Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
RERE	473	hgsc.bcm.edu	hg19	1	8418319	8418319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	RERE	NM_012102	exon21	c.C4276T	p.H1426Y	GGTGATGGTGCGG	.	38.0	7.0	66.0	0.0	.	129	.	.	Atlas-SNP
SH2D5	400745	hgsc.bcm.edu	hg19	1	21048322	21048322	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SH2D5	NM_001103161	exon10	c.A1235T	p.H412L	TTGGCATGGCTGA	.	116.0	34.0	129.0	0.0	.	26	.	.	Atlas-SNP
GPR3	2827	hgsc.bcm.edu	hg19	1	27721062	27721062	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	GPR3	NM_005281	exon2	c.G760C	p.G254R	GTGCTTGGAGCCT	.	56.0	15.0	48.0	0.0	.	23	.	.	Atlas-SNP
SMIM12	113444	hgsc.bcm.edu	hg19	1	35321400	35321400	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	.	NM_001164824	exon3	c.A179T	p.E60V	AGAAGCTCATCCA	.	120.0	37.0	102.0	0.0	.	.	.	.	Atlas-SNP
ZMYM1	79830	hgsc.bcm.edu	hg19	1	35580361	35580361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ZMYM1	NM_024772	exon10	c.A2930G	p.Q977R	TATTACAAAATTT	.	275.0	78.0	241.0	0.0	.	86	.	.	Atlas-SNP
ZFP69	339559	hgsc.bcm.edu	hg19	1	40955271	40955271	+	Missense_Mutation	SNP	A	A	T	rs148845197	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	.	NM_198494	exon5	c.A417T	p.K139N	AGAGAAAGAAGGC	.	155.0	48.0	109.0	0.0	.	.	.	A|0.997;G|0.003	Atlas-SNP
TIE1	7075	hgsc.bcm.edu	hg19	1	43774798	43774798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	TIE1	NM_005424	exon8	c.T1184C	p.L395P	CTGTGCTCCTGGT	.	167.0	48.0	143.0	0.0	.	132	.	.	Atlas-SNP
FPGT-TNNI3K	100526835	hgsc.bcm.edu	hg19	1	74716453	74716453	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	.	NM_001199327	exon6	c.G636A	p.K212K	TTACAAGGTAGGA	.	60.0	19.0	61.0	0.0	.	.	.	.	Atlas-SNP
ZNF644	84146	hgsc.bcm.edu	hg19	1	91406719	91406719	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ZNF644	NM_201269	exon3	c.A192G	p.T64T	AAATGATGTTTGA	.	125.0	38.0	123.0	0.0	.	120	.	.	Atlas-SNP
FNDC7	163479	hgsc.bcm.edu	hg19	1	109265059	109265059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	FNDC7	NM_001144937	exon5	c.T701C	p.M234T	CTGTGATGGCTTT	.	139.0	7.0	95.0	0.0	.	113	.	.	Atlas-SNP
VANGL1	81839	hgsc.bcm.edu	hg19	1	116206555	116206555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	VANGL1	NM_001172412	exon4	c.C478T	p.L160F	TTCAAACTCCTCA	.	105.0	38.0	87.0	0.0	.	65	.	.	Atlas-SNP
RPRD2	23248	hgsc.bcm.edu	hg19	1	150437119	150437119	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	RPRD2	NM_015203	exon10	c.A1528G	p.I510V	GCAAATATCCTCT	.	108.0	37.0	62.0	0.0	.	189	.	.	Atlas-SNP
PRG4	10216	hgsc.bcm.edu	hg19	1	186282008	186282008	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	PRG4	NM_005807	exon12	c.T4099A	p.Y1367N	TATGATTACTATG	.	172.0	78.0	85.0	0.0	.	259	.	.	Atlas-SNP
CFH	3075	hgsc.bcm.edu	hg19	1	196648796	196648796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CFH	NM_001014975	exon6	c.A663G	p.I221M	TCCTATATCTCAG	.	300.0	77.0	165.0	0.0	.	251	.	.	Atlas-SNP
NR5A2	2494	hgsc.bcm.edu	hg19	1	200017315	200017315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	NR5A2	NM_205860	exon5	c.G479A	p.R160K	CCGACCGAATGCG	.	153.0	36.0	91.0	0.0	.	83	.	.	Atlas-SNP
IL10	3586	hgsc.bcm.edu	hg19	1	206941984	206941984	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	IL10	NM_000572	exon5	c.C534T	p.N178N	GTCTCAGTTTCGT	.	78.0	37.0	61.0	0.0	.	22	.	.	Atlas-SNP
C4BPA	722	hgsc.bcm.edu	hg19	1	207288805	207288805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	C4BPA	NM_000715	exon4	c.G373A	p.E125K	CAAGTAGAGATTA	.	172.0	51.0	107.0	0.0	.	70	.	.	Atlas-SNP
RASGRP3	25780	hgsc.bcm.edu	hg19	2	33749508	33749508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	RASGRP3	NM_170672	exon10	c.C700A	p.Q234K	CTCCTTCAGCTCA	.	149.0	53.0	125.0	0.0	.	87	.	.	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61441503	61441503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	USP34	NM_014709	exon68	c.A8374G	p.I2792V	TAGCTATTGCTGG	.	151.0	53.0	125.0	0.0	.	334	.	.	Atlas-SNP
TET3	200424	hgsc.bcm.edu	hg19	2	74274165	74274165	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	TET3	NM_144993	exon1	c.C716G	p.S239C	AGCCTTCTCATTC	.	69.0	26.0	52.0	0.0	.	101	.	.	Atlas-SNP
GCFC2	6936	hgsc.bcm.edu	hg19	2	75937765	75937765	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	.	NM_001201335	exon1	c.A217T	p.S73C	GGGAGCTCGCCCA	.	35.0	16.0	47.0	0.0	.	.	.	.	Atlas-SNP
CHST10	9486	hgsc.bcm.edu	hg19	2	101014387	101014387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CHST10	NM_004854	exon5	c.T410C	p.V137A	ATCAGCACTTTCT	.	103.0	30.0	83.0	0.0	.	42	.	.	Atlas-SNP
MAP3K2	10746	hgsc.bcm.edu	hg19	2	128065257	128065257	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	MAP3K2	NM_006609	exon16	c.C1758G	p.V586V	GTCTGAGACATGA	.	131.0	36.0	114.0	0.0	.	78	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141812829	141812829	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	LRP1B	NM_018557	exon11	c.1409-1G>T	.	TTCTGACTACAAC	.	75.0	19.0	78.0	0.0	.	1315	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152350375	152350375	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	NEB	NM_001271208	exon176	c.T24691C	p.Y8231H	CTTTGTATAACAC	.	97.0	31.0	83.0	0.0	.	1697	.	.	Atlas-SNP
FAP	2191	hgsc.bcm.edu	hg19	2	163059608	163059608	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	FAP,NS,carcinoma,0,1	FAP	NM_004460	exon13	c.C1095A	p.Y365X	TATTTTGTAGTAC	.	94.0	19.0	89.0	0.0	.	122	.	.	Atlas-SNP
AOX1	316	hgsc.bcm.edu	hg19	2	201462122	201462122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	AOX1	NM_001159	exon4	c.A203G	p.H68R	GAAGGCATCACCC	.	41.0	14.0	37.0	0.0	.	152	.	.	Atlas-SNP
AOX1	316	hgsc.bcm.edu	hg19	2	201515713	201515713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	AOX1	NM_001159	exon26	c.T2864C	p.M955T	TAAACATGTACAA	.	131.0	35.0	113.0	0.0	.	152	.	.	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	hg19	2	204066340	204066340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	NBEAL1	NM_001114132	exon49	c.A7226G	p.D2409G	CACATGATGCAAA	.	213.0	56.0	173.0	0.0	.	266	.	.	Atlas-SNP
ANKRD28	23243	hgsc.bcm.edu	hg19	3	15736711	15736711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ANKRD28	NM_015199	exon16	c.A1580G	p.E527G	GGAGTTTCACTTG	.	359.0	109.0	281.0	0.0	.	121	.	.	Atlas-SNP
LRRC2	79442	hgsc.bcm.edu	hg19	3	46586621	46586621	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	LRRC2	NM_024512	exon3	c.C248G	p.T83S	GTGAGAGTGTTCC	.	130.0	50.0	82.0	0.0	.	37	.	.	Atlas-SNP
ARL6IP5	10550	hgsc.bcm.edu	hg19	3	69134210	69134210	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ARL6IP5	NM_006407	exon1	c.T12A	p.N4K	CGTTAATATCGCC	.	66.0	25.0	68.0	0.0	.	19	.	.	Atlas-SNP
CHMP2B	25978	hgsc.bcm.edu	hg19	3	87276703	87276703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CHMP2B	NM_014043	exon1	c.G31T	p.D11Y	ACCGTGGATGGTG	.	123.0	49.0	153.0	0.0	.	28	.	.	Atlas-SNP
POGLUT1	56983	hgsc.bcm.edu	hg19	3	119209506	119209506	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	POGLUT1	NM_152305	exon9	c.T906C	p.Y302Y	CTTCTATCCACAG	.	88.0	26.0	97.0	0.0	.	32	.	.	Atlas-SNP
MBNL1	4154	hgsc.bcm.edu	hg19	3	152174105	152174105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	MBNL1	NM_207296	exon5	c.A857G	p.H286R	AACAACATCTGCC	.	295.0	98.0	232.0	0.0	.	100	.	.	Atlas-SNP
ARHGEF26	26084	hgsc.bcm.edu	hg19	3	153909105	153909105	+	Silent	SNP	A	A	G	rs370646022		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	SGEF,NS,carcinoma,0,2	ARHGEF26	NM_001251962	exon8	c.A1668G	p.V556V	GGAAGTATTGTCA	.	48.0	14.0	52.0	0.0	.	158	.	.	Atlas-SNP
RARRES1	5918	hgsc.bcm.edu	hg19	3	158415600	158415600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	RARRES1,colon,carcinoma,0,1	RARRES1	NM_206963	exon6	c.G752A	p.R251H	TGAATGCGACAGG	.	252.0	63.0	244.0	0.0	.	22	.	.	Atlas-SNP
PROM1	8842	hgsc.bcm.edu	hg19	4	16077376	16077376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	PROM1	NM_001145847	exon2	c.A154G	p.I52V	TGCCAATGGGTCC	.	151.0	57.0	117.0	0.0	.	91	.	.	Atlas-SNP
PRDM5	11107	hgsc.bcm.edu	hg19	4	121720828	121720828	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	PRDM5	NM_018699	exon9	c.A1018T	p.I340F	GGGTGATCATATG	.	162.0	79.0	252.0	0.0	.	76	.	.	Atlas-SNP
TMEM184C	55751	hgsc.bcm.edu	hg19	4	148555393	148555393	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	TMEM184C	NM_018241	exon10	c.A1125G	p.L375L	AAGTTTATTATCA	.	199.0	67.0	121.0	0.0	.	25	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155155901	155155901	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	DCHS2	NM_017639	exon25	c.G8538T	p.L2846L	CTGCCCCAGGTTT	.	114.0	25.0	104.0	0.0	.	594	.	.	Atlas-SNP
TLR3	7098	hgsc.bcm.edu	hg19	4	187004611	187004611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	TLR3	NM_003265	exon4	c.A1771G	p.I591V	AAGATCATCGATT	.	190.0	54.0	147.0	0.0	.	83	.	.	Atlas-SNP
TTC33	23548	hgsc.bcm.edu	hg19	5	40716422	40716422	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	TTC33	NM_012382	exon5	c.A614T	p.D205V	TCAAAGTCATAGT	.	153.0	25.0	85.0	0.0	.	29	.	.	Atlas-SNP
MROH2B	133558	hgsc.bcm.edu	hg19	5	41018447	41018447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	.	NM_173489	exon27	c.T2759C	p.I920T	ACCTCAATATCAT	.	96.0	15.0	37.0	0.0	.	.	.	.	Atlas-SNP
PPWD1	23398	hgsc.bcm.edu	hg19	5	64868010	64868010	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	PPWD1	NM_015342	exon5	c.C866G	p.S289X	GTTTTTCACCAGA	.	160.0	14.0	108.0	0.0	.	47	.	.	Atlas-SNP
ZFYVE16	9765	hgsc.bcm.edu	hg19	5	79747408	79747408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ZFYVE16	NM_001105251	exon11	c.G3487T	p.D1163Y	AAACTTGATGATC	.	150.0	32.0	109.0	0.0	.	100	.	.	Atlas-SNP
ANKRD34B	340120	hgsc.bcm.edu	hg19	5	79854721	79854721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ANKRD34B	NM_001004441	exon5	c.C1118T	p.S373F	AGCTGGGAATCAG	.	73.0	23.0	35.0	0.0	.	61	.	.	Atlas-SNP
CHD1	1105	hgsc.bcm.edu	hg19	5	98234033	98234033	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CHD1	NM_001270	exon9	c.A1292C	p.K431T	AACTTTTTGGAAA	.	98.0	24.0	75.0	0.0	.	137	.	.	Atlas-SNP
SLCO4C1	353189	hgsc.bcm.edu	hg19	5	101627231	101627231	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SLCO4C1	NM_180991	exon2	c.C435A	p.G145G	AATCAGGCCAGTC	.	331.0	90.0	239.0	0.0	.	113	.	.	Atlas-SNP
SNX2	6643	hgsc.bcm.edu	hg19	5	122137803	122137803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SNX2	NM_003100	exon5	c.A485G	p.Y162C	TGGCATATAGAGT	.	222.0	56.0	167.0	0.0	.	42	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127685084	127685084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	FBN2	NM_001999	exon23	c.T2944C	p.C982R	CAGGGCACTCGCA	.	188.0	32.0	159.0	0.0	.	858	.	.	Atlas-SNP
AFF4	27125	hgsc.bcm.edu	hg19	5	132219082	132219082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	AFF4	NM_014423	exon20	c.A3314G	p.Y1105C	GTGGCATAGAGGA	.	131.0	26.0	92.0	0.0	.	120	.	.	Atlas-SNP
PCDHGA9	56107	hgsc.bcm.edu	hg19	5	140784951	140784951	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	PCDHGA9	NM_032089	exon1	c.C2432A	p.S811X	TGAGTTCATTTTT	.	82.0	14.0	73.0	0.0	.	110	.	.	Atlas-SNP
SLU7	10569	hgsc.bcm.edu	hg19	5	159833579	159833579	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SLU7	NM_006425	exon12	c.G1183C	p.E395Q	AGTCTTCAGTCTG	.	102.0	31.0	92.0	0.0	.	35	.	.	Atlas-SNP
GABRA6	2559	hgsc.bcm.edu	hg19	5	161116701	161116701	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	GABRA6	NM_000811	exon6	c.G589T	p.E197X	TCAGTAGAAGTCC	.	271.0	36.0	231.0	0.0	.	139	.	.	Atlas-SNP
KCNMB1	3779	hgsc.bcm.edu	hg19	5	169805835	169805835	+	Missense_Mutation	SNP	C	C	A	rs200287944	by1000genomes;alternate_allele	TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	KCNMB1	NM_004137	exon4	c.C449T	p.P150L	TAGAGGCGCTGGA	.	126.0	36.0	103.0	0.0	.	38	.	C|1.000;T|0.000	Atlas-SNP
HIST1H4H	8365	hgsc.bcm.edu	hg19	6	26285638	26285638	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	HIST1H4H	NM_003543	exon1	c.C90T	p.I30I	CTTAGTGATGCCC	.	105.0	40.0	99.0	0.0	.	16	.	.	Atlas-SNP
GSTA5	221357	hgsc.bcm.edu	hg19	6	52697726	52697726	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	GSTA5	NM_153699	exon6	c.C477G	p.H159Q	CACCAGGTGAATG	.	89.0	28.0	87.0	0.0	.	42	.	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	hg19	6	106968297	106968297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	AIM1	NM_001624	exon2	c.A1990G	p.R664G	CCTCAAAGGCCAG	.	194.0	51.0	132.0	0.0	.	161	.	.	Atlas-SNP
AKD1	221264	hgsc.bcm.edu	hg19	6	109935589	109935589	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	AKD1	NM_001145128	exon14	c.A1494T	p.E498D	TTTACCTTCTTCA	.	107.0	31.0	113.0	0.0	.	223	.	.	Atlas-SNP
ZUFSP	221302	hgsc.bcm.edu	hg19	6	116977888	116977888	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ZUFSP	NM_145062	exon5	c.C920G	p.S307X	GCTAATGATTCCA	.	113.0	6.0	87.0	0.0	.	46	.	.	Atlas-SNP
SHPRH	257218	hgsc.bcm.edu	hg19	6	146264427	146264427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SHPRH	NM_173082	exon9	c.A2090G	p.K697R	TTGATCTTCAGAT	.	150.0	51.0	120.0	0.0	.	169	.	.	Atlas-SNP
RAET1G	353091	hgsc.bcm.edu	hg19	6	150240446	150240446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	RAET1G	NM_001001788	exon3	c.C364A	p.Q122K	TGGCCTGCAGGGT	.	90.0	39.0	61.0	0.0	.	31	.	.	Atlas-SNP
WTAP	9589	hgsc.bcm.edu	hg19	6	160176075	160176075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	WTAP	NM_001270531	exon8	c.T623C	p.I208T	ACTTCATCATCCA	.	148.0	57.0	115.0	0.0	.	44	.	.	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	hg19	6	160448307	160448307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	IGF2R	NM_000876	exon6	c.G737C	p.G246A	ATGTTGGCCAGCC	.	252.0	91.0	274.0	0.0	.	251	.	.	Atlas-SNP
THBS2	7058	hgsc.bcm.edu	hg19	6	169632798	169632798	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	THBS2	NM_003247	exon13	c.C1893T	p.P631P	CCCGACGGGCTGG	.	92.0	35.0	106.0	0.0	.	230	.	.	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	hg19	7	4249794	4249794	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SDK1	NM_152744	exon38	c.G5539C	p.G1847R	GTACAAGGTAAGA	.	32.0	9.0	24.0	0.0	.	361	.	.	Atlas-SNP
SCIN	85477	hgsc.bcm.edu	hg19	7	12666228	12666228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SCIN	NM_001112706	exon8	c.G1001C	p.G334A	CAGAAGGAGGTGA	.	120.0	25.0	88.0	0.0	.	105	.	.	Atlas-SNP
TRA2A	29896	hgsc.bcm.edu	hg19	7	23545772	23545772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	TRA2A	NM_013293	exon6	c.A755G	p.Y252C	TAATCATAGTCTT	.	126.0	15.0	69.0	0.0	.	29	.	.	Atlas-SNP
FZD9	8326	hgsc.bcm.edu	hg19	7	72848989	72848989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	FZD9	NM_003508	exon1	c.G652A	p.G218S	GGGCCCGGCGTCG	.	32.0	10.0	26.0	0.0	.	51	.	.	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	hg19	7	117424330	117424330	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CTTNBP2	NM_033427	exon5	c.T2247C	p.Y749Y	AGCAGAATACAAG	.	212.0	50.0	123.0	0.0	.	200	.	.	Atlas-SNP
ATP6V0A4	50617	hgsc.bcm.edu	hg19	7	138400553	138400553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ATP6V0A4	NM_130841	exon19	c.C2213A	p.T738K	GAGGCTGTGTTTG	.	160.0	45.0	88.0	0.0	.	93	.	.	Atlas-SNP
UBE3C	9690	hgsc.bcm.edu	hg19	7	157013403	157013403	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	UBE3C	NM_014671	exon15	c.A1935T	p.P645P	TGTGCCAGCATCC	.	90.0	19.0	50.0	0.0	.	124	.	.	Atlas-SNP
KIF13B	23303	hgsc.bcm.edu	hg19	8	29035027	29035027	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	KIF13B	NM_015254	exon9	c.A789G	p.T263T	AGCGCCTGTCTTC	.	74.0	30.0	60.0	0.0	.	192	.	.	Atlas-SNP
POLB	5423	hgsc.bcm.edu	hg19	8	42218871	42218871	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	POLB	NM_002690	exon10	c.A609G	p.E203E	TTCAGAATCAACC	.	92.0	29.0	80.0	0.0	.	60	.	.	Atlas-SNP
SLC10A5	347051	hgsc.bcm.edu	hg19	8	82606702	82606702	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SLC10A5	NM_001010893	exon1	c.C506G	p.T169R	CATACTGTTTGAA	.	138.0	49.0	83.0	0.0	.	35	.	.	Atlas-SNP
SAMD12	401474	hgsc.bcm.edu	hg19	8	119391939	119391939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SAMD12	NM_207506	exon4	c.G323A	p.G108E	GCTCGCCCTGCAG	.	94.0	31.0	60.0	0.0	.	24	.	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	hg19	9	2182157	2182157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SMARCA2	NM_003070	exon31	c.A4376G	p.H1459R	GTAATCATAAGTA	.	71.0	25.0	65.0	0.0	.	313	.	.	Atlas-SNP
SNAPC3	6619	hgsc.bcm.edu	hg19	9	15423939	15423939	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SNAPC3	NM_001039697	exon2	c.A347T	p.E116V	ACGGTGAGGATCC	.	145.0	11.0	115.0	0.0	.	28	.	.	Atlas-SNP
HAUS6	54801	hgsc.bcm.edu	hg19	9	19076617	19076617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	HAUS6	NM_017645	exon11	c.A1277G	p.Y426C	GCAGGATACTGAC	.	446.0	153.0	353.0	0.0	.	66	.	.	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	hg19	9	79862174	79862174	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	VPS13A_ENST00000376634,NS,carcinoma,0,2	VPS13A	NM_001018038	exon20	c.1901-1G>T	.	TTTCCAGGTCTAC	.	228.0	108.0	264.0	0.0	.	735	.	.	Atlas-SNP
NCBP1	4686	hgsc.bcm.edu	hg19	9	100431136	100431136	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	NCBP1	NM_002486	exon21	c.T2025C	p.D675D	AAGTGATGATGAC	.	90.0	43.0	135.0	0.0	.	64	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	55698674	55698674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	PCDH15	NM_001142763	exon26	c.A3289G	p.N1097D	GTCCATTCACATA	.	77.0	13.0	55.0	0.0	.	1715	.	.	Atlas-SNP
CTNNA3	29119	hgsc.bcm.edu	hg19	10	67726454	67726454	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CTNNA3	NM_013266	exon17	c.T2316A	p.I772I	GAACTTAATCTGT	.	105.0	28.0	69.0	0.0	.	401	.	.	Atlas-SNP
CTNNA3	29119	hgsc.bcm.edu	hg19	10	67862920	67862920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CTNNA3	NM_013266	exon14	c.G1972A	p.D658N	CCCTATCAGTTTT	.	97.0	30.0	76.0	0.0	.	401	.	.	Atlas-SNP
GLUD1	2746	hgsc.bcm.edu	hg19	10	88827833	88827833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	GLUD1	NM_005271	exon5	c.C728T	p.T243I	CCTATGGTGCTGG	.	68.0	21.0	40.0	0.0	.	30	.	.	Atlas-SNP
CCDC172	374355	hgsc.bcm.edu	hg19	10	118084838	118084838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	.	NM_198515	exon3	c.C103G	p.R35G	AGATGTCGTGAAA	.	292.0	100.0	227.0	0.0	.	.	.	.	Atlas-SNP
JAKMIP3	282973	hgsc.bcm.edu	hg19	10	133955475	133955475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	JAKMIP3	NM_001105521	exon10	c.T1525C	p.Y509H	ATGGAGTACCAGG	.	43.0	11.0	57.0	0.0	.	69	.	.	Atlas-SNP
TSPAN4	7106	hgsc.bcm.edu	hg19	11	862548	862548	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	TSPAN4	NM_001025238	exon3	c.64-2A>G	.	TGCCCCAGCTGGG	.	36.0	12.0	36.0	0.0	.	14	.	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6651061	6651061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	DCHS1	NM_003737	exon11	c.C4877A	p.S1626Y	GGCGGGGAGCCGT	.	57.0	19.0	39.0	0.0	.	277	.	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6662053	6662053	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	DCHS1	NM_003737	exon2	c.G792T	p.V264V	CTCAGACACCACA	.	97.0	39.0	70.0	0.0	.	277	.	.	Atlas-SNP
TRIM66	9866	hgsc.bcm.edu	hg19	11	8667371	8667371	+	Missense_Mutation	SNP	G	G	T	rs141069498	bycluster;by1000genomes;alternate_allele	TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	TRIM66,NS,carcinoma,0,1	TRIM66	NM_014818	exon7	c.C586A	p.R196S	ACTGACGGTTGAG	.	129.0	34.0	70.0	0.0	.	45	.	G|1.000;A|0.000	Atlas-SNP
LUZP2	338645	hgsc.bcm.edu	hg19	11	25004794	25004794	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	LUZP2	NM_001009909	exon9	c.C720A	p.P240P	CCCACCCAGGAAT	.	85.0	30.0	75.0	0.0	.	90	.	.	Atlas-SNP
PRDM11	56981	hgsc.bcm.edu	hg19	11	45246226	45246226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	PRDM11	NM_001256695	exon7	c.G1201A	p.D401N	GCATCTGACCCTC	.	147.0	53.0	117.0	0.0	.	53	.	.	Atlas-SNP
LRP4	4038	hgsc.bcm.edu	hg19	11	46897190	46897190	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	LRP4	NM_002334	exon27	c.T3742A	p.L1248M	ACACCAATGTATG	.	75.0	22.0	70.0	0.0	.	160	.	.	Atlas-SNP
OR9I1	219954	hgsc.bcm.edu	hg19	11	57886845	57886845	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	OR9I1	NM_001005211	exon1	c.G72A	p.E24E	GGGAATCTCCAAT	.	149.0	39.0	125.0	0.0	.	53	.	.	Atlas-SNP
TEX40	25858	hgsc.bcm.edu	hg19	11	64070969	64070969	+	Missense_Mutation	SNP	T	T	C	rs372953044		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	.	NM_001039496	exon3	c.T368C	p.M123T	CCTCAATGTCATC	.	58.0	16.0	60.0	0.0	.	.	.	.	Atlas-SNP
PGM2L1	283209	hgsc.bcm.edu	hg19	11	74049640	74049640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	PGM2L1	NM_173582	exon13	c.C1639A	p.P547T	TCACAGGCAGCAC	.	100.0	8.0	63.0	0.0	.	59	.	.	Atlas-SNP
UBE4A	9354	hgsc.bcm.edu	hg19	11	118243850	118243850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	UBE4A	NM_004788	exon7	c.A792G	p.I264M	CTTGATATTGGAT	.	101.0	35.0	96.0	0.0	.	97	.	.	Atlas-SNP
TECTA	7007	hgsc.bcm.edu	hg19	11	120996462	120996462	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	TECTA	NM_005422	exon7	c.A1655G	p.Y552C	GCGTGTATGACCT	.	35.0	13.0	27.0	0.0	.	329	.	.	Atlas-SNP
A2M	2	hgsc.bcm.edu	hg19	12	9265122	9265122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	A2M	NM_000014	exon3	c.C281T	p.S94F	GATGAAGACTTTG	.	54.0	18.0	58.0	0.0	.	180	.	.	Atlas-SNP
CNTN1	1272	hgsc.bcm.edu	hg19	12	41331460	41331460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CNTN1	NM_001256063	exon11	c.T1199C	p.I400T	GAGCCATTTATGC	.	151.0	45.0	92.0	0.0	.	207	.	.	Atlas-SNP
ZNF740	283337	hgsc.bcm.edu	hg19	12	53578697	53578697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ZNF740	NM_001004304	exon3	c.G32A	p.G11D	GTGAAGGCCTAGC	.	109.0	13.0	76.0	0.0	.	15	.	.	Atlas-SNP
OR6C2	341416	hgsc.bcm.edu	hg19	12	55846217	55846217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	OR6C2	NM_054105	exon1	c.G220T	p.V74F	ACTACAGTCTGCA	.	94.0	6.0	66.0	0.0	.	39	.	.	Atlas-SNP
OR6C70	390327	hgsc.bcm.edu	hg19	12	55863831	55863831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	OR6C70	NM_001005499	exon1	c.T92C	p.L31P	CAATTTAGAAGTA	.	125.0	32.0	130.0	0.0	.	35	.	.	Atlas-SNP
SLC6A15	55117	hgsc.bcm.edu	hg19	12	85255460	85255460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SLC6A15	NM_182767	exon12	c.G2144A	p.G715E	AAGTACCCTATTC	.	129.0	40.0	119.0	0.0	.	159	.	.	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	hg19	12	101736269	101736269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	UTP20	NM_014503	exon33	c.C4147A	p.H1383N	TTAAAGCATTGTG	.	80.0	4.0	82.0	0.0	.	222	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112638561	112638561	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	.	NM_001109662	exon55	c.A8046T	p.E2682D	CACACCTTCACTG	.	157.0	59.0	168.0	0.0	.	.	.	.	Atlas-SNP
COQ5	84274	hgsc.bcm.edu	hg19	12	120954429	120954429	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	COQ5	NM_032314	exon3	c.T515G	p.I172S	TTGTTGATGTCAC	.	108.0	29.0	85.0	0.0	.	26	.	.	Atlas-SNP
ZMYM5	9205	hgsc.bcm.edu	hg19	13	20425899	20425899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ZMYM5	NM_001039650	exon3	c.G422T	p.W141L	AGTCCCCATTCGA	.	156.0	49.0	134.0	0.0	.	73	.	.	Atlas-SNP
CCDC169	728591	hgsc.bcm.edu	hg19	13	36822795	36822795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CCDC169	NM_001144981	exon7	c.A493G	p.K165E	GCCTTTTAGAAAC	.	85.0	41.0	70.0	0.0	.	20	.	.	Atlas-SNP
MRPS31	10240	hgsc.bcm.edu	hg19	13	41345190	41345190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	MRPS31	NM_005830	exon1	c.C83T	p.A28V	GCAGCCGCTGATG	.	68.0	39.0	125.0	0.0	.	30	.	.	Atlas-SNP
GPR183	1880	hgsc.bcm.edu	hg19	13	99948232	99948232	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	GPR183	NM_004951	exon2	c.T168A	p.I56I	TTGAACAATGACG	.	191.0	54.0	189.0	0.0	.	38	.	.	Atlas-SNP
NPAS3	64067	hgsc.bcm.edu	hg19	14	34269098	34269098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	NPAS3	NM_001164749	exon12	c.G1585A	p.D529N	GACAGCGACGACA	.	83.0	28.0	67.0	0.0	.	266	.	.	Atlas-SNP
DAAM1	23002	hgsc.bcm.edu	hg19	14	59819293	59819293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	DAAM1	NM_014992	exon18	c.A2240G	p.H747R	AGGAACATAAACA	.	146.0	47.0	113.0	0.0	.	95	.	.	Atlas-SNP
NOXRED1	122945	hgsc.bcm.edu	hg19	14	77861072	77861072	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	NOXRED1	NM_001113475	exon6	c.G982C	p.V328L	GGAGAACAGGACT	.	186.0	59.0	151.0	0.0	.	23	.	.	Atlas-SNP
GALC	2581	hgsc.bcm.edu	hg19	14	88431941	88431941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	GALC	NM_000153	exon9	c.A941G	p.Y314C	TGTTCATAGTAAC	.	145.0	39.0	138.0	0.0	.	48	.	.	Atlas-SNP
MARK3	4140	hgsc.bcm.edu	hg19	14	103969371	103969371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	MARK3	NM_001128918	exon18	c.A2069G	p.Y690C	GCGACTATGAGCA	.	138.0	45.0	113.0	0.0	.	86	.	.	Atlas-SNP
MAGEL2	54551	hgsc.bcm.edu	hg19	15	23889515	23889515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	MAGEL2	NM_019066	exon1	c.C3375A	p.N1125K	GACACAGTTGCCT	.	139.0	37.0	79.0	0.0	.	108	.	.	Atlas-SNP
MAPKBP1	23005	hgsc.bcm.edu	hg19	15	42106909	42106909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	MAPKBP1	NM_001128608	exon11	c.A1160G	p.Y387C	CTCTGTATCATTC	.	165.0	24.0	113.0	0.0	.	120	.	.	Atlas-SNP
USP8	9101	hgsc.bcm.edu	hg19	15	50757317	50757317	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	USP8	NM_001128610	exon7	c.A615T	p.R205R	TGCTCGAAGAATG	.	199.0	17.0	151.0	0.0	.	90	.	.	Atlas-SNP
TRPM7	54822	hgsc.bcm.edu	hg19	15	50901794	50901794	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	TRPM7	NM_017672	exon19	c.A2564T	p.K855I	CAGAATTTTACAA	.	337.0	89.0	228.0	0.0	.	145	.	.	Atlas-SNP
SNUPN	10073	hgsc.bcm.edu	hg19	15	75890985	75890985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SNUPN	NM_001042581	exon9	c.A797G	p.Y266C	GGGCTGTAGTGGG	.	70.0	15.0	68.0	0.0	.	26	.	.	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	hg19	15	88678352	88678352	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	NTRK3	NM_001243101	exon10	c.T1184A	p.F395Y	TTGAGGAAGTGGC	.	159.0	42.0	146.0	0.0	.	587	.	.	Atlas-SNP
RCCD1	91433	hgsc.bcm.edu	hg19	15	91500546	91500546	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	RCCD1	NM_001017919	exon3	c.G370C	p.D124H	GAAGACGATCCGG	.	63.0	21.0	79.0	0.0	.	9	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	396667	396667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	AXIN1	NM_181050	exon2	c.C359A	p.A120D	GTGCAGGCAAACC	.	37.0	15.0	62.0	0.0	.	290	.	.	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24818081	24818081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	TNRC6A	NM_014494	exon17	c.A4516G	p.N1506D	CCAATAAATGCTT	.	129.0	35.0	139.0	0.0	.	171	.	.	Atlas-SNP
C16orf82	162083	hgsc.bcm.edu	hg19	16	27078365	27078365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	.	NM_001145545	exon1	c.G49A	p.G17R	GAAAAAGGGGAAT	.	87.0	30.0	77.0	0.0	.	.	.	.	Atlas-SNP
ZNF668	79759	hgsc.bcm.edu	hg19	16	31072498	31072498	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ZNF668	NM_001172669	exon4	c.C1820G	p.A607G	TCGCTGGCACTCA	.	95.0	21.0	100.0	0.0	.	121	.	.	Atlas-SNP
GPT2	84706	hgsc.bcm.edu	hg19	16	46960942	46960942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	GPT2,colon,carcinoma,0,1	GPT2	NM_133443	exon11	c.C1474T	p.H492Y	ACTTACCACTTCA	.	76.0	18.0	54.0	0.0	.	40	.	.	Atlas-SNP
CHD9	80205	hgsc.bcm.edu	hg19	16	53265378	53265378	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	CHD9,NS,carcinoma,0,1	CHD9	NM_025134	exon9	c.A2334G	p.V778V	CAGAGTATTAGAA	.	300.0	98.0	257.0	0.0	.	203	.	.	Atlas-SNP
SLC38A8	146167	hgsc.bcm.edu	hg19	16	84075664	84075664	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SLC38A8	NM_001080442	exon1	c.C99T	p.L33L	CTTCATGAGGATG	.	53.0	6.0	60.0	0.0	.	60	.	.	Atlas-SNP
ZCCHC14	23174	hgsc.bcm.edu	hg19	16	87445967	87445967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ZCCHC14	NM_015144	exon12	c.C1949T	p.A650V	GAAATGGCAGAAT	.	89.0	21.0	105.0	0.0	.	87	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578265	7578265	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	TP53_ENST00000545858,NS,carcinoma,0,5	TP53	NM_000546	exon6	c.T584G	p.I195S	ACTCGGATAAGAT	.	118.0	59.0	144.0	0.0	.	33396	.	.	Atlas-SNP
ALOX12B	242	hgsc.bcm.edu	hg19	17	7984083	7984083	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ALOX12B	NM_001139	exon5	c.T543G	p.I181M	TCCCGGAATATAG	.	62.0	32.0	64.0	0.0	.	61	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11778398	11778398	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	DNAH9	NM_001372	exon53	c.T10375A	p.C3459S	ATCAACTGTGAGC	.	53.0	23.0	83.0	0.0	.	695	.	.	Atlas-SNP
SSH2	85464	hgsc.bcm.edu	hg19	17	27958047	27958047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SSH2	NM_033389	exon15	c.G4084A	p.G1362R	CAAGTCCTGCCCT	.	112.0	41.0	83.0	0.0	.	107	.	.	Atlas-SNP
SLFN11	91607	hgsc.bcm.edu	hg19	17	33679955	33679955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SLFN11	NM_152270	exon5	c.A2126G	p.H709R	TCCAAGTGGCTGG	.	107.0	34.0	96.0	0.0	.	112	.	.	Atlas-SNP
CCL16	6360	hgsc.bcm.edu	hg19	17	34304751	34304751	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CCL16	NM_004590	exon3	c.A214C	p.N72H	CTCGGTTCCTCTT	.	147.0	67.0	125.0	0.0	.	7	.	.	Atlas-SNP
G6PC	2538	hgsc.bcm.edu	hg19	17	41059553	41059553	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	G6PC	NM_000151	exon3	c.C354G	p.G118G	CTCTGGCCATGCC	.	83.0	31.0	67.0	0.0	.	48	.	.	Atlas-SNP
FMNL1	752	hgsc.bcm.edu	hg19	17	43318781	43318781	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	FMNL1	NM_005892	exon14	c.C1365A	p.P455P	GGGGCCCTCCAGG	.	89.0	29.0	58.0	0.0	.	78	.	.	Atlas-SNP
TRIM37	4591	hgsc.bcm.edu	hg19	17	57089748	57089748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	TRIM37	NM_015294	exon22	c.C2636A	p.S879Y	GTTTCAGAATTAT	.	42.0	14.0	42.0	0.0	.	105	.	.	Atlas-SNP
TANC2	26115	hgsc.bcm.edu	hg19	17	61476200	61476200	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	TANC2	NM_025185	exon17	c.G3034C	p.D1012H	CTACTTGATCTTC	.	134.0	59.0	115.0	0.0	.	266	.	.	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	hg19	17	65871691	65871691	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	BPTF	NM_004459	exon5	c.T1884G	p.D628E	TGGGGATAAAGGT	.	92.0	44.0	63.0	0.0	.	415	.	.	Atlas-SNP
LGALS3BP	3959	hgsc.bcm.edu	hg19	17	76968304	76968304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	LGALS3BP	NM_005567	exon6	c.C1112T	p.A371V	AACAGGGCCTCGT	.	104.0	25.0	73.0	0.0	.	47	.	.	Atlas-SNP
SGSH	6448	hgsc.bcm.edu	hg19	17	78184755	78184755	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SGSH	NM_000199	exon8	c.C1005A	p.I335I	GCCAAAGATGGCG	.	1031.0	278.0	890.0	0.0	.	27	.	.	Atlas-SNP
LPIN2	9663	hgsc.bcm.edu	hg19	18	2926805	2926805	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	LPIN2	NM_014646	exon14	c.1711-2A>T	.	GGCAGCTGTAACA	.	33.0	8.0	28.0	0.0	.	75	.	.	Atlas-SNP
PIEZO2	63895	hgsc.bcm.edu	hg19	18	10691266	10691266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	.	NM_022068	exon44	c.C6967T	p.L2323F	TGGTGAGGAAGTT	.	160.0	59.0	115.0	0.0	.	.	.	.	Atlas-SNP
CHMP1B	57132	hgsc.bcm.edu	hg19	18	11852040	11852040	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CHMP1B	NM_020412	exon1	c.G530C	p.G177A	CCGTGGGCACGAG	.	55.0	15.0	60.0	0.0	.	16	.	.	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	hg19	18	44085896	44085896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	LOXHD1	NM_144612	exon36	c.A5597G	p.N1866S	AACTTGTTCCAGT	.	89.0	29.0	91.0	0.0	.	367	.	.	Atlas-SNP
TCF4	6925	hgsc.bcm.edu	hg19	18	53128331	53128331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	TCF4	NM_001243226	exon6	c.A529G	p.T177A	AGGGAGTCCCATC	.	96.0	33.0	87.0	0.0	.	178	.	.	Atlas-SNP
NETO1	81832	hgsc.bcm.edu	hg19	18	70532098	70532098	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	NETO1	NM_001201465	exon3	c.T165C	p.S55S	GTTGGGAGAGGTA	.	106.0	28.0	99.0	0.0	.	178	.	.	Atlas-SNP
CNDP2	55748	hgsc.bcm.edu	hg19	18	72186270	72186270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	CNDP2,NS,carcinoma,0,1	CNDP2	NM_018235	exon11	c.A1297G	p.M433V	AACGTCATGCTGC	.	106.0	41.0	99.0	0.0	.	55	.	.	Atlas-SNP
DUS3L	56931	hgsc.bcm.edu	hg19	19	5789493	5789493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	DUS3L	NM_020175	exon3	c.G625A	p.G209S	CCAGGCCGTTGCG	.	63.0	23.0	66.0	0.0	.	42	.	.	Atlas-SNP
C19orf59	199675	hgsc.bcm.edu	hg19	19	7743056	7743056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	C19orf59	NM_174918	exon3	c.T251C	p.L84P	CCATCCTGAGCCT	.	65.0	22.0	60.0	0.0	.	15	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	8959675	8959675	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	MUC16	NM_024690	exon84	c.A43457C	p.E14486A	TTGTATTCTCCTT	.	77.0	23.0	72.0	0.0	.	4315	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	8993436	8993436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	MUC16	NM_024690	exon66	c.C41653A	p.L13885M	GGGTCAGCTGGCT	.	82.0	5.0	66.0	0.0	.	4315	.	.	Atlas-SNP
ATP13A1	57130	hgsc.bcm.edu	hg19	19	19766404	19766404	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ATP13A1	NM_020410	exon10	c.G1329C	p.E443D	GAAGGTCTCCAGG	.	92.0	42.0	82.0	0.0	.	82	.	.	Atlas-SNP
HPN	3249	hgsc.bcm.edu	hg19	19	35551277	35551277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	HPN	NM_182983	exon8	c.G481T	p.D161Y	CCCGTGGACCGCA	.	98.0	54.0	63.0	0.0	.	45	.	.	Atlas-SNP
ZNF229	7772	hgsc.bcm.edu	hg19	19	44933829	44933829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ZNF229	NM_014518	exon6	c.C1127A	p.P376H	TTATAGGGTCTCC	.	153.0	36.0	77.0	0.0	.	123	.	.	Atlas-SNP
EMC10	284361	hgsc.bcm.edu	hg19	19	50984147	50984147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	.	NM_175063	exon6	c.G591T	p.E197D	CCCTGAGACGGCG	.	119.0	63.0	83.0	0.0	.	.	.	.	Atlas-SNP
LILRB3	11025	hgsc.bcm.edu	hg19	19	54724954	54724954	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	LILRB3	NM_001081450	exon6	c.955+1G>T	.	TCCTCACCTGCCA	.	66.0	33.0	50.0	0.0	.	67	.	.	Atlas-SNP
ZIM3	114026	hgsc.bcm.edu	hg19	19	57648312	57648312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ZIM3	NM_052882	exon4	c.T170C	p.V57A	AAGATCACATCGG	.	203.0	89.0	126.0	0.0	.	107	.	.	Atlas-SNP
ZNF587	84914	hgsc.bcm.edu	hg19	19	58370623	58370623	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ZNF587	NM_032828	exon3	c.C843T	p.S281S	AAAGAGCAGCCTT	.	296.0	154.0	211.0	0.0	.	53	.	.	Atlas-SNP
ITCH	83737	hgsc.bcm.edu	hg19	20	33059320	33059320	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ITCH	NM_001257137	exon17	c.G1692C	p.Q564H	TCAACAGGTACTG	.	112.0	54.0	69.0	0.0	.	73	.	.	Atlas-SNP
ITCH	83737	hgsc.bcm.edu	hg19	20	33095536	33095536	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ITCH	NM_001257137	exon26	c.T2649C	p.Y883Y	GAGCTATGAGCAA	.	106.0	22.0	64.0	0.0	.	73	.	.	Atlas-SNP
CEP250	11190	hgsc.bcm.edu	hg19	20	34063355	34063355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CEP250	NM_007186	exon15	c.A1600G	p.K534E	GAAGCCAAACAGT	.	105.0	31.0	75.0	0.0	.	141	.	.	Atlas-SNP
TTI1	9675	hgsc.bcm.edu	hg19	20	36641091	36641091	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	TTI1	NM_014657	exon3	c.A1128C	p.E376D	CAGGCTTTCTGAC	.	183.0	73.0	97.0	0.0	.	104	.	.	Atlas-SNP
MC3R	4159	hgsc.bcm.edu	hg19	20	54823965	54823965	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	MC3R	NM_019888	exon1	c.A66G	p.Q22Q	CCTCCAAGCCCCT	.	75.0	13.0	40.0	0.0	.	83	.	.	Atlas-SNP
MC3R	4159	hgsc.bcm.edu	hg19	20	54823996	54823996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	MC3R	NM_019888	exon1	c.G97A	p.A33T	AGCAGCGCCTTCT	.	80.0	22.0	41.0	0.0	.	83	.	.	Atlas-SNP
DEPDC5	9681	hgsc.bcm.edu	hg19	22	32241108	32241108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	DEPDC5	NM_001242896	exon30	c.A2906G	p.Y969C	ACATCTATGGGGA	.	64.0	20.0	38.0	0.0	.	266	.	.	Atlas-SNP
ACO2	50	hgsc.bcm.edu	hg19	22	41903896	41903896	+	Missense_Mutation	SNP	G	G	A	rs147763800		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	ACO2	NM_001098	exon3	c.G275A	p.R92Q	GGCTGCGGCCGGA	.	129.0	42.0	112.0	0.0	.	58	.	G|1.000;A|0.000	Atlas-SNP
GPR64	10149	hgsc.bcm.edu	hg19	X	19051754	19051754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	GPR64	NM_001184834	exon8	c.T281C	p.I94T	TTTACTATAGTGA	.	415.0	263.0	345.0	0.0	.	102	.	.	Atlas-SNP
MAOA	4128	hgsc.bcm.edu	hg19	X	43571157	43571157	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	MAOA	NM_000240	exon4	c.A345G	p.V115V	ACCAGTATGGAAT	.	73.0	41.0	53.0	0.0	.	48	.	.	Atlas-SNP
SMC1A	8243	hgsc.bcm.edu	hg19	X	53421753	53421753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SMC1A	NM_006306	exon19	c.A2918G	p.Y973C	CGTGCATAGATAC	.	17.0	8.0	19.0	0.0	.	112	.	.	Atlas-SNP
CLCN2	1181	hgsc.bcm.edu	hg19	3	184071906	184071907	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CLCN2	NM_004366	exon15	c.1704_1705insT	p.L568fs	.	.	101.0	28.0	62.0	0.0	.	74	.	.	Atlas-INDEL
CNTN3	5067	hgsc.bcm.edu	hg19	3	74414775	74414776	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CNTN3	NM_020872	exon8	c.1025_1026insA	p.S342fs	.	.	121.0	39.0	83.0	0.0	.	174	.	.	Atlas-INDEL
KCTD6	200845	hgsc.bcm.edu	hg19	3	58487150	58487158	+	In_Frame_Del	DEL	GACACCAGA	GACACCAGA	-	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	GACACCAGA	GACACCAGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	KCTD6	NM_001128214	exon3	c.504_512del	p.168_171del	.	.	169.0	36.0	172.0	0.0	.	14	.	.	Atlas-INDEL
FAT1	2195	hgsc.bcm.edu	hg19	4	187534378	187534378	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	FAT1	NM_005245	exon13	c.9349delG	p.D3117fs	.	.	69.0	28.0	70.0	0.0	.	500	.	.	Atlas-INDEL
CDC25B	994	hgsc.bcm.edu	hg19	20	3783772	3783772	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	CDC25B	NM_021873	exon13	c.1274delC	p.T425fs	.	.	121.0	34.0	116.0	0.0	.	76	.	.	Atlas-INDEL
NOL7	51406	hgsc.bcm.edu	hg19	6	13621055	13621062	+	Frame_Shift_Del	DEL	AGTAAATC	AGTAAATC	-	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	AGTAAATC	AGTAAATC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	NOL7	NM_016167	exon8	c.769_806del	p.257_258del	.	.	354.0	58.0	353.0	0.0	.	18	.	.	Atlas-INDEL
PCDHGA4	56111	hgsc.bcm.edu	hg19	5	140736599	140736599	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	PCDHGA4	NM_018917	exon1	c.1831delT	p.S611fs	.	.	126.0	14.0	143.0	0.0	.	150	.	.	Atlas-INDEL
PBLD	64081	hgsc.bcm.edu	hg19	10	70045070	70045073	+	Frame_Shift_Del	DEL	CAAA	CAAA	-	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	CAAA	CAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	PBLD	NM_001033083	exon9	c.787_790del	p.263_264del	.	.	58.0	13.0	57.0	0.0	.	53	.	.	Atlas-INDEL
SAMHD1	25939	hgsc.bcm.edu	hg19	20	35533779	35533780	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	SAMHD1	NM_015474	exon12	c.1398_1399insT	p.I466fs	.	.	238.0	40.0	107.0	0.0	.	62	.	.	Atlas-INDEL
HEATR6	63897	hgsc.bcm.edu	hg19	17	58134607	58134613	+	Frame_Shift_Del	DEL	CCACCAA	CCACCAA	-	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	CCACCAA	CCACCAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	HEATR6	NM_022070	exon12	c.1876_1882del	p.626_628del	.	.	122.0	49.0	102.0	0.0	.	98	.	.	Atlas-INDEL
GMPPB	29925	hgsc.bcm.edu	hg19	3	49759883	49759883	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAEA-01A-11D-A40R-10	TCGA-DD-AAEA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9570a286-fdf7-4d2c-ad57-ed9e9d7f29ef	7ea301e0-14bb-4e22-8891-42db5e0556e7	.	GMPPB	NM_013334	exon6	c.623delA	p.Y208fs	.	.	65.0	25.0	73.0	0.0	.	14	.	.	Atlas-INDEL