Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm KAZN 23254 hgsc.bcm.edu hg19 1 15382644 15382644 + Missense_Mutation SNP A A T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . KAZN NM_015209 exon5 c.A784T p.M262L CTCGCCATGCCGG . 169.0 61.0 189.0 0.0 . 57 . . Atlas-SNP AHDC1 27245 hgsc.bcm.edu hg19 1 27876698 27876698 + Silent SNP C C T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . AHDC1 NM_001029882 exon6 c.G1929A p.P643P CGACTCCGGCTCA . 77.0 30.0 70.0 0.0 . 98 . . Atlas-SNP PPT1 5538 hgsc.bcm.edu hg19 1 40562825 40562825 + Missense_Mutation SNP G G T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . PPT1 NM_000310 exon1 c.C86A p.P29Q GCCGGCGGGTCCA . 436.0 138.0 411.0 1.0 . 18 . . Atlas-SNP LRP8 7804 hgsc.bcm.edu hg19 1 53716470 53716470 + Silent SNP G G T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . LRP8 NM_004631 exon17 c.C2568A p.T856T GCTTTTGGTGTTC . 65.0 22.0 59.0 0.0 . 58 . . Atlas-SNP ASB17 127247 hgsc.bcm.edu hg19 1 76397715 76397715 + Missense_Mutation SNP C C A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 ASB17,colon,carcinoma,0,1 ASB17 NM_080868 exon1 c.G262T p.D88Y TGAAGTCGAGGTT . 192.0 65.0 184.0 0.0 . 53 . . Atlas-SNP MCOLN2 255231 hgsc.bcm.edu hg19 1 85406668 85406668 + Missense_Mutation SNP T T A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . MCOLN2 NM_153259 exon8 c.A854T p.K285I GCATTTTTCTGAG . 93.0 31.0 122.0 0.0 . 60 . . Atlas-SNP MCOLN2 255231 hgsc.bcm.edu hg19 1 85422189 85422189 + Missense_Mutation SNP A A T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . MCOLN2 NM_153259 exon4 c.T490A p.C164S GCTTACAGACTTT . 144.0 6.0 133.0 0.0 . 60 . . Atlas-SNP PRRC2C 23215 hgsc.bcm.edu hg19 1 171484941 171484941 + Missense_Mutation SNP A A G novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . . NM_015172 exon5 c.A463G p.K155E GAAAAAAAAGAAA . 587.0 218.0 559.0 0.0 . . . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186088326 186088326 + Missense_Mutation SNP C C A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 HMCN1,NS,carcinoma,+1,1 HMCN1 NM_031935 exon78 c.C11852A p.A3951E TAGGAGCAATTGA . 161.0 57.0 140.0 0.0 . 797 . . Atlas-SNP USP34 9736 hgsc.bcm.edu hg19 2 61632843 61632843 + Silent SNP C C T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . USP34 NM_014709 exon3 c.G552A p.E184E ACATACCTCAATA . 300.0 106.0 316.0 1.0 . 334 . . Atlas-SNP ARHGAP25 9938 hgsc.bcm.edu hg19 2 69014971 69014971 + Splice_Site SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ARHGAP25 NM_001007231 exon4 c.350-1G>A . CCTCCAGCCTCAT . 77.0 24.0 84.0 0.0 . 175 . . Atlas-SNP LRRTM1 347730 hgsc.bcm.edu hg19 2 80529433 80529433 + Missense_Mutation SNP G G C novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . LRRTM1 NM_178839 exon2 c.C1512G p.I504M CTCGTTGATGATC . 75.0 28.0 65.0 0.0 . 251 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84838966 84838966 + Missense_Mutation SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . DNAH6 NM_001370 exon22 c.G3463A p.A1155T CGAGCCGCTACTC . 506.0 166.0 459.0 0.0 . 194 . . Atlas-SNP CHST10 9486 hgsc.bcm.edu hg19 2 101023123 101023123 + Missense_Mutation SNP C C A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . CHST10 NM_004854 exon3 c.G15T p.W5C CAGAAGCCACTGG . 119.0 30.0 112.0 0.0 . 42 . . Atlas-SNP GCC2 9648 hgsc.bcm.edu hg19 2 109087121 109087121 + Missense_Mutation SNP T T A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . GCC2 NM_181453 exon6 c.T1336A p.S446T TTTTTGTCAGATT . 446.0 158.0 472.0 1.0 . 129 . . Atlas-SNP NEB 4703 hgsc.bcm.edu hg19 2 152581406 152581406 + Missense_Mutation SNP C C T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . NEB NM_004543 exon7 c.G472A p.E158K CATGTTCAATATC . 57.0 20.0 68.0 0.0 . 1697 . . Atlas-SNP SLC4A10 57282 hgsc.bcm.edu hg19 2 162738921 162738921 + Silent SNP T T A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . SLC4A10 NM_001178015 exon10 c.T1161A p.I387I TGAGATTGGCAGA . 316.0 109.0 347.0 0.0 . 309 . . Atlas-SNP NEU4 129807 hgsc.bcm.edu hg19 2 242758032 242758032 + Silent SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . NEU4 NM_001167599 exon4 c.G1152A p.P384P TGCCCCGCCCCAG . 78.0 26.0 72.0 0.0 . 39 . . Atlas-SNP ZNF589 51385 hgsc.bcm.edu hg19 3 48310031 48310031 + Missense_Mutation SNP G G T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ZNF589 NM_016089 exon4 c.G850T p.G284C GGGCGAGGCTTTA . 151.0 57.0 151.0 0.0 . 20 . . Atlas-SNP ZNF589 51385 hgsc.bcm.edu hg19 3 48310032 48310032 + Missense_Mutation SNP G G T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ZNF589 NM_016089 exon4 c.G851T p.G284V GGCGAGGCTTTAT . 151.0 56.0 148.0 0.0 . 20 . . Atlas-SNP DNAH12 201625 hgsc.bcm.edu hg19 3 57493370 57493370 + Silent SNP C C T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . DNAH12 NM_198564 exon8 c.G897A p.Q299Q ATGTACCTGATTT . 62.0 25.0 59.0 0.0 . 182 . . Atlas-SNP BOC 91653 hgsc.bcm.edu hg19 3 112997029 112997029 + Missense_Mutation SNP A A T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . BOC NM_033254 exon10 c.A1627T p.S543C CCCGGGAGCTTGT . 136.0 55.0 123.0 0.0 . 139 . . Atlas-SNP KIAA2018 205717 hgsc.bcm.edu hg19 3 113380094 113380094 + Missense_Mutation SNP T T A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . KIAA2018 NM_001009899 exon7 c.A435T p.K145N AATTTTTTTTTGA . 215.0 70.0 186.0 0.0 . 180 . . Atlas-SNP CLSTN2 64084 hgsc.bcm.edu hg19 3 140123468 140123468 + Missense_Mutation SNP A A T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . CLSTN2 NM_022131 exon4 c.A497T p.K166M CCTACAAGGCTGT . 181.0 72.0 199.0 0.0 . 190 . . Atlas-SNP ATR 545 hgsc.bcm.edu hg19 3 142215316 142215316 + Missense_Mutation SNP T T A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ATR NM_001184 exon34 c.A5785T p.R1929W CTACCCTGGCACT . 57.0 24.0 70.0 0.0 . 285 . . Atlas-SNP SLC2A2 6514 hgsc.bcm.edu hg19 3 170732355 170732355 + Missense_Mutation SNP G G C novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . SLC2A2 NM_000340 exon3 c.C274G p.L92V TGATTAGTTGAGC . 144.0 49.0 145.0 0.0 . 71 . . Atlas-SNP TAPT1 202018 hgsc.bcm.edu hg19 4 16168391 16168391 + Missense_Mutation SNP T T A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . TAPT1 NM_153365 exon13 c.A1339T p.S447C CGATGCTATTAAG . 95.0 53.0 99.0 0.0 . 31 . . Atlas-SNP PYURF 100996939 hgsc.bcm.edu hg19 4 89444729 89444729 + Silent SNP C C T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . . NM_032906 exon1 c.G123A p.K41K AGTCTTCTTGCCC . 153.0 29.0 182.0 0.0 . . . . Atlas-SNP INTU 27152 hgsc.bcm.edu hg19 4 128564999 128564999 + Missense_Mutation SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 INTU,NS,carcinoma,0,1 INTU NM_015693 exon2 c.G470A p.R157Q AACAGCGATACAA . 464.0 172.0 494.0 0.0 . 92 . . Atlas-SNP HELT 391723 hgsc.bcm.edu hg19 4 185940790 185940790 + Missense_Mutation SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . HELT NM_001029887 exon3 c.G277A p.E93K CCTCAGGAGGCTC . 158.0 51.0 149.0 0.0 . 34 . . Atlas-SNP PJA2 9867 hgsc.bcm.edu hg19 5 108679977 108679977 + Missense_Mutation SNP T T A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . PJA2 NM_014819 exon9 c.A1915T p.S639C ACTCACTGCAACA . 431.0 156.0 408.0 1.0 . 53 . . Atlas-SNP PCDHB13 56123 hgsc.bcm.edu hg19 5 140595753 140595753 + Silent SNP C C T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . PCDHB13 NM_018933 exon1 c.C2058T p.L686L CTTGCTCACCGTC . 96.0 31.0 112.0 0.0 . 142 . . Atlas-SNP GABRG2 2566 hgsc.bcm.edu hg19 5 161495110 161495110 + Silent SNP T T C novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . GABRG2 NM_198904 exon1 c.T105C p.P35P CTACCCTGGGTAA . 98.0 41.0 84.0 0.0 . 142 . . Atlas-SNP DOCK2 1794 hgsc.bcm.edu hg19 5 169138990 169138990 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 DOCK2,NS,carcinoma,0,2 DOCK2 NM_004946 exon16 c.C1534T p.R512X ATGTTTCGACATC . 96.0 33.0 89.0 0.0 . 389 . . Atlas-SNP PHACTR1 221692 hgsc.bcm.edu hg19 6 13286433 13286433 + Missense_Mutation SNP A A T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . PHACTR1 NM_030948 exon14 c.A1706T p.E569V TTCATGAATTGAG . 143.0 32.0 114.0 0.0 . 94 . . Atlas-SNP SYNGAP1 8831 hgsc.bcm.edu hg19 6 33410881 33410881 + Missense_Mutation SNP C C T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . SYNGAP1 NM_006772 exon15 c.C2552T p.P851L ATGGGCCTGGTGG . 97.0 44.0 123.0 0.0 . 202 . . Atlas-SNP FGD2 221472 hgsc.bcm.edu hg19 6 36993582 36993582 + Missense_Mutation SNP G G T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . FGD2 NM_173558 exon14 c.G1473T p.R491S TGCCAGGTGCTCC . 90.0 32.0 109.0 0.0 . 65 . . Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 66063431 66063431 + Missense_Mutation SNP T T G novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . EYS NM_001142801 exon9 c.A1379C p.Y460S CCACAGTAGCAGA . 328.0 41.0 324.0 0.0 . 527 . . Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47976458 47976458 + Missense_Mutation SNP T T A rs145116707 alternate_allele TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . PKD1L1 NM_138295 exon4 c.A383T p.D128V CTGTTATCACAAT . 90.0 37.0 87.0 0.0 . 328 . T|1.000;C|0.000 Atlas-SNP C7orf72 100130988 hgsc.bcm.edu hg19 7 50169362 50169362 + Missense_Mutation SNP A A T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . C7orf72 NM_001161834 exon3 c.A701T p.D234V CAAAGGACTCATT . 331.0 118.0 329.0 0.0 . 26 . . Atlas-SNP ZNF282 8427 hgsc.bcm.edu hg19 7 148895458 148895458 + Missense_Mutation SNP A A C novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ZNF282 NM_003575 exon2 c.A199C p.M67L CGGCCAATGCCTT . 162.0 44.0 99.0 0.0 . 42 . . Atlas-SNP SLCO5A1 81796 hgsc.bcm.edu hg19 8 70594495 70594495 + Missense_Mutation SNP A A G novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . SLCO5A1 NM_030958 exon7 c.T1706C p.V569A CCACAGACTGGCT . 281.0 13.0 138.0 0.0 . 142 . . Atlas-SNP MTSS1 9788 hgsc.bcm.edu hg19 8 125565918 125565918 + Missense_Mutation SNP T T C novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . MTSS1 NM_014751 exon14 c.A1583G p.Y528C GAGAAATAATCAT . 190.0 44.0 87.0 0.0 . 79 . . Atlas-SNP PLIN2 123 hgsc.bcm.edu hg19 9 19119797 19119797 + Missense_Mutation SNP G G T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . PLIN2 NM_001122 exon6 c.C628A p.L210M GAACCAGATCAAA . 91.0 30.0 105.0 0.0 . 41 . . Atlas-SNP IFNA16 3449 hgsc.bcm.edu hg19 9 21217149 21217149 + Silent SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . IFNA16 NM_002173 exon1 c.C156T p.C52C CTTCAGGCAGGAG . 205.0 78.0 194.0 0.0 . 27 . . Atlas-SNP IFNA2 3440 hgsc.bcm.edu hg19 9 21385205 21385205 + Missense_Mutation SNP C C A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . IFNA2 NM_000605 exon1 c.G124T p.A42S TCTGTGCCAGGAG . 103.0 40.0 122.0 0.0 . 32 . . Atlas-SNP CDC14B 8555 hgsc.bcm.edu hg19 9 99296248 99296248 + Missense_Mutation SNP A A G novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . CDC14B NM_033331 exon9 c.T907C p.C303R TTTCACAGATATC . 236.0 77.0 265.0 0.0 . 64 . . Atlas-SNP AKNA 80709 hgsc.bcm.edu hg19 9 117120428 117120428 + Missense_Mutation SNP C C G novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . AKNA NM_030767 exon12 c.G2512C p.V838L TAGATACCATCTT . 76.0 32.0 82.0 0.0 . 119 . . Atlas-SNP NOTCH1 4851 hgsc.bcm.edu hg19 9 139393656 139393656 + Missense_Mutation SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . NOTCH1 NM_017617 exon32 c.C5990T p.T1997M AGTGGCGTCGTGC . 78.0 31.0 67.0 0.0 . 1980 . . Atlas-SNP LARP4B 23185 hgsc.bcm.edu hg19 10 875345 875345 + Missense_Mutation SNP T T A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . LARP4B NM_015155 exon11 c.A1105T p.S369C GATAGCTGTGCGT . 106.0 51.0 122.0 0.0 . 110 . . Atlas-SNP ANK3 288 hgsc.bcm.edu hg19 10 61832432 61832432 + Missense_Mutation SNP T T A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ANK3 NM_020987 exon37 c.A8207T p.E2736V CTGTCTTCTTGAG . 135.0 33.0 107.0 0.0 . 703 . . Atlas-SNP TECTB 6975 hgsc.bcm.edu hg19 10 114046125 114046125 + Silent SNP C C T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . TECTB NM_058222 exon4 c.C459T p.S153S TGAGAGCCAACTG . 81.0 39.0 129.0 0.0 . 35 . . Atlas-SNP MKI67 4288 hgsc.bcm.edu hg19 10 129905646 129905646 + Missense_Mutation SNP G G C novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . MKI67 NM_002417 exon13 c.C4458G p.H1486Q TTTCTCGTGAGTC . 138.0 46.0 159.0 0.0 . 363 . . Atlas-SNP TUBGCP2 10844 hgsc.bcm.edu hg19 10 135098648 135098648 + Silent SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . TUBGCP2 NM_001256617 exon14 c.C2049T p.L683L GCTGCAGAGCTGC . 56.0 14.0 64.0 0.0 . 79 . . Atlas-SNP SYT8 90019 hgsc.bcm.edu hg19 11 1857147 1857147 + Missense_Mutation SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . SYT8 NM_138567 exon4 c.G332A p.S111N AGTCCAGCCCGGG . 108.0 39.0 130.0 0.0 . 29 . . Atlas-SNP RRM1 6240 hgsc.bcm.edu hg19 11 4141136 4141136 + Missense_Mutation SNP A A G novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . RRM1 NM_001033 exon9 c.A854G p.Y285C CTCGATATGTGGA . 95.0 22.0 121.0 0.0 . 31 . . Atlas-SNP OR56A3 390083 hgsc.bcm.edu hg19 11 5968733 5968733 + Missense_Mutation SNP A A G novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . OR56A3 NM_001003443 exon1 c.A157G p.I53V ATGACCATCTGGC . 123.0 39.0 145.0 0.0 . 81 . . Atlas-SNP CTNND1 1500 hgsc.bcm.edu hg19 11 57575697 57575697 + Missense_Mutation SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 CTNND1_ENST00000399050,NS,carcinoma,0,2 CTNND1 NM_001085458 exon13 c.G2024A p.S675N AGGAGAGCAAGAC . 92.0 40.0 89.0 0.0 . 203 . . Atlas-SNP CTSW 1521 hgsc.bcm.edu hg19 11 65650839 65650839 + Missense_Mutation SNP C C T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . CTSW NM_001335 exon9 c.C964T p.H322Y CCTCCACACCCCA . 88.0 25.0 106.0 0.0 . 18 . . Atlas-SNP ATM 472 hgsc.bcm.edu hg19 11 108206607 108206607 + Missense_Mutation SNP A A T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ATM NM_000051 exon56 c.A8187T p.Q2729H CATGCAACAGGTC . 91.0 51.0 106.0 0.0 . 1657 . . Atlas-SNP USP28 57646 hgsc.bcm.edu hg19 11 113683133 113683133 + Missense_Mutation SNP A A T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . USP28 NM_020886 exon16 c.T1837A p.W613R TGAGCCAGCTCTG . 81.0 21.0 79.0 0.0 . 135 . . Atlas-SNP CDON 50937 hgsc.bcm.edu hg19 11 125848206 125848206 + Missense_Mutation SNP T T A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . CDON NM_016952 exon18 c.A3349T p.N1117Y TATTGTTGTTTCG . 92.0 23.0 96.0 0.0 . 137 . . Atlas-SNP ARHGAP32 9743 hgsc.bcm.edu hg19 11 128843038 128843038 + Missense_Mutation SNP G G T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ARHGAP32 NM_001142685 exon21 c.C3321A p.F1107L GAGGTGGAACTGC . 134.0 52.0 152.0 0.0 . 307 . . Atlas-SNP PDE3A 5139 hgsc.bcm.edu hg19 12 20806880 20806880 + Splice_Site SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 PDE3A,NS,carcinoma,0,1 PDE3A NM_000921 exon15 c.2926-1G>A . TTTCTAGGGTGAT . 63.0 30.0 95.0 0.0 . 184 . . Atlas-SNP FGD4 121512 hgsc.bcm.edu hg19 12 32777980 32777980 + Missense_Mutation SNP A A G novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . FGD4 NM_139241 exon13 c.A1613G p.N538S AGGATAATGACAT . 245.0 98.0 263.0 1.0 . 86 . . Atlas-SNP ARID2 196528 hgsc.bcm.edu hg19 12 46230722 46230722 + Missense_Mutation SNP T T G novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ARID2 NM_152641 exon8 c.T971G p.F324C GTCATTTTATTTC . 117.0 8.0 121.0 0.0 . 311 . . Atlas-SNP COL2A1 1280 hgsc.bcm.edu hg19 12 48378844 48378844 + Silent SNP A A T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . COL2A1 NM_001844 exon27 c.T1767A p.P589P ACCTGGAGGTCCA . 182.0 44.0 174.0 0.0 . 368 . . Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49446022 49446022 + Missense_Mutation SNP C C T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . MLL2 NM_003482 exon10 c.G1444A p.A482T GCAATGCCTCAGG . 154.0 51.0 139.0 0.0 . 1173 . . Atlas-SNP ZFC3H1 196441 hgsc.bcm.edu hg19 12 72050734 72050734 + Missense_Mutation SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ZFC3H1 NM_144982 exon2 c.C946T p.R316C TCAAACGGTTCTT . 127.0 61.0 116.0 0.0 . 172 . . Atlas-SNP CCDC169-SOHLH2 100526761 hgsc.bcm.edu hg19 13 36747903 36747903 + Missense_Mutation SNP T T A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . . NM_001198910 exon14 c.A1157T p.Q386L AGGAATTGGAGCC . 88.0 32.0 96.0 0.0 . . . . Atlas-SNP AKAP11 11215 hgsc.bcm.edu hg19 13 42876689 42876689 + Silent SNP A A T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . AKAP11 NM_016248 exon8 c.A3807T p.T1269T CATTACAGAAGCT . 162.0 51.0 155.0 0.0 . 146 . . Atlas-SNP EFNB2 1948 hgsc.bcm.edu hg19 13 107147231 107147231 + Missense_Mutation SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . EFNB2 NM_004093 exon4 c.C611T p.P204L ATACCTGGATTTG . 80.0 8.0 68.0 0.0 . 39 . . Atlas-SNP MYH6 4624 hgsc.bcm.edu hg19 14 23858666 23858666 + Missense_Mutation SNP C C A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . MYH6 NM_002471 exon28 c.G3914T p.R1305L TTCCCCCGGGTCA . 110.0 40.0 136.0 0.0 . 274 . . Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64676274 64676274 + Missense_Mutation SNP A A G novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . SYNE2 NM_182914 exon102 c.A18518G p.K6173R GTGCCAAAGAGGA . 76.0 28.0 75.0 0.0 . 577 . . Atlas-SNP HSP90AA1 3320 hgsc.bcm.edu hg19 14 102605737 102605737 + Missense_Mutation SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . HSP90AA1 NM_001017963 exon1 c.C5T p.P2L CACGGGGGCATCC . 142.0 50.0 156.0 0.0 . 65 . . Atlas-SNP NIPA1 123606 hgsc.bcm.edu hg19 15 23086286 23086286 + Missense_Mutation SNP G G T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . NIPA1 NM_144599 exon1 c.C126A p.N42K GGACCCGTTCACC . 579.0 208.0 526.0 1.0 . 26 . . Atlas-SNP FGF7 2252 hgsc.bcm.edu hg19 15 49716642 49716642 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . FGF7 NM_002009 exon2 c.G148T p.E50X AGCCCTGAGCGAC . 159.0 47.0 150.0 0.0 . 21 . . Atlas-SNP CACNA1H 8912 hgsc.bcm.edu hg19 16 1269083 1269083 + Missense_Mutation SNP C C T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . CACNA1H NM_021098 exon34 c.C6001T p.R2001W TCCCCTCGGGGCA . 135.0 41.0 120.0 0.0 . 317 . . Atlas-SNP RNF151 146310 hgsc.bcm.edu hg19 16 2018778 2018778 + Missense_Mutation SNP G G T rs376750121 alternate_allele TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . RNF151 NM_174903 exon4 c.G590T p.R197L TCGTTCGTAGAGA . 155.0 59.0 131.0 0.0 . 12 . . Atlas-SNP SCNN1G 6340 hgsc.bcm.edu hg19 16 23203678 23203678 + Silent SNP A A C novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . SCNN1G NM_001039 exon4 c.A624C p.S208S GTGCTCAAATGAC . 74.0 29.0 76.0 0.0 . 82 . . Atlas-SNP TNRC6A 27327 hgsc.bcm.edu hg19 16 24834981 24834981 + Silent SNP C C T rs373265827 TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . TNRC6A NM_014494 exon25 c.C5742T p.H1914H CCTTCACGGCACT . 128.0 42.0 141.0 0.0 . 171 . . Atlas-SNP SALL1 6299 hgsc.bcm.edu hg19 16 51172810 51172810 + Missense_Mutation SNP A A T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . SALL1 NM_002968 exon2 c.T3323A p.V1108D GACGGGACGTGAC . 116.0 36.0 139.0 0.0 . 301 . . Atlas-SNP PKD1L2 114780 hgsc.bcm.edu hg19 16 81208430 81208430 + Silent SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . PKD1L2 NM_001076780 exon16 c.C2673T p.G891G CTCGGGGCCACCC . 57.0 19.0 67.0 0.0 . 361 . . Atlas-SNP FOXL1 2300 hgsc.bcm.edu hg19 16 86612573 86612573 + Missense_Mutation SNP C C A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . FOXL1 NM_005250 exon1 c.C244A p.R82S ATGGACCGCTTCC . 249.0 104.0 265.0 0.0 . 39 . . Atlas-SNP ANKRD11 29123 hgsc.bcm.edu hg19 16 89350828 89350828 + Missense_Mutation SNP T T C novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ANKRD11 NM_001256183 exon9 c.A2122G p.K708E ATTCTTTTTCTTC . 118.0 51.0 103.0 0.0 . 195 . . Atlas-SNP KRT39 390792 hgsc.bcm.edu hg19 17 39118496 39118496 + Missense_Mutation SNP T T A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . KRT39 NM_213656 exon5 c.A914T p.Q305L CATTGCTGCTGTT . 38.0 19.0 73.0 0.0 . 53 . . Atlas-SNP CRHR1 1394 hgsc.bcm.edu hg19 17 43893892 43893892 + Missense_Mutation SNP A A T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . CRHR1 NM_001145148 exon3 c.A185T p.Q62L CGGGGCAGCTAGT . 49.0 35.0 77.0 0.0 . 48 . . Atlas-SNP CEP95 90799 hgsc.bcm.edu hg19 17 62532722 62532722 + Missense_Mutation SNP A A G novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . CEP95 NM_138363 exon18 c.A2073G p.I691M ACAGATATTTAAG . 458.0 165.0 452.0 0.0 . 103 . . Atlas-SNP SMCHD1 23347 hgsc.bcm.edu hg19 18 2772286 2772286 + Silent SNP A A T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . SMCHD1 NM_015295 exon41 c.A5091T p.S1697S GCTATCAGAACAA . 97.0 35.0 109.0 0.0 . 88 . . Atlas-SNP EEF2 1938 hgsc.bcm.edu hg19 19 3981359 3981359 + Missense_Mutation SNP T T G novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . EEF2 NM_001961 exon7 c.A989C p.K330T CCTTCTTTGTCCT . 92.0 34.0 80.0 0.0 . 57 . . Atlas-SNP DUS3L 56931 hgsc.bcm.edu hg19 19 5790068 5790068 + Missense_Mutation SNP G G C novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . DUS3L NM_020175 exon2 c.C377G p.S126C ATTAGGGAGGGAC . 165.0 46.0 159.0 0.0 . 42 . . Atlas-SNP SH2D3A 10045 hgsc.bcm.edu hg19 19 6752638 6752638 + Missense_Mutation SNP C C T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . SH2D3A NM_005490 exon10 c.G1697A p.G566D AGGACGCCGAGGA . 87.0 9.0 87.0 0.0 . 53 . . Atlas-SNP COL5A3 50509 hgsc.bcm.edu hg19 19 10087234 10087234 + Silent SNP C C T rs146470482 bycluster;byfrequency;alternate_allele TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 COL5A3,NS,carcinoma,0,1 COL5A3 NM_015719 exon45 c.G3342A p.P1114P ACTCACCGGGGGA . 58.0 17.0 30.0 0.0 . 243 . C|0.999;G|0.001 Atlas-SNP ZNF285 26974 hgsc.bcm.edu hg19 19 44891428 44891428 + Missense_Mutation SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ZNF285 NM_152354 exon4 c.C979T p.R327C AGCTGCGCCTGAA . 111.0 37.0 135.0 0.0 . 86 . . Atlas-SNP MYBPC2 4606 hgsc.bcm.edu hg19 19 50961957 50961957 + Missense_Mutation SNP G G T novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . MYBPC2 NM_004533 exon21 c.G2452T p.G818W ATCGCGGGGCGCA . 79.0 25.0 60.0 0.0 . 103 . . Atlas-SNP PLCB4 5332 hgsc.bcm.edu hg19 20 9424869 9424869 + Silent SNP T T A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . PLCB4 NM_001172646 exon31 c.T2859A p.S953S AAATTCTTTAAAG . 120.0 48.0 101.0 0.0 . 204 . . Atlas-SNP MORC3 23515 hgsc.bcm.edu hg19 21 37742093 37742093 + Missense_Mutation SNP G G A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . MORC3 NM_015358 exon15 c.G2427A p.M809I TGAAATGGATGAG . 115.0 40.0 103.0 0.0 . 78 . . Atlas-SNP TCEANC 170082 hgsc.bcm.edu hg19 X 13681525 13681525 + Missense_Mutation SNP T T C novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . TCEANC NM_152634 exon4 c.T988C p.C330R AGACGCTGTGAGA . 143.0 101.0 147.0 1.0 . 29 . . Atlas-SNP RPS6KA3 6197 hgsc.bcm.edu hg19 X 20185787 20185787 + Missense_Mutation SNP G G C novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . RPS6KA3 NM_004586 exon17 c.C1522G p.Q508E ATTTTTGTCTAAG . 202.0 135.0 195.0 0.0 . 110 . . Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765176 66765176 + Missense_Mutation SNP A A T rs62636527 TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . AR NM_000044 exon1 c.A188T p.Q63L AGCAGCAGCAGCA . 96.0 22.0 76.0 0.0 . 249 . A|0.982;T|0.018 Atlas-SNP PCDH19 57526 hgsc.bcm.edu hg19 X 99596912 99596912 + Missense_Mutation SNP A A C novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . PCDH19 NM_001184880 exon5 c.T2837G p.M946R TCAGGCATCTGAG . 66.0 11.0 54.0 0.0 . 269 . . Atlas-SNP ARMCX3 51566 hgsc.bcm.edu hg19 X 100880947 100880947 + Missense_Mutation SNP T T G novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ARMCX3 NM_016607 exon5 c.T978G p.N326K TCAGAATCAATTC . 195.0 138.0 186.0 0.0 . 33 . . Atlas-SNP SEC23B 10483 hgsc.bcm.edu hg19 20 18506573 18506573 + Frame_Shift_Del DEL G G - novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . SEC23B NM_032985 exon7 c.830delT p.L277fs . . 120.0 38.0 124.0 0.0 . 70 . . Atlas-INDEL CUX2 23316 hgsc.bcm.edu hg19 12 111729223 111729223 + Frame_Shift_Del DEL C C - novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . CUX2 NM_015267 exon5 c.302delA p.D101fs . . 100.0 33.0 74.0 0.0 . 145 . . Atlas-INDEL SLC4A3 6508 hgsc.bcm.edu hg19 2 220497642 220497642 + Frame_Shift_Del DEL A A - novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . SLC4A3 NM_201574 exon9 c.1268delC p.A423fs . . 144.0 49.0 149.0 0.0 . 144 . . Atlas-INDEL LRRD1 401387 hgsc.bcm.edu hg19 7 91793161 91793162 + Frame_Shift_Del DEL TA TA - novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 TA TA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . LRRD1 NM_001161528 exon1 c.1356_1357del p.452_453del . . 192.0 48.0 132.0 0.0 . 35 . . Atlas-INDEL MYH4 4622 hgsc.bcm.edu hg19 17 10358067 10358067 + Frame_Shift_Del DEL G G - novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . MYH4 NM_017533 exon22 c.2497delT p.W833fs . . 77.0 43.0 122.0 0.0 . 349 . . Atlas-INDEL ZNF519 162655 hgsc.bcm.edu hg19 18 14105451 14105454 + Frame_Shift_Del DEL AGGT AGGT - novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 AGGT AGGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ZNF519 NM_145287 exon3 c.1086_1089del p.362_363del . . 61.0 17.0 67.0 0.0 . 53 . . Atlas-INDEL C6orf223 221416 hgsc.bcm.edu hg19 6 43970601 43970617 + Frame_Shift_Del DEL CGGGACAGGTGACTCCT CGGGACAGGTGACTCCT - novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 CGGGACAGGTGACTCCT CGGGACAGGTGACTCCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . C6orf223 NM_153246 exon4 c.466_482del p.156_161del . . 42.0 12.0 40.0 0.0 . 14 . . Atlas-INDEL TP53 7157 hgsc.bcm.edu hg19 17 7579521 7579521 + Frame_Shift_Del DEL C C - novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 TP53_ENST00000413465,NS,carcinoma,-1,3 TP53 NM_001126112 exon4 c.167delA p.E56fs . . 66.0 45.0 137.0 0.0 . 33396 . . Atlas-INDEL APOB 338 hgsc.bcm.edu hg19 2 21231201 21231202 + Frame_Shift_Ins INS - - A novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 APOB,NS,carcinoma,0,1 APOB NM_000384 exon26 c.8539_8540insT p.G2847fs . . 105.0 38.0 84.0 0.0 . 761 . . Atlas-INDEL ZNF784 147808 hgsc.bcm.edu hg19 19 56133523 56133524 + In_Frame_Ins INS - - CCG novel TCGA-DD-AAEI-01A-11D-A40R-10 TCGA-DD-AAEI-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 076dd458-720e-4989-8ec2-6d49897b1479 233f19ee-f0d2-4fa9-ae52-fa3da11b3489 . ZNF784 NM_203374 exon2 c.566_567insCGG p.G189delinsAG . . 39.0 14.0 40.0 0.0 . 9 . . Atlas-INDEL