 95.0 49.0 92.0 0.0 . 368 . . Atlas-SNP SCG2 7857 hgsc.bcm.edu hg19 2 224462698 224462698 + Missense_Mutation SNP C C A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . SCG2 NM_003469 exon2 c.G1303T p.D435Y AAATATCCTCAAC . 83.0 41.0 61.0 0.0 . 99 . . Atlas-SNP SP110 3431 hgsc.bcm.edu hg19 2 231042313 231042313 + Missense_Mutation SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 SP110_ENST00000540870,right_upper_lobe,carcinoma,0,2 SP110 NM_001185015 exon15 c.G1549A p.A517T TCTTTGCGTTCCT . 102.0 39.0 93.0 0.0 . 105 . . Atlas-SNP BHLHE40 8553 hgsc.bcm.edu hg19 3 5022091 5022091 + Missense_Mutation SNP A A C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . BHLHE40 NM_003670 exon3 c.A256C p.T86P AAACTTACAGTAA . 106.0 50.0 98.0 0.0 . 35 . . Atlas-SNP TATDN2 9797 hgsc.bcm.edu hg19 3 10301858 10301858 + Missense_Mutation SNP C C G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . TATDN2 NM_014760 exon3 c.C452G p.S151C CAAACTCTGAATT . 198.0 94.0 192.0 0.0 . 59 . . Atlas-SNP TTC21A 199223 hgsc.bcm.edu hg19 3 39159608 39159608 + Silent SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 TTC21A,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1 TTC21A NM_145755 exon7 c.C765T p.T255T TCTAACCGTGCAT . 72.0 35.0 83.0 0.0 . 96 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266113 41266113 + Missense_Mutation SNP C C A rs121913403 bycluster TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 CTNNB1,gallbladder,other,0,1 CTNNB1 NM_001098209 exon3 c.C110A p.S37Y TCCATTCTGGTGC . 121.0 57.0 144.0 0.0 . 4904 . . Atlas-SNP PRSS42 339906 hgsc.bcm.edu hg19 3 46871983 46871983 + Missense_Mutation SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . PRSS42 NM_182702 exon5 c.G793A p.G265R AATCTCCCTAGAG . 60.0 27.0 79.0 0.0 . 17 . . Atlas-SNP SETD2 29072 hgsc.bcm.edu hg19 3 47161670 47161670 + Splice_Site SNP A A C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . SETD2 NM_014159 exon4 c.4454+2T>G . AGACTTACCTTTC . 42.0 24.0 34.0 0.0 . 721 . . Atlas-SNP AMIGO3 386724 hgsc.bcm.edu hg19 3 49755432 49755432 + Silent SNP G G T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . AMIGO3 NM_198722 exon1 c.C1467A p.G489G CTCAGAGCCAGCC . 58.0 8.0 44.0 0.0 . 40 . . Atlas-SNP SLC9C1 285335 hgsc.bcm.edu hg19 3 111901012 111901012 + Missense_Mutation SNP C C A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . . NM_183061 exon21 c.G2617T p.D873Y TTTTATCTAGCCA . 319.0 143.0 270.0 1.0 . . . . Atlas-SNP TM4SF4 7104 hgsc.bcm.edu hg19 3 149205519 149205519 + Silent SNP A A G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . TM4SF4 NM_004617 exon3 c.A378G p.T126T TAGTACATGGGGC . 89.0 38.0 95.0 0.0 . 27 . . Atlas-SNP PIK3CA 5290 hgsc.bcm.edu hg19 3 178952085 178952085 + Missense_Mutation SNP A A T rs121913279 bycluster TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 PIK3CA_ENST00000263967,NS,adenocarcinoma,0,2044 PIK3CA NM_006218 exon21 c.A3140T p.H1047L ATGCACATCATGG . 148.0 63.0 120.0 0.0 . 8460 . . Atlas-SNP KCNMB3 27094 hgsc.bcm.edu hg19 3 178968889 178968889 + Missense_Mutation SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . KCNMB3 NM_014407 exon1 c.G3A p.M1I AAAGTCCATCTAA . 92.0 38.0 107.0 0.0 . 46 . . Atlas-SNP TADA2B 93624 hgsc.bcm.edu hg19 4 7056326 7056326 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 TADA2B,NS,carcinoma,0,1 TADA2B NM_152293 exon2 c.G808T p.E270X TGCAAGGAGTTTG . 125.0 54.0 111.0 0.0 . 29 . . Atlas-SNP PCDH10 57575 hgsc.bcm.edu hg19 4 134072506 134072506 + Missense_Mutation SNP G G T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . PCDH10 NM_032961 exon1 c.G1211T p.R404L CTTTCCGCCTCAA . 75.0 35.0 73.0 0.0 . 290 . . Atlas-SNP TTC29 83894 hgsc.bcm.edu hg19 4 147724829 147724829 + Silent SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . TTC29 NM_031956 exon11 c.C1110T p.Y370Y TTTGTTGTAGTAT . 49.0 22.0 39.0 0.0 . 63 . . Atlas-SNP KIAA0947 23379 hgsc.bcm.edu hg19 5 5461382 5461382 + Silent SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . KIAA0947 NM_015325 exon13 c.C1935T p.P645P TAATCCCCAGTCT . 110.0 53.0 95.0 0.0 . 301 . . Atlas-SNP NIPBL 25836 hgsc.bcm.edu hg19 5 36971138 36971138 + Silent SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . NIPBL NM_015384 exon7 c.C771T p.D257D TAGTGACGTATGT . 201.0 84.0 190.0 0.0 . 513 . . Atlas-SNP TRIM36 55521 hgsc.bcm.edu hg19 5 114469810 114469810 + Silent SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . TRIM36 NM_018700 exon8 c.C1281T p.S427S AACTTTGCTCTGT . 63.0 25.0 65.0 0.0 . 126 . . Atlas-SNP SLC23A1 9963 hgsc.bcm.edu hg19 5 138713935 138713935 + Missense_Mutation SNP C C G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . SLC23A1 NM_152685 exon11 c.G1297C p.G433R TGCCCCCCAGGAT . 281.0 116.0 249.0 0.0 . 51 . . Atlas-SNP RARS 5917 hgsc.bcm.edu hg19 5 167919732 167919732 + Silent SNP C C G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . RARS NM_002887 exon3 c.C249G p.V83V AGAGGTCTTTGGT . 105.0 59.0 120.0 0.0 . 58 . . Atlas-SNP SCUBE3 222663 hgsc.bcm.edu hg19 6 35207632 35207632 + Missense_Mutation SNP C C G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . SCUBE3 NM_152753 exon8 c.C933G p.I311M TCTCATCAATGAG . 75.0 43.0 48.0 0.0 . 99 . . Atlas-SNP GPR111 222611 hgsc.bcm.edu hg19 6 47647896 47647896 + Silent SNP A A G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . GPR111 NM_153839 exon6 c.A357G p.L119L GTTGCTACAAAAG . 213.0 93.0 207.0 0.0 . 123 . . Atlas-SNP C6orf70 55780 hgsc.bcm.edu hg19 6 170181592 170181592 + Missense_Mutation SNP A A G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . C6orf70 NM_018341 exon18 c.A2020G p.S674G TCCACAAGTAAAG . 90.0 85.0 185.0 0.0 . 63 . . Atlas-SNP DFNA5 1687 hgsc.bcm.edu hg19 7 24784273 24784273 + Silent SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . DFNA5 NM_001127453 exon3 c.G312A p.G104G GCTGCCCCCCAGG . 119.0 41.0 72.0 0.0 . 51 . . Atlas-SNP SSPO 23145 hgsc.bcm.edu hg19 7 149483308 149483308 + Missense_Mutation SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . . NM_198455 exon23 c.G3376A p.G1126R TGGGATGGAGATC . 31.0 12.0 38.0 0.0 . . . . Atlas-SNP SHH 6469 hgsc.bcm.edu hg19 7 155595681 155595681 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . SHH NM_000193 exon3 c.G1302A p.W434X CGAGTACCAGTGG . 765.0 370.0 862.0 0.0 . 34 . . Atlas-SNP RP1 6101 hgsc.bcm.edu hg19 8 55539105 55539105 + Missense_Mutation SNP C C G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . RP1 NM_006269 exon4 c.C2663G p.A888G AACATGCTACAAC . 167.0 82.0 124.0 0.0 . 429 . . Atlas-SNP ARHGAP39 80728 hgsc.bcm.edu hg19 8 145772918 145772918 + Missense_Mutation SNP C C G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ARHGAP39 NM_025251 exon6 c.G1552C p.V518L GCTCCACAAGCAG . 56.0 18.0 26.0 0.0 . 80 . . Atlas-SNP APBA1 320 hgsc.bcm.edu hg19 9 72131502 72131502 + Missense_Mutation SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . APBA1 NM_001163 exon2 c.G625A p.A209T CGCGTGCGTCCAG . 24.0 11.0 15.0 0.0 . 96 . . Atlas-SNP FNBP1 23048 hgsc.bcm.edu hg19 9 132662721 132662721 + Missense_Mutation SNP C C T rs200153012 bycluster;alternate_allele TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . FNBP1 NM_015033 exon14 c.G1534A p.A512T CCTGGGCGCAGTT . 70.0 37.0 84.0 0.0 . 51 . . Atlas-SNP FCN1 2219 hgsc.bcm.edu hg19 9 137804337 137804337 + Missense_Mutation SNP G G C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . FCN1 NM_002003 exon7 c.C593G p.A198G CCCTGGGCAGTCA . 40.0 25.0 24.0 0.0 . 62 . . Atlas-SNP KIAA1984 84960 hgsc.bcm.edu hg19 9 139694929 139694929 + Missense_Mutation SNP T T A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . KIAA1984 NM_001039374 exon5 c.T527A p.L176Q ACCTGCTGGATTA . 83.0 38.0 77.0 0.0 . 39 . . Atlas-SNP NSUN6 221078 hgsc.bcm.edu hg19 10 18840757 18840757 + Missense_Mutation SNP T T A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . NSUN6 NM_182543 exon9 c.A1066T p.T356S CTGCAGTGAAGAG . 127.0 57.0 117.0 0.0 . 46 . . Atlas-SNP PARG 8505 hgsc.bcm.edu hg19 10 51028243 51028243 + Missense_Mutation SNP T T C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . PARG NM_003631 exon17 c.A2744G p.H915R AAAATGTGCATGC . 102.0 50.0 108.0 0.0 . 46 . . Atlas-SNP PHYHIPL 84457 hgsc.bcm.edu hg19 10 61005248 61005248 + Missense_Mutation SNP G G C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . PHYHIPL NM_032439 exon5 c.G1028C p.G343A CTGTGGGCACCGT . 47.0 45.0 98.0 0.0 . 44 . . Atlas-SNP EIF5AL1 143244 hgsc.bcm.edu hg19 10 81272785 81272785 + Missense_Mutation SNP A A C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 EIF5AL1_ENST00000520547,NS,carcinoma,0,2 EIF5AL1 NM_001099692 exon1 c.A380C p.Y127S AGAAGTACGACTG . 84.0 26.0 145.0 0.0 . 24 . . Atlas-SNP PTEN 5728 hgsc.bcm.edu hg19 10 89720875 89720875 + Missense_Mutation SNP G G T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 PTEN,colon,carcinoma,+1,2 PTEN NM_000314 exon8 c.G1026T p.K342N TTTTAAGGTCAGT . 136.0 117.0 265.0 0.0 . 3652 . . Atlas-SNP HMX3 340784 hgsc.bcm.edu hg19 10 124895764 124895764 + Silent SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . HMX3 NM_001105574 exon1 c.C198T p.A66A CGCCGCCGCTGCC . 122.0 5.0 127.0 0.0 . 24 . . Atlas-SNP ANO9 338440 hgsc.bcm.edu hg19 11 431763 431763 + Missense_Mutation SNP T T C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 ANO9,bladder,carcinoma,0,1 ANO9 NM_001012302 exon7 c.A470G p.E157G CGTCCCTCCCCCT . 59.0 5.0 45.0 0.0 . 61 . . Atlas-SNP TIMM10B 26515 hgsc.bcm.edu hg19 11 6503054 6503054 + Missense_Mutation SNP T T C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . . NM_012192 exon2 c.T107C p.L36S CCAGCTTGCACCA . 45.0 22.0 40.0 0.0 . . . . Atlas-SNP TAF10 6881 hgsc.bcm.edu hg19 11 6632187 6632187 + Missense_Mutation SNP C C A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . TAF10 NM_006284 exon5 c.G623T p.G208V TTGATGCCATACT . 172.0 84.0 154.0 0.0 . 9 . . Atlas-SNP OR5D14 219436 hgsc.bcm.edu hg19 11 55563231 55563231 + Missense_Mutation SNP A A C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . OR5D14 NM_001004735 exon1 c.A200C p.H67P TTAGTCACCTCTC . 75.0 40.0 78.0 0.0 . 116 . . Atlas-SNP MS4A6E 245802 hgsc.bcm.edu hg19 11 60107402 60107402 + Missense_Mutation SNP G G C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . MS4A6E NM_139249 exon3 c.G418C p.V140L ACTGCTGTGCTGC . 42.0 18.0 44.0 0.0 . 22 . . Atlas-SNP GAL3ST3 89792 hgsc.bcm.edu hg19 11 65810480 65810480 + Missense_Mutation SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . GAL3ST3 NM_033036 exon3 c.C794T p.A265V AGCTTGGCGTAGA . 51.0 25.0 35.0 0.0 . 40 . . Atlas-SNP SPTBN2 6712 hgsc.bcm.edu hg19 11 66456306 66456306 + Missense_Mutation SNP C C A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . SPTBN2 NM_006946 exon30 c.G6049T p.V2017L CAAACACAAGCAC . 33.0 10.0 33.0 0.0 . 188 . . Atlas-SNP DLG2 1740 hgsc.bcm.edu hg19 11 84996347 84996347 + Missense_Mutation SNP C C G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . DLG2 NM_001142699 exon4 c.G103C p.E35Q CTTCTTCTATCTT . 82.0 36.0 64.0 0.0 . 448 . . Atlas-SNP CACNA1C 775 hgsc.bcm.edu hg19 12 2613673 2613673 + Silent SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . CACNA1C NM_001167623 exon8 c.C1185T p.F395F CTTTTTCGTTCTA . 139.0 56.0 119.0 0.0 . 1023 . . Atlas-SNP DCN 1634 hgsc.bcm.edu hg19 12 91552214 91552214 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 DCN,rectum,carcinoma,+2,1 DCN NM_001920 exon4 c.C397T p.R133X AAAGTCGTTCCAA . 116.0 42.0 114.0 0.0 . 61 . . Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39435611 39435611 + Silent SNP G G C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . FREM2 NM_207361 exon15 c.G7563C p.P2521P AGAGCCGTTCTCA . 57.0 30.0 43.0 0.0 . 385 . . Atlas-SNP PHF11 51131 hgsc.bcm.edu hg19 13 50092193 50092193 + Missense_Mutation SNP T T A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . PHF11 NM_001040443 exon4 c.T364A p.C122S GTGGGATGTGATT . 298.0 134.0 307.0 0.0 . 20 . . Atlas-SNP PSMB11 122706 hgsc.bcm.edu hg19 14 23512092 23512092 + Missense_Mutation SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . PSMB11 NM_001099780 exon1 c.G658A p.G220R TATTCAGGGGGCT . 42.0 20.0 70.0 0.0 . 40 . . Atlas-SNP MYH6 4624 hgsc.bcm.edu hg19 14 23869968 23869968 + Missense_Mutation SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 MYH6,NS,malignant_melanoma,+1,1 MYH6 NM_002471 exon13 c.C1360T p.R454C ACTGGCGTGGCTG . 107.0 51.0 108.0 0.0 . 274 . . Atlas-SNP LRRC16B 90668 hgsc.bcm.edu hg19 14 24530143 24530143 + Missense_Mutation SNP C C G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . LRRC16B NM_138360 exon26 c.C2198G p.P733R TGTTTCCCAGCCT . 48.0 27.0 51.0 0.0 . 120 . . Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64653174 64653174 + Silent SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . SYNE2 NM_182914 exon97 c.G17589A p.Q5863Q GACTCAGAACTTG . 159.0 65.0 152.0 0.0 . 577 . . Atlas-SNP PLEKHH1 57475 hgsc.bcm.edu hg19 14 68042127 68042127 + Missense_Mutation SNP A A C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . PLEKHH1 NM_020715 exon15 c.A2107C p.K703Q CACTCCAAGGTGG . 71.0 33.0 83.0 0.0 . 118 . . Atlas-SNP SYNDIG1L 646658 hgsc.bcm.edu hg19 14 74876360 74876360 + Missense_Mutation SNP G G C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . SYNDIG1L NM_001105579 exon2 c.C88G p.P30A AGCTGGGTGGGGT . 119.0 60.0 115.0 0.0 . 24 . . Atlas-SNP NDN 4692 hgsc.bcm.edu hg19 15 23932089 23932089 + Silent SNP C C A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . NDN NM_002487 exon1 c.G276T p.P92P GGCTGGCGGTGCC . 35.0 20.0 36.0 0.0 . 79 . . Atlas-SNP NUSAP1 51203 hgsc.bcm.edu hg19 15 41657598 41657598 + Splice_Site SNP A A T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . NUSAP1 NM_016359 exon7 c.661-2A>T . CTCTTCAGCAGCA . 68.0 31.0 41.0 0.0 . 32 . . Atlas-SNP RCN2 5955 hgsc.bcm.edu hg19 15 77236169 77236169 + Missense_Mutation SNP A A G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . RCN2 NM_001271837 exon5 c.A572G p.E191G TTGAAGAATTTAT . 286.0 138.0 230.0 0.0 . 16 . . Atlas-SNP NTRK3 4916 hgsc.bcm.edu hg19 15 88476268 88476268 + Missense_Mutation SNP G G T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . NTRK3 NM_001012338 exon16 c.C1864A p.H622N CTCCATGCTTCAT . 78.0 28.0 95.0 0.0 . 587 . . Atlas-SNP SOLH 6650 hgsc.bcm.edu hg19 16 601629 601629 + Missense_Mutation SNP G G C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . SOLH NM_005632 exon9 c.G2310C p.E770D CAGTGAGGGTGTC . 27.0 16.0 35.0 0.0 . 47 . . Atlas-SNP ITGAD 3681 hgsc.bcm.edu hg19 16 31422694 31422694 + Silent SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ITGAD NM_005353 exon14 c.G1563A p.G521G CTTTGGGGCAGCC . 112.0 56.0 100.0 0.0 . 154 . . Atlas-SNP CNOT1 23019 hgsc.bcm.edu hg19 16 58579334 58579334 + Missense_Mutation SNP C C A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . CNOT1 NM_206999 exon30 c.G4068T p.Q1356H GCTGTACTGTGGC . 184.0 103.0 148.0 0.0 . 359 . . Atlas-SNP TAT 6898 hgsc.bcm.edu hg19 16 71604715 71604715 + Missense_Mutation SNP T T C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . TAT NM_000353 exon8 c.A779G p.Y260C GGTTCATATTTGC . 115.0 51.0 114.0 0.0 . 80 . . Atlas-SNP C17orf66 256957 hgsc.bcm.edu hg19 17 34192249 34192249 + Missense_Mutation SNP T T A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . C17orf66 NM_152781 exon3 c.A290T p.K97M AACATCTTCTCAG . 124.0 58.0 96.0 0.0 . 57 . . Atlas-SNP KRTAP1-3 81850 hgsc.bcm.edu hg19 17 39191019 39191019 + Missense_Mutation SNP T T C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . KRTAP1-3 NM_030966 exon1 c.A55G p.T19A CGCATGTCCCACT . 138.0 99.0 99.0 0.0 . 18 . . Atlas-SNP MPP3 4356 hgsc.bcm.edu hg19 17 41898313 41898313 + Silent SNP G G A rs377033537 alternate_allele TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . MPP3 NM_001932 exon11 c.C798T p.D266D GGGGTCGTCCTGG . 153.0 41.0 99.0 0.0 . 42 . . Atlas-SNP TBC1D16 125058 hgsc.bcm.edu hg19 17 77921567 77921567 + Silent SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . TBC1D16 NM_019020 exon9 c.C1605T p.D535D CACCAGGTCCGAC . 126.0 47.0 98.0 0.0 . 48 . . Atlas-SNP ZNF516 9658 hgsc.bcm.edu hg19 18 74153982 74153982 + Silent SNP C C A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ZNF516 NM_014643 exon3 c.G1029T p.L343L TGTAAACAGGTTC . 48.0 17.0 42.0 0.0 . 102 . . Atlas-SNP ARRDC5 645432 hgsc.bcm.edu hg19 19 4896768 4896768 + Missense_Mutation SNP A A G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ARRDC5 NM_001080523 exon2 c.T416C p.M139T CTGCCCATGCAGG . 158.0 77.0 167.0 0.0 . 19 . . Atlas-SNP ZNF177 7730 hgsc.bcm.edu hg19 19 9488995 9488995 + Missense_Mutation SNP C C A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ZNF177 NM_003451 exon5 c.C8A p.A3E TGGCTGCAGGGTG . 296.0 135.0 289.0 0.0 . 57 . . Atlas-SNP ZNF93 81931 hgsc.bcm.edu hg19 19 20044590 20044590 + Nonsense_Mutation SNP A A T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ZNF93 NM_031218 exon4 c.A826T p.K276X AAACATAAGAAAA . 76.0 41.0 66.0 0.0 . 81 . . Atlas-SNP ZBTB32 27033 hgsc.bcm.edu hg19 19 36207625 36207625 + Missense_Mutation SNP C C A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ZBTB32 NM_014383 exon6 c.C1435A p.P479T ACCTCTCCCTGTT . 33.0 13.0 38.0 0.0 . 33 . . Atlas-SNP MLL4 8085 hgsc.bcm.edu hg19 19 36213570 36213570 + Missense_Mutation SNP C C G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . MLL4 NM_014727 exon5 c.C2672G p.P891R ATGTCCCTCGCCT . 79.0 41.0 81.0 0.0 . 229 . . Atlas-SNP MLL4 8085 hgsc.bcm.edu hg19 19 36219050 36219050 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . MLL4 NM_014727 exon19 c.C4549T p.R1517X TACTGGCGACGGA . 63.0 29.0 61.0 0.0 . 229 . . Atlas-SNP GLTSCR1 29998 hgsc.bcm.edu hg19 19 48204913 48204913 + Silent SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . GLTSCR1 NM_015711 exon15 c.C3924T p.L1308L CGGGCTCAAGCTC . 164.0 83.0 156.0 0.0 . 79 . . Atlas-SNP ZNF816-ZNF321P 100529240 hgsc.bcm.edu hg19 19 53432594 53432594 + Silent SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . . NM_001202473 exon4 c.G264A p.G88G CAATGTCCCTGTG . 64.0 21.0 64.0 0.0 . . . . Atlas-SNP ZNF835 90485 hgsc.bcm.edu hg19 19 57175001 57175001 + Silent SNP A A G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ZNF835 NM_001005850 exon2 c.T1566C p.C522C CTGTTGACAGGTT . 107.0 40.0 109.0 0.0 . 106 . . Atlas-SNP CLDN8 9073 hgsc.bcm.edu hg19 21 31587841 31587841 + Missense_Mutation SNP T T G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . CLDN8 NM_199328 exon1 c.A403C p.I135L CAGGGATGAGCAC . 69.0 31.0 67.0 0.0 . 40 . . Atlas-SNP RUNX1 861 hgsc.bcm.edu hg19 21 36193995 36193995 + Splice_Site SNP T T A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . RUNX1 NM_001122607 exon6 c.725-2A>T . TTCCTCTGAGGGA . 122.0 55.0 128.0 0.0 . 687 . . Atlas-SNP SGSM1 129049 hgsc.bcm.edu hg19 22 25251281 25251281 + Missense_Mutation SNP A A G novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . SGSM1 NM_001098497 exon7 c.A553G p.M185V ACCAAGATGAAGA . 61.0 26.0 61.0 0.0 . 150 . . Atlas-SNP PLXNB2 23654 hgsc.bcm.edu hg19 22 50719562 50719562 + Missense_Mutation SNP C C A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . PLXNB2 NM_012401 exon23 c.G3719T p.G1240V TCCAGGCCCTCCA . 54.0 26.0 56.0 0.0 . 172 . . Atlas-SNP SSX7 280658 hgsc.bcm.edu hg19 X 52682011 52682011 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . SSX7 NM_173358 exon3 c.C93A p.Y31X AGAGAAGTATTTG . 736.0 340.0 695.0 0.0 . 34 . . Atlas-SNP SMC1A 8243 hgsc.bcm.edu hg19 X 53442011 53442011 + Missense_Mutation SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . SMC1A NM_006306 exon2 c.C217T p.P73S CAGCTGGCTTGCC . 117.0 46.0 104.0 0.0 . 112 . . Atlas-SNP DGAT2L6 347516 hgsc.bcm.edu hg19 X 69424178 69424178 + Missense_Mutation SNP C C A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . DGAT2L6 NM_198512 exon6 c.C671A p.S224Y CATATTCCTTTGG . 243.0 121.0 237.0 0.0 . 40 . . Atlas-SNP CHIC1 53344 hgsc.bcm.edu hg19 X 72783364 72783364 + Missense_Mutation SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . CHIC1 NM_001039840 exon1 c.C244T p.R82W CATCTGCGGAGAT . 210.0 90.0 198.0 0.0 . 13 . . Atlas-SNP ARMCX6 54470 hgsc.bcm.edu hg19 X 100871397 100871397 + Missense_Mutation SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ARMCX6 NM_001184768 exon4 c.G214A p.D72N CCCCATCCTCAGT . 99.0 42.0 91.0 0.0 . 21 . . Atlas-SNP COL4A5 1287 hgsc.bcm.edu hg19 X 107821329 107821329 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . COL4A5 NM_000495 exon12 c.C667T p.Q223X AATTTCCAGGGAC . 548.0 233.0 490.0 0.0 . 262 . . Atlas-SNP GUCY2F 2986 hgsc.bcm.edu hg19 X 108718938 108718938 + Silent SNP C C T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . GUCY2F NM_001522 exon2 c.G228A p.A76A TAATCGCGCAGCA . 392.0 181.0 420.0 0.0 . 178 . . Atlas-SNP TENM1 10178 hgsc.bcm.edu hg19 X 123870898 123870898 + Missense_Mutation SNP G G T novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . . NM_001163278 exon4 c.C685A p.P229T CAGCTGGGCTGGG . 89.0 45.0 79.0 0.0 . . . . Atlas-SNP RAB39B 116442 hgsc.bcm.edu hg19 X 154490389 154490389 + Missense_Mutation SNP T T A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . RAB39B NM_171998 exon2 c.A341T p.Y114F ATTTGGTAGGGCT . 68.0 36.0 64.0 0.0 . 37 . . Atlas-SNP COX3 5742 hgsc.bcm.edu hg19 MT 9295 9295 + Missense_Mutation SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . . ENST00000362079 exon1 c.G89A p.G30D CCTCCGGCCTAGC . 19.0 5.0 5.0 0.0 . . . . Atlas-SNP ND4 0 hgsc.bcm.edu hg19 MT 10911 10911 + Missense_Mutation SNP G G A novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . . ENST00000361381 exon1 c.G152A p.S51N TATTTAGCTGTTC . 15.0 15.0 7.0 0.0 . . . . Atlas-SNP CMAHP 8418 hgsc.bcm.edu hg19 6 25108883 25108883 + RNA DEL C C - novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . CMAHP . . . . . . 92.0 45.0 92.0 0.0 . 6 . . Atlas-INDEL SMIM20 0 hgsc.bcm.edu hg19 4 25930802 25930802 + Frame_Shift_Del DEL G G - novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . . NM_001145432 exon3 c.192delT p.F64fs . . 122.0 49.0 68.0 0.0 . . . . Atlas-INDEL RCOR3 55758 hgsc.bcm.edu hg19 1 211486101 211486105 + Frame_Shift_Del DEL ATGTA ATGTA - novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 ATGTA ATGTA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . RCOR3 NM_001136225 exon11 c.1114_1118del p.372_373del . . 252.0 77.0 154.0 0.0 . 51 . . Atlas-INDEL MYO9B 4650 hgsc.bcm.edu hg19 19 17298768 17298768 + Frame_Shift_Del DEL C C - novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . MYO9B NM_004145 exon19 c.2601delG p.E867fs . . 54.0 34.0 48.0 0.0 . 264 . . Atlas-INDEL KRT2 3849 hgsc.bcm.edu hg19 12 53045637 53045638 + In_Frame_Ins INS - - CAAAGCCGCTGCCGCCTC novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 .,2 KRT2 NM_000423 exon1 c.290_291insGAGGCGGCAGCGGCTTTG p.G97delinsGGGSGFG . . 156.0 71.0 153.0 0.0 . 94 . . Atlas-INDEL ZNF506 440515 hgsc.bcm.edu hg19 19 19905517 19905544 + Frame_Shift_Del DEL TCCAGTATGAATTATCTTATGTTCAGTT TCCAGTATGAATTATCTTATGTTCAGTT - novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 TCCAGTATGAATTATCTTATGTTCAGTT TCCAGTATGAATTATCTTATGTTCAGTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ZNF506 NM_001099269 exon4 c.1153_1180del p.385_394del . . 48.0 16.0 60.0 0.0 . 36 . . Atlas-INDEL ESPN 83715 hgsc.bcm.edu hg19 1 6505818 6505819 + Frame_Shift_Ins INS - - C novel TCGA-DD-AAD0-01A-11D-A40R-10 TCGA-DD-AAD0-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4463ea73-26d1-4e24-a97d-0302bb2dd21b 15b4a966-4206-4903-8558-da5d6cb55540 . ESPN NM_031475 exon7 c.1287_1288insC p.T429fs . . 61.0 10.0 65.0 0.0 . 32 . . Atlas-INDEL