Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CCNL2	81669	hgsc.bcm.edu	hg19	1	1326223	1326223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	CCNL2	NM_030937	exon6	c.C682T	p.R228C	CGGTGCGAAGGCT	.	302.0	30.0	408.0	0.0	.	54	.	.	Atlas-SNP
AADACL3	126767	hgsc.bcm.edu	hg19	1	12785194	12785194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	AADACL3_ENST00000359318,colon,carcinoma,0,2	AADACL3	NM_001103170	exon4	c.G284T	p.R95L	GTTACCGCAAGTT	.	68.0	31.0	90.0	0.0	.	84	.	.	Atlas-SNP
OVGP1	5016	hgsc.bcm.edu	hg19	1	111957295	111957295	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	OVGP1	NM_002557	exon11	c.T1828G	p.L610V	GACCCAAGTTACC	.	105.0	21.0	139.0	0.0	.	177	.	.	Atlas-SNP
PLEKHO1	51177	hgsc.bcm.edu	hg19	1	150129195	150129195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	PLEKHO1	NM_016274	exon4	c.C409A	p.R137S	AAGAACCGTATCT	.	123.0	43.0	94.0	0.0	.	37	.	.	Atlas-SNP
PSMD4	5710	hgsc.bcm.edu	hg19	1	151239737	151239737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	PSMD4	NM_002810	exon10	c.C1052G	p.A351G	ATGAAGCCATTCG	.	153.0	13.0	136.0	0.0	.	27	.	.	Atlas-SNP
THBS3	7059	hgsc.bcm.edu	hg19	1	155171290	155171290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	THBS3,NS,carcinoma,0,1	THBS3	NM_007112	exon11	c.G1247A	p.R416Q	CAGGTCCGGGCTG	.	361.0	116.0	295.0	0.0	.	70	.	.	Atlas-SNP
PPOX	5498	hgsc.bcm.edu	hg19	1	161140408	161140408	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	PPOX	NM_000309	exon11	c.1099-2A>C	.	CTCCTTAGGTGAT	.	110.0	13.0	69.0	0.0	.	34	.	.	Atlas-SNP
LBR	3930	hgsc.bcm.edu	hg19	1	225600294	225600294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	LBR	NM_194442	exon8	c.G946T	p.G316C	CTACGCCCTGGAA	.	481.0	70.0	469.0	0.0	.	54	.	.	Atlas-SNP
STRN	6801	hgsc.bcm.edu	hg19	2	37129895	37129895	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	STRN	NM_003162	exon6	c.492-1G>T	.	AGATACCTGTGTG	.	41.0	12.0	48.0	0.0	.	71	.	.	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	hg19	2	51255005	51255005	+	Missense_Mutation	SNP	T	T	C	rs202118977		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	NRXN1	NM_004801	exon2	c.A407G	p.K136R	ACCCACTTGGCCT	.	83.0	27.0	101.0	0.0	.	1118	.	.	Atlas-SNP
MAP3K2	10746	hgsc.bcm.edu	hg19	2	128065249	128065249	+	Missense_Mutation	SNP	T	T	C	rs370911611		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	MAP3K2	NM_006609	exon16	c.A1766G	p.Y589C	CGAGTATAGTCTG	.	99.0	32.0	139.0	0.0	.	78	.	.	Atlas-SNP
RAPGEF4	11069	hgsc.bcm.edu	hg19	2	173879264	173879264	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	RAPGEF4	NM_007023	exon18	c.C1731T	p.V577V	GCGAGTCATCCGC	.	168.0	61.0	174.0	0.0	.	103	.	.	Atlas-SNP
TRPM8	79054	hgsc.bcm.edu	hg19	2	234916713	234916713	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	TRPM8	NM_024080	exon24	c.3231-1G>T	.	TTTGCAGAATGAG	.	51.0	8.0	69.0	0.0	.	146	.	.	Atlas-SNP
GPR35	2859	hgsc.bcm.edu	hg19	2	241569491	241569491	+	Missense_Mutation	SNP	C	C	A	rs148595408	alternate_allele	TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	GPR35	NM_001195382	exon6	c.C215A	p.A72E	GCCTGGCGCTCTG	.	49.0	16.0	42.0	0.0	.	43	.	C|1.000;T|0.000	Atlas-SNP
TRNT1	51095	hgsc.bcm.edu	hg19	3	3182289	3182289	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	TRNT1	NM_182916	exon4	c.A438C	p.K146N	GCAGAAAGATGCG	.	179.0	51.0	279.0	0.0	.	34	.	.	Atlas-SNP
GRM7	2917	hgsc.bcm.edu	hg19	3	7620197	7620197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	GRM7	NM_000844	exon8	c.C1604A	p.T535K	AGAAGACACAGAA	.	199.0	34.0	237.0	0.0	.	223	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266112	41266112	+	Missense_Mutation	SNP	T	T	G	rs121913228	bycluster	TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	CTNNB1,gallbladder,other,-1,1	CTNNB1	NM_001098209	exon3	c.T109G	p.S37A	ATCCATTCTGGTG	.	118.0	14.0	143.0	0.0	.	4904	.	.	Atlas-SNP
ZNF502	91392	hgsc.bcm.edu	hg19	3	44763338	44763338	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	ZNF502	NM_001134440	exon4	c.A1029G	p.R343R	TCAGAGAATTCAT	.	120.0	18.0	138.0	0.0	.	58	.	.	Atlas-SNP
KNG1	3827	hgsc.bcm.edu	hg19	3	186459974	186459974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	KNG1_ENST00000265023,NS,carcinoma,0,1	KNG1	NM_001102416	exon10	c.G1789A	p.G597S	CCAAATGGCCTTT	.	148.0	21.0	126.0	0.0	.	129	.	.	Atlas-SNP
CTNND2	1501	hgsc.bcm.edu	hg19	5	11385065	11385065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	CTNND2	NM_001332	exon7	c.G889A	p.G297S	AGGAGCCGCGCGG	.	35.0	8.0	45.0	0.0	.	289	.	.	Atlas-SNP
VARS	7407	hgsc.bcm.edu	hg19	6	31750583	31750583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	VARS	NM_006295	exon15	c.A1802G	p.Y601C	ACTTCATAGTCAT	.	120.0	19.0	83.0	0.0	.	76	.	.	Atlas-SNP
CD109	135228	hgsc.bcm.edu	hg19	6	74481156	74481156	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	CD109	NM_133493	exon15	c.A1679C	p.K560T	AGATAAAGCTATA	.	37.0	12.0	42.0	0.0	.	170	.	.	Atlas-SNP
C6orf118	168090	hgsc.bcm.edu	hg19	6	165713968	165713968	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	C6orf118	NM_144980	exon3	c.A761C	p.Q254P	ATTTTCTGGAGCT	.	29.0	5.0	45.0	0.0	.	116	.	.	Atlas-SNP
TTYH3	80727	hgsc.bcm.edu	hg19	7	2687142	2687142	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	TTYH3	NM_025250	exon4	c.C496A	p.R166R	CCCCTGCGAGCCG	.	54.0	8.0	50.0	0.0	.	36	.	.	Atlas-SNP
ZNF853	54753	hgsc.bcm.edu	hg19	7	6662092	6662092	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	ZNF853	NM_017560	exon3	c.C1470T	p.C490C	GGAGTGCGGCAAG	.	18.0	10.0	37.0	0.0	.	32	.	.	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	hg19	7	11514132	11514132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	THSD7A	NM_015204	exon8	c.G2081T	p.C694F	ACTGTGCAAGGAT	.	93.0	21.0	101.0	0.0	.	219	.	.	Atlas-SNP
SLC13A1	6561	hgsc.bcm.edu	hg19	7	122774580	122774580	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	SLC13A1	NM_022444	exon8	c.C816T	p.R272R	AGGATAGCGTCTG	.	81.0	22.0	92.0	0.0	.	110	.	.	Atlas-SNP
TMUB1	83590	hgsc.bcm.edu	hg19	7	150779558	150779558	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	TMUB1	NM_031434	exon2	c.G93A	p.T31T	GGTGTGCGTTGAG	.	136.0	37.0	135.0	0.0	.	7	.	.	Atlas-SNP
C8orf76	84933	hgsc.bcm.edu	hg19	8	124243859	124243859	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	C8orf76	NM_032847	exon4	c.A496T	p.N166Y	CCCAGTTCCAAGG	.	98.0	47.0	79.0	0.0	.	26	.	.	Atlas-SNP
KIFC2	90990	hgsc.bcm.edu	hg19	8	145693163	145693163	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	KIFC2	NM_145754	exon6	c.681+1G>A	.	GGCGTGGTGAGGC	.	204.0	26.0	155.0	0.0	.	53	.	.	Atlas-SNP
GNAQ	2776	hgsc.bcm.edu	hg19	9	80537112	80537112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	GNAQ,NS,carcinoma,0,2	GNAQ	NM_002072	exon2	c.A286T	p.T96S	TGAGTGTGTCCAT	.	31.0	5.0	56.0	1.0	.	384	.	.	Atlas-SNP
FAM188A	80013	hgsc.bcm.edu	hg19	10	15875655	15875655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	FAM188A	NM_024948	exon8	c.A704G	p.D235G	TCACCATCCCATA	.	237.0	38.0	310.0	0.0	.	44	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	55663063	55663063	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.,4	PCDH15	NM_001142763	exon27	c.A3456C	p.K1152N	GTAGAATTTTTTC	.	58.0	8.0	49.0	0.0	.	1715	.	.	Atlas-SNP
TET1	80312	hgsc.bcm.edu	hg19	10	70426952	70426952	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	TET1	NM_030625	exon7	c.A4612C	p.T1538P	GAGCTCACAGAGA	.	116.0	15.0	100.0	0.0	.	255	.	.	Atlas-SNP
VCL	7414	hgsc.bcm.edu	hg19	10	75842271	75842271	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	VCL	NM_003373	exon7	c.A843T	p.K281N	GGCCAAAGGTTGG	.	82.0	9.0	78.0	0.0	.	77	.	.	Atlas-SNP
FAM213A	84293	hgsc.bcm.edu	hg19	10	82187098	82187098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	.	NM_032333	exon5	c.A422G	p.Y141C	AGTTCTATGGTCC	.	74.0	11.0	73.0	0.0	.	.	.	.	Atlas-SNP
R3HCC1L	27291	hgsc.bcm.edu	hg19	10	99991445	99991445	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	C10orf28,NS,carcinoma,0,1	R3HCC1L	NM_001256619	exon7	c.2003+1G>A	.	TTATCAGTGAGTA	.	68.0	13.0	102.0	1.0	.	3	.	.	Atlas-SNP
FGF8	2253	hgsc.bcm.edu	hg19	10	103530257	103530257	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	FGF8	NM_033163	exon6	c.C564T	p.P188P	CTTGCGGGGCCGG	.	88.0	15.0	94.0	0.0	.	23	.	.	Atlas-SNP
DOCK1	1793	hgsc.bcm.edu	hg19	10	128860039	128860039	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	DOCK1	NM_001380	exon23	c.A2381C	p.K794T	GGGTGAAGGTGAG	.	58.0	5.0	56.0	0.0	.	188	.	.	Atlas-SNP
NUP98	4928	hgsc.bcm.edu	hg19	11	3744592	3744592	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	NUP98	NM_005387	exon16	c.C1992A	p.A664A	AGGTTTGGCAATA	.	81.0	4.0	147.0	0.0	.	149	.	.	Atlas-SNP
OR52E6	390078	hgsc.bcm.edu	hg19	11	5862416	5862416	+	Missense_Mutation	SNP	C	C	A	rs61735020	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	OR52E6	NM_001005167	exon1	c.G712T	p.A238S	TGAGAGCTTTGAG	.	109.0	20.0	129.0	0.0	.	70	.	C|0.984;T|0.016	Atlas-SNP
MS4A4A	51338	hgsc.bcm.edu	hg19	11	60059725	60059725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	MS4A4A	NM_148975	exon2	c.G69A	p.M23I	AACCATGCAAGGA	.	89.0	21.0	137.0	0.0	.	76	.	.	Atlas-SNP
KIAA1377	57562	hgsc.bcm.edu	hg19	11	101793445	101793445	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	KIAA1377,NS,carcinoma,-1,3	KIAA1377	NM_020802	exon2	c.C202T	p.R68X	ATATGTCGAAATC	.	139.0	28.0	228.0	0.0	.	111	.	.	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	hg19	11	121360805	121360805	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	SORL1	NM_003105	exon5	c.C744G	p.V248V	ACATGTCAAGTCC	.	82.0	19.0	88.0	0.0	.	218	.	.	Atlas-SNP
FOXRED1	55572	hgsc.bcm.edu	hg19	11	126143301	126143301	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	FOXRED1	NM_017547	exon4	c.C488G	p.A163G	TGCTGGCTTCAGA	.	61.0	9.0	56.0	0.0	.	38	.	.	Atlas-SNP
ANO2	57101	hgsc.bcm.edu	hg19	12	5853336	5853336	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	ANO2_ENST00000327087,left_upper_lobe,carcinoma,0,2	ANO2	NM_020373	exon12	c.C1326T	p.F442F	AGCCATGAAGATA	.	85.0	19.0	84.0	0.0	.	309	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46233237	46233237	+	Missense_Mutation	SNP	A	A	G	rs370535448		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	ARID2	NM_152641	exon11	c.A1456G	p.I486V	CAAGCTATAGAGC	.	93.0	15.0	127.0	0.0	.	311	.	.	Atlas-SNP
UHRF1BP1L	23074	hgsc.bcm.edu	hg19	12	100453094	100453094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	UHRF1BP1L	NM_015054	exon14	c.A1961G	p.H654R	ATTGGATGTAGAA	.	74.0	25.0	97.0	0.0	.	144	.	.	Atlas-SNP
DCLK1	9201	hgsc.bcm.edu	hg19	13	36410249	36410249	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	DCLK1	NM_004734	exon8	c.G1150C	p.A384P	TTGTAGCTGGAAT	.	65.0	15.0	113.0	0.0	.	350	.	.	Atlas-SNP
CYSLTR2	57105	hgsc.bcm.edu	hg19	13	49281602	49281602	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	CYSLTR2	NM_020377	exon1	c.C649G	p.L217V	TTCACACTCAGCA	.	52.0	14.0	35.0	0.0	.	55	.	.	Atlas-SNP
OLFM4	10562	hgsc.bcm.edu	hg19	13	53624695	53624695	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	OLFM4	NM_006418	exon5	c.A1322C	p.Y441S	TTCTGTATGCCAC	.	73.0	22.0	95.0	0.0	.	94	.	.	Atlas-SNP
TGDS	23483	hgsc.bcm.edu	hg19	13	95235445	95235445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	TGDS	NM_014305	exon5	c.A359G	p.Y120C	GTGCCATAAACAT	.	78.0	29.0	66.0	0.0	.	24	.	.	Atlas-SNP
TOX4	9878	hgsc.bcm.edu	hg19	14	21964732	21964732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	TOX4	NM_014828	exon9	c.A1834G	p.R612G	GCCTCTAGAAATT	.	74.0	13.0	78.0	0.0	.	50	.	.	Atlas-SNP
HSP90AA1	3320	hgsc.bcm.edu	hg19	14	102552400	102552400	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	HSP90AA1	NM_001017963	exon4	c.A590T	p.E197V	TGCAGCTCTTTCC	.	66.0	9.0	77.0	0.0	.	65	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63920927	63920927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	HERC1_ENST00000443617,colon,carcinoma,0,2	HERC1	NM_003922	exon70	c.C13054T	p.R4352C	GGCAGCGGCCAGC	.	71.0	3.0	66.0	0.0	.	624	.	.	Atlas-SNP
MEF2A	4205	hgsc.bcm.edu	hg19	15	100252747	100252747	+	Missense_Mutation	SNP	C	C	A	rs369815961	alternate_allele	TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	MEF2A_ENST00000453228,NS,carcinoma,-1,3	MEF2A	NM_005587	exon11	c.C1271A	p.P424Q	AGCCGCCGCCACC	.	58.0	6.0	67.0	0.0	.	138	.	.	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	hg19	16	2814150	2814150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	SRRM2	NM_016333	exon11	c.A3621C	p.R1207S	ACTTAGAACCCCG	.	110.0	16.0	127.0	0.0	.	263	.	.	Atlas-SNP
SF3B3	23450	hgsc.bcm.edu	hg19	16	70562901	70562901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	SF3B3	NM_012426	exon3	c.A196G	p.M66V	TCACTCATGGCCT	.	137.0	25.0	191.0	0.0	.	99	.	.	Atlas-SNP
PLCG2	5336	hgsc.bcm.edu	hg19	16	81922861	81922861	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	PLCG2	NM_002661	exon10	c.T850A	p.F284I	GAGCCTTTCTTGT	.	102.0	22.0	119.0	0.0	.	276	.	.	Atlas-SNP
NLGN2	57555	hgsc.bcm.edu	hg19	17	7318376	7318376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	NLGN2	NM_020795	exon5	c.G946T	p.G316C	AAGGTGGGCTGTG	.	94.0	39.0	98.0	0.0	.	61	.	.	Atlas-SNP
TRIM16	10626	hgsc.bcm.edu	hg19	17	15539431	15539431	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	TRIM16	NM_006470	exon6	c.G768A	p.E256E	CCTGTACTCCAGG	.	115.0	32.0	112.0	0.0	.	45	.	.	Atlas-SNP
HOXB2	3212	hgsc.bcm.edu	hg19	17	46620510	46620510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	HOXB2	NM_002145	exon2	c.G991T	p.D331Y	GGCTGTCGAGAGA	.	83.0	13.0	79.0	0.0	.	23	.	.	Atlas-SNP
CASKIN2	57513	hgsc.bcm.edu	hg19	17	73501979	73501979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	CASKIN2	NM_020753	exon9	c.C758G	p.P253R	TGGTTATACGTAT	.	59.0	16.0	39.0	0.0	.	66	.	.	Atlas-SNP
FBF1	85302	hgsc.bcm.edu	hg19	17	73922395	73922395	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	FBF1	NM_001080542	exon10	c.A666G	p.K222K	CTCTGCTTTGGGG	.	49.0	6.0	31.0	0.0	.	48	.	.	Atlas-SNP
NEDD4L	23327	hgsc.bcm.edu	hg19	18	56001068	56001068	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	NEDD4L	NM_015277	exon12	c.A1009C	p.R337R	TCCTCAAGGTTGA	.	91.0	15.0	97.0	0.0	.	126	.	.	Atlas-SNP
FBN3	84467	hgsc.bcm.edu	hg19	19	8196669	8196669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	FBN3	NM_032447	exon14	c.T1759C	p.C587R	TGGTACAGTGGCC	.	76.0	14.0	57.0	0.0	.	300	.	.	Atlas-SNP
HAPLN4	404037	hgsc.bcm.edu	hg19	19	19369378	19369378	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	HAPLN4	NM_023002	exon4	c.C771T	p.N257N	CTCGGCGTTATGG	.	85.0	33.0	89.0	0.0	.	44	.	.	Atlas-SNP
PNMAL1	55228	hgsc.bcm.edu	hg19	19	46974172	46974172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	PNMAL1_ENST00000438932,caecum,carcinoma,+2,2	PNMAL1	NM_018215	exon2	c.G121A	p.E41K	AGGTCTCCTCAAT	.	61.0	14.0	48.0	0.0	.	87	.	.	Atlas-SNP
GRIK1	2897	hgsc.bcm.edu	hg19	21	30968882	30968882	+	Silent	SNP	G	G	T	rs374777692	alternate_allele	TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	GRIK1	NM_000830	exon9	c.C1215A	p.G405G	CACTTCGCCAGCA	.	63.0	10.0	68.0	0.0	.	293	.	.	Atlas-SNP
CSNK1E	1454	hgsc.bcm.edu	hg19	22	38694819	38694819	+	Missense_Mutation	SNP	T	T	C	rs11548926	byhapmap	TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	CSNK1E	NM_001894	exon7	c.A857G	p.Y286C	AAGACGTAGTCAT	.	105.0	14.0	85.0	0.0	.	143	.	T|1.000;|0.000	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14607	14607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	.	ENST00000361681	exon1	c.C67T	p.P23S	GAGAAGGCTTAGA	.	417.0	349.0	172.0	1.0	.	.	.	.	Atlas-SNP
KRT2	3849	hgsc.bcm.edu	hg19	12	53045630	53045631	+	In_Frame_Ins	INS	-	-	CCGCCTCCAAAGCCGCTG	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	KRT2	NM_000423	exon1	c.297_298insCAGCGGCTTTGGAGGCGG	p.G99delinsGSGFGGG	.	.	181.0	23.0	210.0	0.0	.	94	.	.	Atlas-INDEL
CHST10	9486	hgsc.bcm.edu	hg19	2	101019079	101019080	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	CHST10	NM_004854	exon4	c.139_140insCC	p.M47fs	.	.	52.0	12.0	50.0	0.0	.	42	.	.	Atlas-INDEL
CCDC17	149483	hgsc.bcm.edu	hg19	1	46088424	46088429	+	In_Frame_Del	DEL	GGATTT	GGATTT	-	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	GGATTT	GGATTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	CCDC17	NM_001114938	exon5	c.735_740del	p.245_247del	.	.	127.0	14.0	187.0	0.0	.	54	.	.	Atlas-INDEL
ING5	84289	hgsc.bcm.edu	hg19	2	242662681	242662681	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	ING5	NM_032329	exon7	c.674delG	p.G225fs	.	.	126.0	38.0	134.0	0.0	.	14	.	.	Atlas-INDEL
SYCP2	10388	hgsc.bcm.edu	hg19	20	58470629	58470631	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	SYCP2	NM_014258	exon19	c.1527_1529del	p.509_510del	.	.	118.0	12.0	129.0	0.0	.	204	.	.	Atlas-INDEL
PTPN9	5780	hgsc.bcm.edu	hg19	15	75798259	75798283	+	Frame_Shift_Del	DEL	TCAATTTTGACGTACCCACCCAGGT	TCAATTTTGACGTACCCACCCAGGT	-	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	TCAATTTTGACGTACCCACCCAGGT	TCAATTTTGACGTACCCACCCAGGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	PTPN9	NM_002833	exon7	c.702_726del	p.234_242del	.	.	175.0	12.0	163.0	0.0	.	53	.	.	Atlas-INDEL
TAB2	23118	hgsc.bcm.edu	hg19	6	149699603	149699604	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AAEK-01A-11D-A40R-10	TCGA-DD-AAEK-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d0714057-ac5a-402f-b552-a914b5564c0c	4037ad92-fc4e-4737-8fb7-e3c276624c39	.	TAB2	NM_015093	exon5	c.552_553insA	p.N184fs	.	.	56.0	18.0	85.0	0.0	.	55	.	.	Atlas-INDEL