Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
LRRC38	126755	hgsc.bcm.edu	hg19	1	13839553	13839553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	LRRC38,colon,carcinoma,0,1	LRRC38	NM_001010847	exon1	c.G536T	p.R179L	AGGGAGCGCAGCG	.	125.0	30.0	146.0	0.0	.	12	.	.	Atlas-SNP
NR0B2	8431	hgsc.bcm.edu	hg19	1	27238458	27238458	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	NR0B2	NM_021969	exon2	c.C652G	p.L218V	TGAGGAGGACACG	.	194.0	66.0	227.0	0.0	.	14	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152280880	152280880	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	FLG,NS,carcinoma,0,1	FLG	NM_002016	exon3	c.C6482G	p.S2161C	TGTCCAGACCTAT	.	128.0	37.0	132.0	0.0	.	900	.	.	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	hg19	1	152326575	152326575	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	FLG2	NM_001014342	exon3	c.A3687T	p.G1229G	TGTGGATCCTGAC	.	80.0	32.0	80.0	0.0	.	431	.	.	Atlas-SNP
NTRK1	4914	hgsc.bcm.edu	hg19	1	156849081	156849081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	NTRK1	NM_002529	exon15	c.T1973C	p.V658A	GTCTAGTGGGCCA	.	36.0	12.0	46.0	0.0	.	287	.	.	Atlas-SNP
PTGS2	5743	hgsc.bcm.edu	hg19	1	186648486	186648486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	PTGS2_ENST00000367468,bladder,carcinoma,0,2	PTGS2	NM_000963	exon2	c.G137A	p.R46Q	CCTGTCCGGGTAC	.	140.0	47.0	134.0	1.0	.	144	.	.	Atlas-SNP
CDC42BPA	8476	hgsc.bcm.edu	hg19	1	227381544	227381544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	CDC42BPA	NM_003607	exon5	c.A542G	p.Y181C	GCCAAGTAAAATC	.	74.0	23.0	73.0	0.0	.	528	.	.	Atlas-SNP
KIAA1804	0	hgsc.bcm.edu	hg19	1	233518139	233518139	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	KIAA1804	NM_032435	exon10	c.C2793T	p.V931V	GGAGGTCTCACCC	.	113.0	32.0	102.0	0.0	.	129	.	.	Atlas-SNP
HEATR5B	54497	hgsc.bcm.edu	hg19	2	37283648	37283648	+	Silent	SNP	G	G	A	rs200961568	alternate_allele	TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	HEATR5B	NM_019024	exon16	c.C2334T	p.V778V	GACTGAGACTCCG	.	488.0	150.0	529.0	0.0	.	185	.	G|0.999;C|0.001	Atlas-SNP
SMEK2	57223	hgsc.bcm.edu	hg19	2	55826140	55826140	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	SMEK2	NM_001122964	exon4	c.G333A	p.Q111Q	GAGGTCCTGTGTG	.	43.0	11.0	44.0	0.0	.	86	.	.	Atlas-SNP
PROKR1	10887	hgsc.bcm.edu	hg19	2	68882356	68882356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	PROKR1	NM_138964	exon2	c.G830T	p.R277L	GGCTGCGCTGCCG	.	94.0	32.0	76.0	0.0	.	69	.	.	Atlas-SNP
C2orf15	150590	hgsc.bcm.edu	hg19	2	99767090	99767090	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	C2orf15	NM_144706	exon4	c.T171C	p.D57D	GGATGATCACTTA	.	238.0	84.0	269.0	0.0	.	11	.	.	Atlas-SNP
SLC9A2	6549	hgsc.bcm.edu	hg19	2	103300708	103300708	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	SLC9A2	NM_003048	exon5	c.G1338T	p.V446V	GTTAGTGTTTCTC	.	120.0	43.0	114.0	0.0	.	112	.	.	Atlas-SNP
EPB41L5	57669	hgsc.bcm.edu	hg19	2	120836088	120836088	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	EPB41L5	NM_020909	exon10	c.A734T	p.Y245F	ATGACTATAGTTT	.	109.0	34.0	105.0	0.0	.	98	.	.	Atlas-SNP
ERMN	57471	hgsc.bcm.edu	hg19	2	158178164	158178164	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	ERMN	NM_001009959	exon4	c.A513G	p.E171E	CAGCCATTCAATT	.	91.0	28.0	94.0	0.0	.	31	.	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	hg19	2	225679061	225679061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	DOCK10	NM_014689	exon31	c.T3385C	p.S1129P	GAGTCGATTCTGA	.	33.0	11.0	33.0	0.0	.	308	.	.	Atlas-SNP
SLC19A3	80704	hgsc.bcm.edu	hg19	2	228552226	228552226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	SLC19A3	NM_025243	exon6	c.A1378G	p.I460V	AGGTAATATACAT	.	91.0	28.0	93.0	0.0	.	62	.	.	Atlas-SNP
NMUR1	10316	hgsc.bcm.edu	hg19	2	232390063	232390063	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	NMUR1	NM_006056	exon3	c.A972G	p.S324S	CCACTGTGACACG	.	202.0	70.0	198.0	0.0	.	46	.	.	Atlas-SNP
SETMAR	6419	hgsc.bcm.edu	hg19	3	4358293	4358293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	SETMAR	NM_006515	exon3	c.T1418G	p.F473C	GTCGTTTTGAAGT	.	95.0	36.0	107.0	0.0	.	30	.	.	Atlas-SNP
SETMAR	6419	hgsc.bcm.edu	hg19	3	4358307	4358307	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	SETMAR	NM_006515	exon3	c.T1432G	p.S478A	TCATCTTCTCTTA	.	88.0	35.0	112.0	0.0	.	30	.	.	Atlas-SNP
METTL6	131965	hgsc.bcm.edu	hg19	3	15466502	15466502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	METTL6	NM_152396	exon3	c.A320G	p.Y107C	CAGGCATAGGCAA	.	249.0	78.0	244.0	0.0	.	27	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	CTNNB1,gallbladder,other,-1,1	CTNNB1	NM_001098209	exon3	c.T97C	p.S33P	CTGGACTCTGGAA	.	130.0	39.0	118.0	0.0	.	4904	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266137	41266137	+	Missense_Mutation	SNP	C	C	A	rs121913409	bycluster	TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	CTNNB1,NS,carcinoma,+1,2	CTNNB1	NM_001098209	exon3	c.C134A	p.S45Y	CTCCTTCTCTGAG	.	115.0	45.0	102.0	0.0	.	4904	.	.	Atlas-SNP
FAM19A1	407738	hgsc.bcm.edu	hg19	3	68588000	68588000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	FAM19A1	NM_213609	exon4	c.G353T	p.C118F	GGATGTGCGCAAC	.	167.0	57.0	169.0	0.0	.	58	.	.	Atlas-SNP
VWA5B2	90113	hgsc.bcm.edu	hg19	3	183959370	183959370	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	VWA5B2	NM_138345	exon19	c.G3273A	p.S1091S	TGCCTCGCCCTTT	.	63.0	25.0	54.0	0.0	.	47	.	.	Atlas-SNP
DLG1	1739	hgsc.bcm.edu	hg19	3	196921381	196921381	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	DLG1	NM_001204386	exon5	c.A398C	p.E133A	ACCAATTCTGGAC	.	78.0	32.0	82.0	0.0	.	120	.	.	Atlas-SNP
WHSC1	7468	hgsc.bcm.edu	hg19	4	1952825	1952825	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	WHSC1	NM_133335	exon10	c.C1908T	p.P636P	CGAGCCCTCGGAG	.	64.0	14.0	76.0	0.0	.	180	.	.	Atlas-SNP
EVC	2121	hgsc.bcm.edu	hg19	4	5812081	5812081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	EVC	NM_153717	exon20	c.C2798T	p.T933I	TAAGGACTAAAAG	.	173.0	60.0	210.0	0.0	.	90	.	.	Atlas-SNP
GABRA2	2555	hgsc.bcm.edu	hg19	4	46264068	46264068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	GABRA2	NM_000807	exon9	c.G934A	p.A312T	CCATGGCAGTTGC	.	138.0	50.0	125.0	0.0	.	134	.	.	Atlas-SNP
TMPRSS11F	389208	hgsc.bcm.edu	hg19	4	68938054	68938054	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	TMPRSS11F	NM_207407	exon5	c.A501G	p.S167S	TCTAAATGATGGT	.	45.0	18.0	49.0	0.0	.	79	.	.	Atlas-SNP
GLRB	2743	hgsc.bcm.edu	hg19	4	158091870	158091870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	GLRB	NM_000824	exon10	c.T1484C	p.I495T	GGTCTATATATTT	.	46.0	14.0	40.0	0.0	.	74	.	.	Atlas-SNP
DDX60L	91351	hgsc.bcm.edu	hg19	4	169348266	169348266	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	DDX60L	NM_001012967	exon14	c.T1885C	p.L629L	CAATTAATCCTAA	.	150.0	6.0	139.0	0.0	.	116	.	.	Atlas-SNP
MARVELD2	153562	hgsc.bcm.edu	hg19	5	68715559	68715559	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MARVELD2	NM_001244734	exon2	c.C347A	p.S116X	AGTGTTCACCACC	.	78.0	31.0	58.0	0.0	.	49	.	.	Atlas-SNP
FNIP1	96459	hgsc.bcm.edu	hg19	5	131014861	131014861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	FNIP1	NM_133372	exon12	c.A1210G	p.I404V	TACAAATTGTTGT	.	316.0	14.0	385.0	0.0	.	104	.	.	Atlas-SNP
RBM27	54439	hgsc.bcm.edu	hg19	5	145610481	145610481	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	RBM27	NM_018989	exon6	c.850+1G>A	.	ATGATGGTAAAAA	.	82.0	27.0	103.0	0.0	.	119	.	.	Atlas-SNP
ATP10B	23120	hgsc.bcm.edu	hg19	5	160049550	160049550	+	Nonsense_Mutation	SNP	G	G	A	rs374261198	alternate_allele	TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	ATP10B	NM_025153	exon14	c.C1663T	p.R555X	CATCTCGAACCTT	.	72.0	29.0	68.0	0.0	.	201	.	.	Atlas-SNP
CFB	629	hgsc.bcm.edu	hg19	6	31918993	31918993	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	CFB	NM_001710	exon15	c.A1928C	p.K643T	CTCGGAAGGAGGT	.	65.0	19.0	70.0	0.0	.	33	.	.	Atlas-SNP
CFB	629	hgsc.bcm.edu	hg19	6	31919010	31919010	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	CFB	NM_001710	exon15	c.A1945T	p.N649Y	ATCAAGAATGGGG	.	55.0	17.0	72.0	0.0	.	33	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32038115	32038115	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	TNXB	NM_019105	exon14	c.A5067G	p.S1689S	GCGCAGTGAGTCT	.	103.0	35.0	112.0	0.0	.	553	.	.	Atlas-SNP
COL11A2	1302	hgsc.bcm.edu	hg19	6	33154482	33154482	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	COL11A2	NM_080681	exon5	c.G720A	p.Q240Q	GTGAGGCTGTTGG	.	80.0	23.0	117.0	0.0	.	124	.	.	Atlas-SNP
DAAM2	23500	hgsc.bcm.edu	hg19	6	39832239	39832239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	DAAM2	NM_015345	exon4	c.A289G	p.S97G	GCAACCAGCTGGC	.	37.0	11.0	56.0	0.0	.	101	.	.	Atlas-SNP
HSP90AB1	3326	hgsc.bcm.edu	hg19	6	44216462	44216462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	HSP90AB1	NM_007355	exon2	c.C96A	p.F32L	TACCTTCTATTCC	.	73.0	15.0	66.0	0.0	.	83	.	.	Atlas-SNP
SNAP91	9892	hgsc.bcm.edu	hg19	6	84304147	84304147	+	Missense_Mutation	SNP	C	C	T	rs200249566	bycluster	TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	SNAP91	NM_001242792	exon16	c.G1378A	p.A460T	CTGGTGCGGCGGC	.	73.0	4.0	82.0	0.0	.	199	.	.	Atlas-SNP
SHPRH	257218	hgsc.bcm.edu	hg19	6	146256475	146256475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	SHPRH	NM_173082	exon12	c.A2672G	p.H891R	TAGAGATGCTGAG	.	94.0	32.0	113.0	0.0	.	169	.	.	Atlas-SNP
OPRM1	4988	hgsc.bcm.edu	hg19	6	154414485	154414485	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	OPRM1	NM_001008505	exon4	c.T1245A	p.P415P	AGGACCTCTTGTC	.	62.0	25.0	65.0	0.0	.	241	.	.	Atlas-SNP
DFNA5	1687	hgsc.bcm.edu	hg19	7	24738645	24738645	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	DFNA5	NM_001127453	exon10	c.A1491T	p.X497C	ATGACATCATGAA	.	137.0	56.0	138.0	0.0	.	51	.	.	Atlas-SNP
C7orf10	79783	hgsc.bcm.edu	hg19	7	40234573	40234573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	C7orf10	NM_001193313	exon6	c.A419G	p.Y140C	AAAACTATGTCCC	.	29.0	10.0	34.0	0.0	.	99	.	.	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	hg19	7	53103849	53103849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	POM121L12	NM_182595	exon1	c.G485A	p.G162D	CCGCAGGCCGCCC	.	50.0	19.0	59.0	0.0	.	146	.	.	Atlas-SNP
ASL	435	hgsc.bcm.edu	hg19	7	65553861	65553861	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	ASL	NM_000048	exon11	c.C786G	p.L262L	CATCCTCTACTGC	.	72.0	28.0	70.0	0.0	.	39	.	.	Atlas-SNP
CDK14	5218	hgsc.bcm.edu	hg19	7	90546967	90546967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	CDK14	NM_012395	exon7	c.A700G	p.I234V	CGTTATATTTTGC	.	110.0	34.0	123.0	0.0	.	153	.	.	Atlas-SNP
MEST	4232	hgsc.bcm.edu	hg19	7	130140357	130140357	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MEST	NM_002402	exon8	c.T631G	p.F211V	AACTTCTTTGTAT	.	90.0	37.0	96.0	0.0	.	28	.	.	Atlas-SNP
C7orf55-LUC7L2	100996928	hgsc.bcm.edu	hg19	7	139097314	139097314	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	.	NM_001244584	exon9	c.A995T	p.K332M	ACAGCAAGAATCC	.	97.0	4.0	75.0	0.0	.	.	.	.	Atlas-SNP
MGAM	8972	hgsc.bcm.edu	hg19	7	141764321	141764321	+	Nonsense_Mutation	SNP	G	G	T	rs374771873		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MGAM	NM_004668	exon37	c.G4483T	p.E1495X	ACATACGAGTGAG	.	61.0	4.0	87.0	0.0	.	767	.	.	Atlas-SNP
MYBL1	4603	hgsc.bcm.edu	hg19	8	67505381	67505381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MYBL1	NM_001080416	exon7	c.G736T	p.V246F	GCTGAACATGTTC	.	615.0	97.0	439.0	0.0	.	73	.	.	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	125103743	125103743	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	FER1L6	NM_001039112	exon34	c.G4471T	p.G1491X	CTGGATGGACCCT	.	283.0	37.0	145.0	0.0	.	268	.	.	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	hg19	9	123921275	123921275	+	Missense_Mutation	SNP	C	C	T	rs145607154	bycluster;by1000genomes;alternate_allele	TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	CNTRL	NM_007018	exon29	c.C4907T	p.T1636I	AAGTAACTGAGAA	.	143.0	42.0	120.0	0.0	.	161	.	C|1.000;A|0.000	Atlas-SNP
GRIN1	2902	hgsc.bcm.edu	hg19	9	140056943	140056943	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	GRIN1	NM_001185091	exon14	c.C1902A	p.V634V	GGGCGTCCTGCTC	.	62.0	29.0	72.0	0.0	.	51	.	.	Atlas-SNP
WAPAL	23063	hgsc.bcm.edu	hg19	10	88197724	88197724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	WAPAL	NM_015045	exon18	c.A3460G	p.I1154V	TCATTATTGAAAA	.	392.0	123.0	360.0	0.0	.	81	.	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	hg19	10	106865229	106865229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	SORCS3	NM_014978	exon7	c.G1168T	p.D390Y	TCCATTGACATCA	.	56.0	25.0	73.0	0.0	.	282	.	.	Atlas-SNP
HABP2	3026	hgsc.bcm.edu	hg19	10	115337800	115337800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	HABP2	NM_004132	exon6	c.G464A	p.R155K	TATGCAGGCCAAA	.	54.0	28.0	53.0	0.0	.	52	.	.	Atlas-SNP
HABP2	3026	hgsc.bcm.edu	hg19	10	115337801	115337801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	HABP2	NM_004132	exon6	c.G465T	p.R155S	ATGCAGGCCAAAC	.	54.0	28.0	54.0	0.0	.	52	.	.	Atlas-SNP
EBF3	253738	hgsc.bcm.edu	hg19	10	131671777	131671777	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	EBF3_ENST00000355311,NS,carcinoma,0,2	EBF3	NM_001005463	exon8	c.C720T	p.H240H	CCTCCCGTGTTTG	.	29.0	13.0	59.0	0.0	.	193	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1087896	1087896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MUC2	NM_002457	exon25	c.A3371G	p.Y1124C	ACTACTACAACCC	.	53.0	11.0	53.0	0.0	.	614	.	.	Atlas-SNP
TRIM51	84767	hgsc.bcm.edu	hg19	11	55653151	55653151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	SPRYD5_ENST00000327733,NS,carcinoma,0,2	.	NM_032681	exon2	c.C247T	p.R83W	AGCCTCCGGCAAT	.	102.0	5.0	120.0	0.0	.	.	.	.	Atlas-SNP
TUT1	64852	hgsc.bcm.edu	hg19	11	62343405	62343405	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	TUT1	NM_022830	exon9	c.C1900T	p.Q634X	TGGGCTGCAGAAG	.	86.0	23.0	91.0	0.0	.	122	.	.	Atlas-SNP
B3GAT3	26229	hgsc.bcm.edu	hg19	11	62388013	62388013	+	Silent	SNP	G	G	A	rs143334227		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	B3GAT3	NM_012200	exon2	c.C213T	p.P71P	GGCCTCGGGTTCA	.	69.0	4.0	64.0	0.0	.	24	.	G|1.000;A|0.000	Atlas-SNP
DCUN1D5	84259	hgsc.bcm.edu	hg19	11	102937078	102937078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	DCUN1D5	NM_032299	exon6	c.A475G	p.I159V	TATCAATATCAAG	.	162.0	53.0	176.0	0.0	.	11	.	.	Atlas-SNP
NFRKB	4798	hgsc.bcm.edu	hg19	11	129745336	129745336	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	NFRKB	NM_006165	exon16	c.G1845A	p.L615L	ATTAGGCAGTCGA	.	53.0	20.0	60.0	0.0	.	101	.	.	Atlas-SNP
CLEC12B	387837	hgsc.bcm.edu	hg19	12	10163364	10163364	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	CLEC12B	NM_001129998	exon1	c.T6C	p.S2S	AATGTCTGAAGAA	.	65.0	31.0	59.0	0.0	.	25	.	.	Atlas-SNP
MAP3K12	7786	hgsc.bcm.edu	hg19	12	53879856	53879856	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MAP3K12	NM_001193511	exon4	c.G805C	p.D269H	TGAGATCCCTGTG	.	52.0	16.0	55.0	0.0	.	160	.	.	Atlas-SNP
HOXC8	3224	hgsc.bcm.edu	hg19	12	54405052	54405052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	HOXC8	NM_022658	exon2	c.A616G	p.K206E	TGGAAAAAGGAGA	.	50.0	16.0	69.0	0.0	.	15	.	.	Atlas-SNP
MARS	4141	hgsc.bcm.edu	hg19	12	57908591	57908591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MARS	NM_004990	exon16	c.A2056G	p.T686A	CATGTCACCCTGG	.	47.0	16.0	56.0	0.0	.	84	.	.	Atlas-SNP
TRHDE	29953	hgsc.bcm.edu	hg19	12	72936117	72936117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	TRHDE	NM_013381	exon7	c.T1634C	p.V545A	ATTCAGTTTTCCA	.	55.0	23.0	65.0	0.0	.	194	.	.	Atlas-SNP
CCDC62	84660	hgsc.bcm.edu	hg19	12	123265875	123265875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	CCDC62	NM_201435	exon3	c.G394A	p.E132K	GACCTTGAGGTTG	.	96.0	36.0	69.0	0.0	.	119	.	.	Atlas-SNP
SBNO1	55206	hgsc.bcm.edu	hg19	12	123834937	123834937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	SBNO1	NM_001167856	exon1	c.A52G	p.I18V	GACTAATTCCACT	.	101.0	39.0	100.0	0.0	.	138	.	.	Atlas-SNP
ZNF140	7699	hgsc.bcm.edu	hg19	12	133683150	133683150	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	ZNF140	NM_003440	exon5	c.T1287C	p.A429A	CCTTGCTAAACAT	.	34.0	14.0	33.0	0.0	.	18	.	.	Atlas-SNP
PCDH8	5100	hgsc.bcm.edu	hg19	13	53422358	53422358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	PCDH8	NM_032949	exon1	c.T214A	p.S72T	GCAGAGAGCTGTT	.	39.0	16.0	48.0	0.0	.	95	.	.	Atlas-SNP
CUL4A	8451	hgsc.bcm.edu	hg19	13	113900301	113900301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	CUL4A	NM_001008895	exon15	c.T1562C	p.I521T	GCCCTATAGACCT	.	103.0	41.0	96.0	0.0	.	50	.	.	Atlas-SNP
RAB15	376267	hgsc.bcm.edu	hg19	14	65418368	65418368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	RAB15	NM_198686	exon3	c.C199A	p.Q67K	TCTCCTGCCCTGC	.	65.0	24.0	97.0	0.0	.	23	.	.	Atlas-SNP
SETD3	84193	hgsc.bcm.edu	hg19	14	99865113	99865113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	SETD3	NM_032233	exon13	c.C1688G	p.T563S	GACCTGGTCCCAT	.	72.0	23.0	110.0	0.0	.	56	.	.	Atlas-SNP
RCOR1	23186	hgsc.bcm.edu	hg19	14	103188603	103188603	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	RCOR1	NM_015156	exon11	c.T1269G	p.F423L	AAACTTTTTTGTA	.	371.0	114.0	348.0	0.0	.	39	.	.	Atlas-SNP
OCA2	4948	hgsc.bcm.edu	hg19	15	28326852	28326852	+	Missense_Mutation	SNP	C	C	T	rs372901106		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	OCA2,NS,carcinoma,0,1	OCA2	NM_000275	exon2	c.G169A	p.G57R	TCTGCCCGGCAGC	.	142.0	7.0	144.0	1.0	.	173	.	.	Atlas-SNP
CSPG4	1464	hgsc.bcm.edu	hg19	15	75980591	75980591	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	CSPG4	NM_001897	exon3	c.C2815A	p.R939R	GGGGCCGCTCCAT	.	45.0	14.0	59.0	0.0	.	175	.	.	Atlas-SNP
SCAPER	49855	hgsc.bcm.edu	hg19	15	77154760	77154760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	SCAPER,colon,carcinoma,0,1	SCAPER	NM_020843	exon2	c.G121T	p.D41Y	TACCATCATCATC	.	58.0	17.0	57.0	0.0	.	160	.	.	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	hg19	15	90344728	90344728	+	Silent	SNP	G	G	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	ANPEP	NM_001150	exon11	c.C1680G	p.T560T	GGAAAGGGTCCCC	.	131.0	39.0	138.0	0.0	.	124	.	.	Atlas-SNP
MPG	4350	hgsc.bcm.edu	hg19	16	129606	129606	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MPG	NM_002434	exon3	c.C222G	p.I74M	CAGCATCTATTTC	.	97.0	27.0	105.0	0.0	.	26	.	.	Atlas-SNP
CLN3	1201	hgsc.bcm.edu	hg19	16	28495439	28495439	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	CLN3	NM_001042432	exon10	c.C678T	p.S226S	GAAATAGCTAGGA	.	44.0	13.0	49.0	0.0	.	33	.	.	Atlas-SNP
SLC7A6OS	84138	hgsc.bcm.edu	hg19	16	68335257	68335257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	SLC7A6OS	NM_032178	exon5	c.A851T	p.Q284L	ATCCGCTGTCTGC	.	43.0	11.0	49.0	0.0	.	22	.	.	Atlas-SNP
MVD	4597	hgsc.bcm.edu	hg19	16	88721205	88721205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MVD	NM_002461	exon8	c.C908T	p.T303I	TCAAAGGTGTACG	.	74.0	26.0	66.0	0.0	.	27	.	.	Atlas-SNP
DVL2	1856	hgsc.bcm.edu	hg19	17	7137429	7137429	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	DVL2	NM_004422	exon1	c.G153T	p.A51A	GGCGCCCGCGGGC	.	37.0	22.0	81.0	0.0	.	49	.	.	Atlas-SNP
MRPL45	84311	hgsc.bcm.edu	hg19	17	36476595	36476595	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MRPL45	NM_032351	exon6	c.A604T	p.M202L	TCAAGTATGATGA	.	69.0	16.0	58.0	0.0	.	27	.	.	Atlas-SNP
ACBD4	79777	hgsc.bcm.edu	hg19	17	43213538	43213538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	ACBD4	NM_001135707	exon2	c.G27T	p.E9D	CCCAGAGCCCGAC	.	84.0	14.0	54.0	0.0	.	51	.	.	Atlas-SNP
CACNA1G	8913	hgsc.bcm.edu	hg19	17	48667952	48667952	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	CACNA1G	NM_001256360	exon10	c.A2422T	p.N808Y	CCCTACAACATCT	.	65.0	36.0	45.0	0.0	.	659	.	.	Atlas-SNP
INTS2	57508	hgsc.bcm.edu	hg19	17	59989028	59989028	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	INTS2	NM_020748	exon7	c.T831C	p.L277L	CACACCAAGGCCT	.	302.0	156.0	221.0	0.0	.	89	.	.	Atlas-SNP
SCN4A	6329	hgsc.bcm.edu	hg19	17	62034767	62034767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	SCN4A,colon,carcinoma,0,1	SCN4A	NM_000334	exon13	c.G2131A	p.V711M	TGAACACGATGAT	.	117.0	31.0	71.0	0.0	.	205	.	.	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	hg19	17	78247203	78247203	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	RNF213	NM_001256071	exon3	c.A261C	p.E87D	CCAAGAAGTGAGT	.	52.0	15.0	62.0	0.0	.	766	.	.	Atlas-SNP
MOCOS	55034	hgsc.bcm.edu	hg19	18	33795576	33795576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MOCOS	NM_017947	exon8	c.T1433C	p.V478A	ATGATGTCCAGGC	.	56.0	28.0	56.0	0.0	.	84	.	.	Atlas-SNP
MOCOS	55034	hgsc.bcm.edu	hg19	18	33840138	33840138	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MOCOS	NM_017947	exon13	c.G2409A	p.Q803Q	TTTCCAGGTAAGT	.	106.0	42.0	119.0	0.0	.	84	.	.	Atlas-SNP
PIGN	23556	hgsc.bcm.edu	hg19	18	59815546	59815546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	PIGN	NM_176787	exon8	c.A575G	p.N192S	GACTGGTTGTTTC	.	473.0	141.0	518.0	0.0	.	62	.	.	Atlas-SNP
KANK2	25959	hgsc.bcm.edu	hg19	19	11286587	11286587	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	KANK2	NM_015493	exon6	c.G1863A	p.E621E	CTCCCGCTCTGTG	.	78.0	31.0	58.0	0.0	.	47	.	.	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	hg19	19	11560181	11560181	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	PRKCSH	NM_002743	exon17	c.A1541C	p.E514A	GCCCGGAGCCACC	.	78.0	22.0	65.0	0.0	.	55	.	.	Atlas-SNP
GMIP	51291	hgsc.bcm.edu	hg19	19	19753423	19753423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	GMIP	NM_016573	exon2	c.C25T	p.P9S	CTGGGGGGAGTCC	.	79.0	29.0	69.0	0.0	.	55	.	.	Atlas-SNP
ZNF729	100287226	hgsc.bcm.edu	hg19	19	22499902	22499902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	ZNF729	NM_001242680	exon4	c.C3683T	p.P1228L	GCAATCCTCACAC	.	26.0	7.0	19.0	0.0	.	78	.	.	Atlas-SNP
CEACAM20	125931	hgsc.bcm.edu	hg19	19	45026913	45026913	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	CEACAM20	NM_001102600	exon4	c.G501A	p.L167L	AGACTCCAATTTG	.	89.0	28.0	72.0	0.0	.	31	.	.	Atlas-SNP
NR1H2	7376	hgsc.bcm.edu	hg19	19	50885832	50885832	+	Silent	SNP	G	G	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	NR1H2	NM_007121	exon10	c.G1356C	p.L452L	TCTGCTGTCGGAG	.	33.0	12.0	30.0	0.0	.	47	.	.	Atlas-SNP
NLRP4	147945	hgsc.bcm.edu	hg19	19	56379080	56379080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	NLRP4_ENST00000301295,NS,neuroblastoma,0,1	NLRP4	NM_134444	exon6	c.T2192C	p.V731A	GGCTGGTAAATTG	.	55.0	19.0	50.0	0.0	.	331	.	.	Atlas-SNP
VN1R1	57191	hgsc.bcm.edu	hg19	19	57967008	57967008	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	VN1R1	NM_020633	exon1	c.T847G	p.F283V	AAACAAAAAAGGA	.	87.0	33.0	92.0	0.0	.	48	.	.	Atlas-SNP
FASTKD5	60493	hgsc.bcm.edu	hg19	20	3128547	3128547	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	FASTKD5	NM_021826	exon2	c.T1170A	p.V390V	ACCTTGAACTCCC	.	194.0	57.0	194.0	0.0	.	63	.	.	Atlas-SNP
SPATA25	128497	hgsc.bcm.edu	hg19	20	44515576	44515576	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	.	NM_080608	exon2	c.A264C	p.R88R	GCAGTTTCGGCTG	.	43.0	15.0	34.0	0.0	.	.	.	.	Atlas-SNP
MMP9	4318	hgsc.bcm.edu	hg19	20	44642394	44642394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MMP9	NM_004994	exon10	c.T1709C	p.V570A	ACTCGGTCTTTGA	.	103.0	35.0	114.0	0.0	.	84	.	.	Atlas-SNP
TMPRSS3	64699	hgsc.bcm.edu	hg19	21	43805592	43805592	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	TMPRSS3	NM_001256317	exon6	c.G498A	p.R166R	CTCCTCCCGGAAC	.	99.0	34.0	92.0	0.0	.	40	.	.	Atlas-SNP
TBX1	6899	hgsc.bcm.edu	hg19	22	19748651	19748651	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	TBX1	NM_080647	exon3	c.C258A	p.P86P	CGAGCCCGAGGGC	.	172.0	63.0	231.0	0.0	.	62	.	.	Atlas-SNP
PPP2R3B	28227	hgsc.bcm.edu	hg19	X	301663	301663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	PPP2R3B	NM_013239	exon10	c.G1188T	p.W396C	GCGGAACCAGTAC	.	80.0	33.0	131.0	0.0	.	43	.	.	Atlas-SNP
USP9X	8239	hgsc.bcm.edu	hg19	X	41075386	41075386	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	USP9X	NM_001039591	exon35	c.G5566T	p.E1856X	GAAAGTGAGACAG	.	174.0	130.0	197.0	0.0	.	385	.	.	Atlas-SNP
CFP	5199	hgsc.bcm.edu	hg19	X	47486303	47486303	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	CFP	NM_001145252	exon6	c.C809G	p.P270R	GTCACAGGGCAGG	.	61.0	37.0	84.0	0.0	.	43	.	.	Atlas-SNP
SLC6A14	11254	hgsc.bcm.edu	hg19	X	115590099	115590099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	SLC6A14	NM_007231	exon14	c.G1907A	p.S636N	CTGTTAGTGGCAG	.	292.0	200.0	355.0	0.0	.	56	.	.	Atlas-SNP
ZCCHC12	170261	hgsc.bcm.edu	hg19	X	117959625	117959625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	ZCCHC12	NM_173798	exon4	c.G418T	p.A140S	CTACAAGCTCAAG	.	69.0	7.0	106.0	0.0	.	60	.	.	Atlas-SNP
ZCCHC12	170261	hgsc.bcm.edu	hg19	X	117959626	117959626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	ZCCHC12	NM_173798	exon4	c.C419T	p.A140V	TACAAGCTCAAGG	.	69.0	7.0	106.0	0.0	.	60	.	.	Atlas-SNP
SOX3	6658	hgsc.bcm.edu	hg19	X	139586656	139586656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	SOX3	NM_005634	exon1	c.C570A	p.D190E	GGCCTCGTCGATG	.	294.0	204.0	351.0	2.0	.	44	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90411385	90411385	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MDN1	NM_014611	exon55	c.8320delG	p.V2774fs	.	.	102.0	46.0	92.0	0.0	.	478	.	.	Atlas-INDEL
DVL1	1855	hgsc.bcm.edu	hg19	1	1274773	1274775	+	In_Frame_Del	DEL	CGT	CGT	-	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	CGT	CGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	DVL1	NM_004421	exon11	c.1100_1102del	p.367_368del	.	.	103.0	38.0	165.0	0.0	.	36	.	.	Atlas-INDEL
OR5K4	403278	hgsc.bcm.edu	hg19	3	98073346	98073350	+	Frame_Shift_Del	DEL	TCTTA	TCTTA	-	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	TCTTA	TCTTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	OR5K4	NM_001005517	exon1	c.648_652del	p.216_218del	.	.	81.0	26.0	98.0	0.0	.	75	.	.	Atlas-INDEL
SECISBP2L	9728	hgsc.bcm.edu	hg19	15	49284718	49284719	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	SECISBP2L	NM_001193489	exon18	c.3029_3030del	p.1010_1010del	.	.	88.0	36.0	86.0	0.0	.	118	.	.	Atlas-INDEL
NPHP3	27031	hgsc.bcm.edu	hg19	3	132400798	132400798	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	NPHP3	NM_153240	exon27	c.3950delC	p.T1317fs	.	.	143.0	32.0	122.0	0.0	.	110	.	.	Atlas-INDEL
MAML3	55534	hgsc.bcm.edu	hg19	4	140811058	140811069	+	In_Frame_Del	DEL	TGCTGTTGCTGC	TGCTGTTGCTGC	-	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	TGCTGTTGCTGC	TGCTGTTGCTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	MAML3	NM_018717	exon3	c.1513_1521del	p.505_507del	.	.	71.0	10.0	63.0	0.0	.	192	.	.	Atlas-INDEL
CLASRP	11129	hgsc.bcm.edu	hg19	19	45567295	45567300	+	In_Frame_Del	DEL	TCCCGC	TCCCGC	-	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	TCCCGC	TCCCGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	CLASRP	NM_007056	exon12	c.930_935del	p.310_312del	.	.	77.0	12.0	83.0	0.0	.	44	.	.	Atlas-INDEL
FAP	2191	hgsc.bcm.edu	hg19	2	163045653	163045655	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	FAP	NM_004460	exon19	c.1578_1580del	p.526_527del	.	.	313.0	98.0	320.0	0.0	.	122	.	.	Atlas-INDEL
RAB8A	4218	hgsc.bcm.edu	hg19	19	16236349	16236350	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	RAB8A	NM_005370	exon4	c.316_317insT	p.I106fs	.	.	59.0	18.0	74.0	0.0	.	19	.	.	Atlas-INDEL
NR2C1	7181	hgsc.bcm.edu	hg19	12	95456409	95456413	+	Frame_Shift_Del	DEL	GAGTA	GAGTA	-	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	GAGTA	GAGTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	NR2C1	NM_001032287	exon3	c.157_161del	p.53_54del	.	.	69.0	22.0	87.0	0.0	.	56	.	.	Atlas-INDEL
NR1H4	9971	hgsc.bcm.edu	hg19	12	100934530	100934539	+	Frame_Shift_Del	DEL	GAGATTTTCA	GAGATTTTCA	-	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	GAGATTTTCA	GAGATTTTCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	NR1H4	NM_001206993	exon7	c.1041_1050del	p.347_350del	.	.	64.0	16.0	87.0	0.0	.	145	.	.	Atlas-INDEL
IL6ST	3572	hgsc.bcm.edu	hg19	5	55259984	55259986	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-DD-AADE-01A-11D-A40R-10	TCGA-DD-AADE-10A-01D-A40U-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0c6e46a4-0a92-4775-9edb-024c9b2fba8d	c6c3ad3c-f886-41dc-8a10-31c20b29d836	.	IL6ST	NM_002184	exon6	c.647_649del	p.216_217del	.	.	135.0	35.0	157.0	0.0	.	75	.	.	Atlas-INDEL