Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PIK3CD 5293 hgsc.bcm.edu hg19 1 9775778 9775778 + Missense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . PIK3CD NM_005026 exon4 c.C321A p.D107E GGGCGACCGCGTG . 203.0 89.0 136.0 0.0 . 86 . . Atlas-SNP EPB41 2035 hgsc.bcm.edu hg19 1 29391656 29391656 + Missense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . EPB41 NM_001166005 exon16 c.C2170A p.P724T CAAATCCCCACAG . 171.0 66.0 115.0 0.0 . 118 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34204803 34204803 + Missense_Mutation SNP G G T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . CSMD2 NM_052896 exon15 c.C2186A p.T729N GTGATGGTCTCTG . 95.0 35.0 83.0 0.0 . 946 . . Atlas-SNP CYP4A22 284541 hgsc.bcm.edu hg19 1 47606518 47606518 + Missense_Mutation SNP T T G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . CYP4A22 NM_001010969 exon2 c.T262G p.Y88D TGTCCTTATTGGA . 138.0 49.0 70.0 0.0 . 60 . . Atlas-SNP DOCK7 85440 hgsc.bcm.edu hg19 1 62953084 62953084 + Splice_Site SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 DOCK7,NS,carcinoma,0,1 DOCK7 NM_033407 exon43 c.5401-1G>T . AGTACTCTGTATA . 274.0 15.0 190.0 0.0 . 184 . . Atlas-SNP ANGPTL3 27329 hgsc.bcm.edu hg19 1 63070335 63070335 + Silent SNP A A C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ANGPTL3 NM_014495 exon7 c.C1230C p.T410T TGGAGAAAACAAC . 443.0 165.0 369.0 1.0 . 42 . . Atlas-SNP ANGPTL3 27329 hgsc.bcm.edu hg19 1 63070357 63070357 + Silent SNP A A G rs4145257 byhapmap;alternate_allele TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ANGPTL3 NM_014495 exon7 c.G1252G p.E418E AAATATAACAAAC . 451.0 159.0 371.0 0.0 . 42 . A|0.998;T|0.002 Atlas-SNP ANGPTL3 27329 hgsc.bcm.edu hg19 1 63070362 63070362 + Silent SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ANGPTL3 NM_014495 exon7 c.G1257G p.E419E TAACAAACCAAGA . 455.0 164.0 369.0 1.0 . 42 . . Atlas-SNP ANGPTL3 27329 hgsc.bcm.edu hg19 1 63070371 63070371 + Missense_Mutation SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ANGPTL3 NM_014495 exon7 c.T1266G p.I422M AAGAGCAAAATCT . 460.0 173.0 369.0 0.0 . 42 . . Atlas-SNP MIER1 57708 hgsc.bcm.edu hg19 1 67436507 67436507 + Missense_Mutation SNP T T A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . MIER1 NM_001077700 exon9 c.T789A p.D263E TGATGATCAGCTC . 245.0 102.0 203.0 0.0 . 86 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152280666 152280666 + Silent SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . FLG NM_002016 exon3 c.G6696T p.G2232G CCTGGGCCCTGAT . 150.0 49.0 115.0 0.0 . 900 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152280667 152280667 + Missense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . FLG NM_002016 exon3 c.G6695T p.G2232V CTGGGCCCTGATG . 150.0 48.0 117.0 0.0 . 900 . . Atlas-SNP NUP210L 91181 hgsc.bcm.edu hg19 1 154033101 154033101 + Missense_Mutation SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . NUP210L NM_001159484 exon20 c.T2765C p.V922A CCTTCCACAAGGC . 109.0 37.0 75.0 0.0 . 181 . . Atlas-SNP KCNN3 3782 hgsc.bcm.edu hg19 1 154842234 154842234 + Missense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . KCNN3 NM_001204087 exon1 c.G207T p.Q69H CTGCTGCTGCTGC . 77.0 5.0 56.0 0.0 . 141 . . Atlas-SNP KCNN3 3782 hgsc.bcm.edu hg19 1 154842235 154842235 + Missense_Mutation SNP T T A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . KCNN3 NM_001204087 exon1 c.A206T p.Q69L TGCTGCTGCTGCT . 76.0 5.0 58.0 0.0 . 141 . . Atlas-SNP OR10Z1 128368 hgsc.bcm.edu hg19 1 158576492 158576492 + Silent SNP G G T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . OR10Z1 NM_001004478 exon1 c.G264T p.G88G TGGGGGGGACCAG . 83.0 33.0 61.0 0.0 . 99 . . Atlas-SNP FMO3 2328 hgsc.bcm.edu hg19 1 171083272 171083272 + Missense_Mutation SNP T T C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . FMO3 NM_006894 exon7 c.T953C p.I318T GGACCATATTTGA . 90.0 33.0 57.0 0.0 . 73 . . Atlas-SNP FMO3 2328 hgsc.bcm.edu hg19 1 171083276 171083276 + Missense_Mutation SNP T T G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . FMO3 NM_006894 exon7 c.T957G p.F319L CATATTTGAGGGC . 89.0 32.0 56.0 0.0 . 73 . . Atlas-SNP MYOG 4656 hgsc.bcm.edu hg19 1 203055032 203055032 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . MYOG NM_002479 exon1 c.G58T p.E20X AGTTTTCCCCATC . 161.0 61.0 104.0 0.0 . 28 . . Atlas-SNP MARC1 64757 hgsc.bcm.edu hg19 1 220970004 220970004 + Missense_Mutation SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . . NM_022746 exon3 c.G469A p.E157K GAGATAGAGGGCA . 126.0 45.0 86.0 0.0 . . . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228556439 228556439 + Missense_Mutation SNP T T C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . OBSCN NM_001271223 exon100 c.T22655C p.M7552T TCCTGATGGTGCA . 99.0 37.0 68.0 0.0 . 2142 . . Atlas-SNP OR2L2 26246 hgsc.bcm.edu hg19 1 248202072 248202072 + Missense_Mutation SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . OR2L2 NM_001004686 exon1 c.G503A p.C168Y CATATTGCAAGTC . 68.0 27.0 58.0 0.0 . 115 . . Atlas-SNP CTNNA2 1496 hgsc.bcm.edu hg19 2 80101354 80101354 + Missense_Mutation SNP A A T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . CTNNA2 NM_001164883 exon6 c.A738T p.Q246H CAAACAAGTCCAG . 99.0 11.0 82.0 0.0 . 462 . . Atlas-SNP LRRTM1 347730 hgsc.bcm.edu hg19 2 80529914 80529914 + Missense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . LRRTM1 NM_178839 exon2 c.G1031T p.S344I TCCGGGCTGGCGC . 133.0 38.0 128.0 0.0 . 251 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84880999 84880999 + Splice_Site SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . DNAH6 NM_001370 exon34 c.5634+1G>A . TTTGAGGTAAGTG . 57.0 23.0 54.0 0.0 . 194 . . Atlas-SNP CNTNAP5 129684 hgsc.bcm.edu hg19 2 125530441 125530441 + Missense_Mutation SNP C C T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . CNTNAP5 NM_130773 exon17 c.C2596T p.P866S CAGTCTCCTTCTC . 119.0 15.0 92.0 0.0 . 405 . . Atlas-SNP AMER3 205147 hgsc.bcm.edu hg19 2 131520209 131520209 + Silent SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 FAM123C,NS,carcinoma,0,1 . NM_152698 exon2 c.G564A p.G188G CCCAGGGGACCCG . 58.0 21.0 55.0 0.0 . . . . Atlas-SNP MAP3K19 80122 hgsc.bcm.edu hg19 2 135743849 135743849 + Missense_Mutation SNP T T C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . . NM_025052 exon7 c.A2593G p.N865D ACTTGTTAGAATT . 95.0 23.0 71.0 0.0 . . . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168107365 168107365 + Missense_Mutation SNP C C T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 XIRP2,NS,carcinoma,0,1 XIRP2 NM_152381 exon9 c.C9463T p.P3155S CCCCCACCAAGAA . 96.0 43.0 113.0 0.0 . 914 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179434324 179434324 + Missense_Mutation SNP A A T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . TTN NM_001267550 exon326 c.T76535A p.L25512H AGGTCAAGATCAA . 157.0 88.0 141.0 0.0 . 18412 . . Atlas-SNP IDH1 3417 hgsc.bcm.edu hg19 2 209110051 209110051 + Missense_Mutation SNP T T G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . IDH1 NM_005896 exon5 c.A512C p.N171T TCAAAGTTATGTA . 113.0 28.0 83.0 0.0 . 6310 . . Atlas-SNP ANKZF1 55139 hgsc.bcm.edu hg19 2 220096992 220096992 + Missense_Mutation SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ANKZF1 NM_001042410 exon4 c.A272G p.Y91C AACATTATAAGCT . 112.0 61.0 112.0 0.0 . 45 . . Atlas-SNP STK11IP 114790 hgsc.bcm.edu hg19 2 220471465 220471465 + Missense_Mutation SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . STK11IP NM_052902 exon12 c.G1052A p.G351D CCATGGGCCCACC . 45.0 15.0 47.0 0.0 . 152 . . Atlas-SNP TCAIM 285343 hgsc.bcm.edu hg19 3 44434442 44434442 + Missense_Mutation SNP C C G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . . NM_173826 exon6 c.C668G p.S223C AACTGTCTCATCA . 381.0 126.0 302.0 0.0 . . . . Atlas-SNP PLXNB1 5364 hgsc.bcm.edu hg19 3 48463572 48463572 + Missense_Mutation SNP A A T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . PLXNB1 NM_001130082 exon6 c.T1462A p.C488S ATGCACAGTCCAG . 92.0 34.0 60.0 0.0 . 150 . . Atlas-SNP GPR156 165829 hgsc.bcm.edu hg19 3 119911830 119911830 + Nonsense_Mutation SNP G G A rs138857726 TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . GPR156 NM_001168271 exon4 c.C430T p.R144X AGAGTCGCCAGCT . 79.0 10.0 50.0 0.0 . 85 . G|1.000;A|0.000 Atlas-SNP POLQ 10721 hgsc.bcm.edu hg19 3 121168168 121168168 + Missense_Mutation SNP A A T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . POLQ NM_199420 exon26 c.T7258A p.Y2420N CTGTGTATCTGGA . 159.0 72.0 116.0 0.0 . 273 . . Atlas-SNP KPNA1 3836 hgsc.bcm.edu hg19 3 122160952 122160952 + Missense_Mutation SNP T T C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . KPNA1 NM_002264 exon10 c.A929G p.Y310C ACTTTATAATCAT . 424.0 170.0 315.0 0.0 . 42 . . Atlas-SNP PARP14 54625 hgsc.bcm.edu hg19 3 122447347 122447347 + Missense_Mutation SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . PARP14 NM_017554 exon17 c.A5309G p.Y1770C ACCTGTATGACAC . 137.0 59.0 76.0 0.0 . 242 . . Atlas-SNP SEMA5B 54437 hgsc.bcm.edu hg19 3 122658315 122658315 + Missense_Mutation SNP T T C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SEMA5B NM_001256347 exon5 c.A593G p.N198S AGGTAGTTCCTGT . 89.0 31.0 73.0 0.0 . 303 . . Atlas-SNP ATP11B 23200 hgsc.bcm.edu hg19 3 182554178 182554178 + Missense_Mutation SNP T T A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ATP11B NM_014616 exon6 c.T472A p.L158M GCAGACTTGGTGC . 113.0 39.0 89.0 0.0 . 115 . . Atlas-SNP VWA5B2 90113 hgsc.bcm.edu hg19 3 183955168 183955168 + Missense_Mutation SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . VWA5B2 NM_138345 exon11 c.G1688A p.R563K TCTTCAGGGTGGA . 71.0 37.0 41.0 0.0 . 47 . . Atlas-SNP ZNF141 7700 hgsc.bcm.edu hg19 4 366828 366828 + Missense_Mutation SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ZNF141 NM_003441 exon4 c.G602A p.C201Y ACACTTGTGAAGA . 126.0 56.0 76.0 0.0 . 48 . . Atlas-SNP SLIT2 9353 hgsc.bcm.edu hg19 4 20618809 20618809 + Missense_Mutation SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SLIT2 NM_004787 exon35 c.G4124A p.C1375Y ACCCTTGCCTTGG . 152.0 63.0 97.0 0.0 . 290 . . Atlas-SNP SLIT2 9353 hgsc.bcm.edu hg19 4 20618810 20618810 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SLIT2 NM_004787 exon35 c.C4125A p.C1375X CCCTTGCCTTGGA . 155.0 65.0 99.0 0.0 . 290 . . Atlas-SNP BMP3 651 hgsc.bcm.edu hg19 4 81952752 81952752 + Missense_Mutation SNP C C T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . BMP3 NM_001201 exon1 c.C314T p.A105V CAGCAGCAGGTGA . 36.0 21.0 58.0 0.0 . 59 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13829748 13829748 + Silent SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . DNAH5 NM_001369 exon38 c.C6315T p.A2105A CATCATGGCCACT . 122.0 63.0 80.0 0.0 . 868 . . Atlas-SNP PDZD2 23037 hgsc.bcm.edu hg19 5 31799600 31799600 + Missense_Mutation SNP C C G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . PDZD2 NM_178140 exon1 c.C245G p.T82S CAGAGACTGTGGG . 150.0 62.0 104.0 0.0 . 306 . . Atlas-SNP PCDHA9 9752 hgsc.bcm.edu hg19 5 140229700 140229700 + Silent SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 PCDHA9_ENST00000532602,NS,carcinoma,0,2 PCDHA9 NM_031857 exon1 c.G1620A p.A540A CGACGCGGGCGTG . 87.0 31.0 63.0 0.0 . 373 . . Atlas-SNP FAT2 2196 hgsc.bcm.edu hg19 5 150923055 150923055 + Silent SNP G G T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . FAT2 NM_001447 exon9 c.C7633A p.R2545R TTTCCCGATCCAG . 77.0 24.0 63.0 0.0 . 465 . . Atlas-SNP PWWP2A 114825 hgsc.bcm.edu hg19 5 159519506 159519506 + Missense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . PWWP2A NM_001130864 exon2 c.G2151T p.Q717H GCGTGACTGGAAG . 97.0 4.0 67.0 0.0 . 64 . . Atlas-SNP C5orf45 51149 hgsc.bcm.edu hg19 5 179264710 179264710 + Missense_Mutation SNP T T G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . C5orf45 NM_016175 exon7 c.A713C p.K238T GAACTTTTTCTAG . 90.0 35.0 87.0 0.0 . 23 . . Atlas-SNP OR2B3 442184 hgsc.bcm.edu hg19 6 29054417 29054417 + Silent SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . OR2B3 NM_001005226 exon1 c.T609C p.S203S TAGTACACTAAAG . 149.0 72.0 104.0 0.0 . 44 . . Atlas-SNP COL11A2 1302 hgsc.bcm.edu hg19 6 33157128 33157128 + Silent SNP C C T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . COL11A2 NM_080681 exon2 c.G201A p.Q67Q ACTGAGCTGGGCA . 110.0 5.0 74.0 0.0 . 124 . . Atlas-SNP MUT 4594 hgsc.bcm.edu hg19 6 49416564 49416564 + Missense_Mutation SNP T T C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . MUT NM_000255 exon7 c.A1409G p.E470G GCACATTCTTCAA . 184.0 81.0 126.0 0.0 . 70 . . Atlas-SNP MUT 4594 hgsc.bcm.edu hg19 6 49416604 49416604 + Nonsense_Mutation SNP T T A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . MUT NM_000255 exon7 c.A1369T p.K457X CAGCTTTGGCCAT . 173.0 76.0 107.0 0.0 . 70 . . Atlas-SNP KHDRBS2 202559 hgsc.bcm.edu hg19 6 62442656 62442656 + Missense_Mutation SNP C C T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . KHDRBS2 NM_152688 exon7 c.G824A p.G275D CCGTAGCCATCAT . 132.0 31.0 91.0 0.0 . 103 . . Atlas-SNP MAP3K4 4216 hgsc.bcm.edu hg19 6 161455352 161455352 + Missense_Mutation SNP T T A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . MAP3K4 NM_006724 exon2 c.T214A p.S72T GACTTCTCCGATG . 79.0 21.0 103.0 0.0 . 364 . . Atlas-SNP ABCB5 340273 hgsc.bcm.edu hg19 7 20698136 20698136 + Missense_Mutation SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ABCB5 NM_001163941 exon14 c.A1544G p.N515S AATTTAATACATT . 46.0 25.0 39.0 0.0 . 357 . . Atlas-SNP HOXA7 3204 hgsc.bcm.edu hg19 7 27195946 27195946 + Silent SNP G G C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . HOXA7 NM_006896 exon1 c.C219G p.G73G GTCGGCGCCCAGG . 227.0 67.0 195.0 0.0 . 34 . . Atlas-SNP SEMA3A 10371 hgsc.bcm.edu hg19 7 83640603 83640603 + Missense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 SEMA3A,right_upper_lobe,carcinoma,0,1 SEMA3A NM_006080 exon8 c.G821T p.G274V TGCCCTCCAAAGT . 115.0 52.0 84.0 0.0 . 121 . . Atlas-SNP SEMA3A 10371 hgsc.bcm.edu hg19 7 83640604 83640604 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SEMA3A NM_006080 exon8 c.G820T p.G274X GCCCTCCAAAGTC . 115.0 52.0 83.0 0.0 . 121 . . Atlas-SNP ORC5 5001 hgsc.bcm.edu hg19 7 103808951 103808951 + Missense_Mutation SNP T T C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ORC5 NM_002553 exon9 c.A847G p.K283E CATCTTTCTGTAG . 79.0 45.0 27.0 0.0 . 48 . . Atlas-SNP ORC5 5001 hgsc.bcm.edu hg19 7 103808952 103808952 + Missense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ORC5 NM_002553 exon9 c.G846T p.Q282H ATCTTTCTGTAGC . 75.0 44.0 28.0 0.0 . 48 . . Atlas-SNP PPP1R3A 5506 hgsc.bcm.edu hg19 7 113518118 113518118 + Missense_Mutation SNP G G T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . PPP1R3A NM_002711 exon4 c.C3029A p.P1010Q ATCATTGGCCCTA . 126.0 78.0 51.0 0.0 . 317 . . Atlas-SNP ESYT2 57488 hgsc.bcm.edu hg19 7 158586392 158586392 + Missense_Mutation SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ESYT2 NM_020728 exon4 c.T677C p.V226A GTGTATACCTTAA . 61.0 33.0 31.0 0.0 . 70 . . Atlas-SNP MBOAT4 619373 hgsc.bcm.edu hg19 8 29989500 29989500 + Missense_Mutation SNP G G T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . MBOAT4 NM_001100916 exon3 c.C1267A p.L423M AAAGCAGAATACA . 209.0 76.0 161.0 0.0 . 31 . . Atlas-SNP FGFR1 2260 hgsc.bcm.edu hg19 8 38273520 38273520 + Missense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . FGFR1 NM_001174067 exon14 c.G1815T p.Q605H CCGGGCCTGCAGG . 47.0 15.0 37.0 0.0 . 284 . . Atlas-SNP SAMD12 401474 hgsc.bcm.edu hg19 8 119391802 119391802 + Nonsense_Mutation SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SAMD12 NM_207506 exon4 c.C460T p.Q154X TACCTTGTGTGAG . 145.0 20.0 80.0 0.0 . 24 . . Atlas-SNP ADCY8 114 hgsc.bcm.edu hg19 8 131896827 131896827 + Missense_Mutation SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ADCY8 NM_001115 exon8 c.T2092C p.S698P GGCTGGAGTCTTT . 54.0 17.0 46.0 0.0 . 291 . . Atlas-SNP SCRIB 23513 hgsc.bcm.edu hg19 8 144875222 144875222 + Missense_Mutation SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SCRIB NM_015356 exon29 c.C3941T p.P1314L TTGGCGGGCAGCT . 92.0 33.0 70.0 0.0 . 192 . . Atlas-SNP SMARCA2 6595 hgsc.bcm.edu hg19 9 2123796 2123796 + Silent SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SMARCA2 NM_139045 exon27 c.G3840A p.L1280L TGAGCTGCCCTCC . 112.0 8.0 87.0 0.0 . 313 . . Atlas-SNP SPAG8 26206 hgsc.bcm.edu hg19 9 35811575 35811575 + Silent SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SPAG8 NM_001039592 exon2 c.C468T p.G156G GCCAGAGCCATGG . 65.0 28.0 63.0 0.0 . 67 . . Atlas-SNP TRIM32 22954 hgsc.bcm.edu hg19 9 119461915 119461915 + Missense_Mutation SNP G G T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . TRIM32 NM_012210 exon2 c.G1894T p.V632F CTGCTGGTCTTGG . 98.0 46.0 72.0 0.0 . 67 . . Atlas-SNP WDFY4 57705 hgsc.bcm.edu hg19 10 49917835 49917835 + Missense_Mutation SNP A A C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . WDFY4 NM_020945 exon2 c.A58C p.N20H TCCAAAAATGAAG . 74.0 36.0 75.0 0.0 . 205 . . Atlas-SNP LBX1 10660 hgsc.bcm.edu hg19 10 102988325 102988325 + Missense_Mutation SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . LBX1 NM_006562 exon1 c.C248T p.S83L AGCGGCGAGGTCT . 36.0 27.0 41.0 0.0 . 18 . . Atlas-SNP PPRC1 23082 hgsc.bcm.edu hg19 10 103898443 103898443 + Missense_Mutation SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . PPRC1 NM_015062 exon3 c.A410G p.N137S TGGACAATGCAGA . 53.0 33.0 60.0 0.0 . 151 . . Atlas-SNP C10orf118 55088 hgsc.bcm.edu hg19 10 115922915 115922915 + Missense_Mutation SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . C10orf118 NM_018017 exon2 c.T113C p.L38S TTTTCTAATTTGC . 70.0 45.0 56.0 0.0 . 70 . . Atlas-SNP RASSF10 644943 hgsc.bcm.edu hg19 11 13032049 13032049 + Missense_Mutation SNP C C G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . . NM_001080521 exon1 c.C926G p.P309R CGCCCCCTCTAGC . 102.0 18.0 80.0 0.0 . . . . Atlas-SNP KIAA1549L 25758 hgsc.bcm.edu hg19 11 33689596 33689596 + Missense_Mutation SNP G G T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . . NM_012194 exon20 c.G5446T p.A1816S TCTGACGCTCCCC . 93.0 50.0 72.0 0.0 . . . . Atlas-SNP ZNF408 79797 hgsc.bcm.edu hg19 11 46726573 46726573 + Missense_Mutation SNP G G T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ZNF408 NM_024741 exon5 c.G1323T p.Q441H TGACCAGTGTGGC . 87.0 29.0 66.0 0.0 . 70 . . Atlas-SNP C11orf24 53838 hgsc.bcm.edu hg19 11 68029831 68029831 + Missense_Mutation SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . C11orf24 NM_022338 exon4 c.C632T p.A211V CGTGTGGCCAATG . 128.0 40.0 123.0 0.0 . 35 . . Atlas-SNP C11orf24 53838 hgsc.bcm.edu hg19 11 68029832 68029832 + Missense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . C11orf24 NM_022338 exon4 c.G631T p.A211S GTGTGGCCAATGT . 127.0 40.0 124.0 0.0 . 35 . . Atlas-SNP DHCR7 1717 hgsc.bcm.edu hg19 11 71146549 71146549 + Missense_Mutation SNP T T C rs375187933 TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . DHCR7 NM_001163817 exon9 c.A1300G p.I434V TGTAGATGATGTA . 86.0 20.0 49.0 0.0 . 98 . . Atlas-SNP SLCO2B1 11309 hgsc.bcm.edu hg19 11 74915600 74915600 + Missense_Mutation SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SLCO2B1 NM_007256 exon14 c.A2105G p.K702R CAGGGAAGAAGCC . 83.0 16.0 57.0 0.0 . 84 . . Atlas-SNP CNTN5 53942 hgsc.bcm.edu hg19 11 99942502 99942502 + Missense_Mutation SNP G G T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . CNTN5 NM_001243270 exon11 c.G1365T p.M455I TGGAATGTATCAG . 128.0 56.0 94.0 0.0 . 324 . . Atlas-SNP COPS7A 50813 hgsc.bcm.edu hg19 12 6837158 6837158 + Missense_Mutation SNP G G T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . COPS7A NM_001164094 exon3 c.G229T p.D77Y TACGCTGACTACT . 59.0 28.0 44.0 0.0 . 26 . . Atlas-SNP METTL20 254013 hgsc.bcm.edu hg19 12 31815050 31815050 + Missense_Mutation SNP A A T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . METTL20 NM_173802 exon2 c.A163T p.T55S GAGAACACTGAAG . 120.0 52.0 102.0 0.0 . 23 . . Atlas-SNP KRT5 3852 hgsc.bcm.edu hg19 12 52911408 52911408 + Missense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . KRT5 NM_000424 exon5 c.G1058T p.S353I GTCCGGCTGCGGT . 54.0 11.0 39.0 0.0 . 88 . . Atlas-SNP CTDSP2 10106 hgsc.bcm.edu hg19 12 58217408 58217408 + Missense_Mutation SNP G G T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . CTDSP2 NM_005730 exon8 c.C793A p.L265I GCCCAAGGCTGGT . 56.0 7.0 36.0 0.0 . 25 . . Atlas-SNP KERA 11081 hgsc.bcm.edu hg19 12 91450006 91450006 + Missense_Mutation SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . KERA NM_007035 exon2 c.T53C p.V18A GACCACACAGTGT . 82.0 5.0 59.0 0.0 . 62 . . Atlas-SNP PRDM4 11108 hgsc.bcm.edu hg19 12 108128174 108128174 + Missense_Mutation SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . PRDM4 NM_012406 exon12 c.T2219C p.L740P TTGGTTAGATAAG . 171.0 75.0 147.0 0.0 . 64 . . Atlas-SNP CCDC63 160762 hgsc.bcm.edu hg19 12 111345151 111345151 + Missense_Mutation SNP C C A rs371014584 alternate_allele TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . CCDC63 NM_152591 exon12 c.C1563A p.D521E CCTGGACCACAGC . 49.0 21.0 40.0 0.0 . 89 . . Atlas-SNP EFHA1 221154 hgsc.bcm.edu hg19 13 22069447 22069447 + Silent SNP C C T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . EFHA1 NM_152726 exon11 c.G1053A p.K351K AGCTCTCTTAAAC . 90.0 24.0 89.0 0.0 . 33 . . Atlas-SNP FLT1 2321 hgsc.bcm.edu hg19 13 28963914 28963914 + Missense_Mutation SNP T T G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . FLT1 NM_001159920 exon13 c.A1988C p.K663T ACAGCCTTTTTGT . 48.0 33.0 45.0 0.0 . 393 . . Atlas-SNP UBL3 5412 hgsc.bcm.edu hg19 13 30341820 30341820 + Missense_Mutation SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 .,1 UBL3 NM_007106 exon4 c.C236T p.P79L CCAAAAGGAAGTT . 70.0 4.0 84.0 0.0 . 13 . . Atlas-SNP CCNA1 8900 hgsc.bcm.edu hg19 13 37007255 37007255 + Missense_Mutation SNP C C G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . CCNA1 NM_003914 exon2 c.C194G p.A65G CCGATGCTTGTCA . 43.0 31.0 78.0 0.0 . 91 . . Atlas-SNP CSNK1A1L 122011 hgsc.bcm.edu hg19 13 37679379 37679379 + Missense_Mutation SNP G G T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 CSNK1A1L,colon,carcinoma,0,2 CSNK1A1L NM_145203 exon1 c.C15A p.S5R GGAGCCGCTGTTG . 64.0 43.0 80.0 0.0 . 69 . . Atlas-SNP EDNRB 1910 hgsc.bcm.edu hg19 13 78475302 78475302 + Missense_Mutation SNP T T C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . EDNRB NM_001201397 exon5 c.A1112G p.Y371C CAGAAATAGAAAC . 97.0 43.0 54.0 0.0 . 172 . . Atlas-SNP MYH7 4625 hgsc.bcm.edu hg19 14 23895186 23895186 + Missense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . MYH7 NM_000257 exon19 c.G2149T p.D717Y GGAAGTCCCCGTA . 89.0 32.0 66.0 0.0 . 349 . . Atlas-SNP ZFYVE26 23503 hgsc.bcm.edu hg19 14 68256275 68256275 + Silent SNP C C T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ZFYVE26 NM_015346 exon16 c.G2796A p.L932L GTTGAGCAGCTTG . 48.0 36.0 51.0 0.0 . 223 . . Atlas-SNP ZFP36L1 677 hgsc.bcm.edu hg19 14 69256756 69256756 + Missense_Mutation SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ZFP36L1 NM_001244701 exon3 c.C718T p.P240S AGCGGGGCCCGTA . 35.0 23.0 60.0 0.0 . 47 . . Atlas-SNP FURIN 5045 hgsc.bcm.edu hg19 15 91424928 91424928 + Silent SNP C C T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . FURIN NM_002569 exon16 c.C2205T p.V735V CCTGGTCCTGCAG . 139.0 61.0 110.0 0.0 . 85 . . Atlas-SNP SEZ6L2 26470 hgsc.bcm.edu hg19 16 29889696 29889696 + Missense_Mutation SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SEZ6L2 NM_001243332 exon10 c.G1624T p.D542Y GCCAGTCGGGAGA . 58.0 49.0 37.0 0.0 . 137 . . Atlas-SNP SRCAP 10847 hgsc.bcm.edu hg19 16 30735749 30735749 + Silent SNP T T C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SRCAP NM_006662 exon25 c.T5004C p.V1668V CCCGGTTCCGTCA . 74.0 57.0 97.0 0.0 . 298 . . Atlas-SNP SETD1A 9739 hgsc.bcm.edu hg19 16 30990708 30990708 + Missense_Mutation SNP C C T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SETD1A NM_014712 exon14 c.C3601T p.R1201W GCTCCCCGGGGCG . 115.0 86.0 103.0 0.0 . 143 . . Atlas-SNP PHKB 5257 hgsc.bcm.edu hg19 16 47497889 47497889 + Missense_Mutation SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 PHKB_ENST00000299167,NS,carcinoma,0,1 PHKB NM_001031835 exon2 c.G40A p.A14T TCTTCCGCTTTCT . 78.0 23.0 73.0 0.0 . 298 . . Atlas-SNP USP10 9100 hgsc.bcm.edu hg19 16 84779047 84779047 + Silent SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . USP10 NM_001272075 exon5 c.A972G p.A324A GAGTGCATCACCT . 63.0 46.0 100.0 0.0 . 51 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578235 7578235 + Missense_Mutation SNP T T C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 TP53_ENST00000545858,temporoparietal,glioma,0,24 TP53 NM_000546 exon6 c.A614G p.Y205C TCCAAATACTCCA . 101.0 70.0 139.0 0.0 . 33396 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11593003 11593003 + Silent SNP C C T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . DNAH9 NM_001372 exon20 c.C3864T p.D1288D CCCTGACTATAAG . 66.0 56.0 91.0 0.0 . 695 . . Atlas-SNP GRN 2896 hgsc.bcm.edu hg19 17 42427830 42427830 + Silent SNP G G A rs373703310 TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . GRN NM_002087 exon6 c.G483A p.R161R AGACAGGGTGCAC . 52.0 16.0 50.0 0.0 . 51 . . Atlas-SNP SMCHD1 23347 hgsc.bcm.edu hg19 18 2763754 2763754 + Silent SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SMCHD1 NM_015295 exon37 c.A4686G p.E1562E ACTTGAATTCCCC . 148.0 58.0 128.0 0.0 . 88 . . Atlas-SNP TCEB3B 51224 hgsc.bcm.edu hg19 18 44560876 44560876 + Missense_Mutation SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . TCEB3B NM_016427 exon1 c.T760C p.C254R CCCCGCATGATTT . 66.0 26.0 56.0 0.0 . 141 . . Atlas-SNP GPR108 56927 hgsc.bcm.edu hg19 19 6730371 6730371 + Silent SNP T T C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . GPR108 NM_001080452 exon18 c.A1584G p.E528E GAGGCCTTCCCGG . 121.0 42.0 96.0 0.0 . 35 . . Atlas-SNP SIN3B 23309 hgsc.bcm.edu hg19 19 16988394 16988394 + Missense_Mutation SNP G G C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SIN3B NM_015260 exon18 c.G2994C p.E998D GACCGAGGGCGCG . 48.0 18.0 43.0 0.0 . 90 . . Atlas-SNP ANKLE1 126549 hgsc.bcm.edu hg19 19 17396553 17396553 + Missense_Mutation SNP G G T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ANKLE1 NM_152363 exon8 c.G1600T p.V534L GGTGTTGTGTCCC . 81.0 28.0 69.0 0.0 . 27 . . Atlas-SNP FXYD1 5348 hgsc.bcm.edu hg19 19 35632088 35632088 + Silent SNP C C T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . FXYD1 NM_005031 exon4 c.C147T p.I49I CTTCATCCTGGGC . 37.0 10.0 30.0 0.0 . 6 . . Atlas-SNP LRFN1 57622 hgsc.bcm.edu hg19 19 39798880 39798880 + Missense_Mutation SNP A A T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . LRFN1 NM_020862 exon2 c.T1709A p.V570D CCCTTGACGCGGC . 123.0 53.0 96.0 0.0 . 59 . . Atlas-SNP SPTBN4 57731 hgsc.bcm.edu hg19 19 41026029 41026029 + Missense_Mutation SNP C C T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SPTBN4 NM_020971 exon16 c.C3625T p.R1209C GATCTACGCCAGG . 38.0 14.0 36.0 0.0 . 213 . . Atlas-SNP CEACAM3 1084 hgsc.bcm.edu hg19 19 42314898 42314898 + Missense_Mutation SNP C C G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . CEACAM3 NM_001815 exon6 c.C656G p.P219R AGGCCCCCCTACC . 101.0 47.0 88.0 0.0 . 37 . . Atlas-SNP SULT2A1 6822 hgsc.bcm.edu hg19 19 48389503 48389503 + Silent SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SULT2A1 NM_003167 exon1 c.T12C p.D4D TAAGAAATCGTCC . 117.0 60.0 98.0 0.0 . 49 . . Atlas-SNP NLRP7 199713 hgsc.bcm.edu hg19 19 55451284 55451284 + Silent SNP C C A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 NLRP7_ENST00000328092,caecum,carcinoma,0,2 NLRP7 NM_001127255 exon4 c.G903T p.T301T GGGCCGCGTGGTG . 89.0 5.0 68.0 0.0 . 411 . . Atlas-SNP ZNF551 90233 hgsc.bcm.edu hg19 19 58199257 58199257 + Silent SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ZNF551 NM_138347 exon3 c.A1614G p.K538K TGGCAAATCTTTT . 88.0 35.0 83.0 0.0 . 65 . . Atlas-SNP CST11 140880 hgsc.bcm.edu hg19 20 23433401 23433401 + Silent SNP T T C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . CST11 NM_130794 exon1 c.A48G p.L16L AGTCAATAGAATG . 121.0 55.0 94.0 0.0 . 27 . . Atlas-SNP C20orf118 140711 hgsc.bcm.edu hg19 20 35507490 35507490 + Missense_Mutation SNP T T A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . C20orf118 NM_080628 exon3 c.T236A p.L79Q GGAGTCTGGTCTT . 84.0 29.0 60.0 0.0 . 21 . . Atlas-SNP SEMG2 6407 hgsc.bcm.edu hg19 20 43850459 43850459 + Silent SNP T T C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . SEMG2 NM_003008 exon2 c.T186C p.S62S AGGCAGTTTTTCT . 264.0 33.0 202.0 0.0 . 92 . . Atlas-SNP ZNF831 128611 hgsc.bcm.edu hg19 20 57767217 57767217 + Silent SNP G G A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ZNF831 NM_178457 exon1 c.G1143A p.P381P GGGCCCGGGGCCA . 107.0 45.0 67.0 0.0 . 287 . . Atlas-SNP CRYBA4 1413 hgsc.bcm.edu hg19 22 27021475 27021475 + Missense_Mutation SNP A A C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . CRYBA4 NM_001886 exon4 c.A189C p.Q63H CTTCCAAGGGCAG . 45.0 19.0 37.0 0.0 . 33 . . Atlas-SNP CXCR3 2833 hgsc.bcm.edu hg19 X 70837372 70837372 + Missense_Mutation SNP T T C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . CXCR3 NM_001142797 exon2 c.A91G p.I31V TTGTGATTGAGTC . 85.0 62.0 47.0 0.0 . 57 . . Atlas-SNP ZNF711 7552 hgsc.bcm.edu hg19 X 84526085 84526085 + Missense_Mutation SNP G G T novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ZNF711 NM_021998 exon9 c.G1537T p.G513C GGGAAGGGTTTTC . 115.0 102.0 93.0 0.0 . 198 . . Atlas-SNP DOCK11 139818 hgsc.bcm.edu hg19 X 117676789 117676789 + Silent SNP A A G novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . DOCK11 NM_144658 exon2 c.A204G p.P68P GTTCCCAATGGAA . 208.0 161.0 141.0 0.0 . 185 . . Atlas-SNP GABRQ 55879 hgsc.bcm.edu hg19 X 151818238 151818238 + Missense_Mutation SNP G G C novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . GABRQ NM_018558 exon6 c.G644C p.W215S TATTCTGGGATGA . 58.0 50.0 42.0 0.0 . 131 . . Atlas-SNP ETNK1 55500 hgsc.bcm.edu hg19 12 22837867 22837901 + Frame_Shift_Del DEL TGCATTAAAAGTGCCTGAGTAAAGAAGAGATTTAA TGCATTAAAAGTGCCTGAGTAAAGAAGAGATTTAA - novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 TGCATTAAAAGTGCCTGAGTAAAGAAGAGATTTAA TGCATTAAAAGTGCCTGAGTAAAGAAGAGATTTAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ETNK1 NM_018638 exon8 c.1337_1381del p.446_453del . . 79.0 14.0 88.0 0.0 . 61 . . Atlas-INDEL FAM120A 23196 hgsc.bcm.edu hg19 9 96278439 96278439 + Frame_Shift_Del DEL C C - novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . FAM120A NM_014612 exon7 c.1305delG p.S435fs . . 359.0 175.0 304.0 0.0 . 105 . . Atlas-INDEL NOSIP 51070 hgsc.bcm.edu hg19 19 50063276 50063291 + Frame_Shift_Del DEL GGGTCCCATAGCCCGA GGGTCCCATAGCCCGA - novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 GGGTCCCATAGCCCGA GGGTCCCATAGCCCGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . NOSIP NM_001270960 exon3 c.77_92del p.26_31del . . 112.0 27.0 92.0 0.0 . 28 . . Atlas-INDEL ATP8A2 51761 hgsc.bcm.edu hg19 13 26594099 26594100 + Frame_Shift_Ins INS - - A novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ATP8A2 NM_016529 exon37 c.3543_3544insA p.T1181fs . . 61.0 16.0 60.0 0.0 . 181 . . Atlas-INDEL TAPBPL 55080 hgsc.bcm.edu hg19 12 6566826 6566838 + Frame_Shift_Del DEL ACTATACAGGACG ACTATACAGGACG - novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 ACTATACAGGACG ACTATACAGGACG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . TAPBPL NM_018009 exon4 c.819_831del p.273_277del . . 111.0 35.0 106.0 0.0 . 21 . . Atlas-INDEL ARHGEF12 23365 hgsc.bcm.edu hg19 11 120319893 120319894 + Frame_Shift_Ins INS - - GGAG novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . ARHGEF12 NM_015313 exon21 c.1813_1814insGGAG p.R605fs . . 124.0 52.0 93.0 0.0 . 133 . . Atlas-INDEL WDR35 57539 hgsc.bcm.edu hg19 2 20173444 20173447 + Frame_Shift_Del DEL CATG CATG - novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 CATG CATG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . WDR35 NM_001006657 exon8 c.760_763del p.254_255del . . 133.0 55.0 149.0 0.0 . 92 . . Atlas-INDEL TMCO6 55374 hgsc.bcm.edu hg19 5 140022524 140022525 + Frame_Shift_Ins INS - - CACAG novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . TMCO6 NM_018502 exon7 c.704_705insCACAG p.S235fs . . 97.0 24.0 61.0 0.0 . 30 . . Atlas-INDEL C5orf45 51149 hgsc.bcm.edu hg19 5 179264714 179264714 + Frame_Shift_Del DEL T T - novel TCGA-DD-AADL-01A-11D-A40R-10 TCGA-DD-AADL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a2a6b995-9bef-41e2-8e57-896039e6579d 12f9780c-620f-4e1c-af89-a3905b81bc11 . C5orf45 NM_016175 exon7 c.710delG p.R237fs . . 92.0 34.0 88.0 0.0 . 23 . . Atlas-INDEL