Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm KIF17 57576 hgsc.bcm.edu hg19 1 21011489 21011489 + Missense_Mutation SNP C C A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . KIF17 NM_001122819 exon10 c.G2044T p.A682S CTAAGGCCACTTC . 151.0 50.0 193.0 0.0 . 130 . . Atlas-SNP DOCK7 85440 hgsc.bcm.edu hg19 1 62923216 62923216 + Missense_Mutation SNP A A C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . DOCK7 NM_001271999 exon48 c.T6340G p.C2114G TGTGGCAGGTGAC . 87.0 31.0 112.0 0.0 . 184 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152277558 152277558 + Silent SNP T T A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . FLG NM_002016 exon3 c.A9804T p.A3268A GCGGTCTGCAGAG . 103.0 41.0 120.0 0.0 . 900 . . Atlas-SNP NOS1AP 9722 hgsc.bcm.edu hg19 1 162302830 162302830 + Missense_Mutation SNP C C A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . NOS1AP NM_014697 exon5 c.C368A p.S123Y ATGATTCCCAAGA . 145.0 27.0 126.0 0.0 . 139 . . Atlas-SNP AXDND1 126859 hgsc.bcm.edu hg19 1 179497542 179497542 + Missense_Mutation SNP T T A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . AXDND1 NM_144696 exon23 c.T2691A p.F897L TCTATTTGAAACA . 102.0 20.0 86.0 0.0 . 142 . . Atlas-SNP FAM5C 339479 hgsc.bcm.edu hg19 1 190195446 190195446 + Missense_Mutation SNP G G T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . FAM5C NM_199051 exon6 c.C727A p.L243I CTTGAAGCCCTTG . 78.0 56.0 77.0 0.0 . 343 . . Atlas-SNP RGS18 64407 hgsc.bcm.edu hg19 1 192127859 192127859 + Missense_Mutation SNP A A G novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . RGS18 NM_130782 exon1 c.A92G p.E31G GAAAAGAAGAAAC . 1014.0 225.0 818.0 0.0 . 54 . . Atlas-SNP TPO 7173 hgsc.bcm.edu hg19 2 1437364 1437364 + Missense_Mutation SNP T T C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . TPO NM_175719 exon4 c.T334C p.S112P CAACAATCACAGC . 226.0 66.0 290.0 0.0 . 224 . . Atlas-SNP MYT1L 23040 hgsc.bcm.edu hg19 2 1844609 1844609 + Silent SNP T T A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . MYT1L NM_015025 exon20 c.A2775T p.S925S GCAACCTGAAAGG . 44.0 13.0 57.0 0.0 . 241 . . Atlas-SNP DTNB 1838 hgsc.bcm.edu hg19 2 25656837 25656837 + Missense_Mutation SNP T T A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . DTNB NM_021907 exon13 c.A1285T p.N429Y CAAAGTTAAAGCT . 100.0 36.0 135.0 0.0 . 43 . . Atlas-SNP SLC8A1 6546 hgsc.bcm.edu hg19 2 40656383 40656383 + Missense_Mutation SNP T T C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c SLC8A1,NS,carcinoma,0,1 SLC8A1 NM_001252624 exon1 c.A1038G p.I346M TAATTCTATTAAT . 113.0 62.0 101.0 1.0 . 221 . . Atlas-SNP PCBP1 5093 hgsc.bcm.edu hg19 2 70314990 70314990 + Missense_Mutation SNP A A C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . PCBP1 NM_006196 exon1 c.A115C p.I39L AAGAGGATCCGCG . 222.0 58.0 169.0 0.0 . 28 . . Atlas-SNP POTEF 728378 hgsc.bcm.edu hg19 2 130832582 130832582 + Missense_Mutation SNP C C A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . POTEF NM_001099771 exon17 c.G2463T p.Q821H CATGATCTGGGTC . 251.0 143.0 196.0 1.0 . 140 . . Atlas-SNP ACVR2A 92 hgsc.bcm.edu hg19 2 148674942 148674942 + Nonsense_Mutation SNP C C T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c ACVR2A,caecum,carcinoma,0,1 ACVR2A NM_001616 exon6 c.C763T p.R255X GAAAAACGAGGCA . 294.0 80.0 265.0 0.0 . 125 . . Atlas-SNP RAD18 56852 hgsc.bcm.edu hg19 3 8988966 8988966 + Silent SNP T T A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . RAD18 NM_020165 exon4 c.A204T p.T68T CGGCTCTGTGACA . 138.0 33.0 136.0 0.0 . 52 . . Atlas-SNP ATP2B2 491 hgsc.bcm.edu hg19 3 10392219 10392219 + Missense_Mutation SNP C C A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . ATP2B2 NM_001001331 exon15 c.G2179T p.V727F TGCGGACCGTGAT . 44.0 27.0 41.0 0.0 . 304 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266124 41266124 + Missense_Mutation SNP A A G rs121913412 bycluster TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c CTNNB1,gallbladder,other,0,1 CTNNB1 NM_001098209 exon3 c.A121G p.T41A GCCACTACCACAG . 167.0 97.0 177.0 0.0 . 4904 . . Atlas-SNP LAMB2 3913 hgsc.bcm.edu hg19 3 49161489 49161489 + Missense_Mutation SNP G G A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . LAMB2 NM_002292 exon24 c.C3469T p.R1157C TGAAGCGGTGACA . 55.0 12.0 43.0 0.0 . 156 . . Atlas-SNP SLC9C1 285335 hgsc.bcm.edu hg19 3 111993747 111993747 + Missense_Mutation SNP A A T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . . NM_183061 exon6 c.T610A p.L204I TACCTAAGGTATG . 286.0 92.0 309.0 0.0 . . . . Atlas-SNP SEC61A1 29927 hgsc.bcm.edu hg19 3 127788431 127788431 + Missense_Mutation SNP A A G novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . SEC61A1 NM_013336 exon12 c.A1357G p.I453V GTCACAATCATCT . 73.0 44.0 88.0 0.0 . 39 . . Atlas-SNP MBD4 8930 hgsc.bcm.edu hg19 3 129150366 129150366 + Missense_Mutation SNP T T A rs370417942 TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . MBD4 NM_003925 exon8 c.A1721T p.H574L TTTTCATGATTTT . 57.0 6.0 63.0 0.0 . 53 . . Atlas-SNP UBA5 79876 hgsc.bcm.edu hg19 3 132389819 132389819 + Missense_Mutation SNP T T G novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . UBA5 NM_024818 exon6 c.T505G p.L169V GGTGGGTTAGAAG . 122.0 61.0 107.0 0.0 . 33 . . Atlas-SNP GC 2638 hgsc.bcm.edu hg19 4 72649749 72649749 + Missense_Mutation SNP A A T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . GC NM_001204307 exon2 c.T44A p.L15H CCAGAGAGTCTTG . 257.0 91.0 373.0 0.0 . 132 . . Atlas-SNP ALB 213 hgsc.bcm.edu hg19 4 74275109 74275109 + Missense_Mutation SNP T T C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . ALB NM_000477 exon5 c.T520C p.Y174H TACTTTTATGCCC . 184.0 66.0 307.0 0.0 . 132 . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88533640 88533640 + Missense_Mutation SNP A A T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . DSPP NM_014208 exon4 c.A302T p.N101I TAGCAAACGAAGA . 328.0 123.0 449.0 0.0 . 174 . . Atlas-SNP ADH1A 124 hgsc.bcm.edu hg19 4 100201407 100201407 + Silent SNP T T C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . ADH1A NM_000667 exon7 c.A858G p.A286A GCCACATGCCTCA . 80.0 22.0 137.0 0.0 . 49 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155411056 155411056 + Silent SNP G G A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . DCHS2 NM_001142552 exon1 c.C1452T p.G484G TGGGGGGCCGCCG . 51.0 24.0 53.0 0.0 . 594 . . Atlas-SNP WDR17 116966 hgsc.bcm.edu hg19 4 177056301 177056301 + Missense_Mutation SNP G G A rs140987021 TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . WDR17 NM_170710 exon9 c.G1213A p.D405N CCTGACGATCCTA . 296.0 107.0 341.0 0.0 . 198 . G|1.000;A|0.000 Atlas-SNP ZFP42 132625 hgsc.bcm.edu hg19 4 188924482 188924482 + Missense_Mutation SNP A A T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . ZFP42 NM_174900 exon4 c.A521T p.K174M CTAGAAAGAAGCC . 66.0 34.0 77.0 0.0 . 87 . . Atlas-SNP ZCCHC9 84240 hgsc.bcm.edu hg19 5 80604841 80604841 + Silent SNP A A G novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . ZCCHC9 NM_001131036 exon4 c.A612G p.K204K TCCCAAAGGACTC . 117.0 68.0 147.0 0.0 . 26 . . Atlas-SNP PSD2 84249 hgsc.bcm.edu hg19 5 139213348 139213348 + Missense_Mutation SNP G G A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . PSD2 NM_032289 exon8 c.G1331A p.G444D ATGATGGCCAAGA . 111.0 30.0 78.0 0.0 . 88 . . Atlas-SNP ZNF451 26036 hgsc.bcm.edu hg19 6 56966810 56966810 + Missense_Mutation SNP A A C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . ZNF451 NM_001257273 exon4 c.A1596C p.K532N CTCCAAAGGGGAT . 114.0 38.0 182.0 0.0 . 181 . . Atlas-SNP IKZF1 10320 hgsc.bcm.edu hg19 7 50455094 50455094 + Missense_Mutation SNP G G T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . IKZF1 NM_006060 exon6 c.G641T p.S214I AGCGAAGCTCTTT . 278.0 110.0 415.0 1.0 . 613 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82584094 82584094 + Missense_Mutation SNP G G C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . PCLO NM_014510 exon5 c.C6175G p.L2059V CATCTAGTAGTTT . 75.0 27.0 90.0 0.0 . 1506 . . Atlas-SNP SEMA3E 9723 hgsc.bcm.edu hg19 7 83037763 83037763 + Missense_Mutation SNP G G C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . SEMA3E NM_012431 exon6 c.C591G p.S197R GTCTCTGCTCCAG . 112.0 41.0 174.0 0.0 . 125 . . Atlas-SNP CNOT4 4850 hgsc.bcm.edu hg19 7 135080633 135080633 + Silent SNP T T A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . CNOT4 NM_001190850 exon9 c.A882T p.I294I GTTAGATATCTGA . 87.0 30.0 110.0 0.0 . 146 . . Atlas-SNP TBXAS1 6916 hgsc.bcm.edu hg19 7 139719869 139719869 + Silent SNP T T C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . TBXAS1 NM_001166253 exon14 c.T1713C p.N571N AAAAAATGGTGTC . 50.0 25.0 61.0 0.0 . 121 . . Atlas-SNP C7orf29 113763 hgsc.bcm.edu hg19 7 150027750 150027750 + Missense_Mutation SNP A A C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . C7orf29 NM_138434 exon1 c.A257C p.E86A AGATTGAGGCCAT . 70.0 24.0 64.0 0.0 . 18 . . Atlas-SNP RP1L1 94137 hgsc.bcm.edu hg19 8 10467581 10467581 + Missense_Mutation SNP C C T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . RP1L1 NM_178857 exon4 c.G4027A p.E1343K CTGTTTCTTTAGT . 90.0 11.0 40.0 0.0 . 453 . . Atlas-SNP TOX 9760 hgsc.bcm.edu hg19 8 59851985 59851985 + Missense_Mutation SNP A A T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . TOX NM_014729 exon3 c.T287A p.L96Q TGACACAGAGAAT . 313.0 111.0 189.0 0.0 . 83 . . Atlas-SNP EEF1D 1936 hgsc.bcm.edu hg19 8 144663449 144663449 + Missense_Mutation SNP A A G novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . EEF1D NM_001130053 exon6 c.T1337C p.L446P ACGACGAGCTCAC . 269.0 143.0 90.0 0.0 . 48 . . Atlas-SNP ZNF7 7553 hgsc.bcm.edu hg19 8 146067920 146067920 + Missense_Mutation SNP A A C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . ZNF7 NM_003416 exon5 c.A1428C p.K476N TGGCAAAGGCTTT . 265.0 76.0 121.0 0.0 . 62 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79321163 79321163 + Silent SNP T T C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . PRUNE2 NM_015225 exon8 c.A6027G p.T2009T TGAATTTGTCATC . 121.0 44.0 150.0 0.0 . 331 . . Atlas-SNP CDK5RAP2 55755 hgsc.bcm.edu hg19 9 123239658 123239658 + Missense_Mutation SNP T T C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . CDK5RAP2 NM_018249 exon15 c.A1697G p.H566R ACCAGATGGGTAT . 44.0 15.0 45.0 0.0 . 157 . . Atlas-SNP FCN1 2219 hgsc.bcm.edu hg19 9 137804942 137804942 + Missense_Mutation SNP C C A rs143987379 alternate_allele TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . FCN1 NM_002003 exon6 c.G388T p.G130C GCCAGCCGCTCAG . 83.0 23.0 119.0 0.0 . 62 . C|1.000;T|0.000 Atlas-SNP PTF1A 256297 hgsc.bcm.edu hg19 10 23481461 23481461 + Missense_Mutation SNP T T A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . PTF1A NM_178161 exon1 c.T2A p.M1K CGAGCATGGACGC . 673.0 246.0 711.0 2.0 . 24 . . Atlas-SNP MAT1A 4143 hgsc.bcm.edu hg19 10 82036146 82036146 + Missense_Mutation SNP T T C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . MAT1A NM_000429 exon6 c.A754G p.I252V CTCCGATGACAAA . 83.0 27.0 98.0 0.0 . 52 . . Atlas-SNP MUC5B 727897 hgsc.bcm.edu hg19 11 1270921 1270921 + Missense_Mutation SNP T T A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . MUC5B NM_002458 exon31 c.T12811A p.S4271T CCGTCCTCCACCC . 148.0 53.0 155.0 0.0 . 473 . . Atlas-SNP OR51I2 390064 hgsc.bcm.edu hg19 11 5475217 5475217 + Missense_Mutation SNP C C A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . OR51I2 NM_001004754 exon1 c.C499A p.P167T AGGCTGCCTATCT . 22.0 13.0 57.0 0.0 . 76 . . Atlas-SNP PTPN5 84867 hgsc.bcm.edu hg19 11 18751293 18751293 + Missense_Mutation SNP C C A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . PTPN5 NM_032781 exon13 c.G1402T p.A468S GGGGGGCCCGGTC . 52.0 12.0 53.0 0.0 . 163 . . Atlas-SNP SLC5A12 159963 hgsc.bcm.edu hg19 11 26714081 26714081 + Missense_Mutation SNP G G A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . SLC5A12 NM_178498 exon9 c.C1108T p.P370S GATGAGGAAAACA . 91.0 31.0 104.0 0.0 . 134 . . Atlas-SNP EXT2 2132 hgsc.bcm.edu hg19 11 44193161 44193161 + Missense_Mutation SNP G G C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . EXT2 NM_000401 exon8 c.G1273C p.A425P TTATAGGCCCGGT . 56.0 29.0 74.0 0.0 . 129 . . Atlas-SNP OR5D14 219436 hgsc.bcm.edu hg19 11 55563595 55563595 + Silent SNP T T A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c OR5D14,NS,carcinoma,0,1 OR5D14 NM_001004735 exon1 c.T564A p.S188S CATCTCTGTGTCT . 94.0 28.0 125.0 0.0 . 116 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103325984 103325984 + Missense_Mutation SNP C C T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . DYNC2H1 NM_001080463 exon87 c.C12548T p.P4183L TCCATCCAGACAC . 59.0 16.0 91.0 0.0 . 246 . . Atlas-SNP PANX3 116337 hgsc.bcm.edu hg19 11 124482989 124482989 + Missense_Mutation SNP G G A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . PANX3 NM_052959 exon2 c.G295A p.D99N GGCCAGGACAAAA . 51.0 13.0 54.0 0.0 . 52 . . Atlas-SNP FGF23 8074 hgsc.bcm.edu hg19 12 4479524 4479524 + Missense_Mutation SNP G G C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c FGF23,NS,carcinoma,0,1 FGF23 NM_020638 exon3 c.C741G p.F247L CTTGGCGAAGGGG . 117.0 26.0 160.0 0.0 . 57 . . Atlas-SNP NDUFA9 4704 hgsc.bcm.edu hg19 12 4794433 4794433 + Missense_Mutation SNP C C T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . NDUFA9 NM_005002 exon10 c.C905T p.A302V GGGTAGCAAGAGT . 106.0 29.0 159.0 0.0 . 45 . . Atlas-SNP NR4A1 3164 hgsc.bcm.edu hg19 12 52452485 52452485 + Silent SNP G G A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . NR4A1 NM_001202233 exon8 c.G1593A p.L531L TGGGCTGCAGGAG . 65.0 4.0 93.0 0.0 . 77 . . Atlas-SNP KNTC1 9735 hgsc.bcm.edu hg19 12 123106426 123106426 + Splice_Site SNP A A T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . KNTC1 NM_014708 exon61 c.6280-2A>T . TTCTCTAGAATTT . 86.0 30.0 146.0 0.0 . 182 . . Atlas-SNP SMAD9 4093 hgsc.bcm.edu hg19 13 37453684 37453684 + Missense_Mutation SNP T T A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . SMAD9 NM_005905 exon2 c.A143T p.K48M CCCTTCTTCTTCT . 63.0 25.0 66.0 0.0 . 91 . . Atlas-SNP MAGEL2 54551 hgsc.bcm.edu hg19 15 23890781 23890781 + Silent SNP C C T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c MAGEL2_ENST00000532292,NS,carcinoma,0,1 MAGEL2 NM_019066 exon1 c.G2109A p.A703A ATTTGCCGCTGCT . 200.0 56.0 149.0 1.0 . 108 . . Atlas-SNP ACTC1 70 hgsc.bcm.edu hg19 15 35084456 35084456 + Nonsense_Mutation SNP T T A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . ACTC1 NM_005159 exon5 c.A643T p.K215X TCTCTTTAATGTC . 126.0 72.0 145.0 0.0 . 75 . . Atlas-SNP UBR1 197131 hgsc.bcm.edu hg19 15 43269020 43269020 + Missense_Mutation SNP C C A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . UBR1 NM_174916 exon39 c.G4264T p.V1422F GATCAACAGGGTC . 172.0 47.0 195.0 0.0 . 124 . . Atlas-SNP GATM 2628 hgsc.bcm.edu hg19 15 45661556 45661556 + Missense_Mutation SNP A A G novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . GATM NM_001482 exon3 c.T452C p.L151S TACTTCAATGACC . 112.0 36.0 158.0 0.0 . 34 . . Atlas-SNP UNC13C 440279 hgsc.bcm.edu hg19 15 54308039 54308039 + Missense_Mutation SNP A A T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . UNC13C NM_001080534 exon1 c.A2939T p.Y980F GGGCCTATAAAAA . 192.0 114.0 196.0 0.0 . 674 . . Atlas-SNP TBC1D10B 26000 hgsc.bcm.edu hg19 16 30380742 30380742 + Missense_Mutation SNP C C A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . TBC1D10B NM_015527 exon1 c.G763T p.G255C AGATGCCAGGTCC . 46.0 22.0 59.0 0.0 . 32 . . Atlas-SNP USP6 9098 hgsc.bcm.edu hg19 17 5041492 5041492 + Silent SNP C C T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c USP6_ENST00000250066,caecum,carcinoma,0,4 USP6 NM_004505 exon13 c.C1002T p.N334N CATGAACGATGAC . 58.0 11.0 77.0 0.0 . 213 . . Atlas-SNP PPP1R1B 84152 hgsc.bcm.edu hg19 17 37791909 37791909 + Silent SNP C C T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . PPP1R1B NM_032192 exon6 c.C495T p.R165R GGAGCGCCCACCC . 127.0 69.0 125.0 0.0 . 9 . . Atlas-SNP GFAP 2670 hgsc.bcm.edu hg19 17 42992812 42992812 + Missense_Mutation SNP C C T rs146698039 TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . GFAP NM_001131019 exon1 c.G43A p.V15I AGGAGACGTAGGA . 127.0 68.0 117.0 0.0 . 88 . C|1.000;T|0.000 Atlas-SNP LRRC37A3 374819 hgsc.bcm.edu hg19 17 62892812 62892812 + Silent SNP A A G novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . LRRC37A3 NM_199340 exon3 c.T564C p.D188D CGGTGTATCTGTA . 239.0 55.0 233.0 0.0 . 75 . . Atlas-SNP GNA13 10672 hgsc.bcm.edu hg19 17 63014400 63014400 + Silent SNP G G A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . GNA13 NM_006572 exon3 c.C532T p.L178L TATCCAGGAAATA . 415.0 106.0 372.0 0.0 . 69 . . Atlas-SNP HELZ 9931 hgsc.bcm.edu hg19 17 65174838 65174838 + Missense_Mutation SNP T T C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . HELZ NM_014877 exon13 c.A1367G p.Y456C GACTGATAGTTGC . 137.0 36.0 136.0 0.0 . 160 . . Atlas-SNP PSMD12 5718 hgsc.bcm.edu hg19 17 65340883 65340883 + Missense_Mutation SNP G G C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . PSMD12 NM_002816 exon9 c.C922G p.L308V TAAAAAGCTTTAA . 407.0 97.0 425.0 0.0 . 32 . . Atlas-SNP LOXHD1 125336 hgsc.bcm.edu hg19 18 44184173 44184173 + Missense_Mutation SNP C C G novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . LOXHD1 NM_144612 exon7 c.G779C p.G260A TTGTTCCCAATAT . 60.0 33.0 74.0 0.0 . 367 . . Atlas-SNP SMAD4 4089 hgsc.bcm.edu hg19 18 48575189 48575189 + Missense_Mutation SNP T T C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c SMAD4,rectum,carcinoma,0,1 SMAD4 NM_005359 exon3 c.T383C p.V128A TCTGTGTGAATCC . 97.0 43.0 172.0 1.0 . 822 . . Atlas-SNP DYNAP 284254 hgsc.bcm.edu hg19 18 52258515 52258515 + Missense_Mutation SNP T T C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . . NM_173629 exon1 c.T80C p.M27T CAAGAATGGACAG . 93.0 38.0 136.0 0.0 . . . . Atlas-SNP SALL3 27164 hgsc.bcm.edu hg19 18 76757080 76757080 + Missense_Mutation SNP A A T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . SALL3 NM_171999 exon3 c.A3661T p.N1221Y ATCACTAACGGGC . 151.0 10.0 180.0 0.0 . 162 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9086539 9086539 + Missense_Mutation SNP T T A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . MUC16 NM_024690 exon1 c.A5276T p.D1759V TCCACATCAGGAG . 87.0 28.0 119.0 0.0 . 4315 . . Atlas-SNP ZNF253 56242 hgsc.bcm.edu hg19 19 20003048 20003048 + Missense_Mutation SNP A A G novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . ZNF253 NM_021047 exon4 c.A992G p.K331R TACATAAGAGAAT . 123.0 64.0 135.0 0.0 . 99 . . Atlas-SNP ZNF99 7652 hgsc.bcm.edu hg19 19 22940398 22940398 + Silent SNP C C T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c ZNF99,NS,carcinoma,0,1 ZNF99 NM_001080409 exon4 c.G2313A p.K771K GAAATGCTTAAAA . 27.0 4.0 35.0 1.0 . 273 . . Atlas-SNP DMKN 93099 hgsc.bcm.edu hg19 19 36003608 36003608 + Missense_Mutation SNP G G T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . DMKN NM_001190347 exon2 c.C511A p.P171T CCCACGGAGTCCC . 51.0 18.0 58.0 0.0 . 116 . . Atlas-SNP KIRREL2 84063 hgsc.bcm.edu hg19 19 36348363 36348363 + Missense_Mutation SNP G G A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . KIRREL2 NM_199180 exon2 c.G178A p.G60R AAGAGTGGGCTGG . 157.0 63.0 183.0 0.0 . 170 . . Atlas-SNP GGN 199720 hgsc.bcm.edu hg19 19 38876402 38876402 + Silent SNP T T C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . GGN NM_152657 exon3 c.A1500G p.P500P GGGAGCTGGAGCC . 55.0 7.0 47.0 0.0 . 50 . . Atlas-SNP PNMAL1 55228 hgsc.bcm.edu hg19 19 46973527 46973527 + Missense_Mutation SNP G G T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . PNMAL1 NM_018215 exon2 c.C766A p.P256T TCCAGGGCACTGC . 28.0 9.0 54.0 0.0 . 87 . . Atlas-SNP ZNF347 84671 hgsc.bcm.edu hg19 19 53652039 53652039 + Missense_Mutation SNP T T C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . ZNF347 NM_001172675 exon4 c.A169G p.I57V AGATAATACTGAG . 128.0 45.0 169.0 0.0 . 87 . . Atlas-SNP BACH1 571 hgsc.bcm.edu hg19 21 30698823 30698823 + Silent SNP A A G novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . BACH1 NM_206866 exon3 c.A678G p.K226K CCCCAAATACAGA . 97.0 33.0 137.0 0.0 . 66 . . Atlas-SNP COL6A1 1291 hgsc.bcm.edu hg19 21 47412121 47412121 + Missense_Mutation SNP C C T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . COL6A1 NM_001848 exon17 c.C1226T p.A409V GAGAGGCGGGCGA . 69.0 25.0 86.0 0.0 . 101 . . Atlas-SNP RFPL3 10738 hgsc.bcm.edu hg19 22 32754272 32754272 + Missense_Mutation SNP C C A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . RFPL3 NM_001098535 exon1 c.C214A p.H72N GAGCCCCATGGGG . 125.0 50.0 160.0 0.0 . 91 . . Atlas-SNP DDX53 168400 hgsc.bcm.edu hg19 X 23018432 23018432 + Silent SNP C C T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . DDX53 NM_182699 exon1 c.C258T p.N86N CATAAACGGGGAA . 147.0 118.0 203.0 0.0 . 76 . . Atlas-SNP RBM41 55285 hgsc.bcm.edu hg19 X 106359256 106359256 + Missense_Mutation SNP G G A novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . RBM41 NM_001171080 exon3 c.C154T p.P52S TACCAGGAGCAAA . 138.0 115.0 187.0 1.0 . 34 . . Atlas-SNP RNF113A 7737 hgsc.bcm.edu hg19 X 119005199 119005199 + Silent SNP T T C novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . RNF113A NM_006978 exon1 c.A378G p.K126K GCGCTCTTTCTCT . 25.0 20.0 34.0 0.0 . 39 . . Atlas-SNP ATP2B3 492 hgsc.bcm.edu hg19 X 152801801 152801801 + Silent SNP G G T rs202115287 by1000genomes;alternate_allele TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . ATP2B3 NM_001001344 exon1 c.G96T p.A32A GCTGGCGGAGCTG . 80.0 65.0 127.0 0.0 . 552 . G|0.999;A|0.001 Atlas-SNP C4A 720 hgsc.bcm.edu hg19 6 31951924 31951925 + Frame_Shift_Ins INS - - T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . C4A NM_007293 exon8 c.881_882insT p.T294fs . . 149.0 27.0 163.0 0.0 . 15 . . Atlas-INDEL RHCG 51458 hgsc.bcm.edu hg19 15 90016014 90016014 + Frame_Shift_Del DEL G G - novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . RHCG NM_016321 exon10 c.1393delA p.M465fs . . 129.0 31.0 129.0 0.0 . 49 . . Atlas-INDEL PKD2L2 27039 hgsc.bcm.edu hg19 5 137275835 137275835 + Frame_Shift_Del DEL A A - novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . PKD2L2 NM_014386 exon14 c.1840delT p.X614K . . 232.0 86.0 170.0 0.0 . 68 . . Atlas-INDEL C4A 720 hgsc.bcm.edu hg19 6 31984662 31984663 + Frame_Shift_Ins INS - - T novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . C4A NM_007293 exon8 c.881_882insT p.T294fs . . 136.0 19.0 191.0 0.0 . 15 . . Atlas-INDEL HAS3 3038 hgsc.bcm.edu hg19 16 69152319 69152344 + Frame_Shift_Del DEL CGGAAGCATGGTCCGTTCACCAACGC CGGAAGCATGGTCCGTTCACCAACGC - novel TCGA-DD-AADU-01A-11D-A40R-10 TCGA-DD-AADU-10A-01D-A40U-10 CGGAAGCATGGTCCGTTCACCAACGC CGGAAGCATGGTCCGTTCACCAACGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d049bc2-80dc-4a61-b310-2c0eb6e10e9d 8e8307fc-2b03-455d-9aa9-83626768011c . HAS3 NM_138612 exon4 c.799_824del p.267_275del . . 104.0 32.0 112.0 0.0 . 61 . . Atlas-INDEL